Citrus Sinensis ID: 042476

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
Protein Sequence
ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPLPDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFIGPLLVNRRWRYKYGHFLDGFVDRFCYFVRKCY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEccccccccccccHHHcccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccccccccccccEEEEEccccEEEEEEEEEEcccEEEEcccccEEEEEEcccccccccccHHHHccccccccccccccccccccccHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHcccccHcccccccEEEcccccccccccHHHcccccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHccccEEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccHHcccccccEEEccccccccccccHHccHHHHHHHcccccccccHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHcccccccEEEccccccccccccHccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
elnlsnnqiygvipyfdhrplpyqpfefglldlsnnalsGSIIHLICNGDNKSVIISLKLsknyfsgdipdcwmnwphlqvlnlddnyftgnlpisigTLSSLRSLHLRNnrlagifpvslkncsslisldigendffgsiptwvgerfprLLILNLrsnkfngslpvqlcHLTFLRILDVAhnnlsgtiprcINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIdisknnfsgeipmqltnleglqtlnlshnffvgkipenignmrsiesldfstnrlfgripqsmsslsflnhlnlsendlsgqipsstqlqsfgascfsgndlcgaplpdctekntfapevpngngnededadEVDWLLYASMALGFVVGFWCFigpllvnrrwrykyghfLDGFVDRFCYFVRKCY
Flexible Loop (DISEMBL)
ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPLPDCTEKNTFapevpngngneDEDADEVDWLLYASMALGFVVGFWCFIGPLLVNRRWRYKYGHFLDGFVDRFCYFVRKCY
Low Complexity Region (SEG)
ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTlsslrslhlrnnrlAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQsmsslsflnhlnlsenDLSGQIPSSTQLQSFGASCFSGNDLCGAPLPDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFIGPLLVNRRWRYKYGHFLDGFVDRFCYFVRKCY
Disordered region (IsUnstruct)
******NQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIP*****LSFLNHL*******************FGASCFSGNDLCGAPLP************************EVDWLLYASMALGFVVGFWCFIGPLLVNRRWRYKYGHFLDGFVDRFCYFVRKC*
Disordered Region (DISOPRED)
ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPL***************************DWLLYASMALGFVVGFWCFIGPLLVNRRWRYKYGHFLDGFVDRFCYFVRKCY
Disordered Region (DISEMBL)
ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPLPDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFIGPLLVNRRWRYKYGHFLDGFVDRFCYFVRKCY
Disordered Region (DISPRO)
*LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPLPDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFIGPLLVNRRWRYKYGHFLDGFVDRFCYFVRKCY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPLPDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFIGPLLVNRRWRYKYGHFLDGFVDRFCYFVRKCY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	433	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.829	0.423	0.354	2e-48
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.692	0.239	0.358	9e-41
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.886	0.318	0.307	2e-40
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.935	0.335	0.304	2e-40
Q9FL28	1173	LRR receptor-like serine/	no	no	0.780	0.288	0.334	6e-38
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.836	0.302	0.310	6e-36
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.923	0.335	0.303	1e-35
Q9SCT4	836	Probably inactive leucine	no	no	0.718	0.372	0.345	2e-34
P93194	1109	Receptor-like protein kin	N/A	no	0.715	0.279	0.35	3e-34
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.780	0.306	0.325	5e-34

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  194 bits (492), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 197/375 (52%), Gaps = 16/375 (4%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWP-HLQVLNLDDNYF 89
           LDL++N+  G I ++IC     S +  L LS N FSG IP C  N+   ++ LNL DN F
Sbjct: 448 LDLNSNSFQGPIPYMICK---LSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNF 504

Query: 90  TGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERF 149
           +G LP      + L SL + +N+L G FP SL NC +L  +++  N      P+W+ E  
Sbjct: 505 SGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESL 563

Query: 150 PRLLILNLRSNKFNGSLPVQLCHLTF--LRILDVAHNNLSGTIP-RCINNFTAMATINSS 206
           P L +LNLRSNKF G L  +   + F  LRI+D++HNN SGT+P    +N+  M T+ + 
Sbjct: 564 PSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTL-TE 622

Query: 207 NQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE 266
                +  F    +  + +  +V KG+ + +  I    R+ID S N  +G IP  L  L+
Sbjct: 623 EMDQYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLK 682

Query: 267 GLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDL 326
            L+ LNLS N F   IP  + N+  +E+LD S N+L G+IPQ +++LSFL+++N S N L
Sbjct: 683 ELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLL 742

Query: 327 SGQIPSSTQLQSFGASCFSGNDLCGAPLPDCTEKNTFAP--EVPNGNGNEDEDADEVDWL 384
            G +P  TQ Q    S F  N         C +     P  ++P     ED    E +  
Sbjct: 743 QGPVPRGTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLP-----EDLSEAEENMF 797

Query: 385 LYASMALGFVVGFWC 399
            + + A+ +  G  C
Sbjct: 798 NWVAAAIAYGPGVLC 812

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  168 bits (425), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 174/329 (52%), Gaps = 29/329 (8%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
           ++ S+N  +GSI  L C     S  +S  +++N F GDIP       +L  L L  N FT
Sbjct: 558 INFSSNKFNGSISPL-CG---SSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFT 613

Query: 91  GNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP 150
           G +P + G +S L  L +  N L+GI PV L  C  L  +D+  N   G IPTW+G + P
Sbjct: 614 GRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLG-KLP 672

Query: 151 RLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKN 210
            L  L L SNKF GSLP ++  LT +  L +  N+L+G+IP+ I N  A+  +N      
Sbjct: 673 LLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALN------ 726

Query: 211 AIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQT 270
                        E+  +   G L      L+ +  + +S+N  +GEIP+++  L+ LQ+
Sbjct: 727 ------------LEENQL--SGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQS 772

Query: 271 -LNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQ 329
            L+LS+N F G+IP  I  +  +ESLD S N+L G +P  +  +  L +LNLS N+L G+
Sbjct: 773 ALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGK 832

Query: 330 IPSSTQLQSFGASCFSGN-DLCGAPLPDC 357
           +    Q   + A  F GN  LCG+PL  C
Sbjct: 833 L--KKQFSRWQADAFVGNAGLCGSPLSHC 859

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/445 (30%), Positives = 205/445 (46%), Gaps = 61/445 (13%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
           LD+S+N L+G I   IC  D  + +  L L  N F G IPD   N   L  L+L  NY T
Sbjct: 406 LDMSSNNLTGVIPSGICK-DPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLT 464

Query: 91  GNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP 150
           G++P S+G+LS L+ L L  N+L+G  P  L    +L +L +  ND  G IP  +     
Sbjct: 465 GSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASL-SNCT 523

Query: 151 RLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMA----TINSS 206
           +L  ++L +N+ +G +P  L  L+ L IL + +N++SG IP  + N  ++       N  
Sbjct: 524 KLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFL 583

Query: 207 NQKNAIYYFVTRGNIVFE------------DASVVTKGL--LVEYNSI------------ 240
           N       F   GNI               D S    G   L+E+  I            
Sbjct: 584 NGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRH 643

Query: 241 -LNLVRS-----------------IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKI 282
             N  R                  +D+S N   G IP +L  +  L  LNL HN   G I
Sbjct: 644 PCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMI 703

Query: 283 PENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGAS 342
           P+ +G ++++  LD S NR  G IP S++SL+ L  ++LS N+LSG IP S    +F   
Sbjct: 704 PQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDY 763

Query: 343 CFSGNDLCGAPLP-DCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFI 401
            F+ N LCG PLP  C+         P  + N+ + +      L  S+A+G +   +C  
Sbjct: 764 RFANNSLCGYPLPIPCSSG-------PKSDANQHQKSHRRQASLAGSVAMGLLFSLFCIF 816

Query: 402 GPLLV---NRRWRYKYGHFLDGFVD 423
           G ++V    ++ R K    L+ ++D
Sbjct: 817 GLIIVAIETKKRRRKKEAALEAYMD 841

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 144/473 (30%), Positives = 220/473 (46%), Gaps = 68/473 (14%)

Query: 4   LSNNQIYGVIP-YFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSK 62
           LS N+  G +P  F + P      +   LD+S+N L+G I   IC  D  + +  L L  
Sbjct: 384 LSFNKFVGGLPDSFSNLP------KLETLDMSSNNLTGIIPSGICK-DPMNNLKVLYLQN 436

Query: 63  NYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLK 122
           N F G IPD   N   L  L+L  NY TG++P S+G+LS L+ L L  N+L+G  P  L 
Sbjct: 437 NLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELM 496

Query: 123 NCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVA 182
              +L +L +  ND  G IP  +     +L  ++L +N+ +G +P  L  L+ L IL + 
Sbjct: 497 YLQALENLILDFNDLTGPIPASL-SNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLG 555

Query: 183 HNNLSGTIPRCINNFTAMA--TINSSNQKNAIY--YFVTRGNIVFE------------DA 226
           +N++SG IP  + N  ++    +N++    +I    F   GNI               D 
Sbjct: 556 NNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDG 615

Query: 227 SVVTKGL--LVEYNSI-------------LNLVRS-----------------IDISKNNF 254
           S    G   L+E+  I              N  R                  +D+S N  
Sbjct: 616 SKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKL 675

Query: 255 SGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLS 314
            G IP +L  +  L  LNL HN   G IP+ +G ++++  LD S NR  G IP S++SL+
Sbjct: 676 EGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLT 735

Query: 315 FLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPLP-DCTEKNTFAPEVPNGNGN 373
            L  ++LS N+LSG IP S    +F    F+ N LCG PLP  C+         P  + N
Sbjct: 736 LLGEIDLSNNNLSGMIPESAPFDTFPDYRFANNSLCGYPLPLPCSSG-------PKSDAN 788

Query: 374 EDEDADEVDWLLYASMALGFVVGFWCFIGPLLV---NRRWRYKYGHFLDGFVD 423
           + + +      L  S+A+G +   +C  G ++V    ++ R K    L+ ++D
Sbjct: 789 QHQKSHRRQASLAGSVAMGLLFSLFCIFGLIIVAIETKKRRRKKEAALEAYMD 841

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  158 bits (400), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 136/406 (33%), Positives = 197/406 (48%), Gaps = 68/406 (16%)

Query: 2   LNLSNNQIYGVIPYFDHR---------------PLPYQPFE---FGLLDLSNNALSGSII 43
           L+LS+NQ+ G IP    R                +P   F       L +++N L+G++ 
Sbjct: 413 LDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLK 472

Query: 44  HLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL 103
            LI  G  + + I L++S N  +G IP    N   L +L L  N FTG +P  +  L+ L
Sbjct: 473 PLI--GKLQKLRI-LQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLL 529

Query: 104 RSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN 163
           + L + +N L G  P  + +   L  LD+  N F G IP     +   L  L+L+ NKFN
Sbjct: 530 QGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFS-KLESLTYLSLQGNKFN 588

Query: 164 GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVF 223
           GS+P  L  L+ L   D++ N L+GTIP  +     +A++     KN   Y     N++ 
Sbjct: 589 GSIPASLKSLSLLNTFDISDNLLTGTIPGEL-----LASL-----KNMQLYLNFSNNLL- 637

Query: 224 EDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLT-------------NLEG--- 267
                   G + +    L +V+ ID+S N FSG IP  L              NL G   
Sbjct: 638 -------TGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIP 690

Query: 268 ---------LQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNH 318
                    + +LNLS N F G+IP++ GNM  + SLD S+N L G IP+S+++LS L H
Sbjct: 691 DEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKH 750

Query: 319 LNLSENDLSGQIPSSTQLQSFGASCFSGN-DLCGA--PLPDCTEKN 361
           L L+ N+L G +P S   ++  AS   GN DLCG+  PL  CT K 
Sbjct: 751 LKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCTIKQ 796

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  152 bits (383), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 136/438 (31%), Positives = 193/438 (44%), Gaps = 76/438 (17%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           EL L NN   G IP     P      E   L LS N LSG+I   +    + S +  LKL
Sbjct: 420 ELYLQNNGFTGKIP-----PTLSNCSELVSLHLSFNYLSGTIPSSL---GSLSKLRDLKL 471

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
             N   G+IP   M    L+ L LD N  TG +P  +   ++L  + L NNRL       
Sbjct: 472 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT------ 525

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
                             G IP W+G R   L IL L +N F+G++P +L     L  LD
Sbjct: 526 ------------------GEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 566

Query: 181 VAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI 240
           +  N  +GTIP  +  F     I ++      Y ++    +  E       G L+E+  I
Sbjct: 567 LNTNLFNGTIPAAM--FKQSGKIAANFIAGKRYVYIKNDGMKKECHGA---GNLLEFQGI 621

Query: 241 ----LNLVRS---------------------------IDISKNNFSGEIPMQLTNLEGLQ 269
               LN + +                           +D+S N  SG IP ++ ++  L 
Sbjct: 622 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 681

Query: 270 TLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQ 329
            LNL HN   G IP+ +G++R +  LD S+N+L GRIPQ+MS+L+ L  ++LS N+LSG 
Sbjct: 682 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 741

Query: 330 IPSSTQLQSFGASCFSGN-DLCGAPLPDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYAS 388
           IP   Q ++F  + F  N  LCG PLP C   N       +G  +           L  S
Sbjct: 742 IPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA------DGYAHHQRSHGRRPASLAGS 795

Query: 389 MALGFVVGFWCFIGPLLV 406
           +A+G +  F C  G +LV
Sbjct: 796 VAMGLLFSFVCIFGLILV 813

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 154/507 (30%), Positives = 222/507 (43%), Gaps = 107/507 (21%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           EL L+NNQI G IP  D   LP        LDL +N  +G I   +    N   ++    
Sbjct: 405 ELLLTNNQINGSIPE-DLWKLPLMA-----LDLDSNNFTGEIPKSLWKSTN---LMEFTA 455

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           S N   G +P    N   L+ L L DN  TG +P  IG L+SL  L+L  N   G  PV 
Sbjct: 456 SYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVE 515

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP---------VQLC 171
           L +C+SL +LD+G N+  G IP  +     +L  L L  N  +GS+P         +++ 
Sbjct: 516 LGDCTSLTTLDLGSNNLQGQIPDKI-TALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMP 574

Query: 172 HLTFLR---ILDVAHNNLSGTIPRCINNFTAMATINSSNQ--KNAIYYFVTR-------- 218
            L+FL+   I D+++N LSG IP  +     +  I+ SN      I   ++R        
Sbjct: 575 DLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILD 634

Query: 219 -------GNIVFEDA-SVVTKGLLVEYNSI----------------LNLVRS-------- 246
                  G+I  E   S+  +GL +  N +                LNL ++        
Sbjct: 635 LSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPA 694

Query: 247 ----------IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLD 296
                     +D+S NN SGE+  +L+ +E L  L +  N F G+IP  +GN+  +E LD
Sbjct: 695 SLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLD 754

Query: 297 FSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN-DLCGAPL- 354
            S N L G IP  +  L  L  LNL++N+L G++PS    Q    +  SGN +LCG  + 
Sbjct: 755 VSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVG 814

Query: 355 PDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFIGPLLVNRRW---- 410
            DC  + T                    W + A + LGF +  + F+  L   RRW    
Sbjct: 815 SDCKIEGTKLRSA---------------WGI-AGLMLGFTIIVFVFVFSL---RRWAMTK 855

Query: 411 RYKY--------GHFLDGFVDRFCYFV 429
           R K            L GFVD+  YF+
Sbjct: 856 RVKQRDDPERMEESRLKGFVDQNLYFL 882

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SCT4|IMK2_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 168/342 (49%), Gaps = 31/342 (9%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
           L L NN ++GS+   +  G  KS +  + L  N  SG IP    N P LQ L+L  N  T
Sbjct: 123 LSLHNNVIAGSVPRSL--GYLKS-LRGVYLFNNRLSGSIPVSLGNCPLLQNLDLSSNQLT 179

Query: 91  GNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP 150
           G +P S+   + L  L+L  N L+G  PVS+    +L  LD+  N+  GSIP +      
Sbjct: 180 GAIPPSLTESTRLYRLNLSFNSLSGPLPVSVARSYTLTFLDLQHNNLSGSIPDFFVNGSH 239

Query: 151 RLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKN 210
            L  LNL  N+F+G++PV LC  + L  + ++HN LSG+IPR       + +++ S   N
Sbjct: 240 PLKTLNLDHNRFSGAVPVSLCKHSLLEEVSISHNQLSGSIPRECGGLPHLQSLDFS--YN 297

Query: 211 AIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQT 270
           +I                   G + +  S L+ + S+++  N+  G IP  +  L  L  
Sbjct: 298 SI------------------NGTIPDSFSNLSSLVSLNLESNHLKGPIPDAIDRLHNLTE 339

Query: 271 LNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQI 330
           LNL  N   G IPE IGN+  I+ LD S N   G IP S+  L+ L+  N+S N LSG +
Sbjct: 340 LNLKRNKINGPIPETIGNISGIKKLDLSENNFTGPIPLSLVHLAKLSSFNVSYNTLSGPV 399

Query: 331 PSSTQLQSFGASCFSGN-DLCG------APLPDCTEKNTFAP 365
           P     + F +S F GN  LCG       P PD     T +P
Sbjct: 400 PPVLS-KKFNSSSFLGNIQLCGYSSSNPCPAPDHHHPLTLSP 440

Arabidopsis thaliana (taxid: 3702)

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  146 bits (369), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/320 (35%), Positives = 163/320 (50%), Gaps = 10/320 (3%)

Query: 20  PLPY---QPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNW 76
           P+P    Q  +   L L+ N  SG I   +  G  KS +I L+L +N   G+IP      
Sbjct: 299 PIPSCFGQLTKLDTLYLAGNHFSGRIPPEL--GKCKS-MIDLQLQQNQLEGEIPGELGML 355

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
             LQ L+L  N  +G +P+SI  + SL+SL L  N L+G  PV +     L+SL + EN 
Sbjct: 356 SQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENH 415

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINN 196
           F G IP  +G     L +L+L  N F G +P  LC    L+ L + +N L G++P  +  
Sbjct: 416 FTGVIPQDLGAN-SSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGG 474

Query: 197 FTAMA--TINSSNQKNAIYYFVTRGNIVFEDASVVT-KGLLVEYNSILNLVRSIDISKNN 253
            + +    +  +N +  +  FV + N++F D S     G +      L  V +I +S N 
Sbjct: 475 CSTLERLILEENNLRGGLPDFVEKQNLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQ 534

Query: 254 FSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSL 313
            SG IP +L +L  L+ LNLSHN   G +P  + N   +  LD S N L G IP ++ SL
Sbjct: 535 LSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSL 594

Query: 314 SFLNHLNLSENDLSGQIPSS 333
           + L  L+L EN  SG IP+S
Sbjct: 595 TELTKLSLGENSFSGGIPTS 614

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  145 bits (367), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 175/372 (47%), Gaps = 34/372 (9%)

Query: 2   LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
           L L  N + G IP     P      +  +LD+S+N LSG I   +C   N   +I L L 
Sbjct: 390 LQLFQNSLSGTIP-----PKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSN---MIILNLG 441

Query: 62  KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSL 121
            N  SG+IP        L  L L  N   G  P ++    ++ ++ L  NR  G  P  +
Sbjct: 442 TNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREV 501

Query: 122 KNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDV 181
            NCS+L  L + +N F G +P  +G    +L  LN+ SNK  G +P ++ +   L+ LD+
Sbjct: 502 GNCSALQRLQLADNGFTGELPREIG-MLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDM 560

Query: 182 AHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSIL 241
             NN SGT+P  + +   +  +  SN   +    V  GN                    L
Sbjct: 561 CCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGN--------------------L 600

Query: 242 NLVRSIDISKNNFSGEIPMQLTNLEGLQ-TLNLSHNFFVGKIPENIGNMRSIESLDFSTN 300
           + +  + +  N F+G IP +L +L GLQ  LNLS+N   G+IP  + N+  +E L  + N
Sbjct: 601 SRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNN 660

Query: 301 RLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGND-LCGAPLPDCTE 359
            L G IP S ++LS L   N S N L+G IP    L++   S F GN+ LCG PL  C +
Sbjct: 661 NLSGEIPSSFANLSSLLGYNFSYNSLTGPIP---LLRNISMSSFIGNEGLCGPPLNQCIQ 717

Query: 360 KNTFAPEVPNGN 371
              FAP    G 
Sbjct: 718 TQPFAPSQSTGK 729

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
224072885	1024	predicted protein [Populus trichocarpa]	0.965	0.408	0.495	1e-112
255547794	909	serine-threonine protein kinase, plant-t	0.981	0.467	0.493	1e-109
315436720	1020	verticillium wilt resistance-like protei	0.979	0.415	0.48	1e-107
255543959	602	serine-threonine protein kinase, plant-t	0.958	0.689	0.487	1e-107
255581850	1082	leucine-rich repeat receptor protein kin	0.960	0.384	0.489	1e-106
255543977	1075	serine/threonine-protein kinase bri1, pu	0.969	0.390	0.460	1e-103
350284749	980	receptor-like protein [Malus baccata]	0.981	0.433	0.463	1e-102
14330716	980	HcrVf2 protein [Malus floribunda] gi|350	0.981	0.433	0.463	1e-102
209970605	974	HB03p [Malus floribunda]	0.979	0.435	0.461	1e-102
350284751	980	receptor-like protein [Malus baccata]	0.981	0.433	0.463	1e-102

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/446 (49%), Positives = 293/446 (65%), Gaps = 28/446 (6%)

Query: 2    LNLSNNQIYGVIP---YFD---------------HRPLPYQPFEFGLLDLSNNALSGSII 43
            LNLS+NQI GVIP     D                 PLP      G LDLSNN+ SGS++
Sbjct: 584  LNLSHNQIQGVIPSKLKLDFTASYPLVDLSSNQFKGPLPSIFSNVGALDLSNNSFSGSML 643

Query: 44   HLICNG-DNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSS 102
            + +C+  D    +  L L +N  SG IPDCW +W +L  + L +N  +GN+P SIG LS 
Sbjct: 644  NFLCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIKLSNNKLSGNIPDSIGALSL 703

Query: 103  LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKF 162
            L SLH+RN+ L+G  P+SLKNC+ LI+LD+ EN+  GS+P W+G+RF  +++LN+R+NKF
Sbjct: 704  LESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPAWIGKRFSSMVVLNMRANKF 763

Query: 163  NGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIV 222
            +G +P +LC+L  L+ILD+AHN LS +IP C N  +AMAT N S  K     ++  G+  
Sbjct: 764  HGRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMATRNDSLGK----IYLDSGSST 819

Query: 223  FEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKI 282
            F++  +V KG +VEY++IL  VRSID+S N   GEIP ++T L  LQ+LNLS N   G+I
Sbjct: 820  FDNVLLVMKGKVVEYSTILKFVRSIDLSSNALCGEIPEEVTRLSELQSLNLSQNSLTGRI 879

Query: 283  PENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGAS 342
            PE IG++R +ES+DFS N+L G IPQSMS L+FL+HLNLS+N L G+IPS TQLQSFG S
Sbjct: 880  PEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFLSHLNLSDNRLRGRIPSGTQLQSFGPS 939

Query: 343  CFSGNDLCGAPL-PDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFI 401
             FSGN+LCG PL  +C+  N F  E       ED +  +  W  Y SM LGF+VGFW  +
Sbjct: 940  SFSGNELCGPPLSKNCSVDNKFHVEHER---EEDGNGLKGRW-FYVSMVLGFIVGFWGVV 995

Query: 402  GPLLVNRRWRYKYGHFLDGFVDRFCY 427
            GPL+ NRRWRY Y HFLD   D+  +
Sbjct: 996  GPLMFNRRWRYVYYHFLDRLRDQIWW 1021

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547794|ref|XP_002514954.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223546005|gb|EEF47508.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/450 (49%), Positives = 292/450 (64%), Gaps = 25/450 (5%)

Query: 2   LNLSNNQIYG---VIPYFDHR---------------PLPYQPFEFGLLDLSNNALSGSII 43
           LNLS+NQIYG    IPYF H                PLP+       L LSNN  SGSI 
Sbjct: 464 LNLSHNQIYGNIPDIPYFSHYYYYSTIDLSSNHFQGPLPHVSSNVTDLYLSNNLFSGSIS 523

Query: 44  HLICNGDNKSVIISL-KLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSS 102
           H +C   +K   + L  L  N+ SG I DCW +W +L+ + L +N F+GN+P SIGTL+ 
Sbjct: 524 HFVCRKIHKVKRMRLINLDNNFLSGQIRDCWSSWSNLEYIRLSNNNFSGNIPRSIGTLTF 583

Query: 103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKF 162
           L+SLHLRNN L+G  P+SL++C+SL+SLD+GEN   G IP W+G  FP +  LNLR NKF
Sbjct: 584 LKSLHLRNNSLSGEIPLSLRDCTSLVSLDLGENQLIGHIPPWMGASFPSMAFLNLRENKF 643

Query: 163 NGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIV 222
           +G +P +LC L  L+ILD+AHN+L+ TIP CI+  +AM T   SN   + Y + +     
Sbjct: 644 HGHIPPELCQLASLQILDLAHNDLARTIPSCIDKLSAMTT---SNPAASFYGYRSLYASA 700

Query: 223 FEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKI 282
            + A++V+KG +VEY SIL  V+S+D+S NN SG+IP  LT L GLQ+LNLS N   G+I
Sbjct: 701 SDYATIVSKGRIVEYFSILGFVKSLDLSGNNLSGDIPEVLTKLIGLQSLNLSDNLLSGRI 760

Query: 283 PENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGAS 342
           PE+IG M  +E++DFS N+LFG IPQSM+ L++L+ LNLS+N+LSG IP+ TQLQSF AS
Sbjct: 761 PEDIGAMVEVEAIDFSQNQLFGEIPQSMTKLTYLSDLNLSDNNLSGTIPTGTQLQSFNAS 820

Query: 343 CFSGND-LCGAPLPDCTEKNTFAPEVPNGNGNEDEDAD-EVDWLLYASMALGFVVGFWCF 400
            F+GN  LCG PL +        P   + N N   D   EV+   Y SMALGF+VGFW  
Sbjct: 821 SFTGNKGLCGPPLTNNCTVPGVQPRTESSNENRKSDGGFEVNG-FYVSMALGFIVGFWGA 879

Query: 401 IGPLLVNRRWRYKYGHFLDGFVDRFCYFVR 430
            GPL+VNR+WR+ Y HFLD   D+  + +R
Sbjct: 880 FGPLVVNRQWRHAYFHFLDHLWDKVRWGLR 909

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/450 (48%), Positives = 299/450 (66%), Gaps = 26/450 (5%)

Query: 1    ELNLSNNQIYGVIPY----------------FDH--RPLPYQPFEFGLLDLSNNALSGSI 42
             LNLS+NQIYG +P+                F+H   PLP    +   LDLS+N  SG I
Sbjct: 573  SLNLSHNQIYGELPHRIGTSPVADLVYVDLSFNHFDGPLPCLSSKVNTLDLSSNLFSGPI 632

Query: 43   IHLIC-NGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLS 101
             +L+C   +    + +L L+ N+ SG+IPDCWMNWP++  ++L++N  +G +P S+G+L+
Sbjct: 633  SNLLCCKMEEPYWLETLHLADNHLSGEIPDCWMNWPNMVSVDLENNSLSGVIPSSMGSLN 692

Query: 102  SLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK 161
             L+SLHLR N L+G+ P SL+NC+SL+++D+GEN F G+IP W+GE+    +I++L SN+
Sbjct: 693  LLQSLHLRKNNLSGVLPSSLQNCTSLLAIDLGENHFVGNIPGWIGEKLSDSIIISLGSNR 752

Query: 162  FNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNI 221
            F G +P  LC L++L ILD+AHNNLSGTIP+C  N +AMA   + N  N I Y       
Sbjct: 753  FQGQIPDNLCSLSYLTILDLAHNNLSGTIPKCFMNLSAMAA--NQNSSNPISYAFGHFGT 810

Query: 222  VFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGK 281
              E   ++ KG+L+EY+S L LV S+D+S NN +GEIP  +T+L GL+ LNLS+N   G+
Sbjct: 811  SLETLLLMIKGILLEYSSTLQLVTSMDLSDNNLAGEIPAGMTDLLGLRFLNLSNNQLKGR 870

Query: 282  IPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGA 341
            IP+NIGN+R +ES+D S N+L G IP SMS+L+FL++LNLSEN+L+G+IPSSTQLQSF  
Sbjct: 871  IPKNIGNLRLLESIDLSRNQLRGEIPPSMSALTFLSYLNLSENNLTGKIPSSTQLQSFDI 930

Query: 342  SCFSGNDLCGAPLPDCTEKNTFAPEVPNGNGNEDEDADEVDWL-LYASMALGFVVGFWCF 400
            S + GN LCG PL +    +       N N N + D  EVDWL  YASMA GFVVGFW  
Sbjct: 931  SSYDGNHLCGPPLLEICSTDATTSSDHNNNENNEGDGLEVDWLWFYASMAFGFVVGFWVV 990

Query: 401  IGPLLVNRRWRYKYGHFLDGFVDRFCYFVR 430
            +GPLL N+ WR++Y   L    +R  Y +R
Sbjct: 991  MGPLLFNKSWRFRYFRIL----ERLEYKIR 1016

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543959|ref|XP_002513042.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548053|gb|EEF49545.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/445 (48%), Positives = 291/445 (65%), Gaps = 30/445 (6%)

Query: 2   LNLSNNQIYGVIPYFDHR----------------PLPYQPFEFGLLDLSNNALSGSIIHL 45
           LN+S+NQI+GVIP    R                PLPY       L LSNN+ SG I   
Sbjct: 160 LNISHNQIHGVIPQEQVREYSGELIDLSSNRFQGPLPYIYSNARALYLSNNSFSGPISKF 219

Query: 46  ICNGDNKSVIIS-LKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104
           +C+  N+   +  L L  N+ SG++PDCWM+W  L V+NL +N  +G +P SIG LS L 
Sbjct: 220 LCHKMNELRFLEVLDLGDNHLSGELPDCWMSWDGLVVINLSNNNLSGTIPRSIGGLSRLE 279

Query: 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNG 164
           SLHLRNN L G  P SL+NC+ L +LD+G+N   G+IP W+GE FP ++IL+LRSNKF G
Sbjct: 280 SLHLRNNTLTGEIPPSLRNCTGLSTLDLGQNQLVGNIPRWIGETFPDMVILSLRSNKFQG 339

Query: 165 SLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNI--- 221
            +P +LC ++ L ILD+A NNLSGTIP+C+NNF+AM + + S         +  G+    
Sbjct: 340 DVPKKLCLMSSLYILDLADNNLSGTIPKCLNNFSAMVSRDDS------IGMLLEGDASSW 393

Query: 222 -VFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVG 280
             +E   +V KG +  Y+SIL  VRSID+SKN  SGEIP +  +L+GLQ+LNLSHN   G
Sbjct: 394 PFYESMFLVMKGKMDGYSSILKFVRSIDLSKNKLSGEIPEETISLKGLQSLNLSHNLLTG 453

Query: 281 KIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFG 340
           +IP +IG+M S+ESLDFS N+LFG IP+SM+ L+FL+ LNLS N+L+G+IP+ TQLQSF 
Sbjct: 454 RIPTDIGDMESLESLDFSQNQLFGEIPRSMAKLTFLSFLNLSFNNLTGRIPTGTQLQSFS 513

Query: 341 ASCFSGN-DLCGAPLPDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWC 399
           +  F GN +LCG P+      ++  P   +G G +D++  EV+W  Y S+ALGFVVGFW 
Sbjct: 514 SFSFKGNKELCGPPVTMNCSGDSELPGTIDGRG-DDQNGQEVNW-FYVSVALGFVVGFWG 571

Query: 400 FIGPLLVNRRWRYKYGHFLDGFVDR 424
             GPL++NRRWR  Y  FLD   D+
Sbjct: 572 AFGPLVLNRRWRQVYFRFLDSLWDK 596

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/449 (48%), Positives = 291/449 (64%), Gaps = 33/449 (7%)

Query: 1    ELNLSNNQIYGVIPYFDHRPLPYQ-------------PF----EFGLLDLSNNALSGSII 43
            ++NLS+NQ++G IPY       Y              PF     FGL DLSNN+ SGSI 
Sbjct: 627  QINLSHNQMHGTIPYLSIDDSDYSLIDLSSNNFGGSMPFISSNPFGL-DLSNNSFSGSIS 685

Query: 44   HLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL 103
              +C       I  L L +N FSG+IPDCWMNW +  V+ L +NYF+GN+P SIGTLS L
Sbjct: 686  SFLCY--KPRTINVLNLGENLFSGEIPDCWMNWNYTNVIRLSNNYFSGNIPESIGTLSEL 743

Query: 104  RSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN 163
              L++RNN L+G  P+SLK+C+SL  LD+  N+  G I TW+G+ F   LILNLR NKF+
Sbjct: 744  SVLNIRNNNLSGEMPISLKHCTSLQVLDLSGNELSGEITTWMGQHFQGTLILNLRGNKFH 803

Query: 164  GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVF 223
            G +P +LC +T L ILD A+NNL+GTIPRCINNFTA+ +  +S  K+          + +
Sbjct: 804  GFIPEELCGMTALVILDFANNNLNGTIPRCINNFTALLS-GTSYLKDGKVLVDYGPTLTY 862

Query: 224  EDASVVTK-GLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKI 282
             ++S++ + G LVEY++ L  VRS+D S N  SGEIP ++T+L GL  LNLSHN   G+I
Sbjct: 863  SESSLIERNGKLVEYSTTLGFVRSLDFSNNKLSGEIPEEMTSLRGLLFLNLSHNSLTGRI 922

Query: 283  PENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGAS 342
            PENIG M++++ LDFS N+L G IPQSMSSL+FLN+LNLS N LSG IPSSTQLQSF +S
Sbjct: 923  PENIGAMKALQILDFSRNQLSGEIPQSMSSLTFLNNLNLSSNKLSGIIPSSTQLQSFDSS 982

Query: 343  CFSGNDLCGAPLPDCTEKNTFAPEVPN------GNGNEDEDADEVDWL-LYASMALGFVV 395
             FSGN+LCG PL      +   P++        GNG+     + +DW   Y S+A GFV+
Sbjct: 983  SFSGNNLCGPPLTQSCSGDGEKPDIEKRTTEDGGNGS----PEAIDWFYFYVSIAPGFVI 1038

Query: 396  GFWCFIGPLLVNRRWRYKYGHFLDGFVDR 424
            GFW  +GPL  N+RWR  Y +FL+   ++
Sbjct: 1039 GFWVVVGPLAFNKRWRRLYFNFLEDLWNK 1067

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/452 (46%), Positives = 284/452 (62%), Gaps = 32/452 (7%)

Query: 3    NLSNNQIYGVIPYF-----DHR-------------PLPYQPFEFGLLDLSNNALSGSIIH 44
            NLS+NQI+GVIP       D+R             P+PY       LDLS+N+ +GSII+
Sbjct: 626  NLSHNQIHGVIPNVPVVSNDYRITMFDMSSNNFRGPVPYFSSNLSALDLSSNSFTGSIIN 685

Query: 45   LICNGDNKSVIIS-LKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL 103
             +C    +   +  L L  N  SG+IPDCW++W  L  +NL +N FTGN+P SIGTLS L
Sbjct: 686  FLCYKMQEVKKMEVLNLGGNLLSGEIPDCWLSWQSLTAINLSNNKFTGNIPKSIGTLSFL 745

Query: 104  RSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN 163
             S+H  NN L+G  P+S++NC  L +LD   N   G IP+W+G+  P ++IL LR NK +
Sbjct: 746  ESVHFANNDLSGDIPLSIQNCRKLFTLDFSGNKLVGKIPSWIGKSIPDMIILILRGNKLH 805

Query: 164  GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSS------NQKNAIYYFVT 217
            G +P ++C +  L+ILD+A NN S  IP C +NF+ M  +N S      +Q N     V 
Sbjct: 806  GQIPEEICRMASLQILDLADNNFSSMIPSCFSNFSGMVKVNDSFGSLTFDQSN-----VG 860

Query: 218  RGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNF 277
               I+ + A +V KG + EY++IL  V++ID+S NN SGEIPM +T+L GLQ+L+ S N 
Sbjct: 861  PSPILIDSAILVIKGRVAEYSTILGFVKAIDLSNNNLSGEIPMNITSLVGLQSLSFSQNS 920

Query: 278  FVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQ 337
              G+IP++IG M+S+ES+DFS N LFG IP+S+SSL+FL+HLNLS N L+G+IPS TQL+
Sbjct: 921  LTGRIPKDIGAMQSLESIDFSQNHLFGEIPESISSLTFLSHLNLSNNKLTGKIPSGTQLR 980

Query: 338  SFGASCFSGNDLCGAPLP-DCTEKNTFAPEVPNGNGNEDEDADEVDWL-LYASMALGFVV 395
             F  S F  NDLCG PLP +C+++             EDE+  EVDW   + S+A GFVV
Sbjct: 981  GFDPSSFMDNDLCGPPLPLNCSKEGILHAPDDEKEREEDENGFEVDWFYFFVSIAPGFVV 1040

Query: 396  GFWCFIGPLLVNRRWRYKYGHFLDGFVDRFCY 427
            GFW  +GPL  NRRWR+ Y  FL    D+ C+
Sbjct: 1041 GFWLVVGPLCFNRRWRFAYFRFLYDLWDKICW 1072

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284749|gb|AEQ27746.1| receptor-like protein [Malus baccata]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/444 (46%), Positives = 273/444 (61%), Gaps = 19/444 (4%)

Query: 2   LNLSNNQIYGVIPYFDHRP--------------LPYQPFEFGLLDLSNNALSGSIIHLIC 47
           LNLS+NQ+YG I      P              LP  P     LDLSN++ SGS+ H  C
Sbjct: 536 LNLSHNQLYGQIQNIVAGPSSAVDLSSNQFTGALPIVPTSLMWLDLSNSSFSGSVFHFFC 595

Query: 48  NG-DNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106
           +  D    +  L+L  N+ +G +PDCWM+WP L  LNL++N  TGN+P+S+G L  L SL
Sbjct: 596 DRPDEPKQLGILRLGNNFLTGKVPDCWMSWPSLAFLNLENNNLTGNVPMSMGYLDWLESL 655

Query: 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSL 166
           HLRNN L G  P SL+NC+SL  +D+ EN F GSIP W+G+    L +LNLRSNKF G +
Sbjct: 656 HLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLNVLNLRSNKFEGDI 715

Query: 167 PVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDA 226
           P ++C+L  L+ILD+AHN LSG IPRC +N +AMA  + S    + +  V  G  + E+A
Sbjct: 716 PNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSAMANFSQSFSPTSFWGMVASG--LTENA 773

Query: 227 SVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI 286
            +VTKG+ +EY  IL  V+ +D+S N   GEIP +LT L  LQ LNLS+N F G+IP  I
Sbjct: 774 ILVTKGMEMEYTKILGFVKGMDLSCNFMYGEIPEELTGLLALQYLNLSNNRFTGRIPSKI 833

Query: 287 GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSG 346
           G+M  +ESLDFS N+L G IP SM+ L+FL+HLNLS N+L+G+IP STQLQS   S F G
Sbjct: 834 GSMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVG 893

Query: 347 NDLCGAPL-PDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFIGPLL 405
           N+LCGAPL  +C+E     P     +G       E +W  Y S+ +GF  GFW  +G LL
Sbjct: 894 NELCGAPLNKNCSENGVIPPPTVEHDGGGGYSLVEDEW-FYVSLGVGFFTGFWIVLGSLL 952

Query: 406 VNRRWRYKYGHFLDGFVDRFCYFV 429
           VN  W       L+  V +  + +
Sbjct: 953 VNMPWSILLSQLLNRIVLKMYHVI 976

Source: Malus baccata

Species: Malus baccata

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14330716|emb|CAC40826.1| HcrVf2 protein [Malus floribunda] gi|350284757|gb|AEQ27750.1| receptor-like protein [Malus micromalus]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/444 (46%), Positives = 273/444 (61%), Gaps = 19/444 (4%)

Query: 2   LNLSNNQIYGVIPYFDHRP--------------LPYQPFEFGLLDLSNNALSGSIIHLIC 47
           LNLS+NQ+YG I      P              LP  P     LDLSN++ SGS+ H  C
Sbjct: 536 LNLSHNQLYGQIQNIVAGPSSAVDLSSNQFTGALPIVPTSLMWLDLSNSSFSGSVFHFFC 595

Query: 48  NG-DNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106
           +  D    +  L+L  N+ +G +PDCWM+WP L  LNL++N  TGN+P+S+G L  L SL
Sbjct: 596 DRPDEPKQLGILRLGNNFLTGKVPDCWMSWPSLAFLNLENNNLTGNVPMSMGYLDWLESL 655

Query: 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSL 166
           HLRNN L G  P SL+NC+SL  +D+ EN F GSIP W+G+    L +LNLRSNKF G +
Sbjct: 656 HLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLNVLNLRSNKFEGDI 715

Query: 167 PVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDA 226
           P ++C+L  L+ILD+AHN LSG IPRC +N +AMA  + S    + +  V  G  + E+A
Sbjct: 716 PNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSAMANFSQSFSPTSFWGMVASG--LTENA 773

Query: 227 SVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI 286
            +VTKG+ +EY  IL  V+ +D+S N   GEIP +LT L  LQ LNLS+N F G+IP  I
Sbjct: 774 ILVTKGMEMEYTKILGFVKGMDLSCNFMYGEIPEELTGLLALQYLNLSNNRFTGRIPSKI 833

Query: 287 GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSG 346
           G+M  +ESLDFS N+L G IP SM+ L+FL+HLNLS N+L+G+IP STQLQS   S F G
Sbjct: 834 GSMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVG 893

Query: 347 NDLCGAPL-PDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFIGPLL 405
           N+LCGAPL  +C+E     P     +G       E +W  Y S+ +GF  GFW  +G LL
Sbjct: 894 NELCGAPLNKNCSENGVIPPPTVEHDGGGGYSLVEDEW-FYVSLGVGFFTGFWIVLGSLL 952

Query: 406 VNRRWRYKYGHFLDGFVDRFCYFV 429
           VN  W       L+  V +  + +
Sbjct: 953 VNMPWSILLSQLLNRIVLKMYHVI 976

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970605|gb|ACJ03065.1| HB03p [Malus floribunda]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/446 (46%), Positives = 277/446 (62%), Gaps = 22/446 (4%)

Query: 2   LNLSNNQIYGVIPYFDHRP--------------LPYQPFEFGLLDLSNNALSGSIIHLIC 47
           LNLS+NQ+YG I      P              LP  P     LDLSN++ SGS+ H  C
Sbjct: 533 LNLSHNQLYGEIQNIVVAPYSVVDLGSNQFTGALPIVPTSLAWLDLSNSSFSGSVFHFFC 592

Query: 48  NGDNKSVIIS-LKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106
           +   ++  +S L L  N  +G +PDCW +W +L  LNL++N  TGN+P+S+  L  L SL
Sbjct: 593 DRPEEAKQLSILHLGNNLLTGKVPDCWRSWQYLAALNLENNLLTGNVPMSMRYLQQLESL 652

Query: 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSL 166
           HLRNN L G  P SL+NCSSL  +D+G N F GSIP W+G+   RL +LNLRSN+F G +
Sbjct: 653 HLRNNHLYGELPHSLQNCSSLSVVDLGGNGFVGSIPIWMGKSLSRLNVLNLRSNEFEGDI 712

Query: 167 PVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDA 226
           P ++CHL  L+ILD+A N LSGTIPRC +N +AMAT++ S   ++I + ++      E +
Sbjct: 713 PSEICHLKNLQILDLARNKLSGTIPRCFHNLSAMATLSES--FSSITFMISTS---VEAS 767

Query: 227 SVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI 286
            VVTKG+ VEY  IL  V+ +D+S N   GEIP +LT+L  LQ+LNLSHN F G++P  I
Sbjct: 768 VVVTKGIEVEYTEILGFVKGMDLSCNFMYGEIPEELTDLLALQSLNLSHNRFTGRVPSKI 827

Query: 287 GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSG 346
           GNM  +ESLDFS N+L G IP SM++L+FL+HLNLS N+L+G+IP STQLQS   S F G
Sbjct: 828 GNMAMLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPKSTQLQSLDQSSFVG 887

Query: 347 NDLCGAPL-PDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFIGPLL 405
           N+LCGAPL  +C+      P     +G       E +W  Y ++A+GF  GFW  +G LL
Sbjct: 888 NELCGAPLNKNCSANGVIPPPTVEQDGGGGYRLLEDEW-FYVNLAVGFFTGFWIVLGSLL 946

Query: 406 VNRRWRYKYGHFLDGFVDRFCYFVRK 431
           VN  W        +  V +  + + K
Sbjct: 947 VNMPWSILLSQLQNRMVLKMYHVIVK 972

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284751|gb|AEQ27747.1| receptor-like protein [Malus baccata]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/444 (46%), Positives = 273/444 (61%), Gaps = 19/444 (4%)

Query: 2   LNLSNNQIYGVIPYFDHRP--------------LPYQPFEFGLLDLSNNALSGSIIHLIC 47
           LNLS+NQ+YG I      P              LP  P     LDLSN++ SGS+ H  C
Sbjct: 536 LNLSHNQLYGQIQNIVAGPSSAVDLSSNQFTGALPIVPTSLMWLDLSNSSFSGSVFHFFC 595

Query: 48  NG-DNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106
           +  D    +  L+L  N+ +G +PDCWM+WP L  LNL++N  TGN+P+S+G L  L SL
Sbjct: 596 DRPDEPKQLGILRLGNNFLTGKVPDCWMSWPSLAFLNLENNNLTGNVPMSMGYLDWLESL 655

Query: 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSL 166
           HLRNN L G  P SL+NC+SL  +D+ EN F GSIP W+G+    L +LNLRSNKF G +
Sbjct: 656 HLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLNVLNLRSNKFEGDI 715

Query: 167 PVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDA 226
           P ++C+L  L+ILD+AHN LSG IPRC +N +AMA  + S    + +  V  G  + E+A
Sbjct: 716 PNEVCYLKSLQILDLAHNELSGMIPRCFHNLSAMANFSQSFSPTSFWGMVASG--LTENA 773

Query: 227 SVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI 286
            +VTKG+ +EY  IL  V+ +D+S N   GEIP +LT L  LQ LNLS+N F G+IP  I
Sbjct: 774 ILVTKGMEMEYTKILGFVKGMDLSCNFMYGEIPEELTGLLALQYLNLSNNRFTGRIPSKI 833

Query: 287 GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSG 346
           G+M  +ESLDFS N+L G IP SM+ L+FL+HLNLS N+L+G+IP STQLQS   S F G
Sbjct: 834 GSMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVG 893

Query: 347 NDLCGAPL-PDCTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFIGPLL 405
           N+LCGAPL  +C+E     P     +G       E +W  Y S+ +GF  GFW  +G LL
Sbjct: 894 NELCGAPLNKNCSENGVIPPPTVEHDGGGGYSLVEDEW-FYVSLGVGFFTGFWIVLGSLL 952

Query: 406 VNRRWRYKYGHFLDGFVDRFCYFV 429
           VN  W       L+  V +  + +
Sbjct: 953 VNMPWSILLSQLLNRIVLKMYHVI 976

Source: Malus baccata

Species: Malus baccata

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.926	0.425	0.327	1.3e-42
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.863	0.427	0.339	1.3e-42
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.912	0.441	0.326	1.8e-42
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.872	0.641	0.320	3.2e-42
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.833	0.446	0.333	3.3e-42
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.872	0.427	0.333	4.6e-42
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.872	0.510	0.335	6e-42
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.870	0.423	0.340	6e-42
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.916	0.414	0.325	1.2e-41
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.866	0.442	0.330	1.4e-41

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-42, P = 1.3e-42
 Identities = 141/430 (32%), Positives = 208/430 (48%)

Query:     2 LNLSNNQIYGVIPYFDHRPLPY--QPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLK 59
             LNLSNN             L    +P    L   SNN  +G I   IC    +S + +L 
Sbjct:   520 LNLSNNTFISFESSSKKHGLSSVRKPSMIHLF-ASNNNFTGKIPSFICG--LRS-LNTLD 575

Query:    60 LSKNYFSGDIPDCWMNWPH-LQVLNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAGIFP 118
             LS+N ++G IP C       L VLNL  N  +G LP  I                 G  P
Sbjct:   576 LSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHI--FESLRSLDVGHNLLVGKLP 633

Query:   119 VSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRI 178
              SL   S+L  L++  N    + P W+     +L +L LRSN F+G  P+       LRI
Sbjct:   634 RSLIRFSNLEVLNVESNRINDTFPFWLSS-LSKLQVLVLRSNAFHG--PIHEATFPELRI 690

Query:   179 LDVAHNNLSGTIP-RCINNFTAMATINSS-NQKNAIYYFVTRGNIVFEDASVV-TKGLLV 235
             +D++HN+ +GT+P      ++AM+++  + +Q N  Y       + ++D+ V+  KGL +
Sbjct:   691 IDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYM---GSGLYYQDSMVLMNKGLAM 747

Query:   236 EYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESL 295
             E   IL +  ++D S N F GEIP  +  L+ L  LNLS+N F G IP ++GN+ ++ESL
Sbjct:   748 ELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESL 807

Query:   296 DFSTNRLFGRIPQXXXXXXXXXXXXXXXXDLSGQIPSSTQLQSFGASCFSGN-DLCGAPL 354
             D S N+L G IPQ                 L+G +P  TQ +    S F  N  L G  L
Sbjct:   808 DVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSL 867

Query:   355 PD-CTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVG--FWCFIGPLLVNRRWR 411
              + C +K+T A +       E+ED +E+ W+   + A+GF+ G  F   IG +LV+    
Sbjct:   868 DEVCRDKHTPASQQNETTETEEEDEEEISWI---AAAIGFIPGIVFGLTIGYILVS---- 920

Query:   412 YKYGHFLDGF 421
             YK   F++ F
Sbjct:   921 YKPEWFMNPF 930

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.3e-42, P = 1.3e-42
 Identities = 136/401 (33%), Positives = 193/401 (48%)

Query:    20 PLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPH- 78
             P P     FG    SNN  SG I   IC+   +S+II L LS N FSG IP C   +   
Sbjct:   477 PKPSMKHFFG----SNNNFSGKIPSFICS--LRSLII-LDLSNNNFSGAIPPCVGKFKST 529

Query:    79 LQVLNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAGIFPVSLKNCSSLISLDIGENDFF 138
             L  LNL  N  +G+LP +I                 G  P SL + S+L  L++  N   
Sbjct:   530 LSDLNLRRNRLSGSLPKTI--IKSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRIN 587

Query:   139 GSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPR-CINNF 197
              + P W+     +L +L LRSN F+G   +       LRI+D++ N+ +GT+P  C   +
Sbjct:   588 DTFPFWLSS-LKKLQVLVLRSNAFHGR--IHKTRFPKLRIIDISRNHFNGTLPSDCFVEW 644

Query:   198 TAMATINSSNQKNAIYYFVTRGNIVFEDASVV-TKGLLVEYNSILNLVRSIDISKNNFSG 256
             T M ++  +  +    Y    G+  + D+ V+  KGL +E   IL +  ++D S N F G
Sbjct:   645 TGMHSLEKNEDRFNEKYM---GSGYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEG 701

Query:   257 EIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQXXXXXXXX 316
             EIP  +  L+ L  LNLS N F G IP ++GN+R +ESLD S N+L G IPQ        
Sbjct:   702 EIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYL 761

Query:   317 XXXXXXXXDLSGQIPSSTQLQSFGASCFSGN-DLCGAPLPDCTEKNTFAPEVPNGNGNED 375
                      L GQ+P  TQ ++  AS F  N  LCG PL +C  +    P  P+G     
Sbjct:   762 AYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEEC--RVVHEP-TPSGESETL 818

Query:   376 EDADEVDWLLYA-SMALGFVVGFWCFIGPLLVNR--RWRYK 413
             E    + W+  A     G V+G    IG ++++   RW +K
Sbjct:   819 ESEQVLSWIAAAIGFTPGIVLGLT--IGHIVLSSKPRWFFK 857

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 1.8e-42, P = 1.8e-42
 Identities = 140/429 (32%), Positives = 207/429 (48%)

Query:     2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
             LNLSNN   G       RP   +P    LL  SNN  +G I   IC  + +S + +L LS
Sbjct:   477 LNLSNNTFIGF-----QRPTKPEPSMAYLLG-SNNNFTGKIPSFIC--ELRS-LYTLDLS 527

Query:    62 KNYFSGDIPDCWMNWP-HLQVLNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAGIFPVS 120
              N FSG IP C  N   +L  LNL  N  +G  P  I                 G  P S
Sbjct:   528 DNNFSGSIPRCMENLKSNLSELNLRQNNLSGGFPEHI--FESLRSLDVGHNQLVGKLPRS 585

Query:   121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
             L+  S+L  L++  N      P W+     +L +L LRSN F+G  P+       LRI+D
Sbjct:   586 LRFFSNLEVLNVESNRINDMFPFWLSS-LQKLQVLVLRSNAFHG--PINQALFPKLRIID 642

Query:   181 VAHNNLSGTIP-RCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVV-TKGLLVEYN 238
             ++HN+ +G++P      ++ M+++ +    + + Y    G+  ++D+ V+  KG+  E  
Sbjct:   643 ISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSNVNYL---GSGYYQDSMVLMNKGVESELV 699

Query:   239 SILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFS 298
              IL +  ++D S N F GEIP  +  L+ L  LNLS+N F G IP +IGN+ ++ESLD S
Sbjct:   700 RILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDVS 759

Query:   299 TNRLFGRIPQXXXXXXXXXXXXXXXXDLSGQIPSSTQLQSFGASCFSGN-DLCGAPLPD- 356
              N+L+G IPQ                 L+G +P   Q  +   S F GN  L G+ L + 
Sbjct:   760 QNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEV 819

Query:   357 CTEKNTFAP----EVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFIGPLLVNRRWRY 412
             C + +T A     E P     E+ED D + W+  A++  G  + F    G +LV+    Y
Sbjct:   820 CRDIHTPASHQQFETPQ---TEEEDEDLISWIA-AAIGFGPGIAFGLMFGYILVS----Y 871

Query:   413 KYGHFLDGF 421
             K   F++ F
Sbjct:   872 KPEWFMNPF 880

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 130/406 (32%), Positives = 189/406 (46%)

Query:    22 PYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV 81
             P  P     L   NN+ +G I   +CN  +  V   L LS N F+G IP C  N+    +
Sbjct:   189 PNPPVSIINLSAWNNSFTGDIPLSVCNRTSLDV---LDLSYNNFTGSIPPCMGNFT---I 242

Query:    82 LNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAGIFPVSLKNCSSLISLDIGENDFFGSI 141
             +NL  N   GN+P    +               G  P SL NCS +  L +  N    S 
Sbjct:   243 VNLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLNCSFIRFLSVDHNRINDSF 302

Query:   142 PTWVGERFPRLLILNLRSNKFNGSL--PVQLCHLTF--LRILDVAHNNLSGTIPRCINNF 197
             P W+ +  P L +L LRSN F+G +  P     L F  L+IL+++HN  +G++P    N+
Sbjct:   303 PLWL-KALPNLKVLTLRSNSFHGPMSPPDDQSSLAFPKLQILEISHNRFTGSLP---TNY 358

Query:   198 TAMATINSSNQ--KNAIYYF-VTRGNIVFEDA-SVVTKGLLVEYNSILNLVRSIDISKNN 253
              A  ++ S     +  +Y    +    V+ED   +  KGL +E   +L    +ID S N 
Sbjct:   359 FANWSVKSLKMYDEERLYMGDYSSDRFVYEDTLDLQYKGLYMEQGKVLTFYSAIDFSGNK 418

Query:   254 FSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQXXXXX 313
               GEIP  +  L+ L  LNLS+N F G IP +  N+  +ESLD S N+L G IPQ     
Sbjct:   419 LEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEIPQELGRL 478

Query:   314 XXXXXXXXXXXDLSGQIPSSTQLQSFGASCFSGND-LCGAPLPDCTEKNTFAPEVPNGNG 372
                         L+G+IP  TQ+     S F GN  LCG PL    E++    + P+   
Sbjct:   479 SYLAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPL----EESCLREDAPSTQE 534

Query:   373 NEDEDADEVDWLLYASMALGFVVGFWCFIGPLLVNRRWRYKYGHFL 418
              E+E+ + ++W   A++  G  V F   IG ++      YK G F+
Sbjct:   535 PEEEEEEILEWRA-AAIGYGPGVLFGLAIGHVVA----LYKPGWFI 575

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 3.3e-42, P = 3.3e-42
 Identities = 129/387 (33%), Positives = 178/387 (45%)

Query:    20 PLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPH- 78
             P P  P    LL   NN+ +G+I    CN   +S +  L LS N  +G IP C  ++   
Sbjct:   379 PFPKPPLSINLLSAWNNSFTGNIPLETCN---RSSLAILDLSYNNLTGPIPRCLSDFQES 435

Query:    79 LQVLNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAGIFPVSLKNCSSLISLDIGENDFF 138
             L V+NL  N   G+LP                    G  P SL NCS L  + +  N   
Sbjct:   436 LIVVNLRKNNLEGSLPDIFSDGALLRTLDVGYNQLTGKLPRSLLNCSMLRFVSVDHNKIK 495

Query:   139 GSIPTWVGERFPRLLILNLRSNKFNGSL-PVQLCHLTF--LRILDVAHNNLSGTIPRCIN 195
              + P W+ +  P L  L LRSNKF+G + P     L F  LRIL+++ NN +G++P   N
Sbjct:   496 DTFPFWL-KALPDLQALTLRSNKFHGPISPPDRGPLAFPKLRILEISDNNFTGSLPP--N 552

Query:   196 NFTAM-ATINSSNQKNAIYYF-VTRGNIVFEDA-SVVTKGLLVEYNSILNLVRSIDISKN 252
              F    A+    N+   IY         ++ED   +  KGL +E   +L    +ID S N
Sbjct:   553 YFVNWEASSLQMNEDGRIYMGDYNNPYYIYEDTVDLQYKGLFMEQGKVLTSYATIDFSGN 612

Query:   253 NFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQXXXX 312
                G+IP  +  L+ L  LNLS+N F G IP ++ N+  +ESLD S N+L G IP     
Sbjct:   613 KLEGQIPESIGLLKALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQLSGTIPNGLKT 672

Query:   313 XXXXXXXXXXXXDLSGQIPSSTQLQSFGASCFSGN-DLCGAPLPDCTEKNTFAPEVPNGN 371
                          L G+IP  TQ+     S F GN  LCG PL    + + FAP  P   
Sbjct:   673 LSFLAYISVAHNQLIGEIPQGTQITGQSKSSFEGNAGLCGLPL----QGSCFAPPTPQPK 728

Query:   372 GNEDEDADEVDWLLYASMALGFVVGFW 398
               EDED + ++W          V+G+W
Sbjct:   729 -EEDEDEEVLNWK-------AVVIGYW 747

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 4.6e-42, P = 4.6e-42
 Identities = 135/405 (33%), Positives = 190/405 (46%)

Query:     2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
             LNL +N + G +P   H PL    F        NN   G I   IC+   +S++  L LS
Sbjct:   469 LNLLSNNLEGALP---HLPLSVNYFS-----ARNNRYGGDIPLSICS--RRSLVF-LDLS 517

Query:    62 KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAGIFPVSL 121
              N F+G IP C  N+    +LNL  N   G++P +                  G  P SL
Sbjct:   518 YNNFTGPIPPCPSNF---LILNLRKNNLEGSIPDTYYADAPLRSLDVGYNRLTGKLPRSL 574

Query:   122 KNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSL-PVQLCHLTF--LRI 178
              NCS+L  L +  N    + P  + +  P+L +L L SN F G L P     L F  LRI
Sbjct:   575 LNCSALQFLSVDHNGIKDTFPFSL-KALPKLQVLILHSNNFYGPLSPPNQGSLGFPELRI 633

Query:   179 LDVAHNNLSGTIPR-CINNFTAMA-TINSSNQKNAIYYFVTRGNIVFEDASVVT---KGL 233
             L++A N  +G++P     N+ A + T+N       +Y  V  G   F     +    KGL
Sbjct:   634 LEIAGNKFTGSLPPDFFENWKASSLTMNEDQGLYMVYNKVVYGTYYFTSLEAIDLQYKGL 693

Query:   234 LVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIE 293
              +E N +L+   +ID S N   GEIP  +  L+ L  LNLS+N F G IP ++ N++ IE
Sbjct:   694 SMEQNRVLSSSATIDFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLKKIE 753

Query:   294 SLDFSTNRLFGRIPQXXXXXXXXXXXXXXXXDLSGQIPSSTQLQSFGASCFSGN-DLCGA 352
             SLD S+N+L G IP                  L+G+IP  TQ+     S F GN  LCG 
Sbjct:   754 SLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGL 813

Query:   353 PLPD-CTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVG 396
             PL + C   N  AP   +    E+E+ +E   L +  + +G+ VG
Sbjct:   814 PLQESCFGTN--APPAQHPKEEEEEEEEEEQVLNWKGVGIGYGVG 856

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 6.0e-42, P = 6.0e-42
 Identities = 136/405 (33%), Positives = 200/405 (49%)

Query:    20 PLPYQPF-EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPH 78
             P P  P      L  SNN  SG I   IC  DN  +++   LS N FSG IP C+ N  H
Sbjct:   341 PFPLLPVVSMNYLFSSNNRFSGEIPKTICELDNLRILV---LSNNNFSGSIPRCFENL-H 396

Query:    79 LQVLNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAGIFPVSLKNCSSLISLDIGENDFF 138
             L VL+L +N  +G  P                   +G  P SL NCS +  L++ +N   
Sbjct:   397 LYVLHLRNNNLSGIFPEE-AISHHLQSFDVGHNLFSGELPKSLINCSDIEFLNVEDNRIN 455

Query:   139 GSIPTWVGERFPRLLILNLRSNKFNGSL--PVQLCHLTFLRILDVAHNNLSGTIPR-CIN 195
              + P+W+ E  P L IL LRSN+F G +  P      + LRI D++ N  +G +P     
Sbjct:   456 DTFPSWL-ELLPNLQILVLRSNEFYGPIFSPGDSLSFSRLRIFDISENRFTGVLPSDYFV 514

Query:   196 NFTAMATINSSNQKNAIYYFVTRGNIVFEDASV--VTKGLLVEY-NSILNLVRSIDISKN 252
              ++ M+++   + +  I Y VT  +  F   SV  + KGL +E   S   + ++ID+S N
Sbjct:   515 GWSVMSSVVDIDGR-IIQYTVTGIDRDFYHKSVALINKGLKMELVGSGFTIYKTIDVSGN 573

Query:   253 NFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQXXXX 312
                G+IP  +  L+ +  L++S+N F G IP ++ N+ +++SLD S NRL G IP     
Sbjct:   574 RLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGK 633

Query:   313 XXXXXXXXXXXXDLSGQIPSSTQLQSFGASCFSGND-LCGAPLPDCTEKNTFAPEVPNGN 371
                          L G IP +TQ+Q+  +S F+ N  LCGAPL    +K     E     
Sbjct:   634 LTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENPGLCGAPL---LKKCGGEEEATKQE 690

Query:   372 GNED-EDADEV-DWLLYASMALGFVVGFWC--FIGPLLVN--RRW 410
              +ED E+ D+V  W+   + A+G+V G  C   IG +LV+  R W
Sbjct:   691 QDEDKEEEDQVFSWI---AAAIGYVPGVVCGLTIGHILVSHKRDW 732

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 6.0e-42, P = 6.0e-42
 Identities = 138/405 (34%), Positives = 190/405 (46%)

Query:     2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
             L+L  N + G +P   H PL      F  +D   N   G I   ICN  +  V   L LS
Sbjct:   467 LSLDTNSLEGALP---HLPLSIN--YFSAID---NRFGGDIPLSICNRSSLDV---LDLS 515

Query:    62 KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAGIFPVSL 121
              N FSG IP C  N   L  L L  N   G++P                    G  P SL
Sbjct:   516 YNNFSGQIPPCLSN---LLYLKLRKNNLEGSIPDKYYVDTPLRSFDVGYNRLTGKLPRSL 572

Query:   122 KNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSL-PVQLCHLTF--LRI 178
              NCS+L  L +  N    + P ++ +  P+L +L L SN+F G L P     L F  LRI
Sbjct:   573 INCSALQFLSVDHNGIKDTFPFYL-KALPKLQVLLLSSNEFYGPLSPPNQGPLGFPELRI 631

Query:   179 LDVAHNNLSGTIPR-CINNFTAMA-TINSSNQKNAIYYFVTRGNI---VFEDASVVTKGL 233
             L++A N L+G++P     N+ A + T+N       +Y  V  GN     +E   +  KGL
Sbjct:   632 LEIAGNKLTGSLPPDFFVNWKASSHTMNEDLGLYMVYSKVIFGNYHLTYYETIDLRYKGL 691

Query:   234 LVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIE 293
              +E  ++L    +ID+S N   GEIP  L  L+ L  LNLS+N F G IP ++ N++ IE
Sbjct:   692 SMEQENVLTSSATIDLSGNRLEGEIPESLGLLKALIALNLSNNAFTGHIPLSLANLKKIE 751

Query:   294 SLDFSTNRLFGRIPQXXXXXXXXXXXXXXXXDLSGQIPSSTQLQSFGASCFSGN-DLCGA 352
             SLD S+N+L G IP                  L+G+IP  TQ+     S F GN  LCG 
Sbjct:   752 SLDLSSNQLSGTIPNGLGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGF 811

Query:   353 PLPD-CTEKNTFAPEVPNGNGNEDEDADEVDWLLYASMALGFVVG 396
             PL + C   N    + P      +ED  E++W    ++A+G+ VG
Sbjct:   812 PLQESCFGTNAPPAQKPKEEEEAEEDEQELNW---KAVAIGYGVG 853

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-41, P = 1.2e-41
 Identities = 141/433 (32%), Positives = 210/433 (48%)

Query:     2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
             +NLSNN + G       RP   +P    LL  SNN   G I   IC    +S + +L LS
Sbjct:   539 VNLSNNTLIGF-----QRPSKPEPSLLYLLG-SNNNFIGKIPSFICG--LRS-LNTLDLS 589

Query:    62 KNYFSGDIPDCWMNWPH-LQVLNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAGIFPVS 120
              N F+G IP C  +    L VLNL  N+ +G LP  I                 G  P S
Sbjct:   590 DNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQI--FEILRSLDVGHNQLVGKLPRS 647

Query:   121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
             L   S+L  L++  N    + P W+    P+L +L LRSN F+G  P+       LRI+D
Sbjct:   648 LSFFSTLEVLNVESNRINDTFPFWLSS-LPKLQVLVLRSNAFHG--PIHEATFPELRIID 704

Query:   181 VAHNNLSGTIP-RCINNFTAMATINSS-NQKNAIYYFVTRGNIVFEDASVV-TKGLLVEY 237
             ++HN  +GT+P      ++AM+++  + +Q N  Y       + ++D+ V+  KG+ +E 
Sbjct:   705 ISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYM---GSGLYYQDSMVLMNKGVAMEL 761

Query:   238 NSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDF 297
               IL +  ++D S N F GEIP  +  L+ L  L+LS+N F G +P ++GN+ ++ESLD 
Sbjct:   762 VRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDV 821

Query:   298 STNRLFGRIPQXXXXXXXXXXXXXXXXDLSGQIPSSTQLQSFGASCFSGN-DLCGAPLPD 356
             S N+L G IPQ                 L+G +P   Q  +   S F  N  L G+ L +
Sbjct:   822 SKNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDNLGLFGSSLEE 881

Query:   357 -CTEKNTFAP----EVPNGNGNEDEDADEVDWLLYASMALGFVVGFWCFIGPLLVNRRWR 411
              C + +T A     E P     E+ED D + W+  A++  G  + F    G +LV+    
Sbjct:   882 VCRDIHTPASHQQFETPE---TEEEDEDLISWIA-AAIGFGPGIAFGLMFGYILVS---- 933

Query:   412 YKYGHFLDGFVDR 424
             YK   F++ F DR
Sbjct:   934 YKPEWFMNPF-DR 945

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 131/396 (33%), Positives = 187/396 (47%)

Query:    31 LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWP-HLQVLNLDDNYF 89
             LDL++N+  G I ++IC     S +  L LS N FSG IP C  N+   ++ LNL DN F
Sbjct:   448 LDLNSNSFQGPIPYMICK---LSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNF 504

Query:    90 TGNLPISIGTXXXXXXXXXXXXXXAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERF 149
             +G LP                    G FP SL NC +L  +++  N      P+W+ E  
Sbjct:   505 SGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESL 563

Query:   150 PRLLILNLRSNKFNGSLPVQLCHLTF--LRILDVAHNNLSGTIPRC-INNFTAMATINSS 206
             P L +LNLRSNKF G L  +   + F  LRI+D++HNN SGT+P    +N+  M T+ + 
Sbjct:   564 PSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTL-TE 622

Query:   207 NQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE 266
                  +  F    +  + +  +V KG+ + +  I    R+ID S N  +G IP  L  L+
Sbjct:   623 EMDQYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLK 682

Query:   267 GLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQXXXXXXXXXXXXXXXXDL 326
              L+ LNLS N F   IP  + N+  +E+LD S N+L G+IPQ                 L
Sbjct:   683 ELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLL 742

Query:   327 SGQIPSSTQLQSFGASCFSGND-LCGAPLPD-CTEKNTFAP--EVPNGNGNEDEDADEVD 382
              G +P  TQ Q    S F  N  L G  L D C +     P  ++P      +E+    +
Sbjct:   743 QGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENM--FN 798

Query:   383 WLLYASMALGFVVGFWCFIGPLLV--NRRW-RYKYG 415
             W+  A++A G  V     IG      N  W   K+G
Sbjct:   799 WVA-AAIAYGPGVLCGLVIGHFYTSHNHEWFTEKFG 833

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031679 hypothetical protein (1024 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	433
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-40
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-31
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  153 bits (389), Expect = 2e-40
 Identities = 119/338 (35%), Positives = 170/338 (50%), Gaps = 18/338 (5%)

Query: 2   LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
           ++LS   I G I     R LPY       ++LSNN LSG I   I      S +  L LS
Sbjct: 74  IDLSGKNISGKISSAIFR-LPY----IQTINLSNNQLSGPIPDDIFT--TSSSLRYLNLS 126

Query: 62  KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSL 121
            N F+G IP   +  P+L+ L+L +N  +G +P  IG+ SSL+ L L  N L G  P SL
Sbjct: 127 NNNFTGSIPRGSI--PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 122 KNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDV 181
            N +SL  L +  N   G IP  +G +   L  + L  N  +G +P ++  LT L  LD+
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 182 AHNNLSGTIPRCINNFTAMATINSSNQK------NAIYYFVTRGNIVFEDASVVTKGLLV 235
            +NNL+G IP  + N   +  +     K       +I+      ++   D S+   G + 
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL--SGEIP 301

Query: 236 EYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESL 295
           E    L  +  + +  NNF+G+IP+ LT+L  LQ L L  N F G+IP+N+G   ++  L
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

Query: 296 DFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS 333
           D STN L G IP+ + S   L  L L  N L G+IP S
Sbjct: 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  135 bits (341), Expect = 4e-34
 Identities = 113/356 (31%), Positives = 172/356 (48%), Gaps = 17/356 (4%)

Query: 2   LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
           +NLSNNQ+ G IP      +         L+LSNN  +GSI        +   + +L LS
Sbjct: 98  INLSNNQLSGPIP----DDIFTTSSSLRYLNLSNNNFTGSI-----PRGSIPNLETLDLS 148

Query: 62  KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSL 121
            N  SG+IP+   ++  L+VL+L  N   G +P S+  L+SL  L L +N+L G  P  L
Sbjct: 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL 208

Query: 122 KNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDV 181
               SL  + +G N+  G IP  +G     L  L+L  N   G +P  L +L  L+ L +
Sbjct: 209 GQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 182 AHNNLSGTIPRCINNFTAMATINSSNQ--KNAIYYFVTRGN---IVFEDASVVTKGLLVE 236
             N LSG IP  I +   + +++ S+      I   V +     I+   ++  T  + V 
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Query: 237 YNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLD 296
             S+  L + + +  N FSGEIP  L     L  L+LS N   G+IPE + +  ++  L 
Sbjct: 328 LTSLPRL-QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386

Query: 297 FSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDLCG 351
             +N L G IP+S+ +   L  + L +N  SG++PS  T+L        S N+L G
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  133 bits (337), Expect = 1e-33
 Identities = 111/372 (29%), Positives = 169/372 (45%), Gaps = 53/372 (14%)

Query: 4   LSNNQIYGVIPY-------FDHRPLPYQ----PFEFGLLDLSN--------NALSGSIIH 44
           L  N + G IPY        +H  L Y     P    L +L N        N LSG I  
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 45  LICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104
            I +      +ISL LS N  SG+IP+  +   +L++L+L  N FTG +P+++ +L  L+
Sbjct: 279 SIFSLQK---LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Query: 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNG 164
            L L +N+ +G  P +L   ++L  LD+  N+  G IP  +      L  L L SN   G
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEG 394

Query: 165 SLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN----SSNQKNAIYYFVTRGN 220
            +P  L     LR + +  N+ SG +P     FT +  +     S+N          +G 
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPS---EFTKLPLVYFLDISNNN--------LQGR 443

Query: 221 IVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVG 280
           I      + +  +L              +++N F G +P      + L+ L+LS N F G
Sbjct: 444 INSRKWDMPSLQML-------------SLARNKFFGGLP-DSFGSKRLENLDLSRNQFSG 489

Query: 281 KIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSF 339
            +P  +G++  +  L  S N+L G IP  +SS   L  L+LS N LSGQIP+S +++   
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 340 GASCFSGNDLCG 351
                S N L G
Sbjct: 550 SQLDLSQNQLSG 561

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (319), Expect = 3e-31
 Identities = 99/309 (32%), Positives = 143/309 (46%), Gaps = 51/309 (16%)

Query: 45  LICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLS-SL 103
           + CN  N S ++S+ LS    SG I       P++Q +NL +N  +G +P  I T S SL
Sbjct: 63  ITCN--NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL 120

Query: 104 RSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN 163
           R L+L NN   G   +   +  +L +LD+  N   G IP  +G  F  L +L+L  N   
Sbjct: 121 RYLNLSNNNFTG--SIPRGSIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLV 177

Query: 164 GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVF 223
           G +P  L +LT L  L +A N L G IPR                               
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPR------------------------------- 206

Query: 224 EDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIP 283
                       E   + +L + I +  NN SGEIP ++  L  L  L+L +N   G IP
Sbjct: 207 ------------ELGQMKSL-KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253

Query: 284 ENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS-STQLQSFGAS 342
            ++GN+++++ L    N+L G IP S+ SL  L  L+LS+N LSG+IP    QLQ+    
Sbjct: 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313

Query: 343 CFSGNDLCG 351
               N+  G
Sbjct: 314 HLFSNNFTG 322

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (318), Expect = 4e-31
 Identities = 122/419 (29%), Positives = 171/419 (40%), Gaps = 107/419 (25%)

Query: 2   LNLSNNQIYGVIP----YFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICN--------- 48
           L+LSNN + G IP     F             +LDL  N L G I + + N         
Sbjct: 145 LDLSNNMLSGEIPNDIGSF---------SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195

Query: 49  GDNKSV---------IISLK---LSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPIS 96
             N+ V         + SLK   L  N  SG+IP        L  L+L  N  TG +P S
Sbjct: 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255

Query: 97  IGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILN 156
           +G L +L+ L L  N+L+G  P S+ +   LISLD+ +N   G IP  V +    L IL+
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILH 314

Query: 157 LRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCI---NNFTAMATINSSNQKNAIY 213
           L SN F G +PV L  L  L++L +  N  SG IP+ +   NN T +             
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL------------- 361

Query: 214 YFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNL 273
                                             D+S NN +GEIP  L +   L  L L
Sbjct: 362 ----------------------------------DLSTNNLTGEIPEGLCSSGNLFKLIL 387

Query: 274 SHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS- 332
             N   G+IP+++G  RS+  +    N   G +P   + L  +  L++S N+L G+I S 
Sbjct: 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447

Query: 333 -----STQLQSFGASCFSGNDLCGAPLPDCT----------EKNTFAPEVPNGNGNEDE 376
                S Q+ S   + F G       LPD             +N F+  VP   G+  E
Sbjct: 448 KWDMPSLQMLSLARNKFFGG------LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE 500

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  125 bits (316), Expect = 6e-31
 Identities = 107/361 (29%), Positives = 160/361 (44%), Gaps = 59/361 (16%)

Query: 2   LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
           L+L +N   G IP      L   P    +L L +N  SG I   +   +N +V   L LS
Sbjct: 313 LHLFSNNFTGKIP----VALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTV---LDLS 364

Query: 62  KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSL 121
            N  +G+IP+   +  +L  L L  N   G +P S+G   SLR + L++N  +G  P   
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424

Query: 122 KNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDV 181
                +  LDI  N+  G I +   +  P L +L+L  NKF G LP        L  LD+
Sbjct: 425 TKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLP-DSFGSKRLENLDL 482

Query: 182 AHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSIL 241
           + N  SG +PR + + + +  +  S  K                   ++  +  E +S  
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENK-------------------LSGEIPDELSSCK 523

Query: 242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNR 301
            LV S+D+S N  SG+IP   + +  L  L+LS N   G+IP+N+GN+ S          
Sbjct: 524 KLV-SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES---------- 572

Query: 302 LFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN-DLCG----APLPD 356
                         L  +N+S N L G +PS+    +  AS  +GN DLCG    + LP 
Sbjct: 573 --------------LVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPP 618

Query: 357 C 357
           C
Sbjct: 619 C 619

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 81.8 bits (202), Expect = 1e-16
 Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRL 302
            +  + +      G IP  ++ L  LQ++NLS N   G IP ++G++ S+E LD S N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 303 FGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGND---LCGAP-LPDC 357
            G IP+S+  L+ L  LNL+ N LSG++P++   +    + F+  D   LCG P L  C
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.9 bits (179), Expect = 9e-14
 Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 47  CNGDNKS---VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL 103
           C  D+      I  L L      G IP+      HLQ +NL  N   GN+P S+G+++SL
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468

Query: 104 RSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN 160
             L L  N   G  P SL   +SL  L++  N   G +P  +G R       N   N
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 7e-12
 Identities = 29/80 (36%), Positives = 50/80 (62%)

Query: 231 KGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMR 290
           +G +    S L  ++SI++S N+  G IP  L ++  L+ L+LS+N F G IPE++G + 
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 291 SIESLDFSTNRLFGRIPQSM 310
           S+  L+ + N L GR+P ++
Sbjct: 491 SLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 34/126 (26%)

Query: 82  LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSI 141
           L LD+    G +P  I  L  L+S++L  N + G  P SL + +SL  LD          
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD---------- 472

Query: 142 PTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIP---------R 192
                          L  N FNGS+P  L  LT LRIL++  N+LSG +P         R
Sbjct: 473 ---------------LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517

Query: 193 CINNFT 198
              NFT
Sbjct: 518 ASFNFT 523

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 75/278 (26%), Positives = 122/278 (43%), Gaps = 30/278 (10%)

Query: 92  NLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPR 151
           +   ++  L  L SL L  NRL       L   ++L SLD+  N+    IP  +G     
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSN 141

Query: 152 LLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA 211
           L  L+L  NK   SLP  L +L  L+ LD++ N+LS  +P+ ++N + +  ++ S  K  
Sbjct: 142 LKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK-- 197

Query: 212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTL 271
                        D     + L        + +  +D+S N+   E+   L+NL+ L  L
Sbjct: 198 -----------ISDLPPEIELL--------SALEELDLSNNSII-ELLSSLSNLKNLSGL 237

Query: 272 NLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIP 331
            LS+N     +PE+IGN+ ++E+LD S N++      S+ SL+ L  L+LS N LS  +P
Sbjct: 238 ELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALP 294

Query: 332 SSTQLQSFGASCFSGNDLCGAPLPDCTEKNTFAPEVPN 369
               L        +   L    L            + +
Sbjct: 295 LIALLLLLLELLLN-LLLTLKALELKLNSILLNNNILS 331

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 32/118 (27%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           +L LS N++ G IP                 +LS+           C       ++SL L
Sbjct: 503 QLKLSENKLSGEIPD----------------ELSS-----------CKK-----LVSLDL 530

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP 118
           S N  SG IP  +   P L  L+L  N  +G +P ++G + SL  +++ +N L G  P
Sbjct: 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 36/131 (27%)

Query: 2   LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
           +NLS N I G IP                         GSI          + +  L LS
Sbjct: 447 INLSGNSIRGNIP----------------------PSLGSI----------TSLEVLDLS 474

Query: 62  KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR-SLHLRNNR-LAGIFPV 119
            N F+G IP+       L++LNL+ N  +G +P ++G     R S +  +N  L GI   
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI--P 532

Query: 120 SLKNCSSLISL 130
            L+ C   +S+
Sbjct: 533 GLRACGPHLSV 543

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 78  HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDF 137
           +L+ L+L +N  T     +   L +L+ L L  N L  I P +     SL SLD+  N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 16/122 (13%)

Query: 31  LDLSNNALSGSIIHLICNG--DNKSVIISLKLSKNYF----SGDIPDCWMNWPHLQVLNL 84
           L+L+NN +  + I  +  G   N ++ + L L+ N      +  + +   +   L+VLNL
Sbjct: 170 LNLANNGIGDAGIRALAEGLKANCNLEV-LDLNNNGLTDEGASALAETLASLKSLEVLNL 228

Query: 85  DDNYFTGN-----LPISIGTLSSLRSLHLRNNRL----AGIFPVSLKNCSSLISLDIGEN 135
            DN  T           +    SL +L L  N +    A      L    SL+ LD+  N
Sbjct: 229 GDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288

Query: 136 DF 137
            F
Sbjct: 289 KF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 148 RFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN 204
           +   L  +NL  N   G++P  L  +T L +LD+++N+ +G+IP  +   T++  +N
Sbjct: 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 44/133 (33%)

Query: 155 LNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYY 214
           L L +    G +P  +  L  L+ ++++ N++ G IP  + + T++              
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL-------------- 468

Query: 215 FVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLS 274
                                           +D+S N+F+G IP  L  L  L+ LNL+
Sbjct: 469 ------------------------------EVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 275 HNFFVGKIPENIG 287
            N   G++P  +G
Sbjct: 499 GNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 57  SLKLSKNYFSGDIPDCW-MNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRL 113
           SL LS N  +  IPD      P+L+VL+L  N  T   P +   L SLRSL L  N L
Sbjct: 4   SLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRL 302
           ++S+D+S N  +         L  L+ L+LS N      PE    + S+ SLD S N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	433
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.98
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.82
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
PLN03150	623	hypothetical protein; Provisional	99.56
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
PLN03150	623	hypothetical protein; Provisional	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.75
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.47
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.44
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.01
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.91
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.85
PRK15386	426	type III secretion protein GogB; Provisional	97.82
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.72
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.66
PRK15386	426	type III secretion protein GogB; Provisional	97.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.57
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.57
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.0
KOG4341	483	consensus F-box protein containing LRR [General fu	96.95
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.83
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.47
KOG4341	483	consensus F-box protein containing LRR [General fu	96.43
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.37
KOG4308	478	consensus LRR-containing protein [Function unknown	96.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.13
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.52
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.98
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.18
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.84
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.31
smart00370	26	LRR Leucine-rich repeats, outliers.	89.31
smart00370	26	LRR Leucine-rich repeats, outliers.	88.95
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.95
KOG4308	478	consensus LRR-containing protein [Function unknown	88.48
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	87.42
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.09
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.66
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	86.5
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.34
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	83.11
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	81.05

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9e-39  Score=341.81  Aligned_cols=343  Identities=31%  Similarity=0.476  Sum_probs=201.0

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +||+++|.+++.+|.... .    +++|++|++++|.+.+.+|..+   .++++|++|++++|.+.+.+|..+.++++|+
T Consensus       240 ~L~L~~n~l~~~~p~~l~-~----l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  311 (968)
T PLN00113        240 HLDLVYNNLTGPIPSSLG-N----LKNLQYLFLYQNKLSGPIPPSI---FSLQKLISLDLSDNSLSGEIPELVIQLQNLE  311 (968)
T ss_pred             EEECcCceeccccChhHh-C----CCCCCEEECcCCeeeccCchhH---hhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence            478888888887774221 1    4467777777776666666555   3366666666666666666666666666666


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN  160 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  160 (433)
                      +|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.++. .+++|+.|++++|
T Consensus       312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~l~~n  390 (968)
T PLN00113        312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSN  390 (968)
T ss_pred             EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEECcCC
Confidence            666666666666666666666666666666666666666666666666666666666555555544 3445555555555


Q ss_pred             cccccCCccccCCCCcCEEEccCCcCcccCCCCccc------------------------ccccccccccccccc--ccc
Q 042476          161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINN------------------------FTAMATINSSNQKNA--IYY  214 (433)
Q Consensus       161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~------------------------l~~L~~L~l~~~~~~--~~~  214 (433)
                      .+.+.+|..+..+++|+.|++++|.+++..|..+..                        +++|+.|+++.|...  .+.
T Consensus       391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~  470 (968)
T PLN00113        391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD  470 (968)
T ss_pred             EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence            554444444444455555555555444444444444                        444444444444311  011


Q ss_pred             cccCCceeeeccee-eeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCC
Q 042476          215 FVTRGNIVFEDASV-VTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIE  293 (433)
Q Consensus       215 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  293 (433)
                      ..........++.. ...+..+..+..++.|+.|++++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|+
T Consensus       471 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  550 (968)
T PLN00113        471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS  550 (968)
T ss_pred             ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence            00000000000000 01122333444556666677777766666666666666777777777777666666666677777


Q ss_pred             EEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC-cCCCC
Q 042476          294 SLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN-DLCGA  352 (433)
Q Consensus       294 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n-~l~~~  352 (433)
                      .|++++|++++.+|..+..+++|+.+++++|++++.+|....+..+....+.+| .+||.
T Consensus       551 ~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  610 (968)
T PLN00113        551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG  610 (968)
T ss_pred             EEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence            777777777666666666666777777777777776666666666666666666 45553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.3e-37  Score=330.99  Aligned_cols=342  Identities=32%  Similarity=0.478  Sum_probs=288.2

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +|+|++|.+++.+|... +.    +++|++|++++|.+++.+|..+   .++++|+.|++++|.+.+..|..+.++++|+
T Consensus       216 ~L~L~~n~l~~~~p~~l-~~----l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  287 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEI-GG----LTSLNHLDLVYNNLTGPIPSSL---GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI  287 (968)
T ss_pred             EEECcCCccCCcCChhH-hc----CCCCCEEECcCceeccccChhH---hCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence            48999999999888432 22    6789999999999999998888   5699999999999999999999999999999


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN  160 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  160 (433)
                      +|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|
T Consensus       288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n  366 (968)
T PLN00113        288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTN  366 (968)
T ss_pred             EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCC
Confidence            999999999999999999999999999999999999999999999999999999999888988877 7999999999999


Q ss_pred             cccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc--ccccccC-Cceeeecce----------
Q 042476          161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA--IYYFVTR-GNIVFEDAS----------  227 (433)
Q Consensus       161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~--~~~~~~~-~~~~~~~~~----------  227 (433)
                      .+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+++.+...  .+..+.. .......+.          
T Consensus       367 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  446 (968)
T PLN00113        367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS  446 (968)
T ss_pred             eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh
Confidence            999999999999999999999999999999999999999999988877532  1111000 000000000          


Q ss_pred             ---------e-----e-eccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCC
Q 042476          228 ---------V-----V-TKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI  292 (433)
Q Consensus       228 ---------~-----~-~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  292 (433)
                               .     . ..+..+... ..++|+.|++++|.+++..|..+..+++|+.|+|++|++.+.+|..+..+++|
T Consensus       447 ~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  525 (968)
T PLN00113        447 RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL  525 (968)
T ss_pred             hhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence                     0     0 001111111 23578889999999988888888999999999999999999999999999999


Q ss_pred             CEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-cccCccCcccccCCcCCCC
Q 042476          293 ESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDLCGA  352 (433)
Q Consensus       293 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l~~~  352 (433)
                      +.|++++|.+++.+|..+..+++|+.|++++|++++.+|.. ..++.++.+++++|.+.+.
T Consensus       526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~  586 (968)
T PLN00113        526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS  586 (968)
T ss_pred             CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence            99999999999999999999999999999999999988865 5567788899999987763

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.98  E-value=9e-34  Score=263.22  Aligned_cols=348  Identities=21%  Similarity=0.223  Sum_probs=186.0

Q ss_pred             CEEeecccCcccCCCCCC---------------CCCCCC---CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCC
Q 042476            1 ELNLSNNQIYGVIPYFDH---------------RPLPYQ---PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSK   62 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~---------------~~~p~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~   62 (433)
                      .||+|+|.++.+-++++.               ..||..   ..+++.|+|..|.++..-...+   ..++.|+.|||+.
T Consensus        82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L---~~l~alrslDLSr  158 (873)
T KOG4194|consen   82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL---SALPALRSLDLSR  158 (873)
T ss_pred             eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHH---HhHhhhhhhhhhh
Confidence            388899988876553211               334433   3445555555555554433333   2355566666666


Q ss_pred             CcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCC
Q 042476           63 NYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIP  142 (433)
Q Consensus        63 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  142 (433)
                      |.|+.+....|..-.++++|+|++|.|+..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|.+ ..+.
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i-rive  237 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI-RIVE  237 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce-eeeh
Confidence            655544444555545566666666666555555555566666666666666655555555566666666666555 2222


Q ss_pred             hhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccccc----ccC
Q 042476          143 TWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYF----VTR  218 (433)
Q Consensus       143 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~----~~~  218 (433)
                      .-.|.++++|+.|.+.+|.+...-..+|..+.++++|+|+.|+++..-..++-+++.|+.|+++.+...-...    +..
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq  317 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ  317 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence            2233345555555555555543334455556666666666666655555555666666666666553111000    000


Q ss_pred             CceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCc---ccCCCCCCCEE
Q 042476          219 GNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPE---NIGNMRSIESL  295 (433)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L  295 (433)
                      .-.........+.....+.+..+..|++|.|++|.++..-...|..+++|++|||++|.+++.+.+   .|..+++|+.|
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            000000001112233333444455566666666666555555566666666666666666544432   35556677777


Q ss_pred             eCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC-cCCCC
Q 042476          296 DFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN-DLCGA  352 (433)
Q Consensus       296 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n-~l~~~  352 (433)
                      ++.+|++.......|..++.|+.|||.+|.+...-|....-..++.+.+..- -||.+
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC  455 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEec
Confidence            7777776554555666777777777777776655554433335555544332 45554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=2.4e-33  Score=260.40  Aligned_cols=280  Identities=18%  Similarity=0.231  Sum_probs=211.2

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      ++++|+|++|+++....+.|   ..+.+|..|.|+.|+++...+..|+++++|+.|+|..|.|...---.|.++++|+.|
T Consensus       174 ni~~L~La~N~It~l~~~~F---~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl  250 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHF---DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL  250 (873)
T ss_pred             CceEEeeccccccccccccc---cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence            56777777777766666665   346677777777777776666666677777777777777663334456677777777


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL  186 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  186 (433)
                      .+..|.+...-..+|..+.++++|+|..|++...-..|++ +++.|+.|+++.|.+....++++...++|+.|+|++|++
T Consensus       251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI  329 (873)
T ss_pred             hhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence            7777777666666677778888888888887655566666 788888888888888877778888888888888888888


Q ss_pred             cccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCC---cccc
Q 042476          187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIP---MQLT  263 (433)
Q Consensus       187 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~---~~~~  263 (433)
                      +..-+..|..+..|++|+++.+..                    ...-...+..+.+|++|||++|.+...+.   ..|.
T Consensus       330 ~~l~~~sf~~L~~Le~LnLs~Nsi--------------------~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~  389 (873)
T KOG4194|consen  330 TRLDEGSFRVLSQLEELNLSHNSI--------------------DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN  389 (873)
T ss_pred             ccCChhHHHHHHHhhhhcccccch--------------------HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence            766667777888888888777651                    11222345568889999999999875543   4578


Q ss_pred             CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCC
Q 042476          264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIP  331 (433)
Q Consensus       264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p  331 (433)
                      ++++|++|+|.+|++..+...+|.++++|+.|||.+|.+...-|..|..+ +|+.|-+..-.+-|.+.
T Consensus       390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             cchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence            89999999999999986777889999999999999999999999999988 89999887666655433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=2e-30  Score=242.90  Aligned_cols=316  Identities=23%  Similarity=0.348  Sum_probs=171.4

Q ss_pred             EEeecccCcc-cCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            2 LNLSNNQIYG-VIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         2 L~ls~n~l~~-~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      .|+|+|.|+| .+|+-..     +|+++++|.|....+. .+|..+   +.+.+|++|.+++|++. .+...++.++.|+
T Consensus        12 vDfsgNDFsg~~FP~~v~-----qMt~~~WLkLnrt~L~-~vPeEL---~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen   12 VDFSGNDFSGDRFPHDVE-----QMTQMTWLKLNRTKLE-QVPEEL---SRLQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             ccccCCcCCCCcCchhHH-----HhhheeEEEechhhhh-hChHHH---HHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            4889999994 5663211     1445555555555443 233333   23445555555555444 2333344444444


Q ss_pred             EEEccCCcCcc-cCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeC
Q 042476           81 VLNLDDNYFTG-NLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS  159 (433)
Q Consensus        81 ~L~L~~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  159 (433)
                      .+++++|++.. .+|..+..+..|..|+|++|.+. ..|..+..-.++-+|+|++|.+ ..+|..++-++..|-.|+|++
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhcccc
Confidence            44444444431 13444444444444444444444 3444444444444444444444 344444444444444444444


Q ss_pred             ccccccCCccccCCCCcCEEEccCCcCc-------------------------ccCCCCccccccccccccccccccccc
Q 042476          160 NKFNGSLPVQLCHLTFLRILDVAHNNLS-------------------------GTIPRCINNFTAMATINSSNQKNAIYY  214 (433)
Q Consensus       160 n~l~~~~~~~l~~l~~L~~L~l~~n~~~-------------------------~~~p~~~~~l~~L~~L~l~~~~~~~~~  214 (433)
                      |++. .+|...+.+..|++|+|++|.+.                         ..+|..+..+.+|..++++.+.     
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-----  233 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-----  233 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-----
Confidence            4444 33444444444444444444432                         2344455555555555544433     


Q ss_pred             cccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCE
Q 042476          215 FVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIES  294 (433)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  294 (433)
                                      -...++-...+++|+.|+|++|.++ ++....+...+|++|+||.|+++ .+|.++..+++|+.
T Consensus       234 ----------------Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k  295 (1255)
T KOG0444|consen  234 ----------------LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK  295 (1255)
T ss_pred             ----------------CCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence                            1222333444666777777777776 33344455667777777777776 67777777777777


Q ss_pred             EeCcCCcCCC-CCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCC
Q 042476          295 LDFSTNRLFG-RIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAP  353 (433)
Q Consensus       295 L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~  353 (433)
                      |.+.+|+++. .+|..++.+..|+.+..++|.+.-.+...+....++.+.++.|.|-..|
T Consensus       296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLP  355 (1255)
T KOG0444|consen  296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLP  355 (1255)
T ss_pred             HHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeech
Confidence            7777777654 4777777777777777777777644444455666777777777665444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=4.9e-30  Score=240.34  Aligned_cols=317  Identities=23%  Similarity=0.296  Sum_probs=239.6

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCccccc-CCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGS-IIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHL   79 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L   79 (433)
                      +|.+++|++.....+.     .. +++|+.+++..|++... +|..++.   +..|+.|||++|++. ..|..+.+.+++
T Consensus        59 HLs~~HN~L~~vhGEL-----s~-Lp~LRsv~~R~N~LKnsGiP~diF~---l~dLt~lDLShNqL~-EvP~~LE~AKn~  128 (1255)
T KOG0444|consen   59 HLSMAHNQLISVHGEL-----SD-LPRLRSVIVRDNNLKNSGIPTDIFR---LKDLTILDLSHNQLR-EVPTNLEYAKNS  128 (1255)
T ss_pred             hhhhhhhhhHhhhhhh-----cc-chhhHHHhhhccccccCCCCchhcc---cccceeeecchhhhh-hcchhhhhhcCc
Confidence            4566777777554333     21 55788888888888743 6666643   888899999999988 678888888888


Q ss_pred             CEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeC
Q 042476           80 QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS  159 (433)
Q Consensus        80 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  159 (433)
                      -+|+|++|+|..+....|-++..|-.|+|++|++. .+|..++.+.+|++|+|++|++...--..+. .+++|+.|.+++
T Consensus       129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~  206 (1255)
T KOG0444|consen  129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSN  206 (1255)
T ss_pred             EEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhccc
Confidence            89999999988433345678888899999999987 6777888899999999999887321111111 567788888887


Q ss_pred             cccc-ccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehh
Q 042476          160 NKFN-GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYN  238 (433)
Q Consensus       160 n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (433)
                      .+-+ ..+|.++..+.+|+.+|++.|++. .+|..+-.+.+|+.|+++.+...                     .+....
T Consensus       207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it---------------------eL~~~~  264 (1255)
T KOG0444|consen  207 TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT---------------------ELNMTE  264 (1255)
T ss_pred             ccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee---------------------eeeccH
Confidence            6544 457888999999999999999997 88999999999999999887511                     111122


Q ss_pred             hhccceeEEEcccCcccccCCccccCCccCceEeCcCccccc-CCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCC
Q 042476          239 SILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVG-KIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLN  317 (433)
Q Consensus       239 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  317 (433)
                      ..+.+|++|+++.|+++ .+|..+.++++|+.|.+.+|+++- -+|.-++.+.+|+.+..++|.+ ..+|+.++.|..|+
T Consensus       265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~  342 (1255)
T KOG0444|consen  265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQ  342 (1255)
T ss_pred             HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHH
Confidence            34667888899999888 778888888889988888888742 3677788888888888888887 47888888888888


Q ss_pred             eeeCcCCcCcccCCCCcccCccCcccccCC-cCCCCC
Q 042476          318 HLNLSENDLSGQIPSSTQLQSFGASCFSGN-DLCGAP  353 (433)
Q Consensus       318 ~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~  353 (433)
                      .|.|+.|++-..+....-++.++.+|+..| .|-.+|
T Consensus       343 kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  343 KLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             HhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence            888888888754444456677888888777 554443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.93  E-value=5.6e-29  Score=221.96  Aligned_cols=329  Identities=26%  Similarity=0.383  Sum_probs=199.8

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCE
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV   81 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (433)
                      ||.++|.+....+++..      +..++.|+..+|+++. .|+.+   ..+.++..+++.+|.++...|+ .-+|+.|+.
T Consensus       119 l~~s~n~~~el~~~i~~------~~~l~dl~~~~N~i~s-lp~~~---~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~  187 (565)
T KOG0472|consen  119 LDCSSNELKELPDSIGR------LLDLEDLDATNNQISS-LPEDM---VNLSKLSKLDLEGNKLKALPEN-HIAMKRLKH  187 (565)
T ss_pred             hhccccceeecCchHHH------Hhhhhhhhcccccccc-CchHH---HHHHHHHHhhccccchhhCCHH-HHHHHHHHh
Confidence            45555555543333322      4456666666676654 33333   3466777777777777744333 334777888


Q ss_pred             EEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc
Q 042476           82 LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK  161 (433)
Q Consensus        82 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  161 (433)
                      ||...|-+. .+|+.++.+.+|..|++..|++. .+| .|..+..|.++.++.|.+ ..+|....++++++..||++.|+
T Consensus       188 ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNk  263 (565)
T KOG0472|consen  188 LDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNK  263 (565)
T ss_pred             cccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccccc
Confidence            888777776 67888888888888888888887 455 677888888888888877 67788887778888888888888


Q ss_pred             ccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccc-----------------cc----------
Q 042476          162 FNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI-----------------YY----------  214 (433)
Q Consensus       162 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~-----------------~~----------  214 (433)
                      ++ +.|+.++-+.+|+.||+++|.++ .+|..++++ .|+.|.+-++....                 ..          
T Consensus       264 lk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s  340 (565)
T KOG0472|consen  264 LK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS  340 (565)
T ss_pred             cc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence            87 67888888888888888888887 677777777 66666555543110                 00          


Q ss_pred             ------cccCCceeeeccee------------------------------------------------------------
Q 042476          215 ------FVTRGNIVFEDASV------------------------------------------------------------  228 (433)
Q Consensus       215 ------~~~~~~~~~~~~~~------------------------------------------------------------  228 (433)
                            ........+.+...                                                            
T Consensus       341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls  420 (565)
T KOG0472|consen  341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS  420 (565)
T ss_pred             cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence                  00000000000000                                                            


Q ss_pred             -eeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCC
Q 042476          229 -VTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIP  307 (433)
Q Consensus       229 -~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  307 (433)
                       ......+...+.+++|+.|++++|-+. .+|..++.+..|+.|+++.|.+. .+|+.+-.+..++.+-.++|++....|
T Consensus       421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~  498 (565)
T KOG0472|consen  421 NNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDP  498 (565)
T ss_pred             cCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccCh
Confidence             001111222233444444444444443 34444444444444444444443 344433333344444444455544445


Q ss_pred             ccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCC
Q 042476          308 QSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLC  350 (433)
Q Consensus       308 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~  350 (433)
                      +.+.++.+|+.||+.+|.+...+|..+.++++..+++.||++.
T Consensus       499 ~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  499 SGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            5577778888888888888877777788888888888888664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.87  E-value=3e-25  Score=198.32  Aligned_cols=262  Identities=27%  Similarity=0.361  Sum_probs=135.2

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476           28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH  107 (433)
Q Consensus        28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~  107 (433)
                      ++.|+++.|.+...-+ .+   .++..+.+|.+++|++. ..|.+++.+..++.++.++|++. .+|..+..+.+|+.++
T Consensus        47 l~~lils~N~l~~l~~-dl---~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLRE-DL---KNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             hhhhhhccCchhhccH-hh---hcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            4455555555443222 11   33455555555555554 34444455555555555555555 4555555555555555


Q ss_pred             ccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476          108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                      ++.|.+. .+|+.++.+..|..++...|.+ ..+|..++ .+.++..+++.+|++... |...-.++.|++||+..|.+.
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i-~slp~~~~-~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~  196 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQI-SSLPEDMV-NLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLE  196 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhcccccc-ccCchHHH-HHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhh
Confidence            5555554 3444445555555555555555 34555554 455555555555555522 222222555555555555444


Q ss_pred             ccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCcc
Q 042476          188 GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEG  267 (433)
Q Consensus       188 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~  267 (433)
                       .+|..++.+.+                                            |..|++..|.+. .+| .|.+|..
T Consensus       197 -tlP~~lg~l~~--------------------------------------------L~~LyL~~Nki~-~lP-ef~gcs~  229 (565)
T KOG0472|consen  197 -TLPPELGGLES--------------------------------------------LELLYLRRNKIR-FLP-EFPGCSL  229 (565)
T ss_pred             -cCChhhcchhh--------------------------------------------hHHHHhhhcccc-cCC-CCCccHH
Confidence             45555555444                                            445555555554 334 4555666


Q ss_pred             CceEeCcCcccccCCCcccC-CCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccC
Q 042476          268 LQTLNLSHNFFVGKIPENIG-NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSG  346 (433)
Q Consensus       268 L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~  346 (433)
                      |++|.++.|++. .+|.+.. +++++..||+.+|++. ..|+.++-+.+|++||+++|.+++..+..+.+ .+..+.+.|
T Consensus       230 L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leG  306 (565)
T KOG0472|consen  230 LKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEG  306 (565)
T ss_pred             HHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcC
Confidence            666666666554 3443332 5556666666666663 55555555556666666666666555555555 555555555


Q ss_pred             CcC
Q 042476          347 NDL  349 (433)
Q Consensus       347 n~l  349 (433)
                      |++
T Consensus       307 NPl  309 (565)
T KOG0472|consen  307 NPL  309 (565)
T ss_pred             Cch
Confidence            544

>PLN03210 Resistant to P

Probab=99.87  E-value=1e-20  Score=203.77  Aligned_cols=292  Identities=18%  Similarity=0.250  Sum_probs=150.3

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      +|+.|++.++.+. ..|..+    ...+|+.|++.+|.+. .++..+..+++|+.|+|+++.....+| .+..+++|++|
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f----~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L  662 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF----RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETL  662 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC----CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEE
Confidence            4555555555443 233332    1456666666666665 345555666666666666654433444 35566666666


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL  186 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  186 (433)
                      ++++|.....+|..+..+++|+.|++++|.....+|..+  ++++|+.|++++|.....+|..   .++|+.|++++|.+
T Consensus       663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i  737 (1153)
T PLN03210        663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI  737 (1153)
T ss_pred             EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence            666665445566666666666666666655445565544  4666666666666544344432   34566666666666


Q ss_pred             cccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCc
Q 042476          187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE  266 (433)
Q Consensus       187 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~  266 (433)
                      . .+|..+ .+++|..|.+..+......         .    ............+++|+.|++++|...+.+|..+++++
T Consensus       738 ~-~lP~~~-~l~~L~~L~l~~~~~~~l~---------~----~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~  802 (1153)
T PLN03210        738 E-EFPSNL-RLENLDELILCEMKSEKLW---------E----RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH  802 (1153)
T ss_pred             c-cccccc-cccccccccccccchhhcc---------c----cccccchhhhhccccchheeCCCCCCccccChhhhCCC
Confidence            4 455433 3455555554432110000         0    00000000111233455555555554445555555555


Q ss_pred             cCceEeCcCcccccCCCcccCCCC---------------------CCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCC-
Q 042476          267 GLQTLNLSHNFFVGKIPENIGNMR---------------------SIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEN-  324 (433)
Q Consensus       267 ~L~~L~Ls~n~l~~~~~~~l~~l~---------------------~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-  324 (433)
                      +|+.|++++|...+.+|..+ +++                     +|+.|++++|.++ .+|.++..+++|+.|++++| 
T Consensus       803 ~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        803 KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence            55555555543322344332 334                     4555555555553 45555666666666666663 


Q ss_pred             cCcccCCCCcccCccCcccccCC
Q 042476          325 DLSGQIPSSTQLQSFGASCFSGN  347 (433)
Q Consensus       325 ~l~~~~p~~~~~~~l~~~~~~~n  347 (433)
                      ++.+..+....++.++.++++++
T Consensus       881 ~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        881 NLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CcCccCcccccccCCCeeecCCC
Confidence            33433333344555666666555

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.86  E-value=2.3e-20  Score=201.03  Aligned_cols=266  Identities=21%  Similarity=0.238  Sum_probs=200.6

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +.+|+.|+++++.+.. ++..+   ..+++|+.|+++++.....+|. +..+++|++|+|++|.....+|..+.++++|+
T Consensus       610 ~~~L~~L~L~~s~l~~-L~~~~---~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~  684 (1153)
T PLN03210        610 PENLVKLQMQGSKLEK-LWDGV---HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLE  684 (1153)
T ss_pred             ccCCcEEECcCccccc-ccccc---ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCC
Confidence            6789999999998764 34333   4588999999988764445664 77888999999998876668888899999999


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccc--------------
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQL--------------  170 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l--------------  170 (433)
                      .|++++|.....+|..+ ++++|+.|++++|.....+|.    ...+|+.|++++|.+. .+|..+              
T Consensus       685 ~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~  758 (1153)
T PLN03210        685 DLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMK  758 (1153)
T ss_pred             EEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccccccccccccccccc
Confidence            99999876555666655 688888888888865555543    2457778888777765 333321              


Q ss_pred             ----------------cCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccce
Q 042476          171 ----------------CHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLL  234 (433)
Q Consensus       171 ----------------~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (433)
                                      ...++|+.|++++|...+.+|..+.++++|+.|++++|....                    ..
T Consensus       759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~--------------------~L  818 (1153)
T PLN03210        759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE--------------------TL  818 (1153)
T ss_pred             hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC--------------------ee
Confidence                            123578888888887777888888899999999888764211                    01


Q ss_pred             eehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCC
Q 042476          235 VEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLS  314 (433)
Q Consensus       235 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  314 (433)
                      +.. ..+++|+.|++++|.....+|..   ..+|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..++
T Consensus       819 P~~-~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~  893 (1153)
T PLN03210        819 PTG-INLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK  893 (1153)
T ss_pred             CCC-CCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence            111 13678999999998766555543   468999999999998 7899999999999999999765567888888999


Q ss_pred             CCCeeeCcCCcC
Q 042476          315 FLNHLNLSENDL  326 (433)
Q Consensus       315 ~L~~L~L~~n~l  326 (433)
                      +|+.+++++|.-
T Consensus       894 ~L~~L~l~~C~~  905 (1153)
T PLN03210        894 HLETVDFSDCGA  905 (1153)
T ss_pred             CCCeeecCCCcc
Confidence            999999999963

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=6.1e-21  Score=191.92  Aligned_cols=259  Identities=25%  Similarity=0.325  Sum_probs=195.2

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      .||++.|.|+ .+|...       .++|+.|++.+|+++. +|.      ..++|++|++++|+++. +|..   .++|+
T Consensus       205 ~LdLs~~~Lt-sLP~~l-------~~~L~~L~L~~N~Lt~-LP~------lp~~Lk~LdLs~N~Lts-LP~l---p~sL~  265 (788)
T PRK15387        205 VLNVGESGLT-TLPDCL-------PAHITTLVIPDNNLTS-LPA------LPPELRTLEVSGNQLTS-LPVL---PPGLL  265 (788)
T ss_pred             EEEcCCCCCC-cCCcch-------hcCCCEEEccCCcCCC-CCC------CCCCCcEEEecCCccCc-ccCc---ccccc
Confidence            3789999998 567421       2379999999999985 442      26899999999999984 5543   46899


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN  160 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  160 (433)
                      .|++++|.+. .+|..+   ++|+.|++++|.++. +|.   ..++|+.|++++|.+. .+|..    ..+|+.|++++|
T Consensus       266 ~L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N  332 (788)
T PRK15387        266 ELSIFSNPLT-HLPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNN  332 (788)
T ss_pred             eeeccCCchh-hhhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCCC----cccccccccccC
Confidence            9999999988 456533   578899999999984 454   3578999999999984 56542    346888999999


Q ss_pred             cccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhh
Q 042476          161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI  240 (433)
Q Consensus       161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (433)
                      .+.. +|..   ..+|+.|++++|+++ .+|...   .+|+.|+++++...                     .++   ..
T Consensus       333 ~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~lp---~~L~~L~Ls~N~L~---------------------~LP---~l  380 (788)
T PRK15387        333 QLTS-LPTL---PSGLQELSVSDNQLA-SLPTLP---SELYKLWAYNNRLT---------------------SLP---AL  380 (788)
T ss_pred             cccc-cccc---ccccceEecCCCccC-CCCCCC---cccceehhhccccc---------------------cCc---cc
Confidence            9984 5532   247999999999998 566543   35566666554311                     011   11


Q ss_pred             ccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeee
Q 042476          241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLN  320 (433)
Q Consensus       241 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  320 (433)
                      +.+|+.|++++|.+++ +|..   .++|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|..+..+++|+.|+
T Consensus       381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  451 (788)
T ss_pred             ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence            3468999999999984 5543   368999999999998 46653   357889999999997 6888899999999999


Q ss_pred             CcCCcCcccCCC
Q 042476          321 LSENDLSGQIPS  332 (433)
Q Consensus       321 L~~n~l~~~~p~  332 (433)
                      +++|++++..+.
T Consensus       452 Ls~N~Ls~~~~~  463 (788)
T PRK15387        452 LEGNPLSERTLQ  463 (788)
T ss_pred             CCCCCCCchHHH
Confidence            999999987664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.83  E-value=6.6e-23  Score=183.03  Aligned_cols=289  Identities=18%  Similarity=0.164  Sum_probs=210.2

Q ss_pred             CCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccC-Ccc
Q 042476           35 NNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRN-NRL  113 (433)
Q Consensus        35 ~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~-n~l  113 (433)
                      +..++ .+|..+     -+....++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+-|.+|.++++|.+|-+.+ |+|
T Consensus        55 ~~GL~-eVP~~L-----P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   55 GKGLT-EVPANL-----PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             CCCcc-cCcccC-----CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            33444 366666     45678889999999988889999999999999999999988999999999888887776 889


Q ss_pred             cccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc------
Q 042476          114 AGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS------  187 (433)
Q Consensus       114 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~------  187 (433)
                      +.+....|+++..|+-|.+.-|++ .-++...+..++++..|.+..|.+...-..++..+.+++++.+.-|.+.      
T Consensus       129 ~~l~k~~F~gL~slqrLllNan~i-~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  129 TDLPKGAFGGLSSLQRLLLNANHI-NCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             hhhhhhHhhhHHHHHHHhcChhhh-cchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence            877777899999999999998888 5667777778999999999999888544458888888998888777631      


Q ss_pred             ------ccCCCCcccccccccccccccc-cccccc----ccCCceeeecceeee-ccceeehhhhccceeEEEcccCccc
Q 042476          188 ------GTIPRCINNFTAMATINSSNQK-NAIYYF----VTRGNIVFEDASVVT-KGLLVEYNSILNLVRSIDISKNNFS  255 (433)
Q Consensus       188 ------~~~p~~~~~l~~L~~L~l~~~~-~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~L~~n~~~  255 (433)
                            ...|..++...-..-..+.... +++...    ...+........... ..-...-++.+++|+.|+|++|+++
T Consensus       208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~  287 (498)
T KOG4237|consen  208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT  287 (498)
T ss_pred             hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence                  1112222221111100000000 000000    000000000000000 0011122567899999999999999


Q ss_pred             ccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccC
Q 042476          256 GEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQI  330 (433)
Q Consensus       256 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  330 (433)
                      +.-+.+|.+..++++|.|..|++...-...|.++.+|+.|+|++|+|+..-|..|..+.+|.+|++-.|++-+..
T Consensus       288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            999999999999999999999998666778899999999999999999999999999999999999999987643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=1.2e-19  Score=182.74  Aligned_cols=260  Identities=25%  Similarity=0.319  Sum_probs=196.4

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476           26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS  105 (433)
Q Consensus        26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~  105 (433)
                      ..-..|+++++.++ .+|..+     .++|+.|++.+|+++. +|..   .++|++|++++|+++ .+|..   .++|+.
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l-----~~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~  266 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCL-----PAHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLE  266 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcch-----hcCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc---ccccce
Confidence            34668999999998 567666     4589999999999984 5643   578999999999999 45643   468999


Q ss_pred             EEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCc
Q 042476          106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNN  185 (433)
Q Consensus       106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  185 (433)
                      |++++|.+.. +|..   ..+|+.|++++|.+ ..+|.    ..++|+.|++++|.+.+ +|...   .+|+.|++++|.
T Consensus       267 L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~L-t~LP~----~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~  333 (788)
T PRK15387        267 LSIFSNPLTH-LPAL---PSGLCKLWIFGNQL-TSLPV----LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQ  333 (788)
T ss_pred             eeccCCchhh-hhhc---hhhcCEEECcCCcc-ccccc----cccccceeECCCCcccc-CCCCc---ccccccccccCc
Confidence            9999999884 4442   35788999999998 45664    25789999999999984 44422   367888999999


Q ss_pred             CcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCC
Q 042476          186 LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL  265 (433)
Q Consensus       186 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l  265 (433)
                      ++ .+|..   ..+|+.|++++|....                     ++   ..+.+|+.|++++|.++. +|..   .
T Consensus       334 L~-~LP~l---p~~Lq~LdLS~N~Ls~---------------------LP---~lp~~L~~L~Ls~N~L~~-LP~l---~  381 (788)
T PRK15387        334 LT-SLPTL---PSGLQELSVSDNQLAS---------------------LP---TLPSELYKLWAYNNRLTS-LPAL---P  381 (788)
T ss_pred             cc-ccccc---ccccceEecCCCccCC---------------------CC---CCCcccceehhhcccccc-Cccc---c
Confidence            97 56642   2468888888765110                     11   113568889999999984 5543   3


Q ss_pred             ccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC-CcccCccCcccc
Q 042476          266 EGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS-STQLQSFGASCF  344 (433)
Q Consensus       266 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~~l~~~~~  344 (433)
                      .+|+.|++++|+++ .+|..   .++|+.|++++|++++ +|...   .+|+.|++++|+++. +|. ...++.+..+++
T Consensus       382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLTR-LPESLIHLSSETTVNL  452 (788)
T ss_pred             cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCcccc-cChHHhhccCCCeEEC
Confidence            57999999999998 46653   3689999999999974 66543   468899999999995 554 466788899999


Q ss_pred             cCCcCCCCC
Q 042476          345 SGNDLCGAP  353 (433)
Q Consensus       345 ~~n~l~~~~  353 (433)
                      ++|.+++..
T Consensus       453 s~N~Ls~~~  461 (788)
T PRK15387        453 EGNPLSERT  461 (788)
T ss_pred             CCCCCCchH
Confidence            999998763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=4e-20  Score=187.09  Aligned_cols=246  Identities=25%  Similarity=0.380  Sum_probs=125.8

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476           28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH  107 (433)
Q Consensus        28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~  107 (433)
                      ...|++++++++. +|..+     .+.++.|++++|+++ .+|..+.  .+|++|++++|.++ .+|..+.  ++|+.|+
T Consensus       180 ~~~L~L~~~~Lts-LP~~I-----p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~  247 (754)
T PRK15370        180 KTELRLKILGLTT-IPACI-----PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEME  247 (754)
T ss_pred             ceEEEeCCCCcCc-CCccc-----ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence            3445555554442 33322     234455555555554 2333221  24555555555544 3343322  2455555


Q ss_pred             ccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476          108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                      +++|.+. .+|..+.  .+|+.|++++|.+. .+|..+.   ++|+.|++++|+++. +|..+.  ++|+.|++++|.++
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT  317 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence            5555544 2333322  24555555555542 3443322   345555555555542 232221  24455555555554


Q ss_pred             ccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCcc
Q 042476          188 GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEG  267 (433)
Q Consensus       188 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~  267 (433)
                       .+|..+.  ++|+.|+++.|...                    . ++.  ..++.|+.|++++|.++ .+|..+  .++
T Consensus       318 -~LP~~l~--~sL~~L~Ls~N~Lt--------------------~-LP~--~l~~sL~~L~Ls~N~L~-~LP~~l--p~~  368 (754)
T PRK15370        318 -ALPETLP--PGLKTLEAGENALT--------------------S-LPA--SLPPELQVLDVSKNQIT-VLPETL--PPT  368 (754)
T ss_pred             -cCCcccc--ccceeccccCCccc--------------------c-CCh--hhcCcccEEECCCCCCC-cCChhh--cCC
Confidence             2332221  23444443333200                    0 000  01245888888888887 455544  368


Q ss_pred             CceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccc----cCCCCCCeeeCcCCcCcc
Q 042476          268 LQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSM----SSLSFLNHLNLSENDLSG  328 (433)
Q Consensus       268 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~  328 (433)
                      |+.|+|++|+++ .+|..+.  .+|+.|++++|+++ .+|..+    ..++.+..+++.+|+++.
T Consensus       369 L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        369 ITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             cCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            889999999887 5565553  46888899999886 445433    345778888999988863

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.82  E-value=1.3e-22  Score=181.19  Aligned_cols=279  Identities=22%  Similarity=0.225  Sum_probs=203.8

Q ss_pred             cCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcC-ccccccCChhhh
Q 042476           68 DIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGE-NDFFGSIPTWVG  146 (433)
Q Consensus        68 ~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~  146 (433)
                      .+|..+.  +.-.+++|..|.|+...|.+|+.+++|+.|+|++|.|+.+-|++|..+++|..|-+.+ |++ ..+|...|
T Consensus        60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k~~F  136 (498)
T KOG4237|consen   60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPKGAF  136 (498)
T ss_pred             cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhhhHh
Confidence            4555432  2567899999999988888999999999999999999999999999999998887766 778 68999999


Q ss_pred             hcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc-cccccc------CC
Q 042476          147 ERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA-IYYFVT------RG  219 (433)
Q Consensus       147 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~------~~  219 (433)
                      .++..++-|.+.-|++.....++|..++++..|.+-+|.+.......|..+.+++.+++..+... .+..-+      ..
T Consensus       137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~  216 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN  216 (498)
T ss_pred             hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence            99999999999999999777889999999999999999998333347888889988876655411 000000      00


Q ss_pred             ceeeecceeee------ccce-eehhhhccceeEE---EcccCcccccCCc-cccCCccCceEeCcCcccccCCCcccCC
Q 042476          220 NIVFEDASVVT------KGLL-VEYNSILNLVRSI---DISKNNFSGEIPM-QLTNLEGLQTLNLSHNFFVGKIPENIGN  288 (433)
Q Consensus       220 ~~~~~~~~~~~------~~~~-~~~~~~~~~L~~L---~L~~n~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  288 (433)
                      .+.....+...      .... ...-+....++.+   -.+.+...+..|. .|..+++|++|+|++|+++++-+.+|..
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~  296 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG  296 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence            00000000000      0000 0000001112211   1223333334443 4788999999999999999999999999


Q ss_pred             CCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-cccCccCcccccCCcC
Q 042476          289 MRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDL  349 (433)
Q Consensus       289 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l  349 (433)
                      ...++.|.|..|++...-...|.++..|+.|+|.+|++++.-|.. ..+..+..+.+-+|++
T Consensus       297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            999999999999997777778999999999999999999877755 3344566667777754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.80  E-value=1.5e-21  Score=191.39  Aligned_cols=297  Identities=25%  Similarity=0.333  Sum_probs=135.3

Q ss_pred             EEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccC
Q 042476           31 LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRN  110 (433)
Q Consensus        31 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~  110 (433)
                      ||+.+|.+....   +   ..+++|+.+....|++....    ..-++++.|+.++|.++.. ...+. -.+|+++++++
T Consensus       183 ldLr~N~~~~~d---l---s~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~-~~~p~-p~nl~~~dis~  250 (1081)
T KOG0618|consen  183 LDLRYNEMEVLD---L---SNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTL-DVHPV-PLNLQYLDISH  250 (1081)
T ss_pred             eecccchhhhhh---h---hhccchhhhhhhhcccceEE----ecCcchheeeeccCcceee-ccccc-cccceeeecch
Confidence            677777665111   1   22455555555555443210    1223455555555555521 11111 13455555555


Q ss_pred             CcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccC
Q 042476          111 NRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTI  190 (433)
Q Consensus       111 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  190 (433)
                      |+++ .+|+.+..+.+|+.++...|.+ ..+|..++ ...+|+.|.+.+|.+. -+|....+++.|++|+|..|++. .+
T Consensus       251 n~l~-~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~-~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~l  325 (1081)
T KOG0618|consen  251 NNLS-NLPEWIGACANLEALNANHNRL-VALPLRIS-RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SL  325 (1081)
T ss_pred             hhhh-cchHHHHhcccceEecccchhH-HhhHHHHh-hhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-cc
Confidence            5555 3335555555555555555555 34444444 4455555555555554 34444455555555555555554 33


Q ss_pred             CCCc-cccc-cccccccccccccccccccCCcee-eec---ceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476          191 PRCI-NNFT-AMATINSSNQKNAIYYFVTRGNIV-FED---ASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN  264 (433)
Q Consensus       191 p~~~-~~l~-~L~~L~l~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  264 (433)
                      |+.+ .... .+..++.+.+.............. ...   ............+..+..|+.|+|++|.+.......+.+
T Consensus       326 p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k  405 (1081)
T KOG0618|consen  326 PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK  405 (1081)
T ss_pred             chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc
Confidence            3311 1111 122222222211111000000000 000   000011222223334555666666666665333334555


Q ss_pred             CccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCccc-CCCCcccCccCccc
Q 042476          265 LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQ-IPSSTQLQSFGASC  343 (433)
Q Consensus       265 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~~~l~~~~  343 (433)
                      +..|+.|+||||+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++.. +|.....++|+.+|
T Consensus       406 le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd  482 (1081)
T KOG0618|consen  406 LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD  482 (1081)
T ss_pred             hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence            666666666666665 55555666666666666666654 344 455566666666666666532 22222224566666


Q ss_pred             ccCC
Q 042476          344 FSGN  347 (433)
Q Consensus       344 ~~~n  347 (433)
                      ++||
T Consensus       483 lSGN  486 (1081)
T KOG0618|consen  483 LSGN  486 (1081)
T ss_pred             ccCC
Confidence            6666

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=2.9e-19  Score=180.86  Aligned_cols=246  Identities=24%  Similarity=0.402  Sum_probs=186.0

Q ss_pred             CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476           53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI  132 (433)
Q Consensus        53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  132 (433)
                      .+...|+++++.++ .+|..+.  +.|+.|+|++|+++ .+|..+.  ++|++|++++|.++ .+|..+.  .+|+.|++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            45688999999888 4666553  57999999999999 5776654  58999999999998 4565543  58999999


Q ss_pred             cCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccc
Q 042476          133 GENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI  212 (433)
Q Consensus       133 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~  212 (433)
                      ++|.+ ..+|..+.   .+|+.|++++|++. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|+++.|....
T Consensus       249 s~N~L-~~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        249 SINRI-TELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             cCCcc-CcCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc
Confidence            99998 47887764   58999999999998 5676654  58999999999998 5665443  467777777654110


Q ss_pred             cccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCC
Q 042476          213 YYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI  292 (433)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  292 (433)
                                           .+.  ..+++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|
T Consensus       319 ---------------------LP~--~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L  369 (754)
T PRK15370        319 ---------------------LPE--TLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTI  369 (754)
T ss_pred             ---------------------CCc--cccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCc
Confidence                                 000  113579999999999984 565553  79999999999997 5776553  789


Q ss_pred             CEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-c----ccCccCcccccCCcCC
Q 042476          293 ESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-T----QLQSFGASCFSGNDLC  350 (433)
Q Consensus       293 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~----~~~~l~~~~~~~n~l~  350 (433)
                      +.|++++|.++ .+|..+.  ..|+.|++++|++++ +|.. .    ..+.+..+++.+|++.
T Consensus       370 ~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        370 TTLDVSRNALT-NLPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CEEECCCCcCC-CCCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence            99999999997 4565544  469999999999984 4432 1    2345667788888764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.78  E-value=3.9e-21  Score=188.47  Aligned_cols=269  Identities=25%  Similarity=0.302  Sum_probs=180.9

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476           26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS  105 (433)
Q Consensus        26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~  105 (433)
                      ++++.|+.+.|-++...+..     ...++++++++.|+++ .+|+.+..+.+|+.++..+|++. .+|..+....+|++
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p-----~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~  291 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHP-----VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVS  291 (1081)
T ss_pred             cchheeeeccCcceeecccc-----ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHH
Confidence            45666666666655332222     2456777788777777 35577777778888888887775 67777777777888


Q ss_pred             EEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCC-ccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476          106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPR-LLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN  184 (433)
Q Consensus       106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  184 (433)
                      |.+..|.+. .+|.....+..|++|+|..|.+ ..+|..++..... |+.|+.+.|.+.......=..++.|+.|.+.+|
T Consensus       292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN  369 (1081)
T KOG0618|consen  292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN  369 (1081)
T ss_pred             HHhhhhhhh-hCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence            888777777 4555566677888888888877 5666665543332 555555555554221111123456777777777


Q ss_pred             cCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476          185 NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN  264 (433)
Q Consensus       185 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  264 (433)
                      .+++..-..+.++.+|+.|+++.+..                    ..+.......+..|++|+|+||.++ .+|..+.+
T Consensus       370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL--------------------~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~  428 (1081)
T KOG0618|consen  370 HLTDSCFPVLVNFKHLKVLHLSYNRL--------------------NSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN  428 (1081)
T ss_pred             cccccchhhhccccceeeeeeccccc--------------------ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh
Confidence            77766666677777777777776641                    1222334455677888888888888 66788888


Q ss_pred             CccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcC
Q 042476          265 LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDL  326 (433)
Q Consensus       265 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  326 (433)
                      +..|++|...+|++. ..| ++..++.|+.+|+|.|+++...-......++|++||+++|..
T Consensus       429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            888888888888887 667 677888899999998888754322222227888889988873

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=4e-21  Score=180.23  Aligned_cols=183  Identities=23%  Similarity=0.217  Sum_probs=91.4

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCcCcC------cCCccc
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNYFSG------DIPDCW   73 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~------~~~~~~   73 (433)
                      .|||+.+++++..-    ..+.....+|++|+++++.+++.....++.. ...+.+++++++++.+.+      .++..+
T Consensus         2 ~l~L~~~~l~~~~~----~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l   77 (319)
T cd00116           2 QLSLKGELLKTERA----TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL   77 (319)
T ss_pred             ccccccCcccccch----HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH
Confidence            36777777774311    0010114457788888777754322222211 345667777777766552      123344


Q ss_pred             CCCCCCCEEEccCCcCcccCCcccCCCCC---cCEEEccCCcccc----cCCccccCC-CCCcEEECcCccccccCChh-
Q 042476           74 MNWPHLQVLNLDDNYFTGNLPISIGTLSS---LRSLHLRNNRLAG----IFPVSLKNC-SSLISLDIGENDFFGSIPTW-  144 (433)
Q Consensus        74 ~~l~~L~~L~L~~n~i~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~-  144 (433)
                      ..+++|+.|++++|.+....+..+..+.+   |++|++++|.+..    .+...+..+ ++|+.|++++|.+.+..... 
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            55666666666666665444444333333   6666666666542    122233344 56666666666553211111 


Q ss_pred             --hhhcCCCccEEEeeCcccccc----CCccccCCCCcCEEEccCCcCc
Q 042476          145 --VGERFPRLLILNLRSNKFNGS----LPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       145 --~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                        .+..+++|++|++++|.+.+.    ++..+..+++|+.|++++|.+.
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence              112344566666665555421    1223334445555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=3.1e-19  Score=167.40  Aligned_cols=255  Identities=21%  Similarity=0.236  Sum_probs=161.6

Q ss_pred             EEEccCCccccc-CCccccCCCCCCCccEEEcCCCcCcCc----CCcccCCCCCCCEEEccCCcCcc------cCCcccC
Q 042476           30 LLDLSNNALSGS-IIHLICNGDNKSVIISLKLSKNYFSGD----IPDCWMNWPHLQVLNLDDNYFTG------NLPISIG   98 (433)
Q Consensus        30 ~L~l~~n~l~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~------~~p~~~~   98 (433)
                      .|+|..+.+++. ....+   ..+..|+.|+++++.++..    ++..+...+.+++++++++.+.+      .++..+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~---~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~   78 (319)
T cd00116           2 QLSLKGELLKTERATELL---PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT   78 (319)
T ss_pred             ccccccCcccccchHHHH---HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence            467777777743 22233   2366689999999887532    45556677788999998887762      2345677


Q ss_pred             CCCCcCEEEccCCcccccCCccccCCCC---CcEEECcCcccccc----CChhhhhcC-CCccEEEeeCcccccc----C
Q 042476           99 TLSSLRSLHLRNNRLAGIFPVSLKNCSS---LISLDIGENDFFGS----IPTWVGERF-PRLLILNLRSNKFNGS----L  166 (433)
Q Consensus        99 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~~~~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~  166 (433)
                      .+++|+.|++++|.+....+..+..+..   |++|++++|.+.+.    +...+. .+ ++|+.|++++|.+++.    +
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHH
Confidence            7888999999888887555555555544   88888888877421    222222 44 7888888888887732    3


Q ss_pred             CccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeE
Q 042476          167 PVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRS  246 (433)
Q Consensus       167 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  246 (433)
                      ...+..+++|++|++++|.+++.....+                                        .......++|+.
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l----------------------------------------~~~l~~~~~L~~  197 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRAL----------------------------------------AEGLKANCNLEV  197 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHH----------------------------------------HHHHHhCCCCCE
Confidence            3455667788888888887763111000                                        001111345777


Q ss_pred             EEcccCccccc----CCccccCCccCceEeCcCcccccCCCcccC-----CCCCCCEEeCcCCcCCC----CCCccccCC
Q 042476          247 IDISKNNFSGE----IPMQLTNLEGLQTLNLSHNFFVGKIPENIG-----NMRSIESLDFSTNRLFG----RIPQSMSSL  313 (433)
Q Consensus       247 L~L~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~----~~~~~l~~l  313 (433)
                      |++++|.+++.    ++..+..+++|+.|++++|.+++.....+.     ..+.|+.|++++|.++.    .+...+..+
T Consensus       198 L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~  277 (319)
T cd00116         198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK  277 (319)
T ss_pred             EeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC
Confidence            77777776532    233455667788888888877643222221     23678888888887752    233445556


Q ss_pred             CCCCeeeCcCCcCcc
Q 042476          314 SFLNHLNLSENDLSG  328 (433)
Q Consensus       314 ~~L~~L~L~~n~l~~  328 (433)
                      ++|+.+++++|.++.
T Consensus       278 ~~L~~l~l~~N~l~~  292 (319)
T cd00116         278 ESLLELDLRGNKFGE  292 (319)
T ss_pred             CCccEEECCCCCCcH
Confidence            778888888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1.6e-18  Score=138.17  Aligned_cols=162  Identities=28%  Similarity=0.539  Sum_probs=100.7

Q ss_pred             CCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCE
Q 042476           99 TLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRI  178 (433)
Q Consensus        99 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  178 (433)
                      ++.++..|.+++|+++ .+|..+..+.+|+.|++.+|++ ..+|..+. .+++|++|+++-|++. ..|..|+.++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi-e~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI-EELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh-hhcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence            4556666666777666 4455566666777777777766 46666665 5677777777766665 56777777777777


Q ss_pred             EEccCCcCcc-cCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCccccc
Q 042476          179 LDVAHNNLSG-TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGE  257 (433)
Q Consensus       179 L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~  257 (433)
                      ||+.+|++.+ .+|..|-.+                                            ..|+.|++++|.+. .
T Consensus       107 ldltynnl~e~~lpgnff~m--------------------------------------------~tlralyl~dndfe-~  141 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYM--------------------------------------------TTLRALYLGDNDFE-I  141 (264)
T ss_pred             hhccccccccccCCcchhHH--------------------------------------------HHHHHHHhcCCCcc-c
Confidence            7777776652 234333222                                            22445555566665 5


Q ss_pred             CCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCcccc
Q 042476          258 IPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMS  311 (433)
Q Consensus       258 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~  311 (433)
                      +|..++++++|+.|.+.+|.+. .+|.+++.+..|++|.+.+|+++ .+|..++
T Consensus       142 lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  142 LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence            5666666667777777666665 56666666666777777777665 3443333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1.1e-18  Score=138.96  Aligned_cols=163  Identities=28%  Similarity=0.511  Sum_probs=99.4

Q ss_pred             CCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccE
Q 042476           75 NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLI  154 (433)
Q Consensus        75 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  154 (433)
                      ++.+++.|.|++|+++ .+|..+..+.+|+.|++++|.+. .+|.++..+++|+.|+++.|++ ..+|.+++ .++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfg-s~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFG-SFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccC-CCchhhh
Confidence            4455555566666665 44555555666666666666655 4555566666666666666655 35555555 4666666


Q ss_pred             EEeeCcccc-ccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccc
Q 042476          155 LNLRSNKFN-GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGL  233 (433)
Q Consensus       155 L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (433)
                      |++.+|++. ..+|..|-.++.|+.|+++.|.+. .+|..++++++                                  
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~----------------------------------  151 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN----------------------------------  151 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc----------------------------------
Confidence            666666555 235566666666666677766665 55555554433                                  


Q ss_pred             eeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCC
Q 042476          234 LVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN  288 (433)
Q Consensus       234 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  288 (433)
                                |+.|.+..|.+. .+|..++.+..|++|.+.+|.++ .+|.++++
T Consensus       152 ----------lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  152 ----------LQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             ----------eeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence                      455555566555 56677777778888888888876 55655543

>PLN03150 hypothetical protein; Provisional

Probab=99.56  E-value=8.8e-15  Score=147.74  Aligned_cols=116  Identities=36%  Similarity=0.646  Sum_probs=102.3

Q ss_pred             ceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476          243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS  322 (433)
Q Consensus       243 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  322 (433)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|++.|.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCc--ccCccCcccccCC-cCCCCCC-CCCC
Q 042476          323 ENDLSGQIPSST--QLQSFGASCFSGN-DLCGAPL-PDCT  358 (433)
Q Consensus       323 ~n~l~~~~p~~~--~~~~l~~~~~~~n-~l~~~~~-~~c~  358 (433)
                      +|+++|.+|...  ....+..+++.+| .+|+.|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999752  1234556788888 7887653 2553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.30  E-value=9.2e-14  Score=130.52  Aligned_cols=196  Identities=24%  Similarity=0.400  Sum_probs=146.0

Q ss_pred             CCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccE
Q 042476           75 NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLI  154 (433)
Q Consensus        75 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  154 (433)
                      .+..-...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|+.|+++.|++ ..+|..++  .--|+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC--~lpLkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLC--DLPLKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhh--cCccee
Confidence            3444556788888888 78888888888888899998888 6778888899999999999988 68888886  456888


Q ss_pred             EEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccce
Q 042476          155 LNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLL  234 (433)
Q Consensus       155 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (433)
                      |-+++|+++ .+|..++.+..|..||.+.|.+. .+|..+..+.+|+                                 
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr---------------------------------  192 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLR---------------------------------  192 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHH---------------------------------
Confidence            888888887 67888888888888888888887 6666666655544                                 


Q ss_pred             eehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccC--
Q 042476          235 VEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSS--  312 (433)
Q Consensus       235 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--  312 (433)
                                 .|.+..|+.. .+|..+.. =.|..||++.|++. .+|-.|..|..|++|.|.+|.+. ..|..++.  
T Consensus       193 -----------~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kG  257 (722)
T KOG0532|consen  193 -----------DLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKG  257 (722)
T ss_pred             -----------HHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhcc
Confidence                       3444455554 45556653 46778888888887 78888888888888888888886 44444432  


Q ss_pred             -CCCCCeeeCcCCc
Q 042476          313 -LSFLNHLNLSEND  325 (433)
Q Consensus       313 -l~~L~~L~L~~n~  325 (433)
                       ..=.++|+..-|+
T Consensus       258 kVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  258 KVHIFKYLSTQACQ  271 (722)
T ss_pred             ceeeeeeecchhcc
Confidence             2235666766664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=1.2e-11  Score=119.33  Aligned_cols=199  Identities=33%  Similarity=0.482  Sum_probs=120.6

Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCC-CCcEEECcCccccccCChhhhhcCCCccEEEeeC
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCS-SLISLDIGENDFFGSIPTWVGERFPRLLILNLRS  159 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  159 (433)
                      .+++..+.+.. ....+..++.++.|.+.+|.++ .++....... +|+.|++++|.+ ..+|..+. .+++|+.|+++.
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~-~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLR-NLPNLKNLDLSF  172 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccch-hhhhhhhh-ccccccccccCC
Confidence            46666666542 2233444567777777777776 3444444553 777777777777 45554444 577777777777


Q ss_pred             ccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhh
Q 042476          160 NKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNS  239 (433)
Q Consensus       160 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (433)
                      |++. .++......++|+.|++++|.+. .+|......                                          
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~------------------------------------------  208 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL------------------------------------------  208 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhh------------------------------------------
Confidence            7776 44544446677777777777776 454433222                                          


Q ss_pred             hccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCee
Q 042476          240 ILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHL  319 (433)
Q Consensus       240 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  319 (433)
                        ..|+++.+++|.+. ..+..+.++.++..+.+.+|++. ..+..++.+++++.|++++|.++...+  +....+++.+
T Consensus       209 --~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L  282 (394)
T COG4886         209 --SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLREL  282 (394)
T ss_pred             --hhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEE
Confidence              23555555555433 33444556666666666666665 335556666667777777777753333  6666777777


Q ss_pred             eCcCCcCcccCCCC
Q 042476          320 NLSENDLSGQIPSS  333 (433)
Q Consensus       320 ~L~~n~l~~~~p~~  333 (433)
                      ++++|.++..+|..
T Consensus       283 ~~s~n~~~~~~~~~  296 (394)
T COG4886         283 DLSGNSLSNALPLI  296 (394)
T ss_pred             eccCccccccchhh
Confidence            77777766554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=2.6e-11  Score=117.18  Aligned_cols=200  Identities=30%  Similarity=0.523  Sum_probs=140.0

Q ss_pred             EEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCC-CcCEEEccCCcccccCCccccCCCCCcEEECcCc
Q 042476           57 SLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLS-SLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN  135 (433)
Q Consensus        57 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  135 (433)
                      .+++..+.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            466766666322 223345578899999999988 5666666664 8999999999988 45566788999999999999


Q ss_pred             cccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccccc
Q 042476          136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYF  215 (433)
Q Consensus       136 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~  215 (433)
                      ++ ..+|.... ..++|+.|++++|.+. .+|........|+++.+++|... ..+..+..+.+                
T Consensus       174 ~l-~~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~----------------  233 (394)
T COG4886         174 DL-SDLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN----------------  233 (394)
T ss_pred             hh-hhhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc----------------
Confidence            98 46666654 5789999999999988 56665556667899999988643 33334444333                


Q ss_pred             ccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEE
Q 042476          216 VTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESL  295 (433)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  295 (433)
                                                  +..+.+.+|.+. ..+..++.+++++.|++++|.++ .++. ++.+.+++.|
T Consensus       234 ----------------------------l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L  282 (394)
T COG4886         234 ----------------------------LSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLREL  282 (394)
T ss_pred             ----------------------------ccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEE
Confidence                                        344445555554 22455667777888888888876 3333 6777788888


Q ss_pred             eCcCCcCCCCCCccc
Q 042476          296 DFSTNRLFGRIPQSM  310 (433)
Q Consensus       296 ~Ls~n~l~~~~~~~l  310 (433)
                      ++++|.++..++...
T Consensus       283 ~~s~n~~~~~~~~~~  297 (394)
T COG4886         283 DLSGNSLSNALPLIA  297 (394)
T ss_pred             eccCccccccchhhh
Confidence            888887776555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.19  E-value=4.1e-13  Score=126.24  Aligned_cols=194  Identities=29%  Similarity=0.416  Sum_probs=134.0

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      +.--...|++.|++. .+|..+..+..|+.+.|..|.+. .+|.++.++..|.+|+++.|.++ .+|..+..+ -|+.|.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence            444556777777776 56777777777777777777777 67777777888888888888776 566666555 477777


Q ss_pred             CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc
Q 042476          132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA  211 (433)
Q Consensus       132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~  211 (433)
                      +++|++ +.+|..+. .+..|.+|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..++             
T Consensus       150 ~sNNkl-~~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------  212 (722)
T KOG0532|consen  150 VSNNKL-TSLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------------  212 (722)
T ss_pred             EecCcc-ccCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence            787777 57777777 6777888888887776 56777777778888877777776 4554433221             


Q ss_pred             ccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCC--
Q 042476          212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNM--  289 (433)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l--  289 (433)
                                                      |..||++.|++. .+|..|.+|+.|++|-|.+|.+. ..|..++..  
T Consensus       213 --------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGk  258 (722)
T KOG0532|consen  213 --------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGK  258 (722)
T ss_pred             --------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccc
Confidence                                            567777777777 67777778888888888888776 334333222  


Q ss_pred             -CCCCEEeCcCC
Q 042476          290 -RSIESLDFSTN  300 (433)
Q Consensus       290 -~~L~~L~Ls~n  300 (433)
                       .=-+.|+..-|
T Consensus       259 VHIFKyL~~qA~  270 (722)
T KOG0532|consen  259 VHIFKYLSTQAC  270 (722)
T ss_pred             eeeeeeecchhc
Confidence             22344555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.17  E-value=1.3e-12  Score=116.14  Aligned_cols=90  Identities=22%  Similarity=0.296  Sum_probs=54.3

Q ss_pred             hhhccceeEEEcccCccccc----CCccccCCccCceEeCcCcccccCCCccc-----CCCCCCCEEeCcCCcCCCC---
Q 042476          238 NSILNLVRSIDISKNNFSGE----IPMQLTNLEGLQTLNLSHNFFVGKIPENI-----GNMRSIESLDFSTNRLFGR---  305 (433)
Q Consensus       238 ~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~---  305 (433)
                      +..++.|+.|||.+|.++..    +...+..+++|+.|++++|.+......++     ...|+|+.|.+.+|.++..   
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~  288 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL  288 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence            34466677777777776532    33345566677777777777654433332     2256777777777776532   


Q ss_pred             -CCccccCCCCCCeeeCcCCcCc
Q 042476          306 -IPQSMSSLSFLNHLNLSENDLS  327 (433)
Q Consensus       306 -~~~~l~~l~~L~~L~L~~n~l~  327 (433)
                       +...+...+.|+.|+|++|.+.
T Consensus       289 ~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  289 ALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHhcchhhHHhcCCccccc
Confidence             2233444566777777777763

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=4.5e-12  Score=115.74  Aligned_cols=209  Identities=22%  Similarity=0.230  Sum_probs=106.1

Q ss_pred             CCCCCCEEEccCCcCcccCC--cccCCCCCcCEEEccCCccccc--CCccccCCCCCcEEECcCccccccCChhhhhcCC
Q 042476           75 NWPHLQVLNLDDNYFTGNLP--ISIGTLSSLRSLHLRNNRLAGI--FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP  150 (433)
Q Consensus        75 ~l~~L~~L~L~~n~i~~~~p--~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  150 (433)
                      ++.+|+++.|.++.+. ..+  .....+++++.|+|++|-+...  +......+++|+.|+++.|++.-.........++
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            4455666666655554 222  1334456666666666655422  1122345566666666666552222222222345


Q ss_pred             CccEEEeeCcccccc-CCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceee
Q 042476          151 RLLILNLRSNKFNGS-LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVV  229 (433)
Q Consensus       151 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  229 (433)
                      +|+.|.++.|.++-. +...+..+|+|+.|++..|........                                     
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-------------------------------------  240 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-------------------------------------  240 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-------------------------------------
Confidence            566666666655511 112234455566666655531100000                                     


Q ss_pred             eccceeehhhhccceeEEEcccCccccc-CCccccCCccCceEeCcCcccccC-CCcc-----cCCCCCCCEEeCcCCcC
Q 042476          230 TKGLLVEYNSILNLVRSIDISKNNFSGE-IPMQLTNLEGLQTLNLSHNFFVGK-IPEN-----IGNMRSIESLDFSTNRL  302 (433)
Q Consensus       230 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-----l~~l~~L~~L~Ls~n~l  302 (433)
                             ....++.|++|+|++|.+... .-...+.++.|+.|+++.+.+... .|+.     ...+++|+.|+++.|++
T Consensus       241 -------~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  241 -------STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             -------hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence                   011234466777777665421 123456677777777777776532 2221     24457778888887777


Q ss_pred             CCC-CCccccCCCCCCeeeCcCCcCcc
Q 042476          303 FGR-IPQSMSSLSFLNHLNLSENDLSG  328 (433)
Q Consensus       303 ~~~-~~~~l~~l~~L~~L~L~~n~l~~  328 (433)
                      ... --..+..+++|+.|.+..|.++.
T Consensus       314 ~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  314 RDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccccchhhccchhhhhhcccccccc
Confidence            421 11234455667777777777653

>PLN03150 hypothetical protein; Provisional

Probab=99.13  E-value=1.4e-10  Score=117.35  Aligned_cols=108  Identities=33%  Similarity=0.485  Sum_probs=78.4

Q ss_pred             CCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEee
Q 042476           79 LQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLR  158 (433)
Q Consensus        79 L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  158 (433)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEECc
Confidence            56677777777777777777777777777777777777777777777777777777777777777666 67777777777


Q ss_pred             CccccccCCccccCC-CCcCEEEccCCcCc
Q 042476          159 SNKFNGSLPVQLCHL-TFLRILDVAHNNLS  187 (433)
Q Consensus       159 ~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~  187 (433)
                      +|.+.+.+|..+... .++..+++.+|...
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccc
Confidence            777777777766543 35566777766543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=8.8e-12  Score=113.90  Aligned_cols=208  Identities=22%  Similarity=0.213  Sum_probs=128.1

Q ss_pred             CCCCCcCEEEccCCcccccCC--ccccCCCCCcEEECcCccccccC-ChhhhhcCCCccEEEeeCccccccCCc-cccCC
Q 042476           98 GTLSSLRSLHLRNNRLAGIFP--VSLKNCSSLISLDIGENDFFGSI-PTWVGERFPRLLILNLRSNKFNGSLPV-QLCHL  173 (433)
Q Consensus        98 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l  173 (433)
                      +++.+|+.+.|.++.+. ..+  .....|++++.|||+.|-+..-. -..+.+.+++|+.|+++.|.+...... .-..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            35667777777777655 222  24556777777777777552111 123334677777777777776522111 11234


Q ss_pred             CCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCc
Q 042476          174 TFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNN  253 (433)
Q Consensus       174 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  253 (433)
                      +.|+.|.++.|.++.                                           .........++.|+.|+|..|.
T Consensus       197 ~~lK~L~l~~CGls~-------------------------------------------k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSW-------------------------------------------KDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             hhhheEEeccCCCCH-------------------------------------------HHHHHHHHhCCcHHHhhhhccc
Confidence            556666666666541                                           1111223347788999999985


Q ss_pred             ccccCCccccCCccCceEeCcCcccccCC-CcccCCCCCCCEEeCcCCcCCCC-CCcc-----ccCCCCCCeeeCcCCcC
Q 042476          254 FSGEIPMQLTNLEGLQTLNLSHNFFVGKI-PENIGNMRSIESLDFSTNRLFGR-IPQS-----MSSLSFLNHLNLSENDL  326 (433)
Q Consensus       254 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l  326 (433)
                      ...........++.|++|+|++|++.... ....+.++.|..|+++.|.+... .|+.     ....++|+.|++..|++
T Consensus       234 ~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  234 IILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            43333444556789999999999986332 13467899999999999988753 3443     45678999999999999


Q ss_pred             cccCCCC---cccCccCcccccCCcCC
Q 042476          327 SGQIPSS---TQLQSFGASCFSGNDLC  350 (433)
Q Consensus       327 ~~~~p~~---~~~~~l~~~~~~~n~l~  350 (433)
                      .. .+..   ..+.++..+.+.+|.+.
T Consensus       314 ~~-w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  314 RD-WRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cc-ccccchhhccchhhhhhccccccc
Confidence            53 2322   33344455555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.09  E-value=3.8e-12  Score=113.13  Aligned_cols=238  Identities=21%  Similarity=0.248  Sum_probs=157.1

Q ss_pred             CCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCc---CcCcCCc-------ccCCCCCCCEEEccCCcCcccC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNY---FSGDIPD-------CWMNWPHLQVLNLDDNYFTGNL   93 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~---l~~~~~~-------~~~~l~~L~~L~L~~n~i~~~~   93 (433)
                      +.+++.+++++|.|.......++.. ...+.|+..+++.-.   ....+|.       ++..+++|++++||+|.+....
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            6689999999999986655555444 456788888887542   2233443       3456789999999999988655


Q ss_pred             Ccc----cCCCCCcCEEEccCCccccc-------------CCccccCCCCCcEEECcCccccccCCh----hhhhcCCCc
Q 042476           94 PIS----IGTLSSLRSLHLRNNRLAGI-------------FPVSLKNCSSLISLDIGENDFFGSIPT----WVGERFPRL  152 (433)
Q Consensus        94 p~~----~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~l~~L  152 (433)
                      +..    +..+..|++|.|.+|.+...             .......-+.|++++...|++ +.-+.    ..+...+.|
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENGGATALAEAFQSHPTL  187 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccccHHHHHHHHHhcccc
Confidence            544    35678999999999987521             112234567899999999887 33332    233456889


Q ss_pred             cEEEeeCcccccc----CCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeeccee
Q 042476          153 LILNLRSNKFNGS----LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASV  228 (433)
Q Consensus       153 ~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  228 (433)
                      +.+.+..|.+...    +..++..+++|++|||..|-++..-...+                                  
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L----------------------------------  233 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL----------------------------------  233 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH----------------------------------
Confidence            9999998887622    23467788999999999988763211111                                  


Q ss_pred             eeccceeehhhhccceeEEEcccCcccccCCcc----c-cCCccCceEeCcCcccccC----CCcccCCCCCCCEEeCcC
Q 042476          229 VTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ----L-TNLEGLQTLNLSHNFFVGK----IPENIGNMRSIESLDFST  299 (433)
Q Consensus       229 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~----~-~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~  299 (433)
                            ...++.++.|+.|++++|.+...-...    + ...++|+.|.+.+|.++..    +...+...|.|..|+|++
T Consensus       234 ------akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  234 ------AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG  307 (382)
T ss_pred             ------HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence                  112223555777777777764322111    1 2357888888888887633    223345578888999999


Q ss_pred             CcCC
Q 042476          300 NRLF  303 (433)
Q Consensus       300 n~l~  303 (433)
                      |++.
T Consensus       308 N~l~  311 (382)
T KOG1909|consen  308 NRLG  311 (382)
T ss_pred             cccc
Confidence            9883

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=2.6e-11  Score=105.69  Aligned_cols=130  Identities=24%  Similarity=0.288  Sum_probs=92.8

Q ss_pred             CCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceee
Q 042476          150 PRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVV  229 (433)
Q Consensus       150 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  229 (433)
                      ..|+++||++|.++ .+..++.-++.++.|+++.|.+...     +++                                
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-----~nL--------------------------------  325 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-----QNL--------------------------------  325 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-----hhh--------------------------------
Confidence            45788888888887 5667777778888888888887621     111                                


Q ss_pred             eccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCC-CCc
Q 042476          230 TKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGR-IPQ  308 (433)
Q Consensus       230 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~  308 (433)
                               ..+++|+.|||++|.++ .+..+-..+-++++|.|++|.+..  -.-++.+.+|..||+++|++... --.
T Consensus       326 ---------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~  393 (490)
T KOG1259|consen  326 ---------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVN  393 (490)
T ss_pred             ---------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhc
Confidence                     12456788888888876 333444567788899999988752  22356677889999999988543 234


Q ss_pred             cccCCCCCCeeeCcCCcCccc
Q 042476          309 SMSSLSFLNHLNLSENDLSGQ  329 (433)
Q Consensus       309 ~l~~l~~L~~L~L~~n~l~~~  329 (433)
                      .+++++-|+.+.|.+|++.+.
T Consensus       394 ~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  394 HIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ccccccHHHHHhhcCCCcccc
Confidence            678888889999999988853

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1.5e-10  Score=96.47  Aligned_cols=36  Identities=25%  Similarity=0.347  Sum_probs=7.5

Q ss_pred             CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCc
Q 042476           53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT   90 (433)
Q Consensus        53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~   90 (433)
                      .+|+.|++++|.++..  +.+..++.|++|++++|.++
T Consensus        42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             TT--EEE-TTS--S----TT----TT--EEE--SS---
T ss_pred             cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC
Confidence            3444444444444421  12333444444444444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=2.5e-10  Score=95.15  Aligned_cols=81  Identities=31%  Similarity=0.396  Sum_probs=15.0

Q ss_pred             CCCccEEEcCCCcCcCcCCcccC-CCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccc-cCCCCCcE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWM-NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSL-KNCSSLIS  129 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~  129 (433)
                      ..++++|+|++|.|+.+  +.+. .+.+|+.|++++|.++. +. .+..+++|+.|++++|.|+.+ ...+ ..+++|++
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence            33445555555555422  1222 34445555555555552 11 234444555555555555432 1122 23445555


Q ss_pred             EECcCccc
Q 042476          130 LDIGENDF  137 (433)
Q Consensus       130 L~L~~n~~  137 (433)
                      |++++|++
T Consensus        93 L~L~~N~I  100 (175)
T PF14580_consen   93 LYLSNNKI  100 (175)
T ss_dssp             EE-TTS--
T ss_pred             EECcCCcC
Confidence            55555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.05  E-value=1.8e-10  Score=119.36  Aligned_cols=278  Identities=21%  Similarity=0.214  Sum_probs=167.0

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCc--CcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNY--FSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSS  102 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~  102 (433)
                      ....+.+.+.+|.+... +..    ..+++|++|-+..|.  +....++.|..|+.|++|||++|.-.+.+|..++.+-+
T Consensus       522 ~~~~rr~s~~~~~~~~~-~~~----~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHI-AGS----SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             hhheeEEEEeccchhhc-cCC----CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            44677777777776432 222    336688888888885  55555666888999999999988777789999999999


Q ss_pred             cCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcccc--ccCCccccCCCCcCEEE
Q 042476          103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN--GSLPVQLCHLTFLRILD  180 (433)
Q Consensus       103 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~  180 (433)
                      ||+|+++++.+. .+|..++++..|.+|++..+.....+ +.+...+.+|++|.+......  ...-..+.++++|+.+.
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls  674 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS  674 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence            999999999988 78889999999999999988764455 444436899999988765422  11122334455555554


Q ss_pred             ccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCc
Q 042476          181 VAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPM  260 (433)
Q Consensus       181 l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~  260 (433)
                      ......  .+-..+..+..|..+......                 ..............+.+|+.|.+.++.+......
T Consensus       675 ~~~~s~--~~~e~l~~~~~L~~~~~~l~~-----------------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~  735 (889)
T KOG4658|consen  675 ITISSV--LLLEDLLGMTRLRSLLQSLSI-----------------EGCSKRTLISSLGSLGNLEELSILDCGISEIVIE  735 (889)
T ss_pred             eecchh--HhHhhhhhhHHHHHHhHhhhh-----------------cccccceeecccccccCcceEEEEcCCCchhhcc
Confidence            432222  111112233333222111100                 0011122233344567788888888877533221


Q ss_pred             cccC------CccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCccc
Q 042476          261 QLTN------LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQ  329 (433)
Q Consensus       261 ~~~~------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  329 (433)
                      ....      ++++..+...++... ..+.+....++|+.|.+..+...+.+......+..++.+-+..+.+.+.
T Consensus       736 ~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  736 WEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             cccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence            1111      223444433333322 2222233457888888888877666666566666666666666666553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=7.6e-10  Score=75.86  Aligned_cols=59  Identities=37%  Similarity=0.520  Sum_probs=31.3

Q ss_pred             CccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCc
Q 042476           54 VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNR  112 (433)
Q Consensus        54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~  112 (433)
                      +|++|++++|+++...++.|.++++|++|++++|.+....|.+|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555554444455555555555555555554444455555555555555554

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=4.3e-10  Score=98.22  Aligned_cols=134  Identities=26%  Similarity=0.311  Sum_probs=99.7

Q ss_pred             ccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccc
Q 042476          121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAM  200 (433)
Q Consensus       121 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L  200 (433)
                      +..-+.|+++|+++|.+ ..+...+- -.|.++.|++++|.+...  +.+..+++|+.||+++|.++ .+..+-.     
T Consensus       280 ~dTWq~LtelDLS~N~I-~~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~-----  349 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLI-TQIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHL-----  349 (490)
T ss_pred             cchHhhhhhccccccch-hhhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHh-----
Confidence            33456789999999988 45655554 579999999999999843  45889999999999999886 2222111     


Q ss_pred             cccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCccccc
Q 042476          201 ATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVG  280 (433)
Q Consensus       201 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  280 (433)
                                                             .+-+++.|.|++|.+...  ..+..+-+|..||+++|++..
T Consensus       350 ---------------------------------------KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~  388 (490)
T KOG1259|consen  350 ---------------------------------------KLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEE  388 (490)
T ss_pred             ---------------------------------------hhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhh
Confidence                                                   134577888888887522  345666788999999999863


Q ss_pred             C-CCcccCCCCCCCEEeCcCCcCCCC
Q 042476          281 K-IPENIGNMRSIESLDFSTNRLFGR  305 (433)
Q Consensus       281 ~-~~~~l~~l~~L~~L~Ls~n~l~~~  305 (433)
                      . -...++++|-|+.+.|.+|.+.+.
T Consensus       389 ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  389 LDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             HHHhcccccccHHHHHhhcCCCcccc
Confidence            2 235688999999999999999743

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=1.6e-09  Score=74.28  Aligned_cols=61  Identities=36%  Similarity=0.542  Sum_probs=45.4

Q ss_pred             CCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccc
Q 042476           77 PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDF  137 (433)
Q Consensus        77 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  137 (433)
                      ++|++|++++|++....+..|.++++|++|++++|.+..+.+..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677777777777765556777777788888877777777777777777777777777753

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.81  E-value=2e-09  Score=111.60  Aligned_cols=132  Identities=23%  Similarity=0.218  Sum_probs=100.5

Q ss_pred             CCCccEEEccCCc--ccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCC
Q 042476           25 PFEFGLLDLSNNA--LSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSS  102 (433)
Q Consensus        25 ~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~  102 (433)
                      ++.|++|-+.+|.  +. .++..|+  ..++.|++|||++|.--+.+|..++.+-+|++|++++..+. .+|..+.+++.
T Consensus       544 ~~~L~tLll~~n~~~l~-~is~~ff--~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~  619 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLL-EISGEFF--RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK  619 (889)
T ss_pred             CCccceEEEeecchhhh-hcCHHHH--hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence            5679999999996  44 3433332  55999999999998766789999999999999999999999 89999999999


Q ss_pred             cCEEEccCCcccccCCccccCCCCCcEEECcCccc--cccCChhhhhcCCCccEEEeeCcc
Q 042476          103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDF--FGSIPTWVGERFPRLLILNLRSNK  161 (433)
Q Consensus       103 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~L~~n~  161 (433)
                      |.+|++..+.-...+|.....+++|++|.+.....  ....-..+ ..+.+|+.+......
T Consensus       620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISS  679 (889)
T ss_pred             hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecch
Confidence            99999998876556677777899999999876531  11122222 256666666654433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=1.1e-09  Score=106.18  Aligned_cols=245  Identities=22%  Similarity=0.239  Sum_probs=127.5

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      +..++.+.+..|.++. +-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.|+.+.  .+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence            4555666666666653 22334556667777777777663 3333556677777777777776442  345566677777


Q ss_pred             CcCccccccCChhhhhcCCCccEEEeeCccccccCC-ccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccc
Q 042476          132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP-VQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKN  210 (433)
Q Consensus       132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~  210 (433)
                      +++|.+. .+. ++. .+++|+.+++++|.+...-+ . ...+.+++.+++.+|.+...-  .+..+..+..+++..+..
T Consensus       147 l~~N~i~-~~~-~~~-~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  147 LSGNLIS-DIS-GLE-SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eccCcch-hcc-CCc-cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence            7777662 222 211 36677777777777663322 1 456666777777776664211  111222222111111110


Q ss_pred             cccccccCCceeeecceeeeccceeehhhhcc--ceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCC
Q 042476          211 AIYYFVTRGNIVFEDASVVTKGLLVEYNSILN--LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN  288 (433)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  288 (433)
                      ..                      ........  .|+.+++++|.+.. .+..+..+..+..|++.+|++...  ..+..
T Consensus       221 ~~----------------------~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~  275 (414)
T KOG0531|consen  221 SK----------------------LEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLER  275 (414)
T ss_pred             ee----------------------ccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccc
Confidence            00                      00000011  25666777777652 224455666777777777776522  12334


Q ss_pred             CCCCCEEeCcCCcCCCC---CCcc-ccCCCCCCeeeCcCCcCcccCC
Q 042476          289 MRSIESLDFSTNRLFGR---IPQS-MSSLSFLNHLNLSENDLSGQIP  331 (433)
Q Consensus       289 l~~L~~L~Ls~n~l~~~---~~~~-l~~l~~L~~L~L~~n~l~~~~p  331 (433)
                      .+.+..+....|.+...   .... ....+.++.+.+.+|+.....+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  276 LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            45566666666655421   1111 3445667777777776665433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=1.1e-09  Score=106.06  Aligned_cols=241  Identities=23%  Similarity=0.262  Sum_probs=153.0

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      .+.++.++...+.+....-. ...+..++.+.+..|.+.. +-..+..+++|+.|++.+|.|..+. ..+..+++|++|+
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~  124 (414)
T KOG0531|consen   48 PSDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLD  124 (414)
T ss_pred             cchhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchhee
Confidence            34555556555544322111 1456677788888888883 3445778899999999999998543 3367899999999


Q ss_pred             CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc
Q 042476          132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA  211 (433)
Q Consensus       132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~  211 (433)
                      +++|.+. .+..- . .++.|+.|++.+|.+...  ..+..+++|+.+++++|.+...-+.....+.+++.+.+..+...
T Consensus       125 ls~N~I~-~i~~l-~-~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  125 LSFNKIT-KLEGL-S-TLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccccccc-cccch-h-hccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            9999994 33222 2 577899999999999843  45666899999999999997433310355666666666555311


Q ss_pred             ccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCc--cCceEeCcCcccccCCCcccCCC
Q 042476          212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE--GLQTLNLSHNFFVGKIPENIGNM  289 (433)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~~l  289 (433)
                      ..                      .....+..+..+++..|.++..-+.  ..+.  +|+.+++++|.+. ..+..+..+
T Consensus       200 ~i----------------------~~~~~~~~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n~i~-~~~~~~~~~  254 (414)
T KOG0531|consen  200 EI----------------------EGLDLLKKLVLLSLLDNKISKLEGL--NELVMLHLRELYLSGNRIS-RSPEGLENL  254 (414)
T ss_pred             cc----------------------cchHHHHHHHHhhcccccceeccCc--ccchhHHHHHHhcccCccc-ccccccccc
Confidence            10                      1111122344446667776533221  1222  3788888888876 333455666


Q ss_pred             CCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCc
Q 042476          290 RSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS  327 (433)
Q Consensus       290 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  327 (433)
                      ..+..|++.+|++...-  .+.....+..+....|++.
T Consensus       255 ~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  255 KNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence            77888888888775321  2334455666666666655

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=8.1e-10  Score=96.46  Aligned_cols=60  Identities=22%  Similarity=0.224  Sum_probs=30.9

Q ss_pred             hhccceeEEEcccCcc-cccCCccccCCccCceEeCcCcccccCCCcc---cCCCCCCCEEeCcCC
Q 042476          239 SILNLVRSIDISKNNF-SGEIPMQLTNLEGLQTLNLSHNFFVGKIPEN---IGNMRSIESLDFSTN  300 (433)
Q Consensus       239 ~~~~~L~~L~L~~n~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~Ls~n  300 (433)
                      ..+++|.+|||++|.. +......|.+++.|++|.++.|..  .+|+.   +...|+|.+||+-++
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            3456666666666543 222233445556666666666652  23332   344556666665544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.47  E-value=3.8e-09  Score=102.69  Aligned_cols=113  Identities=29%  Similarity=0.350  Sum_probs=87.7

Q ss_pred             ehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCC
Q 042476          236 EYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSF  315 (433)
Q Consensus       236 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  315 (433)
                      ..+..++.++.|+|++|+++...  .+..+++|++|||+.|.+. .+|..-..-..|+.|++++|.++..  ..+.++.+
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~Lks  255 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKS  255 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhh
Confidence            34556778999999999998543  6778999999999999997 5554322224599999999998643  34678899


Q ss_pred             CCeeeCcCCcCcc--cCCCCcccCccCcccccCCcCCCCC
Q 042476          316 LNHLNLSENDLSG--QIPSSTQLQSFGASCFSGNDLCGAP  353 (433)
Q Consensus       316 L~~L~L~~n~l~~--~~p~~~~~~~l~~~~~~~n~l~~~~  353 (433)
                      |+.||+++|-+.+  .+...+.+..+..+.+.||++|..|
T Consensus       256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            9999999998875  3445577788888999999998764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=3.2e-08  Score=86.61  Aligned_cols=82  Identities=18%  Similarity=0.152  Sum_probs=49.5

Q ss_pred             ccceeEEEcccCcccc-cCCccccCCccCceEeCcCcccccC-CCcccCCCCCCCEEeCcCCcCCCCCCc------cccC
Q 042476          241 LNLVRSIDISKNNFSG-EIPMQLTNLEGLQTLNLSHNFFVGK-IPENIGNMRSIESLDFSTNRLFGRIPQ------SMSS  312 (433)
Q Consensus       241 ~~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~------~l~~  312 (433)
                      ++++..+.+..|.+.. .....+..++.+..|+|+.|++... -.+++..+++|..|.++++.+...+..      .++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            5566666666665421 2233445556667788888887422 335577788888888888877643321      2355


Q ss_pred             CCCCCeeeCc
Q 042476          313 LSFLNHLNLS  322 (433)
Q Consensus       313 l~~L~~L~L~  322 (433)
                      +++++.|+=+
T Consensus       278 L~~v~vLNGs  287 (418)
T KOG2982|consen  278 LTKVQVLNGS  287 (418)
T ss_pred             ccceEEecCc
Confidence            6666665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=2.4e-08  Score=97.30  Aligned_cols=126  Identities=22%  Similarity=0.250  Sum_probs=91.3

Q ss_pred             CCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEE
Q 042476           77 PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILN  156 (433)
Q Consensus        77 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  156 (433)
                      ..|.+.+.++|.+. ....++.-++.|++|+|++|+++..  +.+..++.|++|||++|.+ ..+|..-..++. |+.|.
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchh-ccccccchhhhh-heeee
Confidence            35777788888887 5667777788899999999998754  3788899999999999988 466554333444 89999


Q ss_pred             eeCccccccCCccccCCCCcCEEEccCCcCcccCC-CCcccccccccccccccc
Q 042476          157 LRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIP-RCINNFTAMATINSSNQK  209 (433)
Q Consensus       157 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~~~  209 (433)
                      +++|.++..  ..+.++.+|+.||+++|-+.+.-. ..+..+..|..|.+.+|.
T Consensus       239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            999988733  356788889999999988763211 123455666666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.29  E-value=9.9e-08  Score=82.58  Aligned_cols=87  Identities=17%  Similarity=0.208  Sum_probs=53.3

Q ss_pred             ccceeEEEcccCccccc----CCccccCCccCceEeCcCcccccCCCccc------CCCCCCCEEeCcCCcCCCCCCcc-
Q 042476          241 LNLVRSIDISKNNFSGE----IPMQLTNLEGLQTLNLSHNFFVGKIPENI------GNMRSIESLDFSTNRLFGRIPQS-  309 (433)
Q Consensus       241 ~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l------~~l~~L~~L~Ls~n~l~~~~~~~-  309 (433)
                      +.+|+.||+..|.++..    +...+..++.|+.|.+.+|-++.....++      ...|+|+.|-..+|...+.+-.. 
T Consensus       213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~  292 (388)
T COG5238         213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDI  292 (388)
T ss_pred             hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeee
Confidence            55678888888877632    23345566778888888887765544332      12478888888888765432111 


Q ss_pred             c------cCCCCCCeeeCcCCcCc
Q 042476          310 M------SSLSFLNHLNLSENDLS  327 (433)
Q Consensus       310 l------~~l~~L~~L~L~~n~l~  327 (433)
                      +      ..++-|..+.+.+|++.
T Consensus       293 ~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         293 SLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             chhhhhhcccHHHHHHHHccCcch
Confidence            1      23455555666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.26  E-value=2.6e-07  Score=80.01  Aligned_cols=236  Identities=17%  Similarity=0.183  Sum_probs=140.5

Q ss_pred             CCCCCEEEccCCcCcccC----CcccCCCCCcCEEEccCCccc---c-------cCCccccCCCCCcEEECcCccccccC
Q 042476           76 WPHLQVLNLDDNYFTGNL----PISIGTLSSLRSLHLRNNRLA---G-------IFPVSLKNCSSLISLDIGENDFFGSI  141 (433)
Q Consensus        76 l~~L~~L~L~~n~i~~~~----p~~~~~l~~L~~L~L~~n~l~---~-------~~~~~~~~l~~L~~L~L~~n~~~~~~  141 (433)
                      +..++.++|++|.|...-    ...+.+-.+|+..+++.-...   .       .+-.++.+||.|+..+|++|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            455666666666665322    222344456666655543211   1       12234557788888888888775555


Q ss_pred             Chhhh---hcCCCccEEEeeCcccccc----CCc---------cccCCCCcCEEEccCCcCcccCCCCcccccccccccc
Q 042476          142 PTWVG---ERFPRLLILNLRSNKFNGS----LPV---------QLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINS  205 (433)
Q Consensus       142 ~~~~~---~~l~~L~~L~L~~n~l~~~----~~~---------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  205 (433)
                      |..+.   ++-+.|++|.+++|.+...    +..         -...-|.|++..+..|++. ..|....          
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~----------  177 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELS----------  177 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHH----------
Confidence            54433   3556788888888876521    111         1234567888888888875 2221110          


Q ss_pred             ccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCccccc-----CCccccCCccCceEeCcCccccc
Q 042476          206 SNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGE-----IPMQLTNLEGLQTLNLSHNFFVG  280 (433)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-----~~~~~~~l~~L~~L~Ls~n~l~~  280 (433)
                                                   ...+..-.+|..+.+..|.|...     .-..+..+++|+.|||.+|-++.
T Consensus       178 -----------------------------a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         178 -----------------------------AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             -----------------------------HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence                                         00011123578888888887533     11123567899999999999874


Q ss_pred             CC----CcccCCCCCCCEEeCcCCcCCCCCCccc------cCCCCCCeeeCcCCcCcccCCCC--------cccCccCcc
Q 042476          281 KI----PENIGNMRSIESLDFSTNRLFGRIPQSM------SSLSFLNHLNLSENDLSGQIPSS--------TQLQSFGAS  342 (433)
Q Consensus       281 ~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l------~~l~~L~~L~L~~n~l~~~~p~~--------~~~~~l~~~  342 (433)
                      ..    ...+...+.|..|.+..|-++..-...+      ...++|..|-..+|...+.+-..        +.++.+..+
T Consensus       229 ~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l  308 (388)
T COG5238         229 EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL  308 (388)
T ss_pred             hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH
Confidence            42    3445566789999999998865432221      13477888888898876533222        445556667


Q ss_pred             cccCCcCCC
Q 042476          343 CFSGNDLCG  351 (433)
Q Consensus       343 ~~~~n~l~~  351 (433)
                      +..||.+..
T Consensus       309 e~ngNr~~E  317 (388)
T COG5238         309 ERNGNRIKE  317 (388)
T ss_pred             HHccCcchh
Confidence            778887654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.5e-08  Score=88.60  Aligned_cols=179  Identities=14%  Similarity=0.120  Sum_probs=100.4

Q ss_pred             CCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCc-Ccc-cCCCCcccccccccc
Q 042476          126 SLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNN-LSG-TIPRCINNFTAMATI  203 (433)
Q Consensus       126 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~p~~~~~l~~L~~L  203 (433)
                      .|++|||+...++..--..+.+.+.+|+.|.+.++.+...+...+++-.+|+.|+++.+. ++. ...-.+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            477778777766544445555567777888887777776666667777778888777653 221 011134566667777


Q ss_pred             ccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCccc---ccCCccccCCccCceEeCcCccc-c
Q 042476          204 NSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFS---GEIPMQLTNLEGLQTLNLSHNFF-V  279 (433)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~Ls~n~l-~  279 (433)
                      +++.|+...+..                  ....-..-++|+.|+++|+.-.   ..+..-...+++|..|||++|.. +
T Consensus       266 NlsWc~l~~~~V------------------tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  266 NLSWCFLFTEKV------------------TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             CchHhhccchhh------------------hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence            766665221110                  0000111234566666665421   11111224567777777777653 3


Q ss_pred             cCCCcccCCCCCCCEEeCcCCcCCCCCCcc---ccCCCCCCeeeCcCC
Q 042476          280 GKIPENIGNMRSIESLDFSTNRLFGRIPQS---MSSLSFLNHLNLSEN  324 (433)
Q Consensus       280 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n  324 (433)
                      .....+|..++.|++|.++.|..  .+|..   +...++|.+||+.++
T Consensus       328 ~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  328 NDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             chHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            33334456667777777777753  44443   345566777776654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.12  E-value=8.8e-08  Score=74.32  Aligned_cols=90  Identities=28%  Similarity=0.306  Sum_probs=45.5

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      ..+|+..+|++|.+....+..-..++.+++|++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            345555555555555222222223345555555555555 45555555555555555555555 3444444455555555


Q ss_pred             CcCccccccCChh
Q 042476          132 IGENDFFGSIPTW  144 (433)
Q Consensus       132 L~~n~~~~~~~~~  144 (433)
                      ..+|.. ..+|..
T Consensus       130 s~~na~-~eid~d  141 (177)
T KOG4579|consen  130 SPENAR-AEIDVD  141 (177)
T ss_pred             CCCCcc-ccCcHH
Confidence            555544 344433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.01  E-value=1.9e-07  Score=72.53  Aligned_cols=86  Identities=28%  Similarity=0.440  Sum_probs=64.3

Q ss_pred             ceeEEEcccCcccccCCccc-cCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC
Q 042476          243 LVRSIDISKNNFSGEIPMQL-TNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL  321 (433)
Q Consensus       243 ~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  321 (433)
                      .|+..+|++|.+. .+|..| ..++.++.|+|++|.++ .+|.++..++.|+.|++++|.+. ..|..+..+.++..|+.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            3677788888887 444444 34567888888888887 77888888888899999888885 56666666888888888


Q ss_pred             cCCcCcccCCC
Q 042476          322 SENDLSGQIPS  332 (433)
Q Consensus       322 ~~n~l~~~~p~  332 (433)
                      .+|... .+|.
T Consensus       131 ~~na~~-eid~  140 (177)
T KOG4579|consen  131 PENARA-EIDV  140 (177)
T ss_pred             CCCccc-cCcH
Confidence            888776 3443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=4.9e-06  Score=73.28  Aligned_cols=68  Identities=15%  Similarity=0.218  Sum_probs=49.7

Q ss_pred             CccCceEeCcCcccccC-CCcccCCCCCCCEEeCcCCcCCCC-CCccccCCCCCCeeeCcCCcCcccCCC
Q 042476          265 LEGLQTLNLSHNFFVGK-IPENIGNMRSIESLDFSTNRLFGR-IPQSMSSLSFLNHLNLSENDLSGQIPS  332 (433)
Q Consensus       265 l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~  332 (433)
                      ++++..+.+..|.+..+ .-+.+..+|.+.-|+|+.|++... --+.+..++.|..|.+++|++...+..
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence            46778888888877533 223456678888999999998542 224577889999999999998865443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.91  E-value=1.1e-05  Score=50.56  Aligned_cols=36  Identities=36%  Similarity=0.643  Sum_probs=17.2

Q ss_pred             CCCEEEccCCcCcccCCcccCCCCCcCEEEccCCccc
Q 042476           78 HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA  114 (433)
Q Consensus        78 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~  114 (433)
                      +|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555555 33444555555555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=8.3e-06  Score=51.13  Aligned_cols=35  Identities=31%  Similarity=0.642  Sum_probs=14.3

Q ss_pred             cCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcC
Q 042476          267 GLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRL  302 (433)
Q Consensus       267 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  302 (433)
                      +|++|++++|+++ .+|..++.+++|+.|++++|++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            3444444444444 2333344444444444444444

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.85  E-value=3.8e-05  Score=64.01  Aligned_cols=102  Identities=26%  Similarity=0.307  Sum_probs=55.1

Q ss_pred             CCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCcccc--ccCChhhhhcCCCccEE
Q 042476           78 HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFF--GSIPTWVGERFPRLLIL  155 (433)
Q Consensus        78 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~~l~~L~~L  155 (433)
                      +...+||++|.+...  ..|..++.|++|.+.+|+|+.+-|.--..+++|+.|.+.+|.+.  +.+.+-.  .+|.|++|
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa--~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA--SCPKLEYL  118 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc--cCCcccee
Confidence            445566666665521  24455566666666666666555544444556666666666541  1222221  35666666


Q ss_pred             EeeCccccccC---CccccCCCCcCEEEccC
Q 042476          156 NLRSNKFNGSL---PVQLCHLTFLRILDVAH  183 (433)
Q Consensus       156 ~L~~n~l~~~~---~~~l~~l~~L~~L~l~~  183 (433)
                      .+-+|.....-   ...+..+++|++||.+.
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhh
Confidence            66666554221   12355667777777664

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=9.6e-05  Score=69.64  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=20.5

Q ss_pred             cceeEEEcccCcccccCCccccCCccCceEeCcCcc
Q 042476          242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNF  277 (433)
Q Consensus       242 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~  277 (433)
                      +.|++|++++|... ..|..+.  .+|+.|+++.+.
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            45777777777755 3343332  577777776653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.72  E-value=1.3e-05  Score=81.50  Aligned_cols=134  Identities=18%  Similarity=0.234  Sum_probs=80.6

Q ss_pred             CCCccEEEcCCCcC-cCcCCcccC-CCCCCCEEEccCCcCccc-CCcccCCCCCcCEEEccCCcccccCCccccCCCCCc
Q 042476           52 KSVIISLKLSKNYF-SGDIPDCWM-NWPHLQVLNLDDNYFTGN-LPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLI  128 (433)
Q Consensus        52 ~~~L~~L~L~~n~l-~~~~~~~~~-~l~~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  128 (433)
                      -.+|++|++++... ....|..++ -+|.|+.|.+++-.+... .-....++++|..||+++++++..  ..++++++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            46777777777542 222233332 467788887777665422 223345677888888888777744  5567777777


Q ss_pred             EEECcCccccc-cCChhhhhcCCCccEEEeeCccccccC--C----ccccCCCCcCEEEccCCcCcc
Q 042476          129 SLDIGENDFFG-SIPTWVGERFPRLLILNLRSNKFNGSL--P----VQLCHLTFLRILDVAHNNLSG  188 (433)
Q Consensus       129 ~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~~~~  188 (433)
                      +|.+.+-.+.. ..-..+| .+++|+.||+|........  .    +.-..+|+|+.||.+++.+.+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            77777655521 1223455 6788888888766543211  0    112347788888888776653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.67  E-value=0.00018  Score=57.40  Aligned_cols=105  Identities=19%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             ccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCC
Q 042476           72 CWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPR  151 (433)
Q Consensus        72 ~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  151 (433)
                      +|.++.+|+.+.+.. .+......+|.++++|+.+.+.++ +..+....|..+++++.+.+.. .+ ..++...+..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~-~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NL-KSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cc-ccccccccccccc
Confidence            344444444444442 233233334444444555554443 3333333444444455555433 11 2333333433455


Q ss_pred             ccEEEeeCccccccCCccccCCCCcCEEEcc
Q 042476          152 LLILNLRSNKFNGSLPVQLCHLTFLRILDVA  182 (433)
Q Consensus       152 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  182 (433)
                      |+.+.+..+ +.......+.+. +++.+.+.
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            555555433 222223344444 45555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.66  E-value=9.9e-05  Score=61.60  Aligned_cols=108  Identities=23%  Similarity=0.227  Sum_probs=70.0

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccC-CccccCCCCCcEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIF-PVSLKNCSSLISL  130 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L  130 (433)
                      ......+||++|.+..  -+.|..++.|.+|.+.+|.|+.+.|.--.-+++|+.|.+.+|.|...- -..+..+++|++|
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            4566677888887653  244667778888888888888665555455677888888888776321 0225677888888


Q ss_pred             ECcCccccccC--ChhhhhcCCCccEEEeeCcc
Q 042476          131 DIGENDFFGSI--PTWVGERFPRLLILNLRSNK  161 (433)
Q Consensus       131 ~L~~n~~~~~~--~~~~~~~l~~L~~L~L~~n~  161 (433)
                      .+-+|++...-  ...+...+|+|+.||...-.
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            88888763211  11112257788888876544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.00019  Score=67.75  Aligned_cols=114  Identities=18%  Similarity=0.157  Sum_probs=67.9

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCC-cccccCCccccCCCCCcEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNN-RLAGIFPVSLKNCSSLISL  130 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  130 (433)
                      +.+++.|++++|.++ .+|. +  -.+|++|.++++.-...+|..+  .++|++|.+++| .+. .+|.      .|+.|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L  117 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL  117 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence            678889999988777 4452 1  1358889988754444666555  257888888887 444 3443      56777


Q ss_pred             ECcCcccc--ccCChhhhhcCCCccEEEeeCcccc--ccCCccccCCCCcCEEEccCCcCc
Q 042476          131 DIGENDFF--GSIPTWVGERFPRLLILNLRSNKFN--GSLPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       131 ~L~~n~~~--~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                      ++..+...  +.+|       ++|+.|.+.+++-.  ..++..+  -++|++|++++|...
T Consensus       118 ~L~~n~~~~L~~LP-------ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i  169 (426)
T PRK15386        118 EIKGSATDSIKNVP-------NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI  169 (426)
T ss_pred             EeCCCCCcccccCc-------chHhheecccccccccccccccc--CCcccEEEecCCCcc
Confidence            77665431  2222       35667766443211  0111111  147888888877754

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.57  E-value=1.2e-05  Score=81.76  Aligned_cols=134  Identities=22%  Similarity=0.259  Sum_probs=75.6

Q ss_pred             CCccEEEccCCcccccCC-ccccCCCCCCCccEEEcCCCcCcC-cCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCc
Q 042476           26 FEFGLLDLSNNALSGSII-HLICNGDNKSVIISLKLSKNYFSG-DIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL  103 (433)
Q Consensus        26 ~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L  103 (433)
                      .+|++||+++...-.... ..+.  .-+|.|+.|.+.+-.+.. .......++|+|..||+++..++..  ..++++++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig--~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIG--TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHh--hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence            357777777654321111 1111  236777777777655542 2223345677777777777777633  456677777


Q ss_pred             CEEEccCCcccc-cCCccccCCCCCcEEECcCccccccCCh------hhhhcCCCccEEEeeCccccc
Q 042476          104 RSLHLRNNRLAG-IFPVSLKNCSSLISLDIGENDFFGSIPT------WVGERFPRLLILNLRSNKFNG  164 (433)
Q Consensus       104 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~------~~~~~l~~L~~L~L~~n~l~~  164 (433)
                      +.|.+.+=.+.. ..-..+.++++|++||+|..... ..+.      ..+..+|+|+.||.+++.+..
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            777776655442 11123556777777777766542 1111      111246788888888777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.57  E-value=0.00021  Score=56.96  Aligned_cols=118  Identities=21%  Similarity=0.202  Sum_probs=46.0

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      +.+|+.+.+.. .+..+...+|.++++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..+++|+.++
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            45566666553 344444555666666666666553 4433444555655666666654 33333444555566666666


Q ss_pred             CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCc
Q 042476          132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL  176 (433)
Q Consensus       132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  176 (433)
                      +..+ + ..++...+.+. +|+.+.+.. .+......+|.++++|
T Consensus        88 ~~~~-~-~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   88 IPSN-I-TEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ETTT---BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cCcc-c-cEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            6543 2 24444444444 666665544 2222333445444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.00  E-value=0.0004  Score=60.47  Aligned_cols=39  Identities=28%  Similarity=0.475  Sum_probs=17.3

Q ss_pred             CCCCcCEEEccCC--cccccCCccccCCCCCcEEECcCccc
Q 042476           99 TLSSLRSLHLRNN--RLAGIFPVSLKNCSSLISLDIGENDF  137 (433)
Q Consensus        99 ~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~~  137 (433)
                      .|++|++|.++.|  ++.+.++.-...+++|++|++++|++
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            3444555555554  33333333333344555555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.95  E-value=7.5e-06  Score=75.37  Aligned_cols=64  Identities=25%  Similarity=0.244  Sum_probs=27.7

Q ss_pred             CCccCceEeCcCcccc--cCCCcccCCCCCCCEEeCcCCcCCCCC-----CccccCCCCCCeeeCcCCcCc
Q 042476          264 NLEGLQTLNLSHNFFV--GKIPENIGNMRSIESLDFSTNRLFGRI-----PQSMSSLSFLNHLNLSENDLS  327 (433)
Q Consensus       264 ~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~  327 (433)
                      +++.|+.+++.++...  +.+...-.+++.|+.+.++.|.+....     ...-.....|+.+.+++++..
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI  414 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence            3455555555554421  112222234455555555555432111     111233445555555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.83  E-value=0.00062  Score=59.33  Aligned_cols=106  Identities=22%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             CCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCC--cCcccCCcccCCCCCcCEEEccCCcccccCCcc---ccCCC
Q 042476           51 NKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDN--YFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS---LKNCS  125 (433)
Q Consensus        51 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~  125 (433)
                      .+..|+.+++.+..++..  ..|..+++|+.|.++.|  ++.+.++.....+++|++|++++|++..  ++.   +..+.
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE  116 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence            366777777766665522  23456788899999998  6665555555666899999999998873  222   45677


Q ss_pred             CCcEEECcCcccccc--CChhhhhcCCCccEEEeeCc
Q 042476          126 SLISLDIGENDFFGS--IPTWVGERFPRLLILNLRSN  160 (433)
Q Consensus       126 ~L~~L~L~~n~~~~~--~~~~~~~~l~~L~~L~L~~n  160 (433)
                      +|..|++..|..+..  -...++.-+++|++|+-...
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            788888888865331  12344556788888875443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.47  E-value=0.00011  Score=64.35  Aligned_cols=60  Identities=32%  Similarity=0.356  Sum_probs=25.9

Q ss_pred             CCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCC-ccccCCCCCcEEECcCcc
Q 042476           75 NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP-VSLKNCSSLISLDIGEND  136 (433)
Q Consensus        75 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~  136 (433)
                      .|+.|++|.|+-|+|+..-  .|..+++|+.|+|..|.|.+... .-+.++++|+.|.|..|+
T Consensus        39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence            4455555555555544221  23344455555555554442210 113344444444444444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.43  E-value=0.00012  Score=67.69  Aligned_cols=258  Identities=14%  Similarity=0.086  Sum_probs=136.2

Q ss_pred             CCCccEEEccCCc-ccccCCccccCCCCCCCccEEEcCCC-cCcCcCCc-ccCCCCCCCEEEccCCcC-cccCC-cccCC
Q 042476           25 PFEFGLLDLSNNA-LSGSIIHLICNGDNKSVIISLKLSKN-YFSGDIPD-CWMNWPHLQVLNLDDNYF-TGNLP-ISIGT   99 (433)
Q Consensus        25 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~i-~~~~p-~~~~~   99 (433)
                      ++++++|.+.++. +++..-..+.  ..+++|+++++..| .++...-. .-..+++|++|+++.+.- .+.-- ..+.+
T Consensus       163 CpnIehL~l~gc~~iTd~s~~sla--~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  163 CPNIEHLALYGCKKITDSSLLSLA--RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             CCchhhhhhhcceeccHHHHHHHH--HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            7899999888875 3332211221  55899999999985 34432222 234688999999998753 33211 23456


Q ss_pred             CCCcCEEEccCCccccc--CCccccCCCCCcEEECcCcc-ccccCChhhhhcCCCccEEEeeCcccccc-CCccc-cCCC
Q 042476          100 LSSLRSLHLRNNRLAGI--FPVSLKNCSSLISLDIGEND-FFGSIPTWVGERFPRLLILNLRSNKFNGS-LPVQL-CHLT  174 (433)
Q Consensus       100 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l-~~l~  174 (433)
                      ...++.+.+.||.=.+.  +-..-+.+..+.++++..+. +++.--..+...+..|+.|+.+++...+. .-.++ .+.+
T Consensus       241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~  320 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH  320 (483)
T ss_pred             chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence            67777777776531110  00111234455566654443 22221122223467888888887754311 11122 4568


Q ss_pred             CcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcc
Q 042476          175 FLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNF  254 (433)
Q Consensus       175 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~  254 (433)
                      +|+.|.++.++.-+..  .|..                                        ....++.|+.+++..+..
T Consensus       321 ~L~~l~l~~c~~fsd~--~ft~----------------------------------------l~rn~~~Le~l~~e~~~~  358 (483)
T KOG4341|consen  321 NLQVLELSGCQQFSDR--GFTM----------------------------------------LGRNCPHLERLDLEECGL  358 (483)
T ss_pred             ceEEEeccccchhhhh--hhhh----------------------------------------hhcCChhhhhhcccccce
Confidence            8899888877631111  0100                                        011133344444444432


Q ss_pred             c--ccCCccccCCccCceEeCcCccc-ccCC----CcccCCCCCCCEEeCcCCcCCC-CCCccccCCCCCCeeeCcCCcC
Q 042476          255 S--GEIPMQLTNLEGLQTLNLSHNFF-VGKI----PENIGNMRSIESLDFSTNRLFG-RIPQSMSSLSFLNHLNLSENDL  326 (433)
Q Consensus       255 ~--~~~~~~~~~l~~L~~L~Ls~n~l-~~~~----~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l  326 (433)
                      .  +.+...-.+++.|+.|.|+++.. +++.    ...-..+..|+.+.++++..+. ..-..+..+++|+.+++-+++-
T Consensus       359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            1  11222223566677777776553 2221    1112345667777777776532 2334456677777777776653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.00012  Score=64.15  Aligned_cols=99  Identities=26%  Similarity=0.243  Sum_probs=76.8

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCc--ccCCCCC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPI--SIGTLSS  102 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~--~~~~l~~  102 (433)
                      +.+++.|+..++.++++.   +|  ..++.|++|.|+-|.|+..  ..|..++.|++|+|..|.|.. +.+  -+.++++
T Consensus        18 l~~vkKLNcwg~~L~DIs---ic--~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS---IC--EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccHHH---HH--HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCch
Confidence            456888999999987642   22  4599999999999999854  346789999999999999883 332  3688999


Q ss_pred             cCEEEccCCcccccCCc-----cccCCCCCcEEE
Q 042476          103 LRSLHLRNNRLAGIFPV-----SLKNCSSLISLD  131 (433)
Q Consensus       103 L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~  131 (433)
                      |+.|-|..|.-.+.-+.     .++-+|+|++||
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999999887655433     356788888887

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.31  E-value=6.4e-06  Score=80.22  Aligned_cols=185  Identities=24%  Similarity=0.257  Sum_probs=117.8

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCC-CC-CCCccEEEcCCCcCcCc----CCcccCC
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG-DN-KSVIISLKLSKNYFSGD----IPDCWMN   75 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~-~~~L~~L~L~~n~l~~~----~~~~~~~   75 (433)
                      |+|.+|.+.+...+.....++. .++|+.|++++|.+.+.....+++. .. -+.++.|++..|.++..    +.+.+..
T Consensus        92 L~L~~~~l~~~~~~~l~~~l~t-~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~  170 (478)
T KOG4308|consen   92 LSLANNRLGDRGAEELAQALKT-LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEK  170 (478)
T ss_pred             hhhhhCccccchHHHHHHHhcc-cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhc
Confidence            5667777776644333333332 5679999999999886655555554 22 26778888888877643    4455556


Q ss_pred             CCCCCEEEccCCcCcc----cCCcccC----CCCCcCEEEccCCccccc----CCccccCCCC-CcEEECcCccccccCC
Q 042476           76 WPHLQVLNLDDNYFTG----NLPISIG----TLSSLRSLHLRNNRLAGI----FPVSLKNCSS-LISLDIGENDFFGSIP  142 (433)
Q Consensus        76 l~~L~~L~L~~n~i~~----~~p~~~~----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~-L~~L~L~~n~~~~~~~  142 (433)
                      ...++.++++.|.+..    .++..+.    ...++++|.+.+|.++..    +...+...+. +..+++..|.+.+..-
T Consensus       171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~  250 (478)
T KOG4308|consen  171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV  250 (478)
T ss_pred             ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence            7788889999888742    1233333    467889999998887632    1222444555 6678888887743311


Q ss_pred             hhhhh---cC-CCccEEEeeCcccccc----CCccccCCCCcCEEEccCCcCc
Q 042476          143 TWVGE---RF-PRLLILNLRSNKFNGS----LPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       143 ~~~~~---~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                      .....   .+ ..+++++++.|.++..    +...+..++.++++.+++|.+.
T Consensus       251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            11111   23 4668888888888743    2334556678888888888775

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.13  E-value=0.00062  Score=67.60  Aligned_cols=111  Identities=23%  Similarity=0.172  Sum_probs=48.9

Q ss_pred             CCCCCEEEccCCcCccc--CCcccCCCCCcCEEEccCC-cccccC----CccccCCCCCcEEECcCcc-ccccCChhhhh
Q 042476           76 WPHLQVLNLDDNYFTGN--LPISIGTLSSLRSLHLRNN-RLAGIF----PVSLKNCSSLISLDIGEND-FFGSIPTWVGE  147 (433)
Q Consensus        76 l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~  147 (433)
                      ++.|+.+.+.++.-...  .-......++|+.|+++++ ......    ......+++|+.|+++.+. +++..-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555554422211  1122334555666665542 111011    1122344556666666554 33333333333


Q ss_pred             cCCCccEEEeeCcc-cccc-CCccccCCCCcCEEEccCCcC
Q 042476          148 RFPRLLILNLRSNK-FNGS-LPVQLCHLTFLRILDVAHNNL  186 (433)
Q Consensus       148 ~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~~  186 (433)
                      .+++|++|.+.+|. ++.. +-.....+++|++|+++.+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            45666666655554 3311 111223455566666665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.52  E-value=0.00085  Score=66.61  Aligned_cols=110  Identities=14%  Similarity=0.094  Sum_probs=45.7

Q ss_pred             CCCcCEEEccCCccccc--CCccccCCCCCcEEECcCc-cccccC---ChhhhhcCCCccEEEeeCcc-ccccCCcccc-
Q 042476          100 LSSLRSLHLRNNRLAGI--FPVSLKNCSSLISLDIGEN-DFFGSI---PTWVGERFPRLLILNLRSNK-FNGSLPVQLC-  171 (433)
Q Consensus       100 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n-~~~~~~---~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~-  171 (433)
                      .+.|+.+.+.++.-...  .......++.|+.|+++++ ......   .......+.+|+.|+++++. ++...-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555555432211  1123345556666666542 110011   11122344556666666555 3211111111 


Q ss_pred             CCCCcCEEEccCCc-Cccc-CCCCcccccccccccccccc
Q 042476          172 HLTFLRILDVAHNN-LSGT-IPRCINNFTAMATINSSNQK  209 (433)
Q Consensus       172 ~l~~L~~L~l~~n~-~~~~-~p~~~~~l~~L~~L~l~~~~  209 (433)
                      .+++|+.|.+.++. +++. +-.....++.|++|+++.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            24556666555444 2211 11222344555555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.98  E-value=0.011  Score=30.68  Aligned_cols=11  Identities=36%  Similarity=0.555  Sum_probs=4.1

Q ss_pred             CEEEccCCcCc
Q 042476           80 QVLNLDDNYFT   90 (433)
Q Consensus        80 ~~L~L~~n~i~   90 (433)
                      ++|+|++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.18  E-value=0.023  Score=47.85  Aligned_cols=81  Identities=22%  Similarity=0.261  Sum_probs=57.6

Q ss_pred             eeEEEcccCcccccCCccccCCccCceEeCcCccc-ccCCCcccC-CCCCCCEEeCcCC-cCCCCCCccccCCCCCCeee
Q 042476          244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFF-VGKIPENIG-NMRSIESLDFSTN-RLFGRIPQSMSSLSFLNHLN  320 (433)
Q Consensus       244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~  320 (433)
                      ++.++-+++.+..+-...+..++.++.|.+.++.- .+.--+-++ -.++|+.|+++.| +||+.--..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            78888899888877667778888888888888752 211111111 3478999999987 67765556677788888888


Q ss_pred             CcCC
Q 042476          321 LSEN  324 (433)
Q Consensus       321 L~~n  324 (433)
                      +.+=
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            7643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.84  E-value=0.17  Score=24.30  Aligned_cols=13  Identities=46%  Similarity=0.703  Sum_probs=5.0

Q ss_pred             CcCEEEccCCcCc
Q 042476          175 FLRILDVAHNNLS  187 (433)
Q Consensus       175 ~L~~L~l~~n~~~  187 (433)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4455555555543

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.31  E-value=0.31  Score=26.20  Aligned_cols=12  Identities=58%  Similarity=0.869  Sum_probs=4.8

Q ss_pred             cCEEEccCCccc
Q 042476          103 LRSLHLRNNRLA  114 (433)
Q Consensus       103 L~~L~L~~n~l~  114 (433)
                      |++|++++|.+.
T Consensus         4 L~~L~L~~N~l~   15 (26)
T smart00369        4 LRELDLSNNQLS   15 (26)
T ss_pred             CCEEECCCCcCC
Confidence            334444444333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.31  E-value=0.31  Score=26.20  Aligned_cols=12  Identities=58%  Similarity=0.869  Sum_probs=4.8

Q ss_pred             cCEEEccCCccc
Q 042476          103 LRSLHLRNNRLA  114 (433)
Q Consensus       103 L~~L~L~~n~l~  114 (433)
                      |++|++++|.+.
T Consensus         4 L~~L~L~~N~l~   15 (26)
T smart00370        4 LRELDLSNNQLS   15 (26)
T ss_pred             CCEEECCCCcCC
Confidence            334444444333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.95  E-value=0.35  Score=25.99  Aligned_cols=14  Identities=36%  Similarity=0.555  Sum_probs=7.0

Q ss_pred             CCCCEEeCcCCcCC
Q 042476          290 RSIESLDFSTNRLF  303 (433)
Q Consensus       290 ~~L~~L~Ls~n~l~  303 (433)
                      ++|+.|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.95  E-value=0.35  Score=25.99  Aligned_cols=14  Identities=36%  Similarity=0.555  Sum_probs=7.0

Q ss_pred             CCCCEEeCcCCcCC
Q 042476          290 RSIESLDFSTNRLF  303 (433)
Q Consensus       290 ~~L~~L~Ls~n~l~  303 (433)
                      ++|+.|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.48  E-value=0.0025  Score=62.36  Aligned_cols=162  Identities=20%  Similarity=0.176  Sum_probs=106.9

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCcCcC----cCCcccC--
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNYFSG----DIPDCWM--   74 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~----~~~~~~~--   74 (433)
                      ||+++|.+.+..-......++..-..+++|++..+.+++..-..+.+. .....++.++++.|.+..    .++..+.  
T Consensus       120 L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~  199 (478)
T KOG4308|consen  120 LDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESA  199 (478)
T ss_pred             hhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhh
Confidence            688889888432222223334323578889999998887654444333 347889999999997741    2233333  


Q ss_pred             --CCCCCCEEEccCCcCccc----CCcccCCCCC-cCEEEccCCccccc----CCccccCC-CCCcEEECcCccccccCC
Q 042476           75 --NWPHLQVLNLDDNYFTGN----LPISIGTLSS-LRSLHLRNNRLAGI----FPVSLKNC-SSLISLDIGENDFFGSIP  142 (433)
Q Consensus        75 --~l~~L~~L~L~~n~i~~~----~p~~~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~~~~~~~  142 (433)
                        ...++++|.+++|.++..    ....+...+. +..|++..|.+...    +...+..+ ..+++++++.|.+...-.
T Consensus       200 ~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~  279 (478)
T KOG4308|consen  200 ASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGV  279 (478)
T ss_pred             hcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccch
Confidence              467899999999988732    2233455555 77799999987743    22234444 678999999999865444


Q ss_pred             hhhh---hcCCCccEEEeeCcccc
Q 042476          143 TWVG---ERFPRLLILNLRSNKFN  163 (433)
Q Consensus       143 ~~~~---~~l~~L~~L~L~~n~l~  163 (433)
                      ....   ..++.++++.++.|.+.
T Consensus       280 ~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  280 RDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHhhhHHHHHhhcccCccc
Confidence            3333   25668999999999876

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=87.42  E-value=0.25  Score=29.65  Aligned_cols=26  Identities=12%  Similarity=-0.050  Sum_probs=13.0

Q ss_pred             hhhhhhhhhhhhhhHhhhhheecccc
Q 042476          385 LYASMALGFVVGFWCFIGPLLVNRRW  410 (433)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (433)
                      +.+++++.++++++++.+.+++|+|+
T Consensus        13 Ia~~VvVPV~vI~~vl~~~l~~~~rR   38 (40)
T PF08693_consen   13 IAVGVVVPVGVIIIVLGAFLFFWYRR   38 (40)
T ss_pred             EEEEEEechHHHHHHHHHHhheEEec
Confidence            33445555555555554555544444

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.09  E-value=0.14  Score=27.06  Aligned_cols=18  Identities=33%  Similarity=0.346  Sum_probs=10.6

Q ss_pred             CCccEEEccCCcccccCC
Q 042476           26 FEFGLLDLSNNALSGSII   43 (433)
Q Consensus        26 ~~L~~L~l~~n~l~~~~~   43 (433)
                      ++|++|++++|.+++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            467777777777765543

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.66  E-value=0.025  Score=48.69  Aligned_cols=84  Identities=18%  Similarity=0.218  Sum_probs=66.7

Q ss_pred             ccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeee
Q 042476          241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLN  320 (433)
Q Consensus       241 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  320 (433)
                      +...+.||++.|.+. .+...|+.++.|..|+++.|++. ..|+.++....+..+++.+|..+ ..|.++...++++.++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            455778888888775 33445666778888999988886 67888888888888888888875 7788888889999999


Q ss_pred             CcCCcCc
Q 042476          321 LSENDLS  327 (433)
Q Consensus       321 L~~n~l~  327 (433)
                      +-.|.++
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9888875

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=86.50  E-value=0.29  Score=37.92  Aligned_cols=27  Identities=15%  Similarity=0.092  Sum_probs=16.0

Q ss_pred             hhhhhhhhhhhhhhHhhhhheeccccc
Q 042476          385 LYASMALGFVVGFWCFIGPLLVNRRWR  411 (433)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (433)
                      .+.++++|++++++.++++++|+.||+
T Consensus        65 ~i~~Ii~gv~aGvIg~Illi~y~irR~   91 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGIILLISYCIRRL   91 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            556666777776666665555544443

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.34  E-value=0.014  Score=50.28  Aligned_cols=83  Identities=18%  Similarity=0.143  Sum_probs=45.4

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      +...+.||++.|++. ..-..|+-++.+..|+++.|.+. -.|..++.+..++.+++..|..+ ..|.+++..+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            445555666555544 22333444555555666655555 45555555555555555555544 4555566666666666


Q ss_pred             CcCccc
Q 042476          132 IGENDF  137 (433)
Q Consensus       132 L~~n~~  137 (433)
                      +.++.+
T Consensus       118 ~k~~~~  123 (326)
T KOG0473|consen  118 QKKTEF  123 (326)
T ss_pred             hccCcc
Confidence            655543

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=83.11  E-value=0.39  Score=38.45  Aligned_cols=23  Identities=13%  Similarity=0.001  Sum_probs=12.8

Q ss_pred             hhhhhhhhhhhhhhHhhhhheec
Q 042476          385 LYASMALGFVVGFWCFIGPLLVN  407 (433)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~  407 (433)
                      +++++++|+.+.+++++++++|+
T Consensus        50 IVIGvVVGVGg~ill~il~lvf~   72 (154)
T PF04478_consen   50 IVIGVVVGVGGPILLGILALVFI   72 (154)
T ss_pred             EEEEEEecccHHHHHHHHHhhee
Confidence            56666666655555554444443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=81.05  E-value=4.4  Score=39.05  Aligned_cols=23  Identities=17%  Similarity=0.039  Sum_probs=15.6

Q ss_pred             CCCccEEEccCCcccccCCcccc
Q 042476           25 PFEFGLLDLSNNALSGSIIHLIC   47 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~   47 (433)
                      .+.++++|++.|.+.+..|-.+.
T Consensus       164 npr~r~~dls~npi~dkvpihl~  186 (553)
T KOG4242|consen  164 NPRARQHDLSPNPIGDKVPIHLP  186 (553)
T ss_pred             cchhhhhccCCCcccccCCcccc
Confidence            44677888888877766665553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	433
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-30
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-30
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-11
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		3e-05

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 173/417 (41%), Gaps = 67/417 (16%)
Query: 2   LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
           L+LS N+  G +P      L         LDLS+N  SG I+  +C  + K+ +  L L 
Sbjct: 345 LDLSFNEFSGELP----ESLTNLSASLLTLDLSSNNFSGPILPNLCQ-NPKNTLQELYLQ 399
Query: 62  KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT---------------------- 99
            N F+G IP    N   L  L+L  NY +G +P S+G+                      
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 100 --XXXXXXXXXXXXXXAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNL 157
                            G  P  L NC++L  + +  N   G IP W+G R   L IL L
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKL 518
Query: 158 RSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVT 217
            +N F+G++P +L     L  LD+  N  +GTIP  +  F     I ++      Y ++ 
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKRYVYIK 576
Query: 218 RGNIVFEDASVVTKGLLVEYNSI----LNLVRS--------------------------- 246
              +  E       G L+E+  I    LN + +                           
Sbjct: 577 NDGMKKE---CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 247 IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRI 306
           +D+S N  SG IP ++ ++  L  LNL HN   G IP+ +G++R +  LD S+N+L GRI
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 307 PQXXXXXXXXXXXXXXXXDLSGQIPSSTQLQSFGASCFSGN-DLCGAPLPDCTEKNT 362
           PQ                +LSG IP   Q ++F  + F  N  LCG PLP C   N 
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 750

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 14/195 (7%)
Query: 122 KNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNK--FNGSLPVQLCHLTFLRI 178
           K  +SL SLD+  N   G + T         L  LN+ SN   F G +   L  L  L +
Sbjct: 94  KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEV 152
Query: 179 LDVAHNNLSGT------IPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKG 232
           LD++ N++SG       +         +A   S N+ +         N+ F D S     
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLAI--SGNKISGDVDVSRCVNLEFLDVSSNNFS 210
Query: 233 LLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI 292
             + +    + ++ +DIS N  SG+    ++    L+ LN+S N FVG IP     ++S+
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 268
Query: 293 ESLDFSTNRLFGRIP 307
           + L  + N+  G IP
Sbjct: 269 QYLSLAENKFTGEIP 283

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 173/417 (41%), Gaps = 67/417 (16%)
Query: 2   LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
           L+LS N+  G +P      L         LDLS+N  SG I+  +C  + K+ +  L L 
Sbjct: 348 LDLSFNEFSGELP----ESLTNLSASLLTLDLSSNNFSGPILPNLCQ-NPKNTLQELYLQ 402
Query: 62  KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT---------------------- 99
            N F+G IP    N   L  L+L  NY +G +P S+G+                      
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 100 --XXXXXXXXXXXXXXAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNL 157
                            G  P  L NC++L  + +  N   G IP W+G R   L IL L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKL 521
Query: 158 RSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVT 217
            +N F+G++P +L     L  LD+  N  +GTIP  +  F     I ++      Y ++ 
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKRYVYIK 579
Query: 218 RGNIVFEDASVVTKGLLVEYNSI----LNLVRS--------------------------- 246
              +  E       G L+E+  I    LN + +                           
Sbjct: 580 NDGMKKE---CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 247 IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRI 306
           +D+S N  SG IP ++ ++  L  LNL HN   G IP+ +G++R +  LD S+N+L GRI
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 307 PQXXXXXXXXXXXXXXXXDLSGQIPSSTQLQSFGASCFSGN-DLCGAPLPDCTEKNT 362
           PQ                +LSG IP   Q ++F  + F  N  LCG PLP C   N 
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 122 KNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNK--FNGSLPVQLCHLTFLRI 178
           K  +SL SLD+  N   G + T         L  LN+ SN   F G +   L  L  L +
Sbjct: 97  KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEV 155
Query: 179 LDVAHNNLSGT------IPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKG 232
           LD++ N++SG       +         +A   S N+ +         N+ F D S     
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAI--SGNKISGDVDVSRCVNLEFLDVSSNNFS 213
Query: 233 LLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI 292
             + +    + ++ +DIS N  SG+    ++    L+ LN+S N FVG IP     ++S+
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 271
Query: 293 ESLDFSTNRLFGRIPQ 308
           + L  + N+  G IP 
Sbjct: 272 QYLSLAENKFTGEIPD 287

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 137/328 (41%), Gaps = 65/328 (19%)
Query: 43  IHLICNGDNKSVIIS------LKLSKNYFSGDIPDCWMNWPHLQVLNLDD-NYFTGNLPI 95
           + ++C+ D ++  ++      L L K Y    IP    N P+L  L +   N   G +P 
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPY---PIPSSLANLPYLNFLYIGGINNLVGPIPP 95
Query: 96  SIGTXXXXXXXXXXXXXXAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLIL 155
           +I                +G  P  L    +L++LD   N   G++P  +    P L+ +
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGI 154
Query: 156 NLRSNKFNGSLPVQLCHLTFL-RILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYY 214
               N+ +G++P      + L   + ++ N L+G IP    N             N  + 
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------NLAFV 202
Query: 215 FVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFS---GEIPMQLTNLEGLQTL 271
            ++R N++  DASV+       + S  N  + I ++KN+ +   G++ +   NL GL   
Sbjct: 203 DLSR-NMLEGDASVL-------FGSDKN-TQKIHLAKNSLAFDLGKVGLS-KNLNGL--- 249
Query: 272 NLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQXXXXXXXXXXXXXXXXDLSGQIP 331
           +L +N   G +P+ +  ++ + SL+ S N L G IPQ                       
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ----------------------- 286
Query: 332 SSTQLQSFGASCFSGND-LCGAPLPDCT 358
               LQ F  S ++ N  LCG+PLP CT
Sbjct: 287 -GGNLQRFDVSAYANNKCLCGSPLPACT 313

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 23/185 (12%)
Query: 126 SLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNN 185
           S+ SL++ E+ F   I +   + F +L  L+L +    G LP  +  L  L+ L ++   
Sbjct: 252 SVESLNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLS--- 306
Query: 186 LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVR 245
                   +N+F  +  I+++N  +  + ++ RGN+      V   G L +  ++    +
Sbjct: 307 --------VNHFDQLCQISAANFPSLTHLYI-RGNVKKLHLGV---GCLEKLGNL----Q 350
Query: 246 SIDISKNNFSGE--IPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF 303
           ++D+S N+        +QL NL  LQTLNLSHN  +G   +       +E LD +  RL 
Sbjct: 351 TLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLH 410
Query: 304 GRIPQ 308
              PQ
Sbjct: 411 INAPQ 415

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	433
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-99
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-61
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-60
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-77
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  311 bits (798), Expect = 9e-99
 Identities = 108/384 (28%), Positives = 163/384 (42%), Gaps = 34/384 (8%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L+LS+N   G I     +           L L NN  +G I   + N      ++SL L
Sbjct: 372 TLDLSSNNFSGPILPNLCQ---NPKNTLQELYLQNNGFTGKIPPTLSNCSE---LVSLHL 425

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           S NY SG IP    +   L+ L L  N   G +P  +  + +L +L L  N L G  P  
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
           L NC++L  + +  N   G IP W+G R   L IL L +N F+G++P +L     L  LD
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

Query: 181 VAHNNLSGTIPRCINNFTAMATIN--SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYN 238
           +  N  +GTIP  +   +     N  +  +   I     +         +  +G+  E  
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604

Query: 239 SILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFS 298
           + L+     +I+   + G       N   +  L++S+N   G IP+ IG+M  +  L+  
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664

Query: 299 TNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS------------------------T 334
            N + G IP  +  L  LN L+LS N L G+IP +                         
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724

Query: 335 QLQSFGASCFSGND-LCGAPLPDC 357
           Q ++F  + F  N  LCG PLP C
Sbjct: 725 QFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  229 bits (587), Expect = 4e-68
 Identities = 101/345 (29%), Positives = 161/345 (46%), Gaps = 32/345 (9%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            LN+S+NQ  G IP    + L Y       L L+ N  +G I   +        +  L L
Sbjct: 251 LLNISSNQFVGPIPPLPLKSLQY-------LSLAENKFTGEIPDFLSG--ACDTLTGLDL 301

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPI-SIGTLSSLRSLHLRNNRLAGIFPV 119
           S N+F G +P  + +   L+ L L  N F+G LP+ ++  +  L+ L L  N  +G  P 
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

Query: 120 SLKNCS-SLISLDIGENDFFGSIPTWVGE-RFPRLLILNLRSNKFNGSLPVQLCHLTFLR 177
           SL N S SL++LD+  N+F G I   + +     L  L L++N F G +P  L + + L 
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421

Query: 178 ILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEY 237
            L ++ N LSGTIP  + + + +  +      N +      G I              E 
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWL--NMLE-----GEI------------PQEL 462

Query: 238 NSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDF 297
             +  L  ++ +  N+ +GEIP  L+N   L  ++LS+N   G+IP+ IG + ++  L  
Sbjct: 463 MYVKTL-ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 298 STNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGAS 342
           S N   G IP  +     L  L+L+ N  +G IP++   QS   +
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  220 bits (564), Expect = 8e-65
 Identities = 104/337 (30%), Positives = 160/337 (47%), Gaps = 37/337 (10%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L +S N+I G +       L +       LD+S+N  S  I  L     + S +  L +
Sbjct: 182 HLAISGNKISGDVDVSRCVNLEF-------LDVSSNNFSTGIPFL----GDCSALQHLDI 230

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           S N  SGD          L++LN+  N F G +P     L SL+ L L  N+  G  P  
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDF 288

Query: 121 LK-NCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ-LCHLTFLRI 178
           L   C +L  LD+  N F+G++P + G     L  L L SN F+G LP+  L  +  L++
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKV 347

Query: 179 LDVAHNNLSGTIPRCINNFTA-MATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVE 236
           LD++ N  SG +P  + N +A + T++ SSN  +        G I+              
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS--------GPILPNLC---------- 389

Query: 237 YNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLD 296
             +  N ++ + +  N F+G+IP  L+N   L +L+LS N+  G IP ++G++  +  L 
Sbjct: 390 -QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 297 FSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS 333
              N L G IPQ +  +  L  L L  NDL+G+IPS 
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  212 bits (541), Expect = 1e-61
 Identities = 99/371 (26%), Positives = 158/371 (42%), Gaps = 77/371 (20%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALSGSIIHLICNGDNKSVI 55
            LN+S+N +                    L     LDLS N++SG+ +      D    +
Sbjct: 130 FLNVSSNTLDFPGK---------VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 56  ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAG 115
             L +S N  SGD+        +L+ L++  N F+  +P  +G  S+L+ L +  N+L+G
Sbjct: 181 KHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG 237

Query: 116 IFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCH-LT 174
            F  ++  C+ L  L+I  N F G IP         L  L+L  NKF G +P  L     
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACD 294

Query: 175 FLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLL 234
            L  LD++ N+  G +P    + + +                                  
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLL---------------------------------- 320

Query: 235 VEYNSILNLVRSIDISKNNFSGEIPMQ-LTNLEGLQTLNLSHNFFVGKIPENIGNMR-SI 292
                      S+ +S NNFSGE+PM  L  + GL+ L+LS N F G++PE++ N+  S+
Sbjct: 321 ----------ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370

Query: 293 ESLDFSTNRLFGRIPQSM--SSLSFLNHLNLSENDLSGQIPSS----TQLQSFGASCFSG 346
            +LD S+N   G I  ++  +  + L  L L  N  +G+IP +    ++L S      S 
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL---HLSF 427

Query: 347 NDLCGAPLPDC 357
           N L G  +P  
Sbjct: 428 NYLSG-TIPSS 437

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  207 bits (528), Expect = 9e-60
 Identities = 91/340 (26%), Positives = 152/340 (44%), Gaps = 42/340 (12%)

Query: 2   LNLSNNQIYGVIPYFDH-RPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           L LSN+ I G +  F     L         LDLS N+LSG +  L   G + S +  L +
Sbjct: 82  LFLSNSHINGSVSGFKCSASLTS-------LDLSRNSLSGPVTTLTSLG-SCSGLKFLNV 133

Query: 61  SKNYFSGDIPDCW-MNWPHLQVLNLDDNYFTGNLPISI---GTLSSLRSLHLRNNRLAGI 116
           S N           +    L+VL+L  N  +G   +          L+ L +  N+++G 
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193

Query: 117 FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL 176
             VS   C +L  LD+  N+F   IP ++G     L  L++  NK +G     +   T L
Sbjct: 194 VDVS--RCVNLEFLDVSSNNFSTGIP-FLG-DCSALQHLDISGNKLSGDFSRAISTCTEL 249

Query: 177 RILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLV 235
           ++L+++ N   G IP       ++  ++ + N+          G I              
Sbjct: 250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT--------GEI------------PD 287

Query: 236 EYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIP-ENIGNMRSIES 294
             +   + +  +D+S N+F G +P    +   L++L LS N F G++P + +  MR ++ 
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347

Query: 295 LDFSTNRLFGRIPQSMSSLSF-LNHLNLSENDLSGQIPSS 333
           LD S N   G +P+S+++LS  L  L+LS N+ SG I  +
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  194 bits (495), Expect = 3e-55
 Identities = 92/341 (26%), Positives = 138/341 (40%), Gaps = 63/341 (18%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            ++LS+  +           L     E   L LSN+ ++GS+    C+    + + SL L
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLES--LFLSNSHINGSVSGFKCS----ASLTSLDL 107

Query: 61  SKNYFSGDIPDCWM--NWPHLQVLNLDDNYFTGNLPISIGT-LSSLRSLHLRNNRLAGIF 117
           S+N  SG +       +   L+ LN+  N       +S G  L+SL  L L  N ++G  
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 118 PVSLK---NCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLT 174
            V       C  L  L I  N   G +      R   L  L++ SN F+  +P  L   +
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVDVS---RCVNLEFLDVSSNNFSTGIP-FLGDCS 223

Query: 175 FLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLL 234
            L+ LD++ N LSG   R I+  T                                    
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCT------------------------------------ 247

Query: 235 VEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSIE 293
                   L + ++IS N F G IP     L+ LQ L+L+ N F G+IP+ + G   ++ 
Sbjct: 248 -------EL-KLLNISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297

Query: 294 SLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSST 334
            LD S N  +G +P    S S L  L LS N+ SG++P  T
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  158 bits (402), Expect = 2e-42
 Identities = 72/289 (24%), Positives = 112/289 (38%), Gaps = 46/289 (15%)

Query: 78  HLQVLNLDDNYFT---GNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGE 134
            +  ++L           +  S+ +L+ L SL L N+ + G      K  +SL SLD+  
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSR 109

Query: 135 NDFFGSIPTWVG-ERFPRLLILNLRSNKFNGSLPVQ-LCHLTFLRILDVAHNNLSGTIPR 192
           N   G + T         L  LN+ SN  +    V     L  L +LD++ N++SG    
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 193 CI---NNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLV--RSI 247
                +    +  +  S   N I      G++                  +   V    +
Sbjct: 170 GWVLSDGCGELKHLAISG--NKIS-----GDV-----------------DVSRCVNLEFL 205

Query: 248 DISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIP 307
           D+S NNFS  IP  L +   LQ L++S N   G     I     ++ L+ S+N+  G IP
Sbjct: 206 DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

Query: 308 QSMSSLSFLNHLNLSENDLSGQIPSS-----TQLQSFGASCFSGNDLCG 351
                L  L +L+L+EN  +G+IP         L        SGN   G
Sbjct: 265 P--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD---LSGNHFYG 308

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.3 bits (212), Expect = 6e-18
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 35/192 (18%)

Query: 171 CHLTFLRILDVAHNNLS---GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDAS 227
           C    +  +D++   L+     +   + + T + ++  SN  + I               
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN--SHIN-------------- 90

Query: 228 VVTKGLLVEYNSILNLVRSIDISKNNFSGEIP--MQLTNLEGLQTLNLSHNFFVGKIP-E 284
               G +  +    +L  S+D+S+N+ SG +     L +  GL+ LN+S N         
Sbjct: 91  ----GSVSGFKCSASL-TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145

Query: 285 NIGNMRSIESLDFSTNRLFGRIPQSM---SSLSFLNHLNLSENDLSGQIPSS--TQLQSF 339
               + S+E LD S N + G              L HL +S N +SG +  S    L+  
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205

Query: 340 GASCFSGNDLCG 351
                S N+   
Sbjct: 206 D---VSSNNFST 214

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 288 NMRSIESLDFSTNRL---FGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCF 344
               + S+D S+  L   F  +  S+ SL+ L  L LS + ++G +       S  +   
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 345 SGNDLCGAPLPDCTE 359
           S N L G P+   T 
Sbjct: 108 SRNSLSG-PVTTLTS 121

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  242 bits (620), Expect = 1e-77
 Identities = 84/334 (25%), Positives = 143/334 (42%), Gaps = 57/334 (17%)

Query: 31  LDLSNNALSGSIIHLICNGD-NKSVIISLKLSKNYFSG--DIPDCWMNWPHLQVLNL-DD 86
            D  N    G +    C+ D     + +L LS         IP    N P+L  L +   
Sbjct: 31  TDCCNRTWLGVL----CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86

Query: 87  NYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVG 146
           N   G +P +I  L+ L  L++ +  ++G  P  L    +L++LD   N   G++P  + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

Query: 147 ERFPRLLILNLRSNKFNGSLPVQLCHLTFL-RILDVAHNNLSGTIPRCINNFTAMATINS 205
              P L+ +    N+ +G++P      + L   + ++ N L+G IP    N         
Sbjct: 147 -SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--------- 196

Query: 206 SNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL 265
                                              LNL   +D+S+N   G+  +   + 
Sbjct: 197 -----------------------------------LNLAF-VDLSRNMLEGDASVLFGSD 220

Query: 266 EGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEND 325
           +  Q ++L+ N     + + +G  +++  LD   NR++G +PQ ++ L FL+ LN+S N+
Sbjct: 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 326 LSGQIPSSTQLQSFGASCFSGND-LCGAPLPDCT 358
           L G+IP    LQ F  S ++ N  LCG+PLP CT
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (326), Expect = 3e-34
 Identities = 54/225 (24%), Positives = 85/225 (37%), Gaps = 53/225 (23%)

Query: 117 FPVSLKNCSSLIS----LDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGS--LPVQL 170
               L N ++L S     D     + G +      +  R+  L+L          +P  L
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 171 CHLTFLRILDVAH-NNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVV 229
            +L +L  L +   NNL G IP  I   T                               
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLT------------------------------- 101

Query: 230 TKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNM 289
                        L   + I+  N SG IP  L+ ++ L TL+ S+N   G +P +I ++
Sbjct: 102 ------------QL-HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 290 RSIESLDFSTNRLFGRIPQSMSSLSFL-NHLNLSENDLSGQIPSS 333
            ++  + F  NR+ G IP S  S S L   + +S N L+G+IP +
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  118 bits (299), Expect = 1e-30
 Identities = 45/192 (23%), Positives = 72/192 (37%), Gaps = 36/192 (18%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L+ S N + G +           P     L                       ++ +  
Sbjct: 129 TLDFSYNALSGTL-----------PPSISSL---------------------PNLVGITF 156

Query: 61  SKNYFSGDIPDCWMNWPHL-QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPV 119
             N  SG IPD + ++  L   + +  N  TG +P +   L +L  + L  N L G   V
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV 215

Query: 120 SLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179
              +  +   + + +N     +          L  L+LR+N+  G+LP  L  L FL  L
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 180 DVAHNNLSGTIP 191
           +V+ NNL G IP
Sbjct: 274 NVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  107 bits (269), Expect = 3e-26
 Identities = 45/178 (25%), Positives = 70/178 (39%), Gaps = 25/178 (14%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG-------LLDLSNNALSGSIIHLICNGDNKS 53
            +    N+I G I           P  +G        + +S N L+G I     N +   
Sbjct: 153 GITFDGNRISGAI-----------PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--- 198

Query: 54  VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRL 113
            +  + LS+N   GD    + +  + Q ++L  N    +L   +G   +L  L LRNNR+
Sbjct: 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI 256

Query: 114 AGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLC 171
            G  P  L     L SL++  N+  G IP   G    R  +    +NK     P+  C
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSPLPAC 312

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  155 bits (394), Expect = 9e-42
 Identities = 55/385 (14%), Positives = 113/385 (29%), Gaps = 62/385 (16%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALSG-----SIIHLICNG 49
           ++ + N      +P                     L++++ N              + + 
Sbjct: 253 DVEVYNCPNLTKLP-----------TFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 50  DNKSVIISLKLSKNYF-SGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHL 108
                I  + +  N   +  +         L +L    N   G LP + G+   L SL+L
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360

Query: 109 RNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNKFNG--- 164
             N++  I          + +L    N     IP     +    +  ++   N+      
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 165 ----SLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRG 219
                L         +  +++++N +S       +  + +++IN   N            
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM----------- 468

Query: 220 NIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIP-MQLTNLEGLQTLNLSHNFF 278
                +    +     E      L+ SID+  N  +      + T L  L  ++LS+N F
Sbjct: 469 ---LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525

Query: 279 VGKIPENIGNMRSIESL------DFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS 332
               P    N  +++        D   NR     P+ ++    L  L +  ND+   +  
Sbjct: 526 SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNE 583

Query: 333 S--TQLQSFGASCFSGNDLCGAPLP 355
                +          N      L 
Sbjct: 584 KITPNISVLD---IKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  152 bits (385), Expect = 1e-40
 Identities = 46/349 (13%), Positives = 106/349 (30%), Gaps = 44/349 (12%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALSGSIIHLICNG-DNKS 53
            L+L      G +P              G      +L L ++    +       G     
Sbjct: 85  GLSLEGFGASGRVPD-----------AIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133

Query: 54  VIISLKLSKNYFSGDIPD--CWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNN 111
                +  + ++     D     ++  L    ++ +    ++  S         +   +N
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 112 RLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLC 171
            +  +   ++   + L    +G + F                  N    +   +  ++  
Sbjct: 194 NITFV-SKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWD 246

Query: 172 HLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVT 230
           +L  L  ++V +      +P  +     M  IN + N+  +                   
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA--------- 297

Query: 231 KGLLVEYNSILNLVRSIDISKNNF-SGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNM 289
              L +      + + I I  NN  +  +   L  ++ L  L   +N   GK+P   G+ 
Sbjct: 298 ---LADAPVGEKI-QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSE 352

Query: 290 RSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQS 338
             + SL+ + N++             + +L+ + N L   IP+    +S
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKS 400

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  144 bits (364), Expect = 9e-38
 Identities = 46/368 (12%), Positives = 102/368 (27%), Gaps = 71/368 (19%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALSGSIIHLICNGDNKSV 54
           ++   +N I  V                          + N+      I           
Sbjct: 187 QIGQLSNNITFV------------SKAVMRLTKLRQFYMGNSPFVAENICEAWE------ 228

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
             +               W N   L  + + +      LP  +  L  ++ +++  NR  
Sbjct: 229 --NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 115 GI--------FPVSLKNCSSLISLDIGENDFF-GSIPTWVGERFPRLLILNLRSNKFNGS 165
                               +  + IG N+     + T +  +  +L +L    N+  G 
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGK 345

Query: 166 LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFED 225
           LP        L  L++A+N ++            +  ++ ++  N + Y     +     
Sbjct: 346 LP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH--NKLKYIPNIFDA---- 398

Query: 226 ASVVTKGLLVEYNSILNLVRSIDISKNNFSG-------EIPMQLTNLEGLQTLNLSHNFF 278
                        S+  +  +ID S N            +         + ++NLS+N  
Sbjct: 399 ------------KSVSVM-SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

Query: 279 VGKIPENIGNMRSIESLDFSTNRL-------FGRIPQSMSSLSFLNHLNLSENDLSGQIP 331
                E       + S++   N L            ++  +   L  ++L  N L+  + 
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LS 504

Query: 332 SSTQLQSF 339
              +  + 
Sbjct: 505 DDFRATTL 512

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  141 bits (358), Expect = 6e-37
 Identities = 53/347 (15%), Positives = 99/347 (28%), Gaps = 82/347 (23%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALSGSIIHLICNGDNKSV 54
            L    NQ+ G +P             FG       L+L+ N ++    +     +    
Sbjct: 334 MLECLYNQLEGKLP------------AFGSEIKLASLNLAYNQITEIPANFCGFTEQ--- 378

Query: 55  IISLKLSKNYFSGDIPD--CWMNWPHLQVLNLDDNYFTG-------NLPISIGTLSSLRS 105
           + +L  + N     IP+     +   +  ++   N            L  +     ++ S
Sbjct: 379 VENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

Query: 106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP-------RLLILNLR 158
           ++L NN+++          S L S+++  N     IP    +           L  ++LR
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 159 SNKFNGSLP-VQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVT 217
            NK        +   L +L  +D+++N+ S   P    N + +                 
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL----------------- 538

Query: 218 RGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNF 277
                                    +    D   N    E P  +T    L  L +  N 
Sbjct: 539 ---------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 278 FVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEN 324
               + E I    +I  LD   N         +          L  +
Sbjct: 578 IRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  138 bits (350), Expect = 8e-36
 Identities = 45/304 (14%), Positives = 87/304 (28%), Gaps = 42/304 (13%)

Query: 50  DNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGN----LPISIGTLSSLRS 105
           ++   +  L L     SG +PD       L+VL L  +    N     P  I    S   
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 106 LHLRNNRLAGIFPVSLK--NCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN 163
                      F       + S LI   I  +    SI         +   +   SN   
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI- 195

Query: 164 GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVF 223
             +   +  LT LR   + ++                                       
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY----------------- 238

Query: 224 EDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFV---- 279
                  K   ++++++ +L   +++       ++P  L  L  +Q +N++ N  +    
Sbjct: 239 -------KTEDLKWDNLKDL-TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 280 ----GKIPENIGNMRSIESLDFSTNRLF-GRIPQSMSSLSFLNHLNLSENDLSGQIPSST 334
                +   +      I+ +    N L    +  S+  +  L  L    N L G++P+  
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350

Query: 335 QLQS 338
               
Sbjct: 351 SEIK 354

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  132 bits (334), Expect = 1e-33
 Identities = 55/360 (15%), Positives = 117/360 (32%), Gaps = 57/360 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG---LLDLSNNAL-SGSIIHLICNGDNKSVII 56
            +N++ N+        D               ++ +  N L +  +   +        + 
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK---LG 333

Query: 57  SLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRNNRLAG 115
            L+   N   G     + +   L  LNL  N  T  +P +  G    + +L   +N+L  
Sbjct: 334 MLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY 391

Query: 116 I-FPVSLKNCSSLISLDIGENDF-------FGSIPTWVGERFPRLLILNLRSNKFNGSLP 167
           I      K+ S + ++D   N+        F  +      +   +  +NL +N+ +    
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF-KGINVSSINLSNNQISKFPK 450

Query: 168 VQLCHLTFLRILDVAHNNLSG-------TIPRCINNFTAMATIN-SSNQKNAIYYFVTRG 219
                 + L  +++  N L+               N   + +I+   N+   +       
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

Query: 220 NIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSH---- 275
            +                     L   ID+S N+FS   P Q  N   L+   + +    
Sbjct: 511 TLP-------------------YL-VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549

Query: 276 --NFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS 333
             N  + + PE I    S+  L   +N +  ++ + +     ++ L++ +N       S 
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  130 bits (329), Expect = 5e-33
 Identities = 45/388 (11%), Positives = 106/388 (27%), Gaps = 85/388 (21%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L L ++        F  + +     +             + +       + S +I   +
Sbjct: 109 VLALGSHGEKVNERLFGPKGISANMSDE-QKQKMRMHYQKTFVDYDPRE-DFSDLIKDCI 166

Query: 61  SKNYFSGDIPDCW-----------------------MNWPHLQVLNLDDNYFTG------ 91
           + +     I                           M    L+   + ++ F        
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 92  -------------NLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDF- 137
                           +    L  L  + + N       P  LK    +  +++  N   
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 138 -------FGSIPTWVGERFPRLLILNLRSNKF-NGSLPVQLCHLTFLRILDVAHNNLSGT 189
                               ++ I+ +  N      +   L  +  L +L+  +N L G 
Sbjct: 287 SGEQLKDDWQALADAP-VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

Query: 190 IPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDI 249
           +P    +   +A++N +   N I                    +   +      V ++  
Sbjct: 346 LP-AFGSEIKLASLNLAY--NQI------------------TEIPANFCGFTEQVENLSF 384

Query: 250 SKNNFSGEIP--MQLTNLEGLQTLNLSHNFFVG-------KIPENIGNMRSIESLDFSTN 300
           + N     IP      ++  +  ++ S+N            +        ++ S++ S N
Sbjct: 385 AHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

Query: 301 RLFGRIPQSMSSLSFLNHLNLSENDLSG 328
           ++     +  S+ S L+ +NL  N L+ 
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  122 bits (307), Expect = 4e-30
 Identities = 35/287 (12%), Positives = 87/287 (30%), Gaps = 50/287 (17%)

Query: 70  PDCWMNWP--------HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAG----IF 117
            D W   P         +  L+L+    +G +P +IG L+ L  L L ++          
Sbjct: 66  LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 118 PVSLKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNKFNGSLPVQLCHLTFL 176
           P  +    S          +  +   +   E F  L+   + S+    S+          
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 177 RILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLV 235
             +    NN++  + + +   T +      ++   A                        
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAE----------------------- 221

Query: 236 EYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESL 295
              +I     + +           ++  NL+ L  + + +   + K+P  +  +  ++ +
Sbjct: 222 ---NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 296 DFSTNRL--------FGRIPQSMSSLSFLNHLNLSENDL-SGQIPSS 333
           + + NR           +          +  + +  N+L +  + +S
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  112 bits (283), Expect = 5e-27
 Identities = 49/343 (14%), Positives = 93/343 (27%), Gaps = 92/343 (26%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL------LDLSNNALSGSIIHLICNGDNKSV 54
            LNL+ NQI  +   F            G       L  ++N L   I ++         
Sbjct: 357 SLNLAYNQITEIPANF-----------CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV- 403

Query: 55  IISLKLSKNYFSG-------DIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH 107
           + ++  S N            +        ++  +NL +N  +        T S L S++
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 108 LRNNRLAGI-------FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN 160
           L  N L  I          + KN   L S+D+  N        +     P L+ ++L  N
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

Query: 161 KFNGSLPVQLCHLTFLRIL------DVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYY 214
            F+   P Q  + + L+        D   N      P  I    ++              
Sbjct: 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL-------------- 568

Query: 215 FVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLS 274
                                           + I  N+    +  ++     +  L++ 
Sbjct: 569 ------------------------------TQLQIGSNDIRK-VNEKI--TPNISVLDIK 595

Query: 275 HNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLN 317
            N  +      +             ++      Q +     L+
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDK-----TQDIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (266), Expect = 6e-25
 Identities = 23/264 (8%), Positives = 72/264 (27%), Gaps = 35/264 (13%)

Query: 83  NLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIP 142
           N + + +     +S+ +   +  L L     +G  P ++   + L  L +G +    +  
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 143 TWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS-----GTIPRCINNF 197
            +  +     +    +           + +       D+  + ++      +I +     
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 198 TAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLV--RSIDISKNNFS 255
                I   +                         +     +++ L   R   +  + F 
Sbjct: 183 LKDTQIGQLSNN-----------------------ITFVSKAVMRLTKLRQFYMGNSPFV 219

Query: 256 GEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSF 315
            E   +    E  +                  N++ +  ++        ++P  + +L  
Sbjct: 220 AENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 316 LNHLNLSENDLSGQIPSSTQLQSF 339
           +  +N++ N            Q+ 
Sbjct: 275 MQLINVACNRGISGEQLKDDWQAL 298

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 246 SIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFG- 304
           + +   + +  +  + L +   +  L+L      G++P+ IG +  +E L   ++     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 305 ---RIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSF 339
                P+ +S+                        + F
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 15/206 (7%), Positives = 45/206 (21%), Gaps = 58/206 (28%)

Query: 160 NKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRG 219
           + +     V L     +  L +     SG +P  I   T +                   
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL------------------- 107

Query: 220 NIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSG----EIPMQLTNLEGLQTLNLSH 275
                                      + +  +          P  ++     +      
Sbjct: 108 -------------------------EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 276 NFFVGKIPENIG--NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS 333
             +     +     +   +     +++     I +S         +    N+++  +  +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201

Query: 334 ----TQLQSFGASCFSGNDLCGAPLP 355
               T+L+ F       +      + 
Sbjct: 202 VMRLTKLRQFY---MGNSPFVAENIC 224

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  153 bits (388), Expect = 9e-41
 Identities = 59/343 (17%), Positives = 110/343 (32%), Gaps = 42/343 (12%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           +L LS+NQI    P        +       L L+N  L  S+   +C     + I +L L
Sbjct: 175 KLELSSNQIKEFSP-----GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 61  SKNYFSGDIPD--CWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP 118
           S +  S         + W +L +L+L  N        S   L  L    L  N +  +F 
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 119 VSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRI 178
            SL    ++  L++  +                    ++               L  L  
Sbjct: 290 HSLHGLFNVRYLNLKRS----------------FTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 179 LDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEY 237
           L++  N++ G           +  ++ S++  +      T  N  F              
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS----LRTLTNETFV------------- 376

Query: 238 NSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPEN-IGNMRSIESLD 296
           +   + +  ++++KN  S       + L  L+ L+L  N    ++       + +I  + 
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 297 FSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSF 339
            S N+       S + +  L  L L    L     S +  Q  
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  150 bits (382), Expect = 5e-40
 Identities = 56/366 (15%), Positives = 112/366 (30%), Gaps = 34/366 (9%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLK- 59
              L  N I  +  +  H  L         L+L  +    SI        +      LK 
Sbjct: 276 YFFLEYNNIQHLFSHSLH-GLF----NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330

Query: 60  -----LSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIG----TLSSLRSLHLRN 110
                +  N   G   + +    +L+ L+L +++ +     +        S L  L+L  
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 111 NRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQL 170
           N+++ I   +      L  LD+G N+    +          +  + L  NK+        
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 171 CHLTFLRILDVAHNNLSG--TIPRCINNFTAMATINSSNQKNAIYYFVTR---------- 218
             +  L+ L +    L    + P        +  ++ SN  N I                
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN--NNIANINDDMLEGLEKLEI 508

Query: 219 ----GNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLS 274
                N +         G  + +   L+ +  +++  N F         +L  L+ ++L 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 275 HNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMS-SLSFLNHLNLSENDLSGQIPSS 333
            N           N  S++SL+   N +     +    +   L  L++  N       S 
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 628

Query: 334 TQLQSF 339
               ++
Sbjct: 629 AWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  146 bits (371), Expect = 1e-38
 Identities = 61/321 (19%), Positives = 113/321 (35%), Gaps = 28/321 (8%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
           L+L++N L                + SL +  N  S   P+     P L+VLNL  N  +
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQ---LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 91  GNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP 150
                +    ++L  LHL +N +  I         +LI+LD+  N    +       +  
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLE 145

Query: 151 RLLILNLRSNKFNGSLP--VQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSN 207
            L  L L +NK        + +   + L+ L+++ N +    P C +    +  +  ++ 
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 208 QKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEG 267
           Q                    +T+ L +E       +R++ +S +  S         L+ 
Sbjct: 206 QLG----------------PSLTEKLCLELA--NTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 268 --LQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEND 325
             L  L+LS+N       ++   +  +E      N +      S+  L  + +LNL  + 
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307

Query: 326 LSGQIPSSTQLQSFGASCFSG 346
               I S   L       F  
Sbjct: 308 TKQSI-SLASLPKIDDFSFQW 327

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  141 bits (358), Expect = 8e-37
 Identities = 71/364 (19%), Positives = 123/364 (33%), Gaps = 57/364 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALSGSIIHLICNGDNKSV 54
            L++  N I  +            P          +L+L +N LS           N   
Sbjct: 53  SLDVGFNTISKLE-----------PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN--- 98

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
           +  L L  N       + ++   +L  L+L  N  +     +   L +L+ L L NN++ 
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 115 GIFPVSLK--NCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLC- 171
            +    L     SSL  L++  N      P        RL  L L + +   SL  +LC 
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 172 --HLTFLRILDVAHNNLSGTIPRCINN--FTAMATINSSNQKNAIYYFVTRGNIVFEDAS 227
               T +R L ++++ LS T         +T +  ++ S   N +              +
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY--NNL--------------N 261

Query: 228 VVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPEN-- 285
           VV           L  +    +  NN        L  L  ++ LNL  +F    I     
Sbjct: 262 VVGNDSFAW----LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 286 -------IGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQS 338
                     ++ +E L+   N + G      + L  L +L+LS +  S +  ++    S
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377

Query: 339 FGAS 342
              S
Sbjct: 378 LAHS 381

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  141 bits (357), Expect = 1e-36
 Identities = 63/350 (18%), Positives = 118/350 (33%), Gaps = 43/350 (12%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL------LDLSNNALSGSIIHLICNGDNKSV 54
            LNL +N++  +               F        L L +N++     +      N   
Sbjct: 77  VLNLQHNELSQLS-----------DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN--- 122

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLP--ISIGTLSSLRSLHLRNNR 112
           +I+L LS N  S       +   +LQ L L +N         + I   SSL+ L L +N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 113 LAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERF--PRLLILNLRSNKFNGSLPVQL 170
           +    P        L  L +       S+   +        +  L+L +++ + +     
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 171 --CHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDAS 227
                T L +LD+++NNL+            +       N            NI    + 
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN------------NIQHLFSH 290

Query: 228 VVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIG 287
            +     V Y ++        IS  +           L+ L+ LN+  N   G       
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 288 NMRSIESLDFSTNRLFGRIPQSMS----SLSFLNHLNLSENDLSGQIPSS 333
            + +++ L  S +    R   + +    + S L+ LNL++N +S     +
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  137 bits (347), Expect = 2e-35
 Identities = 75/362 (20%), Positives = 120/362 (33%), Gaps = 53/362 (14%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALS-GSIIHLICNGDNKS 53
            LN+ +N I G+               F        L LSN+  S  ++ +        S
Sbjct: 333 HLNMEDNDIPGIKS-----------NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 54  VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPIS-IGTLSSLRSLHLRNNR 112
            +  L L+KN  S    D +    HL+VL+L  N     L       L ++  ++L  N+
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 113 LAGIFPVSLKNCSSLISLDIGENDF--FGSIPTWVGERFPRLLILNLRSNKFNGSLPVQL 170
              +   S     SL  L +         S P+        L IL+L +N         L
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDML 500

Query: 171 CHLTFLRILDVAHNNLS--------GTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNI 221
             L  L ILD+ HNNL+        G     +   + +  +N  SN              
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG------------F 548

Query: 222 VFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGK 281
                 V            L  ++ ID+  NN +        N   L++LNL  N     
Sbjct: 549 DEIPVEVFKD---------LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599

Query: 282 IPENIG-NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFG 340
             +  G   R++  LD   N            ++++N  + +  +LS     +T     G
Sbjct: 600 EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG 659

Query: 341 AS 342
             
Sbjct: 660 FP 661

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.8 bits (244), Expect = 4e-22
 Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 30/240 (12%)

Query: 102 SLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK 161
           S       + +L  +      N   +  L++  N            R+ +L  L++  N 
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTN---ITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNT 60

Query: 162 FNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNI 221
            +   P     L  L++L++ HN LS    +     T +  ++  +  N+I         
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS--NSIQK------- 111

Query: 222 VFEDASVVTKGLLVEYNSILNL--VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFV 279
                        ++ N  +    + ++D+S N  S         LE LQ L LS+N   
Sbjct: 112 -------------IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 280 GKIPENIGNM--RSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQ 337
               E +      S++ L+ S+N++    P    ++  L  L L+   L   +     L+
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  147 bits (373), Expect = 4e-39
 Identities = 60/336 (17%), Positives = 105/336 (31%), Gaps = 62/336 (18%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
             +L +  I  V  +  +    +       L+L N          + +          +L
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQH-------LELVNCKFGQFPTLKLKS--------LKRL 330

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDN--YFTGNLPISIGTLSSLRSLHLRNNRLAGIFP 118
           +     G      ++ P L+ L+L  N   F G    S    +SL+ L L  N +  +  
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

Query: 119 VSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRI 178
            +      L  LD   ++        V      L+ L++       +       L+ L +
Sbjct: 391 -NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 179 LDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYN 238
           L +A N+        I                            F +             
Sbjct: 450 LKMAGNSFQENFLPDI----------------------------FTE------------- 468

Query: 239 SILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFS 298
             L  +  +D+S+       P    +L  LQ LN+SHN F          + S++ LD+S
Sbjct: 469 --LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

Query: 299 TNRLFGRIPQSMSSL-SFLNHLNLSENDLSGQIPSS 333
            N +     Q +    S L  LNL++ND +      
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  135 bits (341), Expect = 1e-34
 Identities = 51/309 (16%), Positives = 85/309 (27%), Gaps = 60/309 (19%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
             L +  +       + +         L+L    F         +        L      
Sbjct: 287 FSLVSVTIER-----VKDFSYNFGWQHLELVNCKFGQFPTLKLKSL-----KRLTFTSNK 336

Query: 91  GNLPISIGTLSSLRSLHLRNNRLA--GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGER 148
           G    S   L SL  L L  N L+  G    S    +SL  LD+  N        ++G  
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-- 394

Query: 149 FPRLLILNLRSNKFNGSLPVQ-LCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSN 207
             +L  L+ + +             L  L  LD++H +         N  +++       
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------- 447

Query: 208 QKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEI-PMQLTNLE 266
                                                  + ++ N+F     P   T L 
Sbjct: 448 -------------------------------------EVLKMAGNSFQENFLPDIFTELR 470

Query: 267 GLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDL 326
            L  L+LS        P    ++ S++ L+ S N  F         L+ L  L+ S N +
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 327 SGQIPSSTQ 335
                   Q
Sbjct: 531 MTSKKQELQ 539

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  127 bits (320), Expect = 6e-32
 Identities = 60/364 (16%), Positives = 122/364 (33%), Gaps = 48/364 (13%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALSGSIIHLICNGDNKSV 54
            L+LS  +I  +               +        L L+ N +    +       +   
Sbjct: 56  VLDLSRCEIQTIEDG-----------AYQSLSHLSTLILTGNPIQSLALGAFSGLSS--- 101

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTG-NLPISIGTLSSLRSLHLRNNRL 113
           +  L   +   +        +   L+ LN+  N      LP     L++L  L L +N++
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 114 AGIFPVSLKNCSSL----ISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ 169
             I+   L+    +    +SLD+  N      P    E   RL  L LR+N  + ++   
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IRLHKLTLRNNFDSLNVMKT 219

Query: 170 LCH-LTFLRILDVAHNNLSGTIPRCINNFTAMATIN----SSNQKNAIYYFVTRGNIVFE 224
               L  L +  +              + +A+  +        +   + Y++     +F 
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 225 DASVVTKGLLVEYNSI--------LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHN 276
             + V+    +   +I            + +++    F     ++L +L+ L   +    
Sbjct: 280 CLTNVSS-FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 277 FFVGKIPENIGNMRSIESLDFSTNRL--FGRIPQSMSSLSFLNHLNLSENDLSGQIPSST 334
                   +  ++ S+E LD S N L   G   QS    + L +L+LS N +     +  
Sbjct: 339 -----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393

Query: 335 QLQS 338
            L+ 
Sbjct: 394 GLEQ 397

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  124 bits (314), Expect = 4e-31
 Identities = 51/302 (16%), Positives = 102/302 (33%), Gaps = 34/302 (11%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L  ++N+        D   L +       LDLS N LS        +    S +  L L
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEF-------LDLSRNGLSFKGCCSQSDFGTTS-LKYLDL 380

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRNNRLAGIFPV 119
           S N     +   ++    L+ L+   +        S+  +L +L  L + +      F  
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 120 SLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179
                SSL  L +  N F  +    +      L  L+L   +     P     L+ L++L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 180 DVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYN 238
           +++HNN             ++  ++ S N             I+      +         
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNH------------IMTSKKQEL--------Q 539

Query: 239 SILNLVRSIDISKNNFSGEIPMQ--LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLD 296
              + +  +++++N+F+     Q  L  ++  + L +         P +   M  + SL+
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLN 598

Query: 297 FS 298
            +
Sbjct: 599 IT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  122 bits (307), Expect = 3e-30
 Identities = 54/305 (17%), Positives = 91/305 (29%), Gaps = 26/305 (8%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
           LDLS N L     +   +      +  L LS+          + +  HL  L L  N   
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPE---LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 91  GNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP 150
                +   LSSL+ L      LA +    + +  +L  L++  N               
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 151 RLLILNLRSNKFNGSLPVQLCHLTFLRI----LDVAHNNLSGTIPRCINNFTAMATINSS 206
            L  L+L SNK        L  L  + +    LD++ N ++   P        +  +   
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLR 208

Query: 207 NQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE 266
           N  N     V +  I         +GL      +  LV     ++ N        L  L 
Sbjct: 209 N--NFDSLNVMKTCI---------QGL--AGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 267 GLQTLNLSHN---FFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSE 323
            L           +++  I +    + ++ S    +  +      S        HL L  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVN 313

Query: 324 NDLSG 328
                
Sbjct: 314 CKFGQ 318

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (299), Expect = 3e-29
 Identities = 52/318 (16%), Positives = 93/318 (29%), Gaps = 31/318 (9%)

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
             +L LS N         + ++P LQVL+L           +  +LS L +L L  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNG-SLPVQLCHL 173
            +   +    SSL  L   E +        +G     L  LN+  N      LP    +L
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 174 TFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGL 233
           T L  LD++ N +       +                ++   ++   + F          
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLH-----QMPLLNLSLD--LSLNPMNFIQPGAF---- 197

Query: 234 LVEYNSILNLVRSIDISKNNFSGEIP-MQLTNLEGLQTLNLSHNFFVGKI---PENIGNM 289
                  + L   + +  N  S  +    +  L GL+   L    F  +      +   +
Sbjct: 198 -----KEIRL-HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 290 RSIESLDFSTNRL------FGRIPQSMSSLSFLNHLNLSENDLSGQIPSS--TQLQSFGA 341
             + +L     RL         I    + L+ ++  +L    +      S     Q    
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 342 SCFSGNDLCGAPLPDCTE 359
                       L     
Sbjct: 312 VNCKFGQFPTLKLKSLKR 329

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  136 bits (344), Expect = 8e-35
 Identities = 56/415 (13%), Positives = 114/415 (27%), Gaps = 66/415 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALSGSIIHLICNGDNKSV 54
           ++ L N      +P                      L+++ N    +             
Sbjct: 495 DVELYNCPNMTQLP-----------DFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 55  IISLK------LSKNYFSGDIPDCWM--NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106
             +        +  N      P          L +L+   N    +L  + GT   L  L
Sbjct: 544 EDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL 600

Query: 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNKF--- 162
            L  N++  I          +  L    N     IP     +    +  ++   NK    
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 163 --NGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRG 219
             N S  +          + +++N +           + ++TI  S+N            
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL----------- 708

Query: 220 NIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIP--MQLTNLEGLQTLNLSHNF 277
                     +            L+ +ID+  N  +  +    + T L  L  +++S+N 
Sbjct: 709 ---MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC 764

Query: 278 FVGKIPENIGNMRSIESL------DFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIP 331
           F    P    N   +++       D   NR+  + P  +++   L  L +  ND+   + 
Sbjct: 765 F-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VD 822

Query: 332 SS--TQLQSFGASCFSGNDLCGAPLPDCTEKNTFAPEVPNGNGNEDEDADEVDWL 384
                QL        + N      +            V   +  +D    +   +
Sbjct: 823 EKLTPQLYILD---IADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  131 bits (330), Expect = 5e-33
 Identities = 46/330 (13%), Positives = 93/330 (28%), Gaps = 51/330 (15%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
           +  +N+  +   I +                      +    W N   L  + L +    
Sbjct: 453 IYFANSPFTYDNIAVDWE--------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 91  GNLPISIGTLSSLRSLHLRNNRLAGI---------FPVSLKNCSSLISLDIGENDFFGSI 141
             LP  +  L  L+SL++  NR                       +    +G N+     
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 142 PTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMA 201
            +   ++  +L +L+   NK    L         L  L + +N +             + 
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622

Query: 202 TINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ 261
            +  S+  N + Y     N                  S+  +  S+D S N    E    
Sbjct: 623 GLGFSH--NKLKYIPNIFNA----------------KSVYVM-GSVDFSYNKIGSEGRNI 663

Query: 262 LTNLEG-----LQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRL-------FGRIPQS 309
             +++        T+ LS+N       E       I ++  S N +             +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 310 MSSLSFLNHLNLSENDLSGQIPSSTQLQSF 339
             +   L  ++L  N L+  +    +  + 
Sbjct: 724 YKNTYLLTTIDLRFNKLTS-LSDDFRATTL 752

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  128 bits (323), Expect = 5e-32
 Identities = 48/354 (13%), Positives = 104/354 (29%), Gaps = 54/354 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALSGSIIHLICNGDNKSV 54
            L+L+     G +P              G      +L    ++ + S    +   +  + 
Sbjct: 327 GLSLAGFGAKGRVPD-----------AIGQLTELKVLSFGTHSETVSG--RLFGDEELTP 373

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNL---PISIGTLSSLRSLHL--R 109
            +S +                   L + +L  +    N    PI   +  SL+   +   
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 110 NNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ 169
            NR+  I   +++  + L  +    + F                  N    K   +  + 
Sbjct: 434 TNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELS 486

Query: 170 LCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASV 228
             +L  L  +++ +      +P  + +   + ++N + N+                 A+ 
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR--------------GISAAQ 532

Query: 229 VTKGLLVEYNSILNLV--RSIDISKNNFSG-EIPMQLTNLEGLQTLNLSHNFFVGKIPEN 285
           +        +        +   +  NN         L  +  L  L+  HN    +  E 
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEA 590

Query: 286 IGNMRSIESLDFSTNRLFGRIPQSM-SSLSFLNHLNLSENDLSGQIPSSTQLQS 338
            G    +  L    N++   IP+   +    +  L  S N L   IP+    +S
Sbjct: 591 FGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (300), Expect = 4e-29
 Identities = 46/308 (14%), Positives = 91/308 (29%), Gaps = 50/308 (16%)

Query: 50  DNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLR 109
           DN   +  L L+     G +PD       L+VL+   +  T +  +      +      R
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 110 NNRL-AGIFPVSLKNCSSLISLDIGENDF-----FGSIPTWVGERFPRLLILNLRSNKFN 163
            +R+      + L     L   D+ ++          I            I NL +N+  
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-TNRI- 437

Query: 164 GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVF 223
             +   +  LT L+I+  A++  +                                    
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN--------------- 482

Query: 224 EDASVVTKGLLVEYNSILNLV--RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVG- 280
                       E  S  NL     +++       ++P  L +L  LQ+LN++ N  +  
Sbjct: 483 ------------EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

Query: 281 --------KIPENIGNMRSIESLDFSTNRLFGRIPQS--MSSLSFLNHLNLSENDLSGQI 330
                   ++ ++      I+      N L    P S  +  +  L  L+   N +   +
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HL 588

Query: 331 PSSTQLQS 338
            +      
Sbjct: 589 EAFGTNVK 596

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  112 bits (281), Expect = 9e-27
 Identities = 36/306 (11%), Positives = 94/306 (30%), Gaps = 38/306 (12%)

Query: 57  SLKLSKNYFSGDIPDCW---MNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRL 113
           +L      +     +     +NW      N + + +     + +     +  L L     
Sbjct: 280 ALDGKNWRYYSGTINNTIHSLNWN----FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGA 335

Query: 114 AGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHL 173
            G  P ++   + L  L  G +    S   +  E     +    +         + L + 
Sbjct: 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395

Query: 174 TFLRILDVAHNNLSG---TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVT 230
             L + D+  + ++      P   ++  ++      N  N I +            ++  
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI---------SKAIQR 446

Query: 231 ----KGLLVEYNSILNL-----VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGK 281
               + +    +              +           +  +NL+ L  + L +   + +
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 282 IPENIGNMRSIESLDFSTNRL---------FGRIPQSMSSLSFLNHLNLSENDLSGQIPS 332
           +P+ + ++  ++SL+ + NR          + R+     +   +    +  N+L    P+
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPA 565

Query: 333 STQLQS 338
           S  LQ 
Sbjct: 566 SASLQK 571

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  133 bits (337), Expect = 3e-34
 Identities = 57/318 (17%), Positives = 111/318 (34%), Gaps = 24/318 (7%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
           L+ S N L            N   +  L L++        D + +   L  L L  N   
Sbjct: 38  LEFSFNVLPTIQNTTFSRLIN---LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 91  GNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP 150
                ++    +L+ L      ++ I  + L N  +L SL +G N    SI    G    
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTE 153

Query: 151 RLLILNLRSNKFNGSLPVQLCHLTFLRI--LDVAHNNLSGTIPRCINNFTAMATINSSNQ 208
           +L +L+ ++N  +      +  L       L++  N+++  I     +     ++N    
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGT 212

Query: 209 KNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNL------------VRSIDISKNNFSG 256
           +N +  F    N   +           E     ++            V SI++ K+ F  
Sbjct: 213 QNLLVIFKGLKNSTIQS----LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 257 EIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFL 316
                     GLQ L+L+      ++P  +  + +++ L  S N+       S S+   L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 317 NHLNLSENDLSGQIPSST 334
            HL++  N    ++ +  
Sbjct: 328 THLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  124 bits (313), Expect = 5e-31
 Identities = 58/336 (17%), Positives = 110/336 (32%), Gaps = 64/336 (19%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALSGSIIHLICNGDNKSVI 55
           EL+L+   +  +                GL     L LS N              N   +
Sbjct: 282 ELDLTATHLSELPSGL-----------VGLSTLKKLVLSANKFENLCQISA---SNFPSL 327

Query: 56  ISLKLSKNYFSGDIPDCWM-NWPHLQVLNLDDN--YFTGNLPISIGTLSSLRSLHLRNNR 112
             L +  N    ++    + N  +L+ L+L  +    +    + +  LS L+SL+L  N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 113 LAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCH 172
              +   + K C  L  LD+              +    L +LNL  +  + S       
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 173 LTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKG 232
           L  L+ L++  N+      +  N+                                    
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQT--------------------------------- 474

Query: 233 LLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI 292
                   L  +  + +S  + S       T+L+ +  ++LSHN       E + +++ I
Sbjct: 475 --------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 293 ESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG 328
             L+ ++N +   +P  +  LS    +NL +N L  
Sbjct: 527 Y-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 43/257 (16%), Positives = 72/257 (28%), Gaps = 50/257 (19%)

Query: 104 RSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN 163
           ++ +  N  L  I P +L   +S   L+   N    +I      R   L  L+L   +  
Sbjct: 15  KTYNCENLGLNEI-PGTL--PNSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 164 GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVF 223
                       L  L +  N L       ++                            
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK------------------------- 105

Query: 224 EDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIP 283
                              L + +   +   S    + L N + L++L L  N       
Sbjct: 106 ------------------AL-KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 284 ENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNH--LNLSENDLSGQIPSSTQLQSFGA 341
                   ++ LDF  N +     + MSSL    +  LNL+ ND++G  P +     F +
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 342 SCFSGNDLCGAPLPDCT 358
             F G            
Sbjct: 207 LNFGGTQNLLVIFKGLK 223

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  117 bits (296), Expect = 5e-30
 Identities = 51/320 (15%), Positives = 98/320 (30%), Gaps = 61/320 (19%)

Query: 30  LLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYF 89
           +   +  AL  +   L+ +      + +L+L         PD      HLQ + +D    
Sbjct: 60  IETRTGRALK-ATADLLEDATQPGRV-ALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 90  TGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVG--- 146
              LP ++   + L +L L  N L  + P S+ + + L  L I        +P  +    
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 147 -----ERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMA 201
                +    L  L L       SLP  + +L  L+ L + ++ LS  +   I++     
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP--- 229

Query: 202 TINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ 261
                                                    L   +D+         P  
Sbjct: 230 ----------------------------------------KL-EELDLRGCTALRNYPPI 248

Query: 262 LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL 321
                 L+ L L     +  +P +I  +  +E LD        R+P  ++ L     + +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 322 SENDLSGQIPSSTQLQSFGA 341
             +  +       +  +  A
Sbjct: 309 PPHLQAQLDQH--RPVARPA 326

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (265), Expect = 1e-25
 Identities = 46/270 (17%), Positives = 81/270 (30%), Gaps = 38/270 (14%)

Query: 75  NWPHLQVLNLDDNYFTGNLPISIGTLSS--LRSLHLRNNRLAGIFPVSLKNCSSLISLDI 132
           N  + Q+               +   +     +L LR+  L    P      S L  + I
Sbjct: 54  NSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTI 111

Query: 133 GENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPR 192
                   +P  +  +F  L  L L  N    +LP  +  L  LR L +        +P 
Sbjct: 112 DAAGL-MELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168

Query: 193 CINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSI----- 247
            + +  A                               + L +E+  I +L  SI     
Sbjct: 169 PLASTDASGEHQGLVN---------------------LQSLRLEWTGIRSLPASIANLQN 207

Query: 248 ----DISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF 303
                I  +  S  +   + +L  L+ L+L     +   P   G    ++ L        
Sbjct: 208 LKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 304 GRIPQSMSSLSFLNHLNLSENDLSGQIPSS 333
             +P  +  L+ L  L+L       ++PS 
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.8 bits (213), Expect = 8e-19
 Identities = 43/222 (19%), Positives = 72/222 (32%), Gaps = 34/222 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALSG---------SIIHL 45
            + +    +  +            P           L L+ N L            +  L
Sbjct: 108 HMTIDAAGLMEL------------PDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155

Query: 46  ICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS 105
                 +      +L +   S D         +LQ L L+      +LP SI  L +L+S
Sbjct: 156 SIRACPELT----ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210

Query: 106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGS 165
           L +RN+ L+ +   ++ +   L  LD+       + P   G     L  L L+      +
Sbjct: 211 LKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLT 268

Query: 166 LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSN 207
           LP+ +  LT L  LD+        +P  I    A   I    
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 41/275 (14%), Positives = 77/275 (28%), Gaps = 49/275 (17%)

Query: 79  LQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFF 138
            + L    +         +       +                 N ++            
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRA-L 68

Query: 139 GSIPTWVGE-RFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNF 197
            +    + +   P  + L LRS       P Q   L+ L+ + +    L   +P  +  F
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 198 TAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEY-NSILNLV--RSIDISKNN 253
             + T+  + N                          L     SI +L   R + I    
Sbjct: 127 AGLETLTLARNP-------------------------LRALPASIASLNRLRELSIRACP 161

Query: 254 FSGEIPMQLTN---------LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFG 304
              E+P  L +         L  LQ+L L        +P +I N+++++SL    + L  
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220

Query: 305 RIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQS 338
            +  ++  L  L  L+L         P        
Sbjct: 221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.0 bits (198), Expect = 9e-17
 Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 28/205 (13%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL------LDLSNNALSGSIIHLICNGDNKSV 54
            L L+ N +  +            P           L +        +   + + D    
Sbjct: 131 TLTLARNPLRAL------------PASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 55  IISLK------LSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHL 108
              L       L        +P    N  +L+ L + ++  +  L  +I  L  L  L L
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236

Query: 109 RNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPV 168
           R       +P      + L  L + +     ++P  +  R  +L  L+LR       LP 
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPS 295

Query: 169 QLCHLTFLRILDVAHNNLSGTIPRC 193
            +  L    I+ V   +L   + + 
Sbjct: 296 LIAQLPANCIILV-PPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 28/253 (11%), Positives = 77/253 (30%), Gaps = 50/253 (19%)

Query: 96  SIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLIL 155
                S   +L+ + +     +   L       + D                       +
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS------NNPQI 60

Query: 156 NLRSNKFNGSLPVQLCHLTF--LRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAI 212
             R+ +   +    L   T      L++    L    P      + +  +   +      
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG---- 115

Query: 213 YYFVTRGNIVFEDASVVTKGLLVEY-NSILNLV--RSIDISKNNFSGEIPMQLTNLEGLQ 269
                                L+E  +++       ++ +++N     +P  + +L  L+
Sbjct: 116 ---------------------LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 270 TLNLSHNFFVGKIPENIGN---------MRSIESLDFSTNRLFGRIPQSMSSLSFLNHLN 320
            L++     + ++PE + +         + +++SL      +   +P S+++L  L  L 
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLK 212

Query: 321 LSENDLSGQIPSS 333
           +  + LS  +  +
Sbjct: 213 IRNSPLS-ALGPA 224

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  114 bits (288), Expect = 9e-28
 Identities = 61/331 (18%), Positives = 95/331 (28%), Gaps = 65/331 (19%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL--LDLSNNALSGSIIHLICNGDNKSVIISL 58
            ++L+   I         + L   P  F    L +    L            +   + SL
Sbjct: 289 AMSLAGVSI---------KYLEDVPKHFKWQSLSIIRCQLKQF------PTLDLPFLKSL 333

Query: 59  KLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT--GNLPISIGTLSSLRSLHLRNNRLAGI 116
            L+ N   G I    +  P L  L+L  N  +  G    S    +SLR L L  N    I
Sbjct: 334 TLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-II 390

Query: 117 FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL 176
              +      L  LD   +               +LL L++               LT L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 177 RILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVE 236
             L +A N+        +                            F +           
Sbjct: 451 NTLKMAGNSFKDNTLSNV----------------------------FAN----------- 471

Query: 237 YNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLD 296
                  +  +D+SK             L  LQ LN+SHN  +     +   + S+ +LD
Sbjct: 472 ----TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

Query: 297 FSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
            S NR+             L   NL+ N ++
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  108 bits (271), Expect = 2e-25
 Identities = 56/345 (16%), Positives = 110/345 (31%), Gaps = 36/345 (10%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL--LDLSNNALSGSIIHLICNGDNKSVIISL 58
            ++LS N +  +  Y              L  LDLS   +            +   + +L
Sbjct: 36  NIDLSFNPLKILKSY-SFSNFSE------LQWLDLSRCEIETIEDKAWHGLHH---LSNL 85

Query: 59  KLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGI-F 117
            L+ N      P  +     L+ L   +          IG L +L+ L++ +N +     
Sbjct: 86  ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 118 PVSLKNCSSLISLDIGENDFFGSIP---TWVGERFPRLLILNLRSNKFNGSLPVQLCHLT 174
           P    N ++L+ +D+  N           ++ E     L L++  N  +  +  Q     
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI 204

Query: 175 FLRILDVAHNNLSGTIPR-CINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGL 233
            L  L +  N  S  I + C+ N   +                       ++ ++     
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL------------GEFKDERNLEIFEP 252

Query: 234 LVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIE 293
            +        +    ++  N   +  ++   L  +  ++L+      K  E++      +
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQ 310

Query: 294 SLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQS 338
           SL     +L  + P     L FL  L L+ N  S        L S
Sbjct: 311 SLSIIRCQL-KQFPT--LDLPFLKSLTLTMNKGS-ISFKKVALPS 351

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  107 bits (269), Expect = 3e-25
 Identities = 56/360 (15%), Positives = 95/360 (26%), Gaps = 54/360 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSG-----SIIHLICNGDNKSVI 55
           EL L  N     I     + L        +  L                 I  G     I
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLA----GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 56  ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLP-------------------IS 96
              +L+      D    +    ++  ++L                               
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 97  IGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIP-TWVGERFPRLLIL 155
              L  L+SL L  N+ +  F        SL  LD+  N    S   ++       L  L
Sbjct: 324 TLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 156 NLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPR-CINNFTAMATINSSNQKNAIYY 214
           +L  N     +      L  L+ LD  H+ L          +   +  ++ S        
Sbjct: 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY--TNT-- 436

Query: 215 FVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ-LTNLEGLQTLNL 273
                        +   G+ +   S+  L     ++ N+F          N   L  L+L
Sbjct: 437 ------------KIDFDGIFLGLTSLNTL----KMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 274 SHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS 333
           S              +  ++ L+ S N L        + L  L+ L+ S N +       
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  104 bits (262), Expect = 2e-24
 Identities = 63/369 (17%), Positives = 111/369 (30%), Gaps = 56/369 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALSGSIIHLICNGDNKSV 54
            L+LS  +I  +               +        L L+ N +            +   
Sbjct: 60  WLDLSRCEIETIEDK-----------AWHGLHHLSNLILTGNPIQSFSPGSFSGLTS--- 105

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTG-NLPISIGTLSSLRSLHLRNNRL 113
           + +L   +   +            L+ LN+  N+     LP     L++L  + L  N +
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 114 AGIFPVSLKN----CSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ 169
             I    L+         +SLD+  N     I      +  +L  L LR N  + ++   
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKT 223

Query: 170 LCH-LTFLRILDVAHNNLSGTI------PRCINNFTAMATINSSNQKNAIYYFVTRGNIV 222
               L  L +  +               P  +     +                +   + 
Sbjct: 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND---FSDDIVK 280

Query: 223 FEDASVVTKGLLVEYNSI--------LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLS 274
           F   + V+  + +   SI            +S+ I +        + L     L++L L+
Sbjct: 281 FHCLANVSA-MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF---LKSLTLT 336

Query: 275 HNFFVGKIPENIGNMRSIESLDFSTNRL--FGRIPQSMSSLSFLNHLNLSENDL---SGQ 329
            N   G I      + S+  LD S N L   G    S    + L HL+LS N     S  
Sbjct: 337 MN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394

Query: 330 IPSSTQLQS 338
                +LQ 
Sbjct: 395 FMGLEELQH 403

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  104 bits (261), Expect = 3e-24
 Identities = 55/316 (17%), Positives = 98/316 (31%), Gaps = 33/316 (10%)

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
             ++ LS N         + N+  LQ L+L           +   L  L +L L  N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNG-SLPVQLCHL 173
              P S    +SL +L   E          +G+    L  LN+  N  +   LP    +L
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 174 TFLRILDVAHNNLSGTIPRCINNFTAMATINSSN--QKNAIYYFVTRGNIVFEDASVVTK 231
           T L  +D+++N +       +        +N S     N I +     +  F+       
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI---QDQAFQG------ 203

Query: 232 GLLVEYNSILNLVRSIDISKNNFSGEIP-MQLTNLEGLQTLNLSHNFFVGKIPENIGNMR 290
                    + L   + +  N  S  I    L NL GL    L    F  +    I    
Sbjct: 204 ---------IKL-HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 291 --------SIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGAS 342
                   +I+    +    F         L+ ++ ++L+   +   +    +   + + 
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSL 312

Query: 343 CFSGNDLCGAPLPDCT 358
                 L   P  D  
Sbjct: 313 SIIRCQLKQFPTLDLP 328

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 21/95 (22%), Positives = 36/95 (37%)

Query: 239 SILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFS 298
            I +  ++ID+S N          +N   LQ L+LS         +    +  + +L  +
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 299 TNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS 333
            N +    P S S L+ L +L   E  L+      
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  107 bits (268), Expect = 4e-25
 Identities = 67/366 (18%), Positives = 118/366 (32%), Gaps = 36/366 (9%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L LS N I   +       L     +  LL+L +     +I            +  L L
Sbjct: 28  RLLLSFNYI-RTVTASSFPFLE----QLQLLELGSQYTPLTIDKEAFRNLPN--LRILDL 80

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNL--PISIGTLSSLRSLHLRNNRLAGI-F 117
             +      PD +    HL  L L     +  +        L +L  L L  N++  +  
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 118 PVSLKNCSSLISLDIGENDFFGSIP-TWVGERFPRLLILNLRSNKFNGSLPVQLCHL--- 173
             S    +SL S+D   N  F          +   L   +L +N     + V        
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 174 ---TFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVT 230
                L ILDV+ N  +  I    +N  + +   S    + I       + + +      
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 231 KGLL--------VEYNSILNL----------VRSIDISKNNFSGEIPMQLTNLEGLQTLN 272
            GL         + +  + +L          ++ ++++ N  +         L+ LQ LN
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 273 LSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS 332
           LS+N        N   +  +  +D   N +     Q+   L  L  L+L +N L+  I  
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF 379

Query: 333 STQLQS 338
              +  
Sbjct: 380 IPSIPD 385

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  105 bits (264), Expect = 2e-24
 Identities = 67/392 (17%), Positives = 136/392 (34%), Gaps = 53/392 (13%)

Query: 1   ELNLSNNQIYGVIPY-FDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLK 59
             +L+ N +Y  +   +     P++     +LD+S N  +  I     N  +KS   SL 
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 60  LSKNYFSGDIPDC-----------WMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHL 108
           L+ +                     +    ++ L+L   +          TL  L+ L+L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 109 RNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPV 168
             N++  I   +     +L  L++  N   G + +      P++  ++L+ N        
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 169 QLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIV----- 222
               L  L+ LD+  N L+      I+   ++  I  S N+   +       N++     
Sbjct: 357 TFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411

Query: 223 -FEDASVVT--------KGLLVEYNSILNL-----------VRSIDISKNNFSGEIPMQL 262
             E+  ++         + L++  N   +            +  + + +N        +L
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

Query: 263 -----TNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLN 317
                  L  LQ L L+HN+     P    ++ ++  L  ++NRL   +       + L 
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL--TVLSHNDLPANLE 529

Query: 318 HLNLSENDLSGQIPSSTQLQSFGASCFSGNDL 349
            L++S N L    P+     S      + N  
Sbjct: 530 ILDISRNQLL--APNPDVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 45/288 (15%), Positives = 87/288 (30%), Gaps = 32/288 (11%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAG-IFPVSLKNCSSLISLDIGEN 135
              + L L  NY       S   L  L+ L L +      I   + +N  +L  LD+G +
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSL--PVQLCHLTFLRILDVAHNNLSGTIPR- 192
                +     +    L  L L     + ++       +L  L  LD++ N +       
Sbjct: 84  K-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 193 ---------------------CINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTK 231
                                C +    +     S    A     +R ++ +       +
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 232 GLLVEYNSILNLVRSIDISK---NNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN 288
            +++E   +     ++DI+    N  S      L     +       +            
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 289 MR--SIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSST 334
           +   S+  LD S   +F    +   +L  L  LNL+ N ++ +I    
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEA 309

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.4 bits (170), Expect = 9e-13
 Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 46/233 (19%)

Query: 100 LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS 159
           L++   L L  N +  +   S      L  L++G      +I        P L IL+L S
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 160 NKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRG 219
           +K     P     L  L  L +    LS  + +                           
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK--------------------------- 115

Query: 220 NIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSG-EIPMQLTNLEGLQTLNLSHNFF 278
           +  F +               L  +  +D+SKN      +      L  L++++ S N  
Sbjct: 116 DGYFRN---------------LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 279 VGKIPENIGN--MRSIESLDFSTNRLFGRIPQS-MSSLSFLNHLNLSENDLSG 328
                  +     +++     + N L+ R+       ++   ++ L   D+SG
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.9 bits (153), Expect = 9e-11
 Identities = 46/197 (23%), Positives = 75/197 (38%), Gaps = 31/197 (15%)

Query: 2   LNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALSGSIIHLICNGDNKSVII 56
           ++LS N++           L    F   +     L L+ N  S        + +    + 
Sbjct: 406 IHLSENRLEN---------LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS--LE 454

Query: 57  SLKLSKNYFSGDI-----PDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNN 111
            L L +N            D +    HLQVL L+ NY     P     L++LR L L +N
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514

Query: 112 RLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLC 171
           RL  +    L   ++L  LDI  N     +     + F  L +L++  NKF     +   
Sbjct: 515 RLTVLSHNDLP--ANLEILDISRN----QLLAPNPDVFVSLSVLDITHNKFICECELS-- 566

Query: 172 HLTFLRILDVAHNNLSG 188
             TF+  L+  +  ++G
Sbjct: 567 --TFINWLNHTNVTIAG 581

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 6e-09
 Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 28/220 (12%)

Query: 143 TWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTI-PRCINNFTAMA 201
           T V +       L L  N            L  L++L++       TI      N   + 
Sbjct: 17  TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76

Query: 202 TINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEI--P 259
            ++  +  + IY+        F+                L  +  + +     S  +   
Sbjct: 77  ILDLGS--SKIYFLHPD---AFQG---------------LFHLFELRLYFCGLSDAVLKD 116

Query: 260 MQLTNLEGLQTLNLSHNFFVG-KIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSF--L 316
               NL+ L  L+LS N      +  + G + S++S+DFS+N++F      +  L    L
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 317 NHLNLSENDLSGQIPSS--TQLQSFGASCFSGNDLCGAPL 354
           +  +L+ N L  ++       +  F        D+ G   
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (260), Expect = 2e-24
 Identities = 40/324 (12%), Positives = 105/324 (32%), Gaps = 38/324 (11%)

Query: 58  LKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIF 117
            K++ +     +     +  +++ L+L  N  +      +   + L  L+L +N L    
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL 74

Query: 118 PVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLR 177
              L++ S+L +LD+  N     +        P +  L+  +N  +  +          +
Sbjct: 75  D--LESLSTLRTLDLNNNY-VQELLV-----GPSIETLHAANNNIS-RVSCSR--GQGKK 123

Query: 178 ILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVE 236
            + +A+N ++          + +  ++   N+ + + +     +                
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS---------------- 167

Query: 237 YNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLD 296
                + +  +++  N    ++         L+TL+LS N     +     +   +  + 
Sbjct: 168 ----SDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 297 FSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPLPD 356
              N+L   I +++     L H +L  N            ++      +   +    L  
Sbjct: 221 LRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV--KKLTG 277

Query: 357 CTEKNTFAPEVPNGNGNEDEDADE 380
             E+    P + +      ED   
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPA 301

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.3 bits (237), Expect = 2e-21
 Identities = 56/345 (16%), Positives = 109/345 (31%), Gaps = 33/345 (9%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            LNLS+N +Y  +       L         LDL+NN +   ++           I +L  
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRT-------LDLNNNYVQ-ELLVG-------PSIETLHA 106

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGI-FPV 119
           + N  S  +          + + L +N  T    +  G  S ++ L L+ N +  + F  
Sbjct: 107 ANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 120 SLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179
              +  +L  L++  N F   +   V   F +L  L+L SNK    +  +      +  +
Sbjct: 164 LAASSDTLEHLNLQYN-FIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 180 DVAHNNLSGTIPRCINNFTAMATIN-SSNQ-----KNAIYYFVTRGNIVFEDASVVTKGL 233
            + +N L   I + +     +   +   N          +    R   V +       G 
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 234 LVEYNSILNLVRSIDISKNNFSGEIPMQLTNL--EGLQTLNLSHNFFVGKIPENIGNMRS 291
             E  ++  L         +       +L  L  +    L+   +    ++     N   
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET-ERLECERENQAR 337

Query: 292 IESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQL 336
              +D    +    I Q          L   +  L  Q+ +  + 
Sbjct: 338 QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.9 bits (210), Expect = 5e-18
 Identities = 42/328 (12%), Positives = 101/328 (30%), Gaps = 69/328 (21%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
              ++++ +   +          +      LDLS N LS      +        +  L L
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVK-----ELDLSGNPLSQISAADLAPFTK---LELLNL 65

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           S N    +  D   +   L+ L+L++NY        +    S+ +LH  NN ++ +   S
Sbjct: 66  SSNVLY-ETLDLE-SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV---S 115

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNG-SLPVQLCHLTFLRIL 179
                   ++ +  N     +         R+  L+L+ N+ +  +          L  L
Sbjct: 116 CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 180 DVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNS 239
           ++ +N +   +   +                                             
Sbjct: 175 NLQYNFIY-DVKGQVV-------------------------------------------- 189

Query: 240 ILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFST 299
               ++++D+S N  +  +  +  +  G+  ++L +N  V  I + +   +++E  D   
Sbjct: 190 -FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 300 NRLFGRIPQSMSSLSFLNHLNLSENDLS 327
           N                    +++  + 
Sbjct: 247 NGF-HCGTLRDFFSKNQRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.2 bits (203), Expect = 4e-17
 Identities = 46/335 (13%), Positives = 92/335 (27%), Gaps = 31/335 (9%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            + L+NN+I  ++   D             LDL  N +    ++      +   +  L L
Sbjct: 124 NIYLANNKI-TMLRDLDEGCRS----RVQYLDLKLNEIDT--VNFAELAASSDTLEHLNL 176

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
             N+   D+    + +  L+ L+L  N     +     + + +  + LRNN+L  I   +
Sbjct: 177 QYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI-EKA 232

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
           L+   +L   D+  N F          +  R+  +  ++ K       + C  T   +  
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC--TVPTLGH 290

Query: 181 VAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI 240
                         +   A+                 R               L      
Sbjct: 291 YGAYCCEDLPAPFADRLIAL----------------KRKEHALLSGQGSETERLECEREN 334

Query: 241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTN 300
               R ID  K  +   I       +   TL         ++         ++       
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394

Query: 301 RL--FGRIPQSMSSLSFLNHLNLSENDLSGQIPSS 333
                    +  S L  L  +     ++  +  S 
Sbjct: 395 GQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSV 429

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (253), Expect = 4e-24
 Identities = 35/271 (12%), Positives = 93/271 (34%), Gaps = 36/271 (13%)

Query: 58  LKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIF 117
            K++ +     +     +  +++ L+L  N  +      +   + L  L+L +N L    
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL 74

Query: 118 PVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLR 177
              L++ S+L +LD+  N     +        P +  L+  +N  +  +          +
Sbjct: 75  D--LESLSTLRTLDLNNNY-VQELLV-----GPSIETLHAANNNIS-RVSCSR--GQGKK 123

Query: 178 ILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVE 236
            + +A+N ++          + +  ++   N+ + + +     +                
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS---------------- 167

Query: 237 YNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLD 296
                + +  +++  N    ++         L+TL+LS N     +     +   +  + 
Sbjct: 168 ----SDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 297 FSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
              N+L   I +++     L H +L  N   
Sbjct: 221 LRNNKL-VLIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.7 bits (223), Expect = 3e-20
 Identities = 53/292 (18%), Positives = 102/292 (34%), Gaps = 41/292 (14%)

Query: 69  IPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLI 128
           I +   N    ++  + D+     L     +  +++ L L  N L+ I    L   + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 129 SLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSG 188
            L++  N  + ++     E    L  L+L +N        +L     +  L  A+NN+S 
Sbjct: 62  LLNLSSNVLYETLDL---ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 189 TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSID 248
            +    +       I  +N  N I              +++        + +  L    D
Sbjct: 113 RVS--CSRGQGKKNIYLAN--NKI--------------TMLRDLDEGCRSRVQYL----D 150

Query: 249 ISKNNFSG-EIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIP 307
           +  N            + + L+ LNL +NF    +   +     +++LD S+N+L   + 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL-AFMG 207

Query: 308 QSMSSLSFLNHLNLSENDLS---GQIPSSTQLQSFGASCFSGNDLCGAPLPD 356
               S + +  ++L  N L      +  S  L+ F      GN      L D
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD---LRGNGFHCGTLRD 256

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 50/329 (15%), Positives = 104/329 (31%), Gaps = 83/329 (25%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALSG--SIIHLICNGDNK 52
           EL+LS N +  +              +        LL+LS+N L     +  L       
Sbjct: 38  ELDLSGNPLSQI-----------SAADLAPFTKLELLNLSSNVLYETLDLESL------- 79

Query: 53  SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNR 112
           S + +L L+ NY   ++       P ++ L+  +N  +    +S       ++++L NN+
Sbjct: 80  STLRTLDLNNNYVQ-ELLVG----PSIETLHAANNNISR---VSCSRGQGKKNIYLANNK 131

Query: 113 LAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCH 172
           +  +  +     S +  LD+  N+        +      L  LNL+ N     +      
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVV 189

Query: 173 LTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKG 232
              L+ LD++ N L+  +     +                                    
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAA---------------------------------- 214

Query: 233 LLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHN-FFVGKIPENIGNMRS 291
                     +   I +  N     I   L   + L+  +L  N F  G + +     + 
Sbjct: 215 ---------GV-TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 292 IESLDFSTNRLFGRIPQSMSSLSFLNHLN 320
           ++++   T +      +   ++  L H  
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.1 bits (240), Expect = 3e-22
 Identities = 64/340 (18%), Positives = 125/340 (36%), Gaps = 46/340 (13%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
              L    +  V+   +   +         L ++   ++ SI  +    +  + +  L L
Sbjct: 26  RAVLQKASVTDVVTQEELESITK-------LVVAGEKVA-SIQGI----EYLTNLEYLNL 73

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           + N  +   P   +    L  L +  N  T     ++  L++LR L+L  + ++ I P  
Sbjct: 74  NGNQITDISPLSNL--VKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP-- 127

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
           L N + + SL++G N     +          L  L +  +K     P  + +LT L  L 
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPL--SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 181 VAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNS 239
           + +N +    P  + + T++       NQ   I        +           L +  N 
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRL---------NSLKIGNNK 232

Query: 240 I--------LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRS 291
           I        L+ +  ++I  N  S      + +L  L+ LN+  N         + N+  
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQI--SDISVLNNLSQ 288

Query: 292 IESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIP 331
           + SL  + N+L     + +  L+ L  L LS+N ++   P
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.4 bits (202), Expect = 3e-17
 Identities = 56/291 (19%), Positives = 103/291 (35%), Gaps = 37/291 (12%)

Query: 57  SLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGI 116
           +L       +   PD   +        L     T    ++   L S+  L +   ++A I
Sbjct: 4   TLATLPAPINQIFPDA--DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASI 59

Query: 117 FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL 176
               ++  ++L  L++  N      P        +L  L + +NK   +    L +LT L
Sbjct: 60  QG--IEYLTNLEYLNLNGNQITDISPL---SNLVKLTNLYIGTNKI--TDISALQNLTNL 112

Query: 177 RILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLV 235
           R L +  +N+S   P  + N T M ++N  +N                 + + +   L V
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHN-------LSDLSPLSNMTGLNY-LTV 162

Query: 236 EYNSI--------LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIG 287
             + +        L  + S+ ++ N      P  L +L  L       N         + 
Sbjct: 163 TESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVA 218

Query: 288 NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQS 338
           NM  + SL    N++    P  +++LS L  L +  N +S  I +   L  
Sbjct: 219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTK 266

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 39/232 (16%), Positives = 88/232 (37%), Gaps = 42/232 (18%)

Query: 103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKF 162
             +L      +  IFP    + +  I   + +      +     E    +  L +   K 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQ---EELESITKLVVAGEKV 56

Query: 163 NGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNI 221
             S+   + +LT L  L++  N ++   P  ++N   +  +   +N+             
Sbjct: 57  A-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK------------- 99

Query: 222 VFEDASVVTKGLLVEYNSILNLV--RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFV 279
                       + + +++ NL   R + ++++N S   P  L NL  + +LNL  N  +
Sbjct: 100 ------------ITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL 145

Query: 280 GKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIP 331
                 + NM  +  L  + +++  +    +++L+ L  L+L+ N +    P
Sbjct: 146 -SDLSPLSNMTGLNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISP 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 21/187 (11%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L+L+ NQI  + P      L Y            N ++  I  +     N + + SLK+
Sbjct: 181 SLSLNYNQIEDISPLASLTSLHY-------FTAYVNQIT-DITPV----ANMTRLNSLKI 228

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
             N  +   P    N   L  L +  N  +     ++  L+ L+ L++ +N+++ I    
Sbjct: 229 GNNKITDLSPLA--NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV-- 282

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
           L N S L SL +  N         +G     L  L L  N      P  L  L+ +   D
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339

Query: 181 VAHNNLS 187
            A+  + 
Sbjct: 340 FANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 11/106 (10%)

Query: 246 SIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGR 305
           ++       +   P    +L       L               + SI  L  +  ++   
Sbjct: 4   TLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV--A 57

Query: 306 IPQSMSSLSFLNHLNLSENDLSGQIPSS--TQLQSFGASCFSGNDL 349
             Q +  L+ L +LNL+ N ++   P S   +L +        N +
Sbjct: 58  SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNL---YIGTNKI 100

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 96.7 bits (241), Expect = 3e-22
 Identities = 62/343 (18%), Positives = 118/343 (34%), Gaps = 55/343 (16%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALS----GSIIHLICNGDNKSVII 56
            +   N+ +   +P            +  LL+L++  +      +  +          I 
Sbjct: 49  IVTFKNSTM-RKLPAALLDSFR----QVELLNLNDLQIEEIDTYAFAYA-------HTIQ 96

Query: 57  SLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRNNRLAG 115
            L +  N      P  + N P L VL L+ N  + +LP  I      L +L + NN L  
Sbjct: 97  KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 155

Query: 116 IFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTF 175
           I   + +  +SL +L +  N     +        P L   N+  N  +      L     
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRL-THVDL---SLIPSLFHANVSYNLLS-----TLAIPIA 206

Query: 176 LRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLL 234
           +  LD +HN+++  +         +  +    N      + +    +V          + 
Sbjct: 207 VEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVE---------VD 254

Query: 235 VEYNSI----------LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPE 284
           + YN +          +  +  + IS N     + +    +  L+ L+LSHN  +  +  
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312

Query: 285 NIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
           N      +E+L    N +   +    S+   L +L LS ND  
Sbjct: 313 NQPQFDRLENLYLDHNSI-VTLKL--STHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.8 bits (218), Expect = 3e-19
 Identities = 54/277 (19%), Positives = 108/277 (38%), Gaps = 26/277 (9%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
            + +++   ++         + +   +  L+L + ++  I   +     ++  L +G N 
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN- 103

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQL-CHLTFLRILDVAHNNLSGTIPRCIN 195
               +P  V +  P L +L L  N  + SLP  +  +   L  L +++NNL         
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 196 NFTAMATIN-SSNQ---------KNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNL-- 243
             T++  +  SSN+          +  +  V+   +      +  + L   +NSI  +  
Sbjct: 163 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222

Query: 244 -----VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSIESLDF 297
                +  + +  NN + +    L N  GL  ++LS+N    KI  +    M+ +E L  
Sbjct: 223 PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYI 279

Query: 298 STNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSST 334
           S NRL   +      +  L  L+LS N L   +  + 
Sbjct: 280 SNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 43/259 (16%), Positives = 96/259 (37%), Gaps = 28/259 (10%)

Query: 78  HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDF 137
               +++D             TL++ + +  +N+ +  +    L +   +  L++ +   
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ- 80

Query: 138 FGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCI-NN 196
              I T+       +  L +  N      P    ++  L +L +  N+LS ++PR I +N
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 139

Query: 197 FTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNL-------VRSID 248
              + T++ S+N    I       +  F+  + +   L +  N + ++       +   +
Sbjct: 140 TPKLTTLSMSNNNLERI------EDDTFQATTSLQN-LQLSSNRLTHVDLSLIPSLFHAN 192

Query: 249 ISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQ 308
           +S N  S      L     ++ L+ SHN     +   +     +  L    N L      
Sbjct: 193 VSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL--TDTA 242

Query: 309 SMSSLSFLNHLNLSENDLS 327
            + +   L  ++LS N+L 
Sbjct: 243 WLLNYPGLVEVDLSYNELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 31/236 (13%)

Query: 93  LPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRL 152
           +  ++        +H+        F       ++   +    +     +P  + + F ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQV 71

Query: 153 LILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI 212
            +LNL   +          +   ++ L +  N +    P    N   +  +      N +
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER--NDL 129

Query: 213 YYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ-LTNLEGLQTL 271
                         S + +G+          + ++ +S NN    I          LQ L
Sbjct: 130 --------------SSLPRGIFHN----TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNL 170

Query: 272 NLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
            LS N     +   +  + S+   + S N L      +++    +  L+ S N ++
Sbjct: 171 QLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSIESLDFST 299
             +   + I           +   L   + +   ++    K+P  +  + R +E L+ + 
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLND 78

Query: 300 NRLFGRIPQSM-SSLSFLNHLNLSENDLSGQIPSST 334
            ++   I     +    +  L +  N +   +P   
Sbjct: 79  LQI-EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 112

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.0 bits (242), Expect = 5e-22
 Identities = 73/339 (21%), Positives = 126/339 (37%), Gaps = 56/339 (16%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L L NNQI  + P  +   L         L+LS+N +S      I      + +  L  
Sbjct: 116 GLTLFNNQITDIDPLKNLTNLNR-------LELSSNTISD-----ISALSGLTSLQQLSF 163

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
             N  +   P    N   L+ L++  N  +      +  L++L SL   NN+++ I P  
Sbjct: 164 G-NQVTDLKPLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP-- 216

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
           L   ++L  L +  N     I T        L  L+L +N+ +   P  L  LT L  L 
Sbjct: 217 LGILTNLDELSLNGNQ-LKDIGTL--ASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 271

Query: 181 VAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNS 239
           +  N +S   P  +   TA+  +  + NQ   I                          S
Sbjct: 272 LGANQISNISP--LAGLTALTNLELNENQLEDISPI-----------------------S 306

Query: 240 ILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFST 299
            L  +  + +  NN S   P  +++L  LQ L   +N        ++ N+ +I  L    
Sbjct: 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGH 362

Query: 300 NRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQS 338
           N++    P  +++L+ +  L L++   +    +     S
Sbjct: 363 NQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.9 bits (221), Expect = 2e-19
 Identities = 70/353 (19%), Positives = 130/353 (36%), Gaps = 52/353 (14%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           +  L    +   +   D   +         L      +    I  +   +N   +  +  
Sbjct: 28  KTVLGKTNVTDTVSQTDLDQVTT-------LQADRLGIK--SIDGVEYLNN---LTQINF 75

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           S N  +   P   +    L  + +++N         +  L++L  L L NN++  I P  
Sbjct: 76  SNNQLTDITPLKNL--TKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP-- 129

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
           LKN ++L  L++  N     I          L  L+   N+     P  L +LT L  LD
Sbjct: 130 LKNLTNLNRLELSSNT-ISDISAL--SGLTSLQQLSF-GNQVTDLKP--LANLTTLERLD 183

Query: 181 VAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNS 239
           ++ N +S      +   T + ++  ++NQ + I       N+           L +  N 
Sbjct: 184 ISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNL---------DELSLNGNQ 232

Query: 240 ILNLV--------RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRS 291
           + ++           +D++ N  S   P  L+ L  L  L L  N         +  + +
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTA 288

Query: 292 IESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS--TQLQSFGAS 342
           + +L+ + N+L    P  +S+L  L +L L  N++S   P S  T+LQ     
Sbjct: 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 67/343 (19%), Positives = 119/343 (34%), Gaps = 62/343 (18%)

Query: 1   ELNLSNNQIYGVIP----------YFDHRPLPYQPFEFGL-----LDLSNNALSGSIIHL 45
            L LS+N I  +             F ++    +P    L     LD+S+N +S      
Sbjct: 138 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA-NLTTLERLDISSNKVSD----- 191

Query: 46  ICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS 105
           I      + + SL  + N  S   P       +L  L+L+ N        ++ +L++L  
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTD 247

Query: 106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGS 165
           L L NN+++ + P  L   + L  L +G N      P         L  L L  N+    
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL---AGLTALTNLELNENQLEDI 302

Query: 166 LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFE 224
            P  + +L  L  L +  NN+S   P  +++ T +  +   +N+ + +            
Sbjct: 303 SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSL--------- 349

Query: 225 DASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPE 284
                         + L  +  +    N  S   P  L NL  +  L L+   +    P 
Sbjct: 350 --------------ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APV 392

Query: 285 NIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
           N     SI +   +        P ++S        +++ N  S
Sbjct: 393 NYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 61/309 (19%), Positives = 104/309 (33%), Gaps = 48/309 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L  +NNQI  + P      L         L L+ N L    I  + +  N   +  L L
Sbjct: 203 SLIATNNQISDITPLGILTNLDE-------LSLNGNQLKD--IGTLASLTN---LTDLDL 250

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           + N  S   P        L  L L  N  +      +  L++L +L L  N+L  I P  
Sbjct: 251 ANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP-- 304

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
           + N  +L  L +  N+     P        +L  L   +NK +      L +LT +  L 
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLS 359

Query: 181 VAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI 240
             HN +S   P  + N T +  +  ++Q              + +A V  K  +   N++
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQA-------------WTNAPVNYKANVSIPNTV 404

Query: 241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTN 300
            N            +   P  +++       +++ N       E         ++   T 
Sbjct: 405 KN---------VTGALIAPATISDGGSYTEPDITWN-LPSYTNEVSYTFSQPVTIGKGTT 454

Query: 301 RLFGRIPQS 309
              G + Q 
Sbjct: 455 TFSGTVTQP 463

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.8 bits (169), Expect = 7e-13
 Identities = 54/268 (20%), Positives = 98/268 (36%), Gaps = 39/268 (14%)

Query: 84  LDDNYFTGNLPIS----IGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFG 139
           L     T + PI+       L+      L    +     VS  +   + +L         
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLG-IK 59

Query: 140 SIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTA 199
           SI     E    L  +N  +N+     P  L +LT L  + + +N ++   P  + N T 
Sbjct: 60  SIDGV--EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTN 113

Query: 200 MATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI--------LNLVRSIDIS 250
           +  +   +NQ   I       N+           L +  N+I        L  ++ +   
Sbjct: 114 LTGLTLFNNQITDIDPLKNLTNL---------NRLELSSNTISDISALSGLTSLQQLSFG 164

Query: 251 KNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSM 310
            N  +   P  L NL  L+ L++S N         +  + ++ESL  + N++    P  +
Sbjct: 165 -NQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--L 217

Query: 311 SSLSFLNHLNLSENDLSGQIPSSTQLQS 338
             L+ L+ L+L+ N L   I +   L +
Sbjct: 218 GILTNLDELSLNGNQLKD-IGTLASLTN 244

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.5 bits (240), Expect = 1e-21
 Identities = 63/339 (18%), Positives = 118/339 (34%), Gaps = 47/339 (13%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            +   N+ +   +P            +  LL+L++  +    I         + I  L +
Sbjct: 55  IVTFKNSTMR-KLPAALLDSFR----QVELLNLNDLQIE--EIDTYAFAYAHT-IQKLYM 106

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRNNRLAGIFPV 119
             N      P  + N P L VL L+ N  + +LP  I      L +L + NN L  I   
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD 165

Query: 120 SLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179
           + +  +SL +L +  N     +        P L   N+  N  +      L     +  L
Sbjct: 166 TFQATTSLQNLQLSSNR-LTHVDL---SLIPSLFHANVSYNLLS-----TLAIPIAVEEL 216

Query: 180 DVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYN 238
           D +HN+++  +         +  +    N      + +    +V          + + YN
Sbjct: 217 DASHNSIN-VVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVE---------VDLSYN 264

Query: 239 SI----------LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN 288
            +          +  +  + IS N     + +    +  L+ L+LSHN  +  +  N   
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 322

Query: 289 MRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
              +E+L    N +   +    S+   L +L LS ND  
Sbjct: 323 FDRLENLYLDHNSI-VTLKL--STHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.8 bits (220), Expect = 4e-19
 Identities = 59/328 (17%), Positives = 118/328 (35%), Gaps = 29/328 (8%)

Query: 33  LSNNALSGSIIHLICNGDNKSVIISLK-LSKNYFSGDIPDCWMNW--PHLQVLNLDDNYF 89
              N          C   N         +  +  + D+   + +    + +++   ++  
Sbjct: 5   QRYNVKP-RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 90  TGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERF 149
                  + +   +  L+L + ++  I   +     ++  L +G N     +P  V +  
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV 122

Query: 150 PRLLILNLRSNKFNGSLPVQL-CHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSN 207
           P L +L L  N  + SLP  +  +   L  L +++NNL           T++  +  SSN
Sbjct: 123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 208 Q---------KNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNL-------VRSIDISK 251
           +          +  +  V+   +      +  + L   +NSI  +       +  + +  
Sbjct: 182 RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 241

Query: 252 NNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSIESLDFSTNRLFGRIPQSM 310
           NN + +    L N  GL  ++LS+N    KI  +    M+ +E L  S NRL   +    
Sbjct: 242 NNLT-DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLYG 297

Query: 311 SSLSFLNHLNLSENDLSGQIPSSTQLQS 338
             +  L  L+LS N L     +  Q   
Sbjct: 298 QPIPTLKVLDLSHNHLLHVERNQPQFDR 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.7 bits (238), Expect = 2e-21
 Identities = 63/339 (18%), Positives = 118/339 (34%), Gaps = 81/339 (23%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG----LLDLSNNALSGSIIHLICNGDNKSVII 56
            LN+  + +  +            P         L + +N L+ S+  L         + 
Sbjct: 44  VLNVGESGLTTL------------PDCLPAHITTLVIPDNNLT-SLPALPPE------LR 84

Query: 57  SLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGI 116
           +L++S N  +  +P        L + +    +    LP      S L  L +  N+L  +
Sbjct: 85  TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALP------SGLCKLWIFGNQLTSL 136

Query: 117 FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL 176
            PV       L  L + +N    S+P         L  L   +N+   SLP+    L   
Sbjct: 137 -PVLPPG---LQELSVSDN-QLASLPALPS----ELCKLWAYNNQLT-SLPMLPSGLQ-- 184

Query: 177 RILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVE 236
             L V+ N L+ ++P   +    +     +N+  ++                        
Sbjct: 185 -ELSVSDNQLA-SLPTLPSELYKLWA--YNNRLTSL------------------------ 216

Query: 237 YNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLD 296
                 L + + +S N  +  +P+  +    L+ L +S N     +P     +    SL 
Sbjct: 217 PALPSGL-KELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPSGLL---SLS 267

Query: 297 FSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQ 335
              N+L  R+P+S+  LS    +NL  N LS +   + +
Sbjct: 268 VYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALR 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.9 bits (215), Expect = 2e-18
 Identities = 53/282 (18%), Positives = 91/282 (32%), Gaps = 80/282 (28%)

Query: 57  SLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGI 116
            L + ++  +  +PDC     H+  L + DN  T +LP        LR+L +  N+L  +
Sbjct: 44  VLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLTSL 96

Query: 117 FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL 176
            PV       L             +P         L  L +  N+   SLPV    L  L
Sbjct: 97  -PVLPPGLLELSIFSNPLT----HLPALPSG----LCKLWIFGNQLT-SLPVLPPGLQEL 146

Query: 177 RILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVE 236
               V+ N L+ ++P   +                                         
Sbjct: 147 ---SVSDNQLA-SLPALPSE---------------------------------------- 162

Query: 237 YNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLD 296
                  +  +    N  +  +PM  + L   Q L++S N     +P     +  + + +
Sbjct: 163 -------LCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKLWAYN 210

Query: 297 FSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQS 338
              NRL   +P   S L     L +S N L+      ++L+ 
Sbjct: 211 ---NRL-TSLPALPSGLK---ELIVSGNRLTSLPVLPSELKE 245

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.9 bits (202), Expect = 7e-17
 Identities = 51/237 (21%), Positives = 79/237 (33%), Gaps = 50/237 (21%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           +L +  NQ+           LP  P     L +S+N L+ S+  L         +  L  
Sbjct: 125 KLWIFGNQL---------TSLPVLPPGLQELSVSDNQLA-SLPALPSE------LCKLWA 168

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTL-----------------SSL 103
             N  +  +P        LQ L++ DN    +LP     L                 S L
Sbjct: 169 YNNQLT-SLPM---LPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGL 223

Query: 104 RSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN 163
           + L +  NRL  + PV     S L  L +  N    S+P         LL L++  N+  
Sbjct: 224 KELIVSGNRLTSL-PVLP---SELKELMVSGN-RLTSLPMLPS----GLLSLSVYRNQLT 274

Query: 164 GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGN 220
             LP  L HL+    +++  N LS    + +   T+      S              
Sbjct: 275 -RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA--PGYSGPIIRFDMAGASAP 328

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 36/180 (20%), Positives = 58/180 (32%), Gaps = 21/180 (11%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           +L   NN++           LP  P     L +S N L+ S+  L         +  L +
Sbjct: 205 KLWAYNNRL---------TSLPALPSGLKELIVSGNRLT-SLPVLPSE------LKELMV 248

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           S N  +  +P        L  L++  N  T  LP S+  LSS  +++L  N L+     +
Sbjct: 249 SGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
           L+  +S          F  +  +   E     L             P            D
Sbjct: 304 LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQED 363

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTN 300
            N    +++ ++  +  +P  L     + TL +  N     +P     +R+   L+ S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRT---LEVSGN 91

Query: 301 RLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQL 336
           +L   +P     L  L+  +     L        +L
Sbjct: 92  QL-TSLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 260 MQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHL 319
           M+     G   LN+  +     +P+ +     I +L    N L   +P   +    L  L
Sbjct: 34  MRACLNNGNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNL-TSLP---ALPPELRTL 86

Query: 320 NLSENDLSGQIPSS-TQLQSFGASCFSGNDL 349
            +S N L+  +P     L            L
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHL 116

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.8 bits (236), Expect = 4e-21
 Identities = 57/361 (15%), Positives = 115/361 (31%), Gaps = 49/361 (13%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALSGSIIHLICNGDNKSVI 55
            L+LS+N +           L    F   L     L+L  N      +  +        +
Sbjct: 78  HLDLSDNHLSS---------LSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTN--L 125

Query: 56  ISLKLSKNYFSGDIPDCW-MNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
            +L++       +I          L  L +           S+ ++  +  L L  +  A
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNG---------- 164
            +  +     SS+  L++ + +                  +   + + +           
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 165 SLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSN-QKNAIY--YFVTRGNI 221
            L   +  L+ +   D   N L    P   +  + +  + +   ++  I   Y     + 
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 222 VFEDASVVTKGLLVEYNSILNL----------VRSIDISKNNFSGEIPMQ---LTNLEGL 268
           V+     V + + VE + +  +          +  +D+S+N    E             L
Sbjct: 305 VYSLLEKVKR-ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 269 QTLNLSHNFF--VGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDL 326
           QTL LS N    + K  E +  ++++ SLD S N     +P S      +  LNLS   +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGI 422

Query: 327 S 327
            
Sbjct: 423 R 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.0 bits (234), Expect = 7e-21
 Identities = 54/337 (16%), Positives = 108/337 (32%), Gaps = 26/337 (7%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEF----GLLDLSNNALSGSIIHLICNGDNKSVII 56
            L L +++I           +    F        LDLS+N LS           +   + 
Sbjct: 54  VLILKSSRI---------NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS---LK 101

Query: 57  SLKLSKNYFSG-DIPDCWMNWPHLQVLNLDDNYFTGNLP-ISIGTLSSLRSLHLRNNRLA 114
            L L  N +    +   + N  +LQ L + +      +  I    L+SL  L ++   L 
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLT 174
                SLK+   +  L +  +     +     +    +  L LR           L    
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

Query: 175 FLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLL 234
               +       S       N    +        +         G   F  +       L
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280

Query: 235 VEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIG-NMRSIE 293
            +  + + + R + I +     ++    + LE ++ + + ++     +P +   +++S+E
Sbjct: 281 GKVET-VTI-RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLE 337

Query: 294 SLDFSTNRLFGRIPQSMSS---LSFLNHLNLSENDLS 327
            LD S N +     ++ +       L  L LS+N L 
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.2 bits (224), Expect = 1e-19
 Identities = 46/334 (13%), Positives = 111/334 (33%), Gaps = 32/334 (9%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
           LDLS N ++      +    N   +  L L  +  +    D + +   L+ L+L DN+ +
Sbjct: 31  LDLSFNKITYIGHGDLRACAN---LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 91  GNLPISIGTLSSLRSLHLRNNRLAGIFPVSL-KNCSSLISLDIGENDFFGSIPTWVGERF 149
                  G LSSL+ L+L  N    +   SL  N ++L +L IG  + F  I        
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 150 PRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN----- 204
             L  L +++          L  +  +  L +  +  +  +    +  +++  +      
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 205 --------------------SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLV 244
                                + + + +        +      +    +  +  ++  L 
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267

Query: 245 RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFG 304
                  +  S    ++      ++ L++   +    +      +  ++ +    +++F 
Sbjct: 268 DFNPSESDVVSELGKVETVT---IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 305 RIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQS 338
                   L  L  L+LSEN +  +   ++  + 
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 54/352 (15%), Positives = 102/352 (28%), Gaps = 67/352 (19%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L L  ++   ++  F       +  E    +L+    S   +  + +   K       L
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT-----------LSSLRSLHLR 109
           +   F+ ++         L  +  DD    G    +                ++R LH+ 
Sbjct: 236 TDESFN-ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 110 NNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ 169
              L             +  + +  +  F  +P    +    L  L+L  N         
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 170 ---LCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDA 226
                    L+ L ++ N+L  ++ +       +                          
Sbjct: 354 SACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTL-------------------------- 386

Query: 227 SVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI 286
                          NL  S+DIS+N F   +P      E ++ LNLS       +   I
Sbjct: 387 --------------KNL-TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI 429

Query: 287 GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQS 338
              +++E LD S N L       +  L     L +S N L   +P ++    
Sbjct: 430 --PQTLEVLDVSNNNL-DSFSLFLPRLQ---ELYISRNKLK-TLPDASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 5e-13
 Identities = 40/264 (15%), Positives = 83/264 (31%), Gaps = 48/264 (18%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
               V +     FT ++P  +   ++++SL L  N++  I    L+ C++L  L +  + 
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINN 196
              +I          L  L+L  N  +         L+ L+ L++  N    T+      
Sbjct: 62  -INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVT--- 116

Query: 197 FTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSG 256
                                    +F +               L  ++++ I       
Sbjct: 117 ------------------------SLFPN---------------LTNLQTLRIGNVETFS 137

Query: 257 EIPMQ-LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSF 315
           EI       L  L  L +          +++ ++R I  L    +     +      LS 
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 316 LNHLNLSENDLSGQIPSSTQLQSF 339
           + +L L + +L+    S   +   
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEV 221

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 42/258 (16%), Positives = 78/258 (30%), Gaps = 46/258 (17%)

Query: 30  LLDLSNNALSGSIIHLICNG--DNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDN 87
            + +    +    +    +        +  + +  +           +   L+ L+L +N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 88  YFTGNL---PISIGTLSSLRSLHLRNNRLAGIFPVS--LKNCSSLISLDIGENDFFGSIP 142
                        G   SL++L L  N L  +      L    +L SLDI  N F     
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF----- 399

Query: 143 TWVGERF---PRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTA 199
             + +      ++  LNL S      +    C    L +LDV++NNL  +          
Sbjct: 400 HPMPDSCQWPEKMRFLNLSSTGIR-VVK--TCIPQTLEVLDVSNNNLD-SFS---LFLPR 452

Query: 200 MATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEI 258
           +  +  S N+   +                          S+  ++  + IS+N      
Sbjct: 453 LQELYISRNKLKTL-----------------------PDASLFPVLLVMKISRNQLKSVP 489

Query: 259 PMQLTNLEGLQTLNLSHN 276
                 L  LQ + L  N
Sbjct: 490 DGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 36/249 (14%), Positives = 74/249 (29%), Gaps = 45/249 (18%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
             ++ L+L  N  T      +   ++L+ L L+++R+  I   +  +  SL  LD+ +N 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNG-SLPVQLCHLTFLRILDVAHNNLSGTIPRCIN 195
              S+ +        L  LNL  N +    +     +LT L+ L + +      I R   
Sbjct: 86  -LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR--- 141

Query: 196 NFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFS 255
                                    I F                 L  +  ++I   +  
Sbjct: 142 -------------------------IDFAG---------------LTSLNELEIKALSLR 161

Query: 256 GEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSF 315
                 L ++  +  L L  +     +      + S+  L+     L       +     
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221

Query: 316 LNHLNLSEN 324
            + +     
Sbjct: 222 SSPMKKLAF 230

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 34/205 (16%), Positives = 67/205 (32%), Gaps = 28/205 (13%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            + + N++++ V                  LDLS N +    +           + +L L
Sbjct: 314 RITVENSKVFLV-----PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 61  SKNYFS--GDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP 118
           S+N+        +  +   +L  L++  N F   +P S      +R L+L +  +  +  
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT 427

Query: 119 VSLKNC-----------------SSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK 161
              +                     L  L I  N    ++P      FP LL++ +  N+
Sbjct: 428 CIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASL--FPVLLVMKISRNQ 484

Query: 162 FNGSLPVQLCHLTFLRILDVAHNNL 186
                      LT L+ + +  N  
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 39/199 (19%), Positives = 70/199 (35%), Gaps = 33/199 (16%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEF-GL-----LDLSNNALSGSIIHLICNGDNKSV 54
            L LS N +           +         L     LD+S N      +   C    K  
Sbjct: 365 TLVLSQNHLRS---------MQKTGEILLTLKNLTSLDISRNTFH--PMPDSCQWPEK-- 411

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
           +  L LS       +  C      L+VL++ +N    +  +    L  L+ L++  N+L 
Sbjct: 412 MRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD-SFSLF---LPRLQELYISRNKLK 464

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLT 174
            +   SL     L+ + I  N    S+P  + +R   L  + L +N ++ S P     + 
Sbjct: 465 TLPDASL--FPVLLVMKISRNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP----RID 517

Query: 175 FLRILDVAHNNLSGTIPRC 193
           +L      ++       +C
Sbjct: 518 YLSRWLNKNSQKEQGSAKC 536

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.9 bits (231), Expect = 1e-20
 Identities = 64/288 (22%), Positives = 117/288 (40%), Gaps = 27/288 (9%)

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
              L L KN       D + ++PHL+ L L++N  +   P +   L +LR+L LR+NRL 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ-LCHL 173
            I        S+L  LDI EN     +  ++ +    L  L +  N     +  +    L
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGL 151

Query: 174 TFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKG 232
             L  L +   NL+      +++   +  +       NAI       +  F+    +   
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI------RDYSFKRLYRLKVL 205

Query: 233 LLVEYNSI----------LNLVRSIDISKNNFSGEIP-MQLTNLEGLQTLNLSHNFFVGK 281
            +  +  +          LNL  S+ I+  N +  +P + + +L  L+ LNLS+N     
Sbjct: 206 EISHWPYLDTMTPNCLYGLNL-TSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-T 262

Query: 282 IPENI-GNMRSIESLDFSTNRLFGRIPQSM-SSLSFLNHLNLSENDLS 327
           I  ++   +  ++ +     +L   +       L++L  LN+S N L+
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 64/336 (19%), Positives = 111/336 (33%), Gaps = 71/336 (21%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALSGSIIHLICNG--DNKS 53
           EL L+ N +           +    F   L     L L +N L      LI  G     S
Sbjct: 60  ELELNENIV---------SAVEPGAFN-NLFNLRTLGLRSNRLK-----LIPLGVFTGLS 104

Query: 54  VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRL 113
            +  L +S+N     +   + +  +L+ L + DN        +   L+SL  L L    L
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164

Query: 114 AGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHL 173
             I   +L +   LI L +   +   +I  +  +R  RL +L +    +  ++     + 
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 174 TFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGL 233
             L  L + H NL+  +P                                          
Sbjct: 224 LNLTSLSITHCNLT-AVPYL----------------------------AVRH-------- 246

Query: 234 LVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSI 292
                  L  +R +++S N  S      L  L  LQ + L     +  +       +  +
Sbjct: 247 -------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYL 298

Query: 293 ESLDFSTNRLFGRIPQSM-SSLSFLNHLNLSENDLS 327
             L+ S N+L   + +S+  S+  L  L L  N L+
Sbjct: 299 RVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.2 bits (211), Expect = 5e-18
 Identities = 51/259 (19%), Positives = 90/259 (34%), Gaps = 24/259 (9%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
              ++L+L  N           +   L  L L  N ++ + P +  N  +L +L +  N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINN 196
               IP  V      L  L++  NK    L      L  L+ L+V  N+L     R  + 
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 197 FTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSG 256
             ++  +        +              + +    L    S L+ +  + +   N + 
Sbjct: 151 LNSLEQLTLEK--CNL--------------TSIPTEAL----SHLHGLIVLRLRHLNINA 190

Query: 257 EIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSM-SSLSF 315
                   L  L+ L +SH  ++  +  N     ++ SL  +   L   +P      L +
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVY 249

Query: 316 LNHLNLSENDLSGQIPSST 334
           L  LNLS N +S  I  S 
Sbjct: 250 LRFLNLSYNPIS-TIEGSM 267

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.9 bits (221), Expect = 2e-19
 Identities = 69/352 (19%), Positives = 122/352 (34%), Gaps = 70/352 (19%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALS------GSIIHLIC--NGDNK 52
           EL L+N  +           LP  P     L  S N+L+       S+  L+   N    
Sbjct: 75  ELELNNLGL---------SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 125

Query: 53  -----SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH 107
                 ++  L +S N     +P+   N   L+++++D+N     LP       SL  + 
Sbjct: 126 LSDLPPLLEYLGVSNNQLE-KLPELQ-NSSFLKIIDVDNNSLK-KLPDLPP---SLEFIA 179

Query: 108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP 167
             NN+L  +  +   N   L ++    N     +P    +    L  +   +N       
Sbjct: 180 AGNNQLEELPELQ--NLPFLTAIYADNNSL-KKLP----DLPLSLESIVAGNNIL--EEL 230

Query: 168 VQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDAS 227
            +L +L FL  +   +N L  T+P    +  A+      N    +            +  
Sbjct: 231 PELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNV--RDNYLTDL-----------PELP 276

Query: 228 VVTKGLLVEYNSILNL------VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGK 281
                L V  N    L      +  ++ S N     +     +LE    LN+S+N  + +
Sbjct: 277 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI-E 331

Query: 282 IPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS 333
           +P     +   E L  S N L   +P+   +L     L++  N L  + P  
Sbjct: 332 LPALPPRL---ERLIASFNHL-AEVPELPQNLK---QLHVEYNPLR-EFPDI 375

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 62/317 (19%), Positives = 106/317 (33%), Gaps = 64/317 (20%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSV----------IISLKLSKNYFSGDIPDCWMNWPHLQ 80
              + +    +           +V             L+L+    S  +P+     PHL+
Sbjct: 39  YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE---LPPHLE 94

Query: 81  VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGS 140
            L    N  T  LP    +L SL   +     L+ + P        L  L +  N     
Sbjct: 95  SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQL-EK 145

Query: 141 IPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAM 200
           +P    +    L I+++ +N     LP     L     +   +N L   +P  + N   +
Sbjct: 146 LPEL--QNSSFLKIIDVDNNSLK-KLPDLPPSLE---FIAAGNNQLE-ELP-ELQNLPFL 197

Query: 201 ATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIP 259
             I   +N                         L    +  L+L  SI    N    E+P
Sbjct: 198 TAIYADNNS------------------------LKKLPDLPLSL-ESIVAGNNILE-ELP 231

Query: 260 MQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHL 319
            +L NL  L T+   +N     +P+   +   +E+L+   N L   +P+   SL+FL+  
Sbjct: 232 -ELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYL-TDLPELPQSLTFLDVS 285

Query: 320 NLSENDLSGQIPSSTQL 336
               + LS   P+   L
Sbjct: 286 ENIFSGLSELPPNLYYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 62/331 (18%), Positives = 108/331 (32%), Gaps = 80/331 (24%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            +   NN +         + LP  P     +   NN L    +  + N      + ++  
Sbjct: 199 AIYADNNSL---------KKLPDLPLSLESIVAGNNILE--ELPELQNLPF---LTTIYA 244

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
             N     +PD     P L+ LN+ DNY T +LP    +L+ L       + L+ + P  
Sbjct: 245 DNNLLK-TLPD---LPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-- 297

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
                +L  L+   N+   S+     +  P L  LN+ +NK    LP     L     L 
Sbjct: 298 -----NLYYLNASSNEI-RSLC----DLPPSLEELNVSNNKLI-ELPALPPRLE---RLI 343

Query: 181 VAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI 240
            + N+L+  +P    N                                    L VEYN +
Sbjct: 344 ASFNHLA-EVPELPQNLKQ---------------------------------LHVEYNPL 369

Query: 241 LNLVRSI----DISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLD 296
                      D+  N+   E+P    NL   + L++  N    + P+   +   +E L 
Sbjct: 370 REFPDIPESVEDLRMNSHLAEVPELPQNL---KQLHVETNPLR-EFPDIPES---VEDLR 422

Query: 297 FSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
            ++ R+      +  +   L       +   
Sbjct: 423 MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 42/269 (15%), Positives = 86/269 (31%), Gaps = 50/269 (18%)

Query: 78  HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDF 137
            LQ      +  T  +P+    + S    +   +      P        +    + +   
Sbjct: 12  FLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-- 68

Query: 138 FGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNF 197
                        +   L L +   + SLP    HL     L  + N+L+  +P    + 
Sbjct: 69  ----------LDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSL 113

Query: 198 TAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNL--------VRSIDI 249
            ++   N  N   A+                  + L V  N +  L        ++ ID+
Sbjct: 114 KSLLVDN--NNLKALSDLPPL-----------LEYLGVSNNQLEKLPELQNSSFLKIIDV 160

Query: 250 SKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQS 309
             N+   ++P    +   L+ +   +N    ++PE + N+  + ++    N L  ++P  
Sbjct: 161 DNNSLK-KLPDLPPS---LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSL-KKLPDL 213

Query: 310 MSSLSFLNHLNLSENDLSGQIPSSTQLQS 338
             SL     +    N L  ++P    L  
Sbjct: 214 PLSLE---SIVAGNNILE-ELPELQNLPF 238

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 20/135 (14%)

Query: 233 LLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN---- 288
            +   N     ++      +N + E+P++  N++       + + +    P   G     
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 289 ---------MRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQS 338
                     R    L+ +   L   +P+       L  L  S N L+ ++P     L+S
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQSLKS 115

Query: 339 FGASCFSGNDLCGAP 353
                 +   L   P
Sbjct: 116 LLVDNNNLKALSDLP 130

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 4e-19
 Identities = 63/364 (17%), Positives = 119/364 (32%), Gaps = 61/364 (16%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L+LS N +  +      +P  ++      L L NN  S +++     G     +  L L
Sbjct: 181 SLDLSLNPMNFI------QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 61  SKNYFSGDI----PDCWMNWPHLQVLNLDDNY---FTGNLPISIGTLSSLRSLHLRNNRL 113
            +    G++            +L +      Y   +  ++      L+++ S  L +  +
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 114 ----AGIFPVSLK---------------NCSSLISLDIGENDFFGSIPTWVGERFPRLLI 154
                  +    +                  SL  L    N   G+  + V    P L  
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG-GNAFSEVD--LPSLEF 351

Query: 155 LNLRSNKFN--GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNA 211
           L+L  N  +  G         T L+ LD++ N +  T+         +  ++   +    
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTL 271
           +  F    +                    L  +  +DIS  +           L  L+ L
Sbjct: 411 MSEFSVFLS--------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 272 NLSHNFFVGKIPENI-GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQI 330
            ++ N F      +I   +R++  LD S  +L    P + +SLS L  LN++ N L   +
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SV 509

Query: 331 PSST 334
           P   
Sbjct: 510 PDGI 513

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.1 bits (203), Expect = 6e-17
 Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 11/210 (5%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L  ++N+        D   L +       LDLS N LS        +    S +  L L
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEF-------LDLSRNGLSFKGCCSQSDFGTTS-LKYLDL 380

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRNNRLAGIFPV 119
           S N     +   ++    L+ L+   +        S+  +L +L  L + +      F  
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 120 SLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179
                SSL  L +  N F  +    +      L  L+L   +     P     L+ L++L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 180 DVAHNNLSGTIPRCINNFTAMATIN-SSNQ 208
           ++A N L        +  T++  I   +N 
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 71/384 (18%), Positives = 128/384 (33%), Gaps = 61/384 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L+LS N +   +  +     P    E  +LDLS   +         +  +   + +L L
Sbjct: 32  NLDLSFNPL-RHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSH---LSTLIL 83

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGI-FPV 119
           + N         +     LQ L   +          IG L +L+ L++ +N +     P 
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 120 SLKNCSSLISLDIGENDFFGSIPTWVGERFPRL----LILNLRSNKFNGSLPVQLCHLTF 175
              N ++L  LD+  N    SI         ++    L L+L  N  N  +         
Sbjct: 144 YFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 176 LRILDVAHNNLSGTIPR-----------------CINNFTAMATINSS------------ 206
           L  L + +N  S  + +                    N   +   + S            
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 207 NQKNAIYYFVTRGNIVFEDASVVTKGLL-------VEYNSILNLVRSIDISKNNFSGEIP 259
            +   + Y++     +F   + V+   L       V+  S     + +++    F     
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 260 MQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRL--FGRIPQSMSSLSFLN 317
           ++L +   L+ L  + N       E   ++ S+E LD S N L   G   QS    + L 
Sbjct: 322 LKLKS---LKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 318 HLNLSEN---DLSGQIPSSTQLQS 338
           +L+LS N    +S       QL+ 
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEH 400

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 6e-16
 Identities = 51/256 (19%), Positives = 88/256 (34%), Gaps = 23/256 (8%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
              + L+L  N        S  +   L+ L L    +  I   + ++ S L +L +  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL-SGTIPRCIN 195
              S+          L  L              + HL  L+ L+VAHN + S  +P   +
Sbjct: 88  -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 196 NFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFS 255
           N T +  ++ S+  N I                +    L   + +  L  S+D+S N  +
Sbjct: 147 NLTNLEHLDLSS--NKI--------------QSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 256 GEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN---MRSIESLDFSTNRLFGRIPQ-SMS 311
             I         L  L L +NF    + +          +  L     R  G + +   S
Sbjct: 191 -FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 312 SLSFLNHLNLSENDLS 327
           +L  L +L + E  L+
Sbjct: 250 ALEGLCNLTIEEFRLA 265

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.1 bits (177), Expect = 9e-14
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 12/169 (7%)

Query: 1   ELNLSNNQIYGVIPYFDHRP-LPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLK 59
            L+LS N +  +   F     L +       LD  ++ L   +         ++ +I L 
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEH-------LDFQHSNLK-QMSEFSVFLSLRN-LIYLD 427

Query: 60  LSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNL-PISIGTLSSLRSLHLRNNRLAGIFP 118
           +S  +        +     L+VL +  N F  N  P     L +L  L L   +L  + P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 119 VSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP 167
            +  + SSL  L++  N    S+P  + +R   L  + L +N ++ S P
Sbjct: 488 TAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.6 bits (209), Expect = 2e-18
 Identities = 55/284 (19%), Positives = 88/284 (30%), Gaps = 53/284 (18%)

Query: 55  IISLKLSKNYFSGDIPDC---WMNWPHLQVLNLDDNYFTGNLPISIG--TLSSLRSLHLR 109
           +  L +        I       +    LQ L L++   TG  P  +   T   L  L+LR
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 110 NNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ 169
           N   A                      +   +  W+    P L +L++           Q
Sbjct: 130 NVSWATRDA------------------WLAELQQWLK---PGLKVLSIAQAHSLNFSCEQ 168

Query: 170 LCHLTFLRILDVAHNNLSGTIP----RCINNFTAMATINSSNQKNAIYYFVTRGNIVFED 225
           +     L  LD++ N   G        C   F  +  +   N                E 
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-------------MET 215

Query: 226 ASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQL-TNLEGLQTLNLSHNFFVGKIPE 284
            S V   L     +    ++ +D+S N+               L +LNLS      ++P+
Sbjct: 216 PSGVCSALA----AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270

Query: 285 NIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG 328
            +     +  LD S NRL  R P S   L  + +L+L  N    
Sbjct: 271 GLP--AKLSVLDLSYNRL-DRNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.1 bits (187), Expect = 1e-15
 Identities = 41/196 (20%), Positives = 70/196 (35%), Gaps = 14/196 (7%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLI-CNGDNKSVIISLK 59
           EL L N ++ G  P      L     +  +L+L N + +     L       K  +  L 
Sbjct: 99  ELTLENLEVTGTAP---PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 60  LSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI----GTLSSLRSLHLRNNRLA- 114
           +++ +      +    +P L  L+L DN   G   +          +L+ L LRN  +  
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 115 --GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCH 172
             G+          L  LD+  N    +      +   +L  LNL        +P  L  
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-- 272

Query: 173 LTFLRILDVAHNNLSG 188
              L +LD+++N L  
Sbjct: 273 PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.1 bits (187), Expect = 2e-15
 Identities = 52/300 (17%), Positives = 90/300 (30%), Gaps = 46/300 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFG------LLDLSNNALSGSIIHLICNGDNKSV 54
           EL      +  ++   D      Q  +         L +    +   I+         S 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 55  IISLKLSKNYFSGDIPDCW--MNWPHLQVLNLDDNYFTGNLP----ISIGTLSSLRSLHL 108
           +  L L     +G  P        P L +LNL +  +         +       L+ L +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 109 RNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIP---TWVGERFPRLLILNLRSNKFN-- 163
                       ++   +L +LD+ +N   G           +FP L +L LR+      
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 164 -GSLPVQLCHLTFLRILDVAHNNLSGTIPRCI-NNFTAMATIN-SSNQKNAIYYFVTRGN 220
            G           L+ LD++HN+L         +  + + ++N S               
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG------------ 264

Query: 221 IVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVG 280
                   V KGL         L   +D+S N      P     L  +  L+L  N F+ 
Sbjct: 265 -----LKQVPKGLPA------KL-SVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 7e-10
 Identities = 49/264 (18%), Positives = 73/264 (27%), Gaps = 60/264 (22%)

Query: 80  QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLK---NCSSLISLDIGEND 136
            +L   D          I    SL+ L +R  R+              S L  L +   +
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 137 FFGSIP-TWVGERFPRLLILNLRSNKFNGSLP----VQLCHLTFLRILDVAHNNLSGTIP 191
             G+ P   +    P L ILNLR+  +         +Q      L++L +A  +      
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 192 RCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISK 251
             +  F A                                            + ++D+S 
Sbjct: 167 EQVRVFPA--------------------------------------------LSTLDLSD 182

Query: 252 NNFSGEIPMQLT----NLEGLQTLNLSHNFF---VGKIPENIGNMRSIESLDFSTNRLFG 304
           N   GE  +           LQ L L +       G           ++ LD S N L  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 305 RIPQSMSS-LSFLNHLNLSENDLS 327
                     S LN LNLS   L 
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 220 NIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIP----MQLTNLEGLQTLNLSH 275
            +  E+  V          +    +  +++   +++        +Q     GL+ L+++ 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 276 NFFVGKIPENIGNMRSIESLDFSTNRLFGRI-------PQSMSSLSFLNHLNLSENDLSG 328
              +    E +    ++ +LD S N   G         P    +L  L   N      SG
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 329 QIPSSTQLQS 338
              +    + 
Sbjct: 219 VCSALAAARV 228

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 53/274 (19%), Positives = 100/274 (36%), Gaps = 24/274 (8%)

Query: 57  SLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT---LSSLRSLHLRNNRL 113
           SL LS N  +           +LQ L L  N       I   +   L SL  L L  N L
Sbjct: 56  SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT---IEEDSFSSLGSLEHLDLSYNYL 112

Query: 114 AGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ-LCH 172
           + +     K  SSL  L++  N +     T +     +L IL + +      +  +    
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 173 LTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTK 231
           LTFL  L++  ++L    P+ + +   ++ +     Q   +        I  +  S V  
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL------LEIFVDVTSSVEC 226

Query: 232 GLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRS 291
            L +     L+     ++S    +      L      + + ++      ++ + +  +  
Sbjct: 227 -LELRDTD-LDTFHFSELSTGETNS-----LIKKFTFRNVKITDESLF-QVMKLLNQISG 278

Query: 292 IESLDFSTNRLFGRIPQSM-SSLSFLNHLNLSEN 324
           +  L+FS N+L   +P  +   L+ L  + L  N
Sbjct: 279 LLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 9e-11
 Identities = 31/204 (15%), Positives = 66/204 (32%), Gaps = 25/204 (12%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALSGSIIHLICNGDNKSVI 55
            L+LS N +           L    F+  L     L+L  N    ++            +
Sbjct: 104 HLDLSYNYL---------SNLSSSWFK-PLSSLTFLNLLGNPYK-TLGETSLFSHLTK-L 151

Query: 56  ISLKLSKNYFSGDIPD-CWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
             L++        I    +     L+ L +D +      P S+ ++ ++  L L   +  
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 115 GIFPVSLKNCSSLISLDIGENDF----FGSIPTWVGERFPRLLILNLRSNKFNG--SLPV 168
            +  + +   SS+  L++ + D     F  + T       +                +  
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

Query: 169 QLCHLTFLRILDVAHNNLSGTIPR 192
            L  ++ L  L+ + N L  ++P 
Sbjct: 272 LLNQISGLLELEFSRNQLK-SVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 37/227 (16%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALSGSIIHLICNG--DNKS 53
            L L++N I           +    F   L     LDLS N LS      + +      S
Sbjct: 80  ALVLTSNGI---------NTIEEDSFS-SLGSLEHLDLSYNYLS-----NLSSSWFKPLS 124

Query: 54  VIISLKLSKNYFSGDIPD--CWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRN 110
            +  L L  N +   + +   + +   LQ+L + +      +       L+ L  L +  
Sbjct: 125 SLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 111 NRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQL 170
           + L    P SLK+  ++  L +        +     +    +  L LR    +     +L
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 171 CHLTF--------LRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQ 208
                         R + +   +L   + + +N  + +  +  S NQ
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 52/255 (20%)

Query: 76  WPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN 135
           W    +  +       +   +  +          +  L  I P  L    ++ SLD+  N
Sbjct: 6   WMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSI-PSGL--TEAVKSLDLSNN 62

Query: 136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQL-CHLTFLRILDVAHNNLSGTIPRCI 194
                I     +R   L  L L SN  N ++       L  L  LD+++N LS       
Sbjct: 63  RI-TYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS------- 113

Query: 195 NNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNF 254
                   ++SS                F+  S              +L   +++  N +
Sbjct: 114 -------NLSSS---------------WFKPLS--------------SL-TFLNLLGNPY 136

Query: 255 SGEIPMQL-TNLEGLQTLNLSHNFFVGKIPENI-GNMRSIESLDFSTNRLFGRIPQSMSS 312
                  L ++L  LQ L + +     KI       +  +E L+   + L    P+S+ S
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 313 LSFLNHLNLSENDLS 327
           +  ++HL L      
Sbjct: 197 IQNVSHLILHMKQHI 211

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.8 bits (199), Expect = 2e-16
 Identities = 51/314 (16%), Positives = 98/314 (31%), Gaps = 62/314 (19%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
            +   N +SG+        D          ++N     + +C +N      L L+    +
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFSELQLNRLNLS 72

Query: 91  GNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP 150
            +LP ++     +  L +  N L  + P    +   L  LD  +N    ++P    E   
Sbjct: 73  -SLPDNLP--PQITVLEITQNALISL-PELPAS---LEYLDACDNRL-STLP----ELPA 120

Query: 151 RLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKN 210
            L  L++ +N+    LP     L     ++  +N L+  +P    +              
Sbjct: 121 SLKHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELPTSLEV----------- 164

Query: 211 AIYYFVTRGNIVFEDASVVTKGLLVEYNSI------LNLVRSIDISKNNFSG--EIPMQL 262
                                 L V  N +         + ++D+S N       +P++ 
Sbjct: 165 ----------------------LSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRN 202

Query: 263 TNL-EGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL 321
            +  E         N     IPENI ++    ++    N L  RI +S+S  +     + 
Sbjct: 203 HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

Query: 322 SENDLSGQIPSSTQ 335
                S        
Sbjct: 262 PRIYFSMSDGQQNT 275

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 57/319 (17%), Positives = 98/319 (30%), Gaps = 80/319 (25%)

Query: 51  NKSVIISLKLSKNYFSG---DIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH 107
           N +  +S     N  SG   D    W  W    +   + N     L   +  ++    L 
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQ 65

Query: 108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP 167
           L    L+ + P +L     +  L+I +N    S+P    E    L  L+   N+ + +LP
Sbjct: 66  LNRLNLSSL-PDNL--PPQITVLEITQNAL-ISLP----ELPASLEYLDACDNRLS-TLP 116

Query: 168 VQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDAS 227
                L   + LDV +N L+  +P                                    
Sbjct: 117 ELPASL---KHLDVDNNQLT-MLPELPAL------------------------------- 141

Query: 228 VVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIG 287
                           +  I+   N  +  +P   T+LE    L++ +N     +PE   
Sbjct: 142 ----------------LEYINADNNQLT-MLPELPTSLE---VLSVRNNQL-TFLPELPE 180

Query: 288 NMRSIESLDFSTNRLFGRIPQSMSSL----SFLNHLNLSENDLSGQIPSS-TQLQSFGAS 342
           ++    +LD STN L   +P                   EN ++  IP +   L      
Sbjct: 181 SLE---ALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235

Query: 343 CFSGNDLCGAPLPDCTEKN 361
               N L        +++ 
Sbjct: 236 ILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.5 bits (193), Expect = 9e-16
 Identities = 45/211 (21%), Positives = 77/211 (36%), Gaps = 33/211 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L ++ N +           LP  P     LD  +N LS ++  L  +      +  L +
Sbjct: 84  VLEITQNAL---------ISLPELPASLEYLDACDNRLS-TLPELPAS------LKHLDV 127

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
             N  +  +P+       L+ +N D+N  T  LP       SL  L +RNN+L  + P  
Sbjct: 128 DNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPT---SLEVLSVRNNQLTFL-PEL 178

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERF---PRLLILNLRSNKFNGSLPVQLCHLTFLR 177
            ++   L +LD+  N    S+P             +    R N+    +P  +  L    
Sbjct: 179 PES---LEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTC 233

Query: 178 ILDVAHNNLSGTIPRCINNFTAMATINSSNQ 208
            + +  N LS  I   ++  TA    +    
Sbjct: 234 TIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.2 bits (130), Expect = 5e-08
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 31/156 (19%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICN------GDNK-- 52
            L++ NNQ+           LP  P     ++  NN L+  +  L  +       +N+  
Sbjct: 124 HLDVDNNQL---------TMLPELPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLT 173

Query: 53  ---SVIISLK---LSKNYFSGDIPDCWMNWPHLQ----VLNLDDNYFTGNLPISIGTLSS 102
               +  SL+   +S N     +P   +   H +         +N  T ++P +I +L  
Sbjct: 174 FLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDP 231

Query: 103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFF 138
             ++ L +N L+     SL   ++      G   +F
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQ-PDYHGPRIYF 266

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 50/312 (16%), Positives = 100/312 (32%), Gaps = 55/312 (17%)

Query: 30  LLDLSNNALS----GSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLD 85
           LLDL NN ++    G   +L         + +L L  N  S   P  +     L+ L L 
Sbjct: 56  LLDLQNNKITEIKDGDFKNL-------KNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 86  DNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDF-FGSIPTW 144
            N       +      +L+ L +  N +  +        + +I +++G N      I   
Sbjct: 109 KNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 145 VGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN 204
             +   +L  + +       ++P  L     L  L +  N ++      +     +A + 
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 205 -SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLV--RSIDISKNNFSGEIPMQ 261
            S N  +A+                       +  S+ N    R + ++ N    ++P  
Sbjct: 223 LSFNSISAV-----------------------DNGSLANTPHLRELHLNNNKLV-KVPGG 258

Query: 262 LTNLEGLQTLNLSHNFFVGKIPEN-------IGNMRSIESLDFSTNRL-FGRIPQSM-SS 312
           L + + +Q + L +N     I  N            S   +   +N + +  I  S    
Sbjct: 259 LADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317

Query: 313 LSFLNHLNLSEN 324
           +     + L   
Sbjct: 318 VYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 55/290 (18%), Positives = 109/290 (37%), Gaps = 39/290 (13%)

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
              L L  N  +      + N  +L  L L +N  +   P +   L  L  L+L  N+L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKF-NGSLPVQ-LCH 172
            +     K    L  L + EN+    +   V     +++++ L +N   +  +       
Sbjct: 114 ELPEKMPKT---LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 173 LTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKG 232
           +  L  + +A  N++ TIP+      ++  ++     N I              + V   
Sbjct: 170 MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDG--NKI--------------TKVDAA 210

Query: 233 LLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI 292
            L   N++      + +S N+ S      L N   L+ L+L++N  V K+P  + + + I
Sbjct: 211 SLKGLNNL----AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265

Query: 293 ESLDFSTNRL-------FGRIPQSMSSLSFLNHLNLSENDLS-GQIPSST 334
           + +    N +       F   P   +  +  + ++L  N +   +I  ST
Sbjct: 266 QVVYLHNNNISAIGSNDF-CPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 48/267 (17%), Positives = 99/267 (37%), Gaps = 26/267 (9%)

Query: 78  HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDF 137
           HL+V+   D      +P  +        L L+NN++  I     KN  +L +L +  N  
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK- 87

Query: 138 FGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNF 197
              I         +L  L L  N+    LP ++     L+ L V  N ++  + +  + F
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRK--SVF 141

Query: 198 TAMATINSSN-QKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNL-------VRSIDI 249
             +  +       N +          F+    ++  + +   +I  +       +  + +
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSY-IRIADTNITTIPQGLPPSLTELHL 199

Query: 250 SKNNFSGEIPMQ-LTNLEGLQTLNLSHNFFVGKIPENI-GNMRSIESLDFSTNRLFGRIP 307
             N  + ++    L  L  L  L LS N  +  +      N   +  L  + N+L  ++P
Sbjct: 200 DGNKIT-KVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKL-VKVP 256

Query: 308 QSMSSLSFLNHLNLSENDLSGQIPSST 334
             ++   ++  + L  N++S  I S+ 
Sbjct: 257 GGLADHKYIQVVYLHNNNIS-AIGSND 282

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 43/285 (15%), Positives = 85/285 (29%), Gaps = 44/285 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALSGSIIHLICNGDNKSVI 55
            L L NN+I           +    F   L     L LS N L      +         +
Sbjct: 80  TLILINNKI---------SKISPGAFA-PLVKLERLYLSKNQLKELPEKMPKT------L 123

Query: 56  ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT---LSSLRSLHLRNNR 112
             L++ +N  +      +     + V+ L  N    +  I  G    +  L  + + +  
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTN 182

Query: 113 LAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCH 172
           +  I         SL  L +  N     +     +    L  L L  N  +      L +
Sbjct: 183 ITTIPQGLP---PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238

Query: 173 LTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTK 231
              LR L + +N L   +P  + +   +  +   +N  +AI              +  + 
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 232 GLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHN 276
            + +  N +    +  +I  + F          +     + L + 
Sbjct: 298 -VSLFSNPV----QYWEIQPSTFRC--------VYVRAAVQLGNY 329

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 9e-16
 Identities = 48/252 (19%), Positives = 85/252 (33%), Gaps = 30/252 (11%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
            + ++LNL +N        S   L  L  L L  N +  I   +    ++L +L++ +N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPR-CIN 195
              +IP        +L  L LR+N            +  LR LD+        I      
Sbjct: 124 -LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 196 NFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNF 254
             + +  +N +      I                          + L  +  +D+S N+ 
Sbjct: 183 GLSNLRYLNLAMCNLREIPNL-----------------------TPLIKLDELDLSGNHL 219

Query: 255 SGEIPMQ-LTNLEGLQTLNLSHNFFVGKIPEN-IGNMRSIESLDFSTNRLFGRIPQSMSS 312
           S  I       L  LQ L +  +     I  N   N++S+  ++ + N L        + 
Sbjct: 220 S-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

Query: 313 LSFLNHLNLSEN 324
           L  L  ++L  N
Sbjct: 278 LHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.8 bits (145), Expect = 7e-10
 Identities = 44/216 (20%), Positives = 72/216 (33%), Gaps = 49/216 (22%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALSGSIIHLICNGDNKSVI 55
            L LS N I         R +    F  GL     L+L +N L+                
Sbjct: 92  ILQLSRNHI---------RTIEIGAFN-GLANLNTLELFDNRLT---------------- 125

Query: 56  ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHL-RNNRL 113
               +    F             L+ L L +N    ++P      + SLR L L    RL
Sbjct: 126 ---TIPNGAFVYL--------SKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRL 173

Query: 114 AGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHL 173
           + I   + +  S+L  L++   +    IP        +L  L+L  N  +   P     L
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCN-LREIPNLTP--LIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 174 TFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQ 208
             L+ L +  + +        +N  ++  IN + N 
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 47/251 (18%), Positives = 83/251 (33%), Gaps = 28/251 (11%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
            + + LNL +N        +   L  L  L L  N +  I   +    +SL +L++ +N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCI-N 195
               IP+   E   +L  L LR+N            +  L  LD+        I      
Sbjct: 135 -LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 196 NFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNF 254
               +  +N        +                          + L  +  +++S N+F
Sbjct: 194 GLFNLKYLNLGMCNIKDMPNL-----------------------TPLVGLEELEMSGNHF 230

Query: 255 SGEIPMQLTNLEGLQTLNLSHNFFVGKIPEN-IGNMRSIESLDFSTNRLFGRIPQSMSSL 313
               P     L  L+ L + ++  V  I  N    + S+  L+ + N L        + L
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289

Query: 314 SFLNHLNLSEN 324
            +L  L+L  N
Sbjct: 290 RYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.4 bits (170), Expect = 5e-13
 Identities = 63/276 (22%), Positives = 94/276 (34%), Gaps = 61/276 (22%)

Query: 31  LDLSNNALSGSIIHLICNGD--NKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNY 88
           L+L  N      I +I      +   +  L+L +N         +     L  L L DN+
Sbjct: 80  LNLMENN-----IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 89  FTGNLPISIGT---LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWV 145
            T    I  G    LS LR L LRNN +  I   +     SL+ LD+GE      I    
Sbjct: 135 LTV---IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 146 GERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINS 205
            E    L  LNL        +P  L  L  L  L+++ N+    I     +F  ++++  
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRP--GSFHGLSSLKK 246

Query: 206 SNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL 265
                                      L V  + +        I +N F G        L
Sbjct: 247 ---------------------------LWVMNSQVSL------IERNAFDG--------L 265

Query: 266 EGLQTLNLSHNFFVGKIPENI-GNMRSIESLDFSTN 300
             L  LNL+HN     +P ++   +R +  L    N
Sbjct: 266 ASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 44/202 (21%), Positives = 72/202 (35%), Gaps = 31/202 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALS----GSIIHLICNGDN 51
            L L  N I         R +    F  GL     L+L +N L+    G+  +L      
Sbjct: 103 VLQLGRNSI---------RQIEVGAFN-GLASLNTLELFDNWLTVIPSGAFEYL------ 146

Query: 52  KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRN 110
            S +  L L  N         +   P L  L+L +      +       L +L+ L+L  
Sbjct: 147 -SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 111 NRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQL 170
             +  +   +L     L  L++  N  F  I          L  L + +++ +       
Sbjct: 206 CNIKDM--PNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262

Query: 171 CHLTFLRILDVAHNNLSGTIPR 192
             L  L  L++AHNNLS ++P 
Sbjct: 263 DGLASLVELNLAHNNLS-SLPH 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 29/189 (15%), Positives = 60/189 (31%), Gaps = 26/189 (13%)

Query: 140 SIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTA 199
            +P  +         LNL  N           HL  L +L +  N++        N   +
Sbjct: 68  EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124

Query: 200 MATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIP 259
           + T+   +  N +              +V+  G        L+ +R + +  N       
Sbjct: 125 LNTLELFD--NWL--------------TVIPSGAFEY----LSKLRELWLRNNPIESIPS 164

Query: 260 MQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNH 318
                +  L  L+L     +  I E     + +++ L+     +  +   +++ L  L  
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEE 222

Query: 319 LNLSENDLS 327
           L +S N   
Sbjct: 223 LEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 245 RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSIESLDFSTNRLF 303
           R +++ +NN          +L  L+ L L  N  + +I       + S+ +L+   N L 
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWL- 135

Query: 304 GRIPQSM-SSLSFLNHLNLSENDLSGQIPSST 334
             IP      LS L  L L  N +   IPS  
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 53/314 (16%), Positives = 95/314 (30%), Gaps = 60/314 (19%)

Query: 30  LLDLSNNALS----GSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLD 85
           LLDL NN +S         L         + +L L  N  S      +     LQ L + 
Sbjct: 58  LLDLQNNDISELRKDDFKGL-------QHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110

Query: 86  DNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWV 145
            N+      I     SSL  L + +NR+  +         ++  +++G N       +  
Sbjct: 111 KNHLVE---IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE---NSGF 164

Query: 146 GERF---PRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMAT 202
                   +L  L +   K    +P  L     L  L + HN +       +  ++ +  
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYR 221

Query: 203 IN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLV--RSIDISKNNFSGEIP 259
           +    NQ   I                       E  S+  L   R + +  N  S  +P
Sbjct: 222 LGLGHNQIRMI-----------------------ENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 260 MQLTNLEGLQTLNLSHNFFVGKIPENI-------GNMRSIESLDFSTNRL-FGRIPQSM- 310
             L +L+ LQ + L  N    K+  N                +    N + +  +  +  
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 311 SSLSFLNHLNLSEN 324
             ++    +     
Sbjct: 317 RCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 49/282 (17%), Positives = 87/282 (30%), Gaps = 56/282 (19%)

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
              L L  N  S    D +    HL  L L +N  +     +   L  L+ L++  N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKF-NGSLPVQLCHL 173
            I P    +   L+ L I +N     +P  V      +  + +  N   N          
Sbjct: 116 EIPPNLPSS---LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 174 TFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGL 233
             L  L ++   L+  IP+  +    +                                L
Sbjct: 172 LKLNYLRISEAKLT-GIPK--DLPETLNE------------------------------L 198

Query: 234 LVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSI 292
            +++N I        I   +              L  L L HN  +  I       + ++
Sbjct: 199 HLDHNKIQA------IELEDLLR--------YSKLYRLGLGHNQ-IRMIENGSLSFLPTL 243

Query: 293 ESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSST 334
             L    N+L  R+P  +  L  L  + L  N+++ ++  + 
Sbjct: 244 RELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 49/285 (17%), Positives = 85/285 (29%), Gaps = 45/285 (15%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALSGSIIHLICNGDNKSVI 55
            L L NN+I           +  + F   L     L +S N L       I      S +
Sbjct: 82  ALVLVNNKI---------SKIHEKAFS-PLRKLQKLYISKNHLV-----EIPPNLPSS-L 125

Query: 56  ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLS--SLRSLHLRNNRL 113
           + L++  N         +    ++  + +  N    N     G      L  L +   +L
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRISEAKL 184

Query: 114 AGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHL 173
            GI         +L  L +  N    +I      R+ +L  L L  N+        L  L
Sbjct: 185 TGIPKDLP---ETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 174 TFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKG 232
             LR L + +N LS  +P  + +   +  +   +N    +      G   F       K 
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV------GVNDFCPVGFGVKR 293

Query: 233 LLVEYNSI-LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHN 276
                 S+  N V   ++    F          +     +   + 
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRC--------VTDRLAIQFGNY 330

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 50/278 (17%), Positives = 89/278 (32%), Gaps = 55/278 (19%)

Query: 57  SLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT---LSSLRSLHLRNNRL 113
            L+L  N         +     L  L+L  N  +        +    +SL+ L L  N +
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLSFNGV 90

Query: 114 AGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHL 173
             +   +      L  LD   ++        V      L+ L++       +       L
Sbjct: 91  ITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

Query: 174 TFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGL 233
           + L +L +A N+         + FT +                                 
Sbjct: 150 SSLEVLKMAGNSFQENFLP--DIFTELR-------------------------------- 175

Query: 234 LVEYNSILNLVRSIDISKNNFSGEIPMQ-LTNLEGLQTLNLSHNFFVGKIPENI-GNMRS 291
                   NL   +D+S+     ++      +L  LQ LN+SHN F   +       + S
Sbjct: 176 --------NL-TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNS 224

Query: 292 IESLDFSTNRLFGRIPQSM--SSLSFLNHLNLSENDLS 327
           ++ LD+S N +     +       S L  LNL++ND +
Sbjct: 225 LQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 5e-14
 Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 20/193 (10%)

Query: 2   LNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALSGSIIHLICNGDNKSVII 56
           L L +N++         + LP+  F+  L     L LS+N LS        +    + + 
Sbjct: 33  LELESNKL---------QSLPHGVFD-KLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLK 81

Query: 57  SLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRNNRLAG 115
            L LS N     +   ++    L+ L+   +        S+  +L +L  L + +     
Sbjct: 82  YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 116 IFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ-LCHLT 174
            F       SSL  L +  N F  +    +      L  L+L   +    L       L+
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 199

Query: 175 FLRILDVAHNNLS 187
            L++L+++HNN  
Sbjct: 200 SLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 49/258 (18%), Positives = 85/258 (32%), Gaps = 52/258 (20%)

Query: 80  QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDF-F 138
             +  +    T ++P  I   SS   L L +N+L  +        + L  L +  N   F
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 139 GSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFT 198
               +        L  L+L  N    ++      L  L  LD  H+NL            
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK----------- 114

Query: 199 AMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEI 258
               ++  +              VF                 L  +  +DIS  +     
Sbjct: 115 ---QMSEFS--------------VFLS---------------LRNLIYLDISHTHTRVAF 142

Query: 259 PMQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSIESLDFSTNRLFGRIPQSM-SSLSFL 316
                 L  L+ L ++ N F      +I   +R++  LD S  +L  ++  +  +SLS L
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSL 201

Query: 317 NHLNLSENDLSGQIPSST 334
             LN+S N+    + +  
Sbjct: 202 QVLNMSHNNFF-SLDTFP 218

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 50/280 (17%), Positives = 86/280 (30%), Gaps = 60/280 (21%)

Query: 31  LDLSNNALSGSIIHLICNG--DNKSVIISLKLSKN--YFSGDIPDCWMNWPHLQVLNLDD 86
           L+L +N L       + +G  D  + +  L LS N   F G           L+ L+L  
Sbjct: 33  LELESNKLQ-----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 87  NYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSL-KNCSSLISLDIGENDFFGSIPTWV 145
           N     +  +   L  L  L  +++ L  +   S+  +  +LI LDI            +
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGI 145

Query: 146 GERFPRLLILNLRSNKFNGSLPVQ-LCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN 204
                 L +L +  N F  +        L  L  LD++   L   +              
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPT----------- 193

Query: 205 SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN 264
                             F                 L+ ++ +++S NNF          
Sbjct: 194 -----------------AFNS---------------LSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 265 LEGLQTLNLSHNFFVGKIPENI--GNMRSIESLDFSTNRL 302
           L  LQ L+ S N  +    +        S+  L+ + N  
Sbjct: 222 LNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 17/192 (8%)

Query: 1   ELNLSNNQIYGVIPYFDH-RPLPYQPFEFGLLDLSNNALSGSIIHLICNG--DNKSVIIS 57
            L+LS N +  +   F     L +       LD  ++ L      +       +   +I 
Sbjct: 82  YLDLSFNGVITMSSNFLGLEQLEH-------LDFQHSNLK----QMSEFSVFLSLRNLIY 130

Query: 58  LKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRNNRLAGI 116
           L +S  +        +     L+VL +  N F  N    I   L +L  L L   +L  +
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

Query: 117 FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHL-TF 175
            P +  + SSL  L++  N+ F S+ T+  +    L +L+   N    S   +L H  + 
Sbjct: 191 SPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249

Query: 176 LRILDVAHNNLS 187
           L  L++  N+ +
Sbjct: 250 LAFLNLTQNDFA 261

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 78/363 (21%), Positives = 120/363 (33%), Gaps = 48/363 (13%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            ++LS N I   +       L     +   L +        I +        S +I LKL
Sbjct: 34  YVDLSLNSI-AELNETSFSRLQ----DLQFLKVEQQTPGLVIRNNTF--RGLSSLIILKL 86

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT---LSSLRSLHLRNNRLAGIF 117
             N F       +    +L+VL L      G   +S      L+SL  L LR+N +  I 
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLDG-AVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 118 PVSL-KNCSSLISLDIGENDFFGSIP--TWVGERFPRLLILNLRSNKFNGSLPVQLC--- 171
           P S   N      LD+  N    SI     +  +     +L L S          L    
Sbjct: 146 PASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 172 -----HLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDA 226
                  T +  LD++ N    ++ +   +  A   I S    N+     + G+  F+D 
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 227 SVVTKGLLV---------EYNSI----------LNLVRSIDISKNNFSGEIPMQ-LTNLE 266
              T   L            + I             +  + +++N  + +I       L 
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLT 323

Query: 267 GLQTLNLSHNFFVGKIPENI-GNMRSIESLDFSTNRLFGRIPQSM-SSLSFLNHLNLSEN 324
            L  LNLS NF  G I   +  N+  +E LD S N +   +       L  L  L L  N
Sbjct: 324 HLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTN 381

Query: 325 DLS 327
            L 
Sbjct: 382 QLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 21/209 (10%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPF---EFGLLDLSNNALSGSIIHLICNGDNKSVIIS 57
            L LS+  +  +  Y+        PF       LDLS N    S+     +    + I S
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243

Query: 58  LKLSKNYFSG---------DIPDCW---MNWPHLQVLNLDDNYFTGNLPISI-GTLSSLR 104
           L LS +Y  G         D  +     +    ++  +L  +     L  S+    + L 
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLE 302

Query: 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNG 164
            L L  N +  I   +    + L+ L++ +N F GSI + + E   +L +L+L  N    
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHI-R 360

Query: 165 SLPVQL-CHLTFLRILDVAHNNLSGTIPR 192
           +L  Q    L  L+ L +  N L  ++P 
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLK-SVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 9e-11
 Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 22/280 (7%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPV-SLKNCSSLISLDIGEN 135
            H+  ++L  N        S   L  L+ L +       +    + +  SSLI L +  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 136 DFFGSIPTWVGERFPRLLILNLRSNKFNGS-LPVQL-CHLTFLRILDVAHNNLSGTIPRC 193
             F  + T        L +L L     +G+ L       LT L +L +  NN+    P  
Sbjct: 90  Q-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 194 I-NNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISK 251
              N      ++ + N+  +I         +          L +   ++       D+++
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSI-----CEEDLLNFQGKHFTLLRLSSITLQ------DMNE 197

Query: 252 NNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMS 311
                E          + TL+LS N F   + +   +  +   +          +  S  
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 312 SLSFLNHLNLSENDLSGQIP-----SSTQLQSFGASCFSG 346
             +F +  N +   L          S +++ +   S FS 
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 55/313 (17%), Positives = 100/313 (31%), Gaps = 53/313 (16%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L L +N I  + P      +      F +LDL+ N +  SI               L+L
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMR----RFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRL 187

Query: 61  SKNYFSGDIPDCWMNWP---------HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNN 111
           S      D+ + W+ W           +  L+L  N F  ++        +   +     
Sbjct: 188 SSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 112 RLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLC 171
             +     S    ++    D           T+ G     +   +L  +K   +L   + 
Sbjct: 247 SNSYNMGSSF-GHTNFKDPDNF---------TFKGLEASGVKTCDLSKSKIF-ALLKSVF 295

Query: 172 -HLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVV 229
            H T L  L +A N ++          T +  +N S N   +I   +             
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN---------- 345

Query: 230 TKGLLVEYNSILNLVRSIDISKNNFSGEIPMQL-TNLEGLQTLNLSHNFFVGKIPENI-G 287
                      L+ +  +D+S N+    +  Q    L  L+ L L  N     +P+ I  
Sbjct: 346 -----------LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392

Query: 288 NMRSIESLDFSTN 300
            + S++ +   TN
Sbjct: 393 RLTSLQKIWLHTN 405

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 46/251 (18%), Positives = 74/251 (29%), Gaps = 50/251 (19%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
              Q + L  N  +     S     +L  L L +N LA I   +    + L  LD+ +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ-LCHLTFLRILDVAHNNLSGTIPRCIN 195
              S+         RL  L+L        L       L  L+ L +  N L   +P    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDD-- 147

Query: 196 NFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFS 255
                                      F D               L  +  + +  N  S
Sbjct: 148 --------------------------TFRD---------------LGNLTHLFLHGNRIS 166

Query: 256 GEIPMQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSIESLDFSTNRLFGRIPQS-MSSL 313
                    L  L  L L  N     +  +   ++  + +L    N L   +P   ++ L
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPL 224

Query: 314 SFLNHLNLSEN 324
             L +L L++N
Sbjct: 225 RALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 43/196 (21%), Positives = 71/196 (36%), Gaps = 17/196 (8%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG--DNKSVIISL 58
            + L  N+I   +P    R           L L +N L+      I        +++  L
Sbjct: 36  RIFLHGNRI-SHVPAASFRACRNLTI----LWLHSNVLA-----RIDAAAFTGLALLEQL 85

Query: 59  KLSKNYFSGDIP-DCWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRNNRLAGI 116
            LS N     +    +     L  L+LD       L   +   L++L+ L+L++N L  +
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 117 FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL 176
              + ++  +L  L +  N    S+P         L  L L  N+     P     L  L
Sbjct: 145 PDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 177 RILDVAHNNLSGTIPR 192
             L +  NNLS  +P 
Sbjct: 204 MTLYLFANNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 41/230 (17%), Positives = 69/230 (30%), Gaps = 50/230 (21%)

Query: 101 SSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN 160
           ++ + + L  NR++ +   S + C +L  L +  N     I          L  L+L  N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDN 90

Query: 161 KFNGSLPVQ-LCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRG 219
               S+       L  L  L +    L   +                             
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPG-------------------------- 123

Query: 220 NIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ-LTNLEGLQTLNLSHNFF 278
             +F                 L  ++ + +  N     +P     +L  L  L L  N  
Sbjct: 124 --LFRG---------------LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI 165

Query: 279 VGKIPENI-GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
              +PE     + S++ L    NR+    P +   L  L  L L  N+LS
Sbjct: 166 S-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 35/201 (17%)

Query: 149 FPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQ 208
                 + L  N+ +            L IL +  N L+            +  ++ S+ 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD- 89

Query: 209 KNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ-LTNLEG 267
            NA    V      F                 L  + ++ + +     E+       L  
Sbjct: 90  -NAQLRSVDPA--TFHG---------------LGRLHTLHLDRCGLQ-ELGPGLFRGLAA 130

Query: 268 LQTLNLSHNFFVGKIPENI-GNMRSIESLDFSTNRLFGRIPQSM-SSLSFLNHLNLSEND 325
           LQ L L  N     +P++   ++ ++  L    NR+   +P+     L  L+ L L +N 
Sbjct: 131 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQN- 187

Query: 326 LSGQIPSSTQLQSFGASCFSG 346
                    ++       F  
Sbjct: 188 ---------RVAHVHPHAFRD 199

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 31/144 (21%), Positives = 47/144 (32%), Gaps = 26/144 (18%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL-----LDLSNNALS----GSIIHLICNGDN 51
            L+L    +         + L    F  GL     L L +NAL      +   L      
Sbjct: 109 TLHLDRCGL---------QELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDL------ 152

Query: 52  KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNN 111
              +  L L  N  S      +     L  L L  N      P +   L  L +L+L  N
Sbjct: 153 -GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 112 RLAGIFPVSLKNCSSLISLDIGEN 135
            L+ +   +L    +L  L + +N
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDN 235

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 55/381 (14%), Positives = 114/381 (29%), Gaps = 61/381 (16%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L+  N+ I  +        L         L  ++N ++   + L  N    + +  L  
Sbjct: 46  SLDCHNSSITDMTGIEKLTGLTK-------LICTSNNITT--LDLSQN----TNLTYLAC 92

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
             N  + ++         L  LN D N  T    + +     L  L+   N L  I    
Sbjct: 93  DSNKLT-NLDVT--PLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTEI---D 143

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
           + + + L  LD   N     +         +L  L+   NK      + +     L  L+
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDV---TPQTQLTTLDCSFNKITE---LDVSQNKLLNRLN 197

Query: 181 VAHNNLSGTIPRCINNFTAM----------ATINSSNQKNAIYYFVTRGNIVFEDASVVT 230
              NN++  +   +N    +            I+ +      Y+  +   +   D S ++
Sbjct: 198 CDTNNIT-KLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLS 254

Query: 231 K--GLLVEYNSILNL-------VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGK 281
           K   L      +L +       +            E+   +T+   L  L+         
Sbjct: 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAA----G 308

Query: 282 IPE-NIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFG 340
           I E ++     +  L  +   L   +   +S  + L  L+     +     S  ++ +  
Sbjct: 309 ITELDLSQNPKLVYLYLNNTEL-TELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIPALN 364

Query: 341 ASCFSGNDLCGAPLPDCTEKN 361
            +  +       P    T  +
Sbjct: 365 NNFEAEGQTITMPKETLTNNS 385

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 54/307 (17%), Positives = 100/307 (32%), Gaps = 54/307 (17%)

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
           + SL    +  + D+         L  L    N  T    + +   ++L  L   +N+L 
Sbjct: 44  LTSLDCHNSSIT-DMTGIE-KLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLT 98

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLT 174
            +    +   + L  L+   N     +      + P L  LN   N       + + H T
Sbjct: 99  NL---DVTPLTKLTYLNCDTNK-LTKLDV---SQNPLLTYLNCARNTLT---EIDVSHNT 148

Query: 175 FLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGL 233
            L  LD   N     +   +   T + T++ S N+   +                     
Sbjct: 149 QLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDV------------------- 187

Query: 234 LVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPE-NIGNMRSI 292
                S   L+  ++   NN + ++   L     L  L+ S N    K+ E ++  +  +
Sbjct: 188 -----SQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSN----KLTEIDVTPLTQL 235

Query: 293 ESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGA 352
              D S N L       +S+LS L  L+  + DL  +I  +   Q           +   
Sbjct: 236 TYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIKEL 291

Query: 353 PLPDCTE 359
            +   T+
Sbjct: 292 DVTHNTQ 298

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 54/330 (16%), Positives = 111/330 (33%), Gaps = 20/330 (6%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            LN+S N I   +   D   L     +  +L +S+N +   +   +        +  L L
Sbjct: 25  ILNISQNYI-SELWTSDILSLS----KLRILIISHNRIQ-YLDISVF--KFNQELEYLDL 76

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPIS--IGTLSSLRSLHLRNNRLAGIFP 118
           S N     I        +L+ L+L  N F   LPI    G +S L+ L L    L     
Sbjct: 77  SHNKLVK-ISCHPT--VNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSV 132

Query: 119 VSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRI 178
           + + + +    L +    +         E        +L            +  ++   +
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKED---PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 179 LDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYN 238
            ++  +N+   +     ++    +I +  Q N     +T  NI     S +    LV + 
Sbjct: 190 ANLELSNIKCVLEDNKCSY--FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 239 SILNL-VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDF 297
           ++    + ++ +       +     T+L+ L    +  + F            ++   +F
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 298 STNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
           + +          S +S   HL+ S N L+
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 6e-11
 Identities = 55/354 (15%), Positives = 115/354 (32%), Gaps = 42/354 (11%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L LS   +          P+ +      LL L            + + + +S+ I    
Sbjct: 119 FLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF-P 173

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDN------YFTGNLPISIGTLSSLRSLHLRNNRLA 114
           +   F   +        +L++ N+          +  ++   + T   L +L L N    
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 115 G---IFPVSLKNCSSLISLDIGENDFFG----SIPTWVGERFPRLLILNLRSNKFNGSLP 167
               I  + L   +++    I      G        + G     L I  + S+ F     
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 168 VQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDA 226
                 + + I +   +        C +  +    ++ S+N      +            
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC-------GH 346

Query: 227 SVVTKGLLVEYNSI------------LNLVRSIDISKNNF-SGEIPMQLTNLEGLQTLNL 273
               + L+++ N +            +  ++ +DIS+N+    E     +  + L +LN+
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 274 SHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
           S N     I   +     I+ LD  +N++   IP+ +  L  L  LN++ N L 
Sbjct: 407 SSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 63/342 (18%), Positives = 111/342 (32%), Gaps = 44/342 (12%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEF----GLLDLSNNALSGSIIHLICNGDNKSVII 56
            L +S+N+I         + L    F+F      LDLS+N L     H   N      + 
Sbjct: 49  ILIISHNRI---------QYLDISVFKFNQELEYLDLSHNKLVKISCHPTVN------LK 93

Query: 57  SLKLSKNYFSGDIPDCWM--NWPHLQVLNLDDNYFTGNLPISIGTLSSLR-SLHLRNNRL 113
            L LS N F   +P C    N   L+ L L   +   +  + I  L+  +  L L     
Sbjct: 94  HLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 114 AGIFPVSLKNCSSL-ISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNG------SL 166
               P  L++ ++  + +    N  F  I     +    L + N++    +       S+
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 167 PVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDA 226
             +L     L  L + +   +      I         +++    +I     +G + F D 
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW----HTTVWYFSISNVKLQGQLDFRDF 268

Query: 227 SVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI 286
                 L  +  SI  +        + F             +   N + +     +    
Sbjct: 269 DYSGTSL--KALSIHQV------VSDVFGFPQSYIYEIFSNMNIKNFTVS-GTRMVHMLC 319

Query: 287 -GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
              +     LDFS N L   + ++   L+ L  L L  N L 
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 45/281 (16%), Positives = 92/281 (32%), Gaps = 23/281 (8%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
               +LN+  NY +      I +LS LR L + +NR+  +     K    L  LD+  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ--LCHLTFLRILDVAHNNLSGTIPRCI 194
               I          L  L+L  N F+ +LP+     +++ L+ L ++  +L  +    I
Sbjct: 81  -LVKISC---HPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 195 NNFTAMATINSSNQKNAIYY-------------FVTRGNIVFEDASVVTKGLLVEYNSIL 241
            +      +    +                    +           +      V    + 
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNM---RSIESLDFS 298
           N+   ++ +K ++   I  +L     L  L L++          I  +    ++     S
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 299 TNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSF 339
             +L G++       S  +   LS + +   +    Q   +
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 67/375 (17%), Positives = 120/375 (32%), Gaps = 58/375 (15%)

Query: 1   ELNLSNNQI--YGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISL 58
            L+LS N      +   F +        +   L LS   L  S +  I + +   V++ L
Sbjct: 94  HLDLSFNAFDALPICKEFGNMS------QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147

Query: 59  KLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP 118
             +             N   L ++   +  F   L +S+ T+++L   +++         
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 119 VSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLL---------ILNLRSNKFNGSLPVQ 169
             L   + L +     N    +I T     F R+L           ++ + K  G L  +
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIET-TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 170 L-----CHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFE 224
                   L  L I  V  +            F+ M   N +                  
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT-------------- 312

Query: 225 DASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFF--VGKI 282
                 + + +   S ++    +D S N  +  +     +L  L+TL L  N    + KI
Sbjct: 313 ------RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 283 PENIGNMRSIESLDFSTNRL-FGRIPQSMSSLSFLNHLNLSENDLSGQIP---------- 331
            E    M+S++ LD S N + +       S    L  LN+S N L+  I           
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL 426

Query: 332 --SSTQLQSFGASCF 344
              S +++S      
Sbjct: 427 DLHSNKIKSIPKQVV 441

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 47/305 (15%), Positives = 96/305 (31%), Gaps = 62/305 (20%)

Query: 2   LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSV--IISLK 59
           +  + N    ++    H  + Y         +SN  L G +     +    S+  +   +
Sbjct: 230 IETTWNSFIRILQLVWHTTVWY-------FSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282

Query: 60  LSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPV 119
           +  + F       +  + ++ + N   +       +    +S    L   NN L      
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 120 SLKNCSSLISLDIGENDFFGSIPTWVG--ERFPRLLILNLRSNKFNGSLPVQLC-HLTFL 176
           +  + + L +L +  N     +        +   L  L++  N  +       C     L
Sbjct: 343 NCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 177 RILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVE 236
             L+++ N L+ TI RC+                                          
Sbjct: 402 LSLNMSSNILTDTIFRCL------------------------------------------ 419

Query: 237 YNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSIESL 295
                  ++ +D+  N     IP Q+  LE LQ LN++ N     +P+ I   + S++ +
Sbjct: 420 ----PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKI 473

Query: 296 DFSTN 300
              TN
Sbjct: 474 WLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 20/143 (13%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGL------LDLSNNALSGSIIHLICNGDNKSV 54
            L L  NQ+         + L               LD+S N++S       C       
Sbjct: 352 TLILQMNQL---------KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--SWTKS 400

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
           ++SL +S N  +  I  C    P ++VL+L  N    ++P  +  L +L+ L++ +N+L 
Sbjct: 401 LLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

Query: 115 GIFPVSLKNCSSLISLDIGENDF 137
            +        +SL  + +  N +
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 13/165 (7%)

Query: 1   ELNLSNNQIYGVIPY-FDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLK 59
            L+ SNN +   +     H        E   L L  N L   +  +         +  L 
Sbjct: 328 HLDFSNNLLTDTVFENCGHLT------ELETLILQMNQLK-ELSKIAEMTTQMKSLQQLD 380

Query: 60  LSKNYFSGDIPDCWMNWP-HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP 118
           +S+N  S D      +W   L  LN+  N  T  +   +     ++ L L +N++  I P
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSI-P 437

Query: 119 VSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN 163
             +    +L  L++  N    S+P  + +R   L  + L +N ++
Sbjct: 438 KQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 57/352 (16%), Positives = 120/352 (34%), Gaps = 42/352 (11%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L LS  +   +    D  P+ +      LLDL +  + G     +      + ++ L  
Sbjct: 150 FLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIP--NTTVLHLVF 203

Query: 61  SKNYFSGDIPDCWMNW-PHLQVLNLDDNYFTG----NLPISIGTLSSLRSLHLRNNRLAG 115
             N       +  +N   HLQ+ N+  N             +    +L ++ L++     
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 116 ---IFPVSLKNCSSLISLDIGENDFFGSI----PTWVGERFPRLLILNLRSNKFNGSLPV 168
              +          +  L+I        I     T+       L+I ++++  F  S   
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 169 QLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDAS 227
                  + I  ++ ++       C  + ++   +N + N      +             
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC-------STL 376

Query: 228 VVTKGLLVEYNSI------------LNLVRSIDISKNNF-SGEIPMQLTNLEGLQTLNLS 274
              + L+++ N +            ++ + ++D+S N+  S          E +  LNLS
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436

Query: 275 HNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDL 326
            N   G +   +     ++ LD   NR+   IP+ ++ L  L  LN++ N L
Sbjct: 437 SNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L L  N +                     LD+S N+L+       C       I+ L L
Sbjct: 381 TLILQRNGLKNFFKVALM---TKNMSSLETLDVSLNSLNSHAYDRTCAWAES--ILVLNL 435

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           S N  +G +  C    P ++VL+L +N    ++P  +  L +L+ L++ +N+L  +    
Sbjct: 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV 492

Query: 121 LKNCSSLISLDIGENDF 137
               +SL  + + +N +
Sbjct: 493 FDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 68/361 (18%), Positives = 111/361 (30%), Gaps = 37/361 (10%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEF----GLLDLSNNALSGSIIHLICNGDNKSVII 56
            L LS+N+I         R L +  F F      LD+S+N L     ++ C     + + 
Sbjct: 80  VLRLSHNRI---------RSLDFHVFLFNQDLEYLDVSHNRLQ----NISC--CPMASLR 124

Query: 57  SLKLSKNYFSGDIPDCWM--NWPHLQVLNLDDNYFTGNLPISIGTLS-SLRSLHLRNNRL 113
            L LS N F   +P C    N   L  L L    F     + +  L  S   L L +  +
Sbjct: 125 HLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 114 AGIFPVSLKN-CSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCH 172
            G    SL+   ++++ L    N  F      V      L  L L + K N     +L  
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQ---VNMSVNALGHLQLSNIKLNDENCQRLMT 240

Query: 173 LTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKG 232
                       N+  T+      +     +        + Y       + E    + + 
Sbjct: 241 FLSELTRGPTLLNV--TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE---RIDRE 295

Query: 233 LLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRS 291
                 + L  +    +    F        +    +    LS +     I      +  S
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSS 354

Query: 292 IESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEN---DLSGQIPSSTQLQSFGASCFSGND 348
              L+F+ N     + Q  S+L  L  L L  N   +       +  + S      S N 
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 349 L 349
           L
Sbjct: 415 L 415

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 48/281 (17%), Positives = 94/281 (33%), Gaps = 38/281 (13%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPH-----LQVLNLD 85
           + L +   +      +        +  L +     +  I      +       L + ++ 
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313

Query: 86  DNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWV 145
           +  F  +        + +    L  +    I  V   + SS   L+  +N F        
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQG 372

Query: 146 GERFPRLLILNLRSNKFNGSLPV---QLCHLTFLRILDVAHNNL-SGTIPRCINNFTAMA 201
                RL  L L+ N    +         +++ L  LDV+ N+L S    R      ++ 
Sbjct: 373 CSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 202 TIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPM 260
            +N SSN        +T    VF                +   V+ +D+  N     IP 
Sbjct: 432 VLNLSSNM-------LTGS--VFR--------------CLPPKVKVLDLHNNRIM-SIPK 467

Query: 261 QLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSIESLDFSTN 300
            +T+L+ LQ LN++ N     +P+ +   + S++ +    N
Sbjct: 468 DVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 51/280 (18%), Positives = 96/280 (34%), Gaps = 23/280 (8%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
           P  + L+L  N  +      I  LS LR L L +NR+  +          L  LD+  N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLC--HLTFLRILDVAHNNLSGTIPRCI 194
              +I          L  L+L  N F+  LPV     +LT L  L ++       +    
Sbjct: 112 -LQNISC---CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLP 165

Query: 195 NNFTAMATINSSNQKNAIYYFVTRG---------NIVFEDASVVTKGLLVEYNSILNL-V 244
                ++ I        I    T           ++VF   S+ +  + +  N++ +L +
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 245 RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNM-----RSIESLDFST 299
            +I ++  N    +        G   LN++          ++        R +E L+   
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 300 NRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSF 339
             +  RI +   + S     +L    +  Q+   ++   +
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 5e-11
 Identities = 49/320 (15%), Positives = 89/320 (27%), Gaps = 35/320 (10%)

Query: 13  IPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDC 72
           +     RPL        LL + + A            +  S +    L     +  +P  
Sbjct: 257 LSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQH 316

Query: 73  WMNWPHLQVLNLDD----NYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLI 128
                     +  +                T   L    L   +   +    L++C  L 
Sbjct: 317 TFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQ 375

Query: 129 SLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSG 188
            L+        +            +IL +R+          L + + L+ +D        
Sbjct: 376 ELEPENKWCLLT------------IILLMRALDPLLYEKETLQYFSTLKAVD-------- 415

Query: 189 TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSID 248
             P        + +            +     +      +      + +   L LV  +D
Sbjct: 416 --PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV----LCHLEQLLLVTHLD 469

Query: 249 ISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFG-RIP 307
           +S N     +P  L  L  L+ L  S N    +  + + N+  ++ L    NRL      
Sbjct: 470 LSHNRLR-ALPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAAI 526

Query: 308 QSMSSLSFLNHLNLSENDLS 327
           Q + S   L  LNL  N L 
Sbjct: 527 QPLVSCPRLVLLNLQGNSLC 546

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.7 bits (149), Expect = 2e-10
 Identities = 49/283 (17%), Positives = 93/283 (32%), Gaps = 43/283 (15%)

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
            I   L K   +  +         +  +  +++    ++   I  L ++  L L  N+L 
Sbjct: 23  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT 78

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNKFNGSLPVQLCHL 173
            I P  L N  +L  L + EN     I      +   +L  L+L  N  +  +   L HL
Sbjct: 79  DIKP--LTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGIS-DING-LVHL 130

Query: 174 TFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKG 232
             L  L + +N ++      ++  T + T++   NQ + I        +         + 
Sbjct: 131 PQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKL---------QN 179

Query: 233 LLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI 292
           L +  N I       D+            L  L+ L  L L     + K   +  N+   
Sbjct: 180 LYLSKNHI------SDLR----------ALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

Query: 293 ESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQ 335
            ++  +   L    P+ +S        N+  +        S  
Sbjct: 224 NTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.4 bits (138), Expect = 4e-09
 Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 43/228 (18%)

Query: 103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKF 162
           +      +  +  IFP      +  I  ++ +     ++          +  +   ++  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDI 55

Query: 163 NGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNI 221
                +Q  +L  +  L +  N L+   P  + N   +  +    N+   +         
Sbjct: 56  KSVQGIQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--------- 102

Query: 222 VFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGK 281
                      L       L  ++S+ +  N  S +I   L +L  L++L L +N    K
Sbjct: 103 ---------SSL-----KDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNN----K 142

Query: 282 I--PENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
           I     +  +  +++L    N++       ++ L+ L +L LS+N +S
Sbjct: 143 ITDITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 8e-09
 Identities = 44/218 (20%), Positives = 78/218 (35%), Gaps = 25/218 (11%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           +L L+ N++  + P  + + L +       L L  N      I  + +  +   + SL L
Sbjct: 69  KLFLNGNKLTDIKPLTNLKNLGW-------LFLDENK-----IKDLSSLKDLKKLKSLSL 116

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
             N  S DI     + P L+ L L +N  T      +  L+ L +L L +N+++ I P  
Sbjct: 117 EHNGIS-DINGLV-HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-- 170

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179
           L   + L +L + +N     I           L +L L S +          +L     +
Sbjct: 171 LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 180 DVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVT 217
                +L    P  I++       N           V+
Sbjct: 227 KNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVS 262

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 52/267 (19%), Positives = 92/267 (34%), Gaps = 28/267 (10%)

Query: 1   ELNLSNNQIYGV--IPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISL 58
           ++  +N+ I  V  I Y  +  +         L L+ N L+      I    N   +  L
Sbjct: 47  QIIANNSDIKSVQGIQYLPN--VTK-------LFLNGNKLTD-----IKPLTNLKNLGWL 92

Query: 59  KLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP 118
            L +N    D+     +   L+ L+L+ N  + ++   +  L  L SL+L NN++  I  
Sbjct: 93  FLDENKIK-DLSSL-KDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDITV 148

Query: 119 VSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRI 178
             L   + L +L + +N     I         +L  L L  N  +  L   L  L  L +
Sbjct: 149 --LSRLTKLDTLSLEDNQ-ISDIVPL--AGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDV 201

Query: 179 LDVAHNNLSGTIPRCINNFTAMATI-NSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEY 237
           L++             +N     T+ N+             G+    +          E 
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

Query: 238 NSILNLVRSIDISKNNFSGEIPMQLTN 264
           + I     +I  +K  F G +   L  
Sbjct: 262 SFIFYQPVTIGKAKARFHGRVTQPLKE 288

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 62/334 (18%), Positives = 100/334 (29%), Gaps = 48/334 (14%)

Query: 31  LDLSNNALSGSIIHLICNG--DNKSVIISLKLSKNYFS----GDIPDCWMNWPHLQVLNL 84
           L+L +N L    +H +  G       I  L L     +    G +       P LQ L+L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 85  DDNYFT--GNLPISIGTLS---SLRSLHLRNNRL----AGIFPVSLKNCSSLISLDIGEN 135
            DN     G   +  G L     L  L L    L           L+       L +  N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 136 DFFGSIPTWVGERFP----RLLILNLRSNKFN----GSLPVQLCHLTFLRILDVAHNNLS 187
           D   +    + +       +L  L L S          L   +     LR L +  N L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 188 GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSI 247
                 +     +   +S  +   I+       I  +    + + L       L   + +
Sbjct: 241 DVGMAEL--CPGLLHPSSRLRTLWIWE----CGITAKGCGDLCRVLRA--KESL---KEL 289

Query: 248 DISKNNFSGEIPMQL-----TNLEGLQTLNLSHNFF----VGKIPENIGNMRSIESLDFS 298
            ++ N    E    L          L++L +    F           +   R +  L  S
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349

Query: 299 TNRL----FGRIPQSM-SSLSFLNHLNLSENDLS 327
            NRL       + Q +    S L  L L++ D+S
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 53/282 (18%), Positives = 96/282 (34%), Gaps = 51/282 (18%)

Query: 31  LDLSNNALSGSIIHLICNG--DNKSVIISLKLSKNYFSGD----IPDCWMNWPHLQVLNL 84
           L +SNN ++ + + ++C G  D+   + +LKL     + D    +     +   L+ L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 85  DDNYFT--GNLPISIGTL---SSLRSLHLRNNRL--AGIFPVS--LKNCSSLISLDIGEN 135
             N     G   +  G L   S LR+L +    +   G   +   L+   SL  L +  N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 136 DFFGS----IPTWVGERFPRLLILNLRSNKFNG----SLPVQLCHLTFLRILDVAHNNLS 187
           +        +   + E   +L  L ++S  F           L    FL  L +++N L 
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

Query: 188 GTIPRCI-----NNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSIL 241
               R +        + +  +  +               +     S +   L    N  L
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCD------------VSDSSCSSLAATL--LANHSL 400

Query: 242 NLVRSIDISKNNFSGEIPMQL-----TNLEGLQTLNLSHNFF 278
              R +D+S N       +QL          L+ L L   ++
Sbjct: 401 ---RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 41/311 (13%), Positives = 94/311 (30%), Gaps = 50/311 (16%)

Query: 74  MNWPHLQVLNLDDNYFTGN-LPISIGTLSSLRSLHLRNNRL----AGIFPVSLKNCSSLI 128
           M+   +Q L++     +       +  L   + + L +  L          +L+   +L 
Sbjct: 1   MS-LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 129 SLDIGENDF----FGSIPTWVGERFPRLLILNLRSNKFN----GSLPVQLCHLTFLRILD 180
            L++  N+        +   +     ++  L+L++        G L   L  L  L+ L 
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 181 VAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI 240
           ++ N L             +       Q       +   ++       +   L       
Sbjct: 120 LSDNLLGDA------GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA--KPD 171

Query: 241 LNLVRSIDISKNNFSGEIPMQL-----TNLEGLQTLNLSHNFF----VGKIPENIGNMRS 291
               + + +S N+ +      L      +   L+ L L            +   + +  S
Sbjct: 172 F---KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228

Query: 292 IESLDFSTNRLFGR-----IPQSMSSLSFLNHLNLSENDLSGQ--------IPSSTQLQS 338
           +  L   +N+L         P  +   S L  L + E  ++ +        + +   L+ 
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 339 FGASCFSGNDL 349
                 +GN+L
Sbjct: 289 L---SLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 44/334 (13%), Positives = 95/334 (28%), Gaps = 81/334 (24%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCW-------MNWPHLQVLN 83
           LD+    LS +    +           ++L     +                 P L  LN
Sbjct: 8   LDIQCEELSDARWAELL--PLLQQCQVVRLDDCGLT---EARCKDISSALRVNPALAELN 62

Query: 84  LDDNYFTGNLPISIGTL-----SSLRSLHLRNNRL----AGIFPVSLKNCSSLISLDIGE 134
           L  N         +          ++ L L+N  L     G+   +L+   +L  L + +
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 135 NDF----FGSIPTWVGERFPRLLILNLRSNKFN----GSLPVQLCHLTFLRILDVAHNNL 186
           N         +   + +   RL  L L     +      L   L      + L V++N++
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRS 246
           +                                        V+ +GL      +  L   
Sbjct: 183 NE-----------------------------------AGVRVLCQGLKDSPCQLEAL--- 204

Query: 247 IDISKNNFSGE----IPMQLTNLEGLQTLNLSHNFF----VGKIPENIGNM-RSIESLDF 297
             +     + +    +   + +   L+ L L  N      + ++   + +    + +L  
Sbjct: 205 -KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 298 STNRL----FGRIPQSMSSLSFLNHLNLSENDLS 327
               +     G + + + +   L  L+L+ N+L 
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 4/112 (3%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
            +L+ L +     T +   ++  L+SL  L + ++         +     + S+D+  N 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSG 188
               I     +  P L  LN++ +  +      +     L  L      + G
Sbjct: 148 AITDIMPL--KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 25/155 (16%), Positives = 60/155 (38%), Gaps = 10/155 (6%)

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
            ++  L ++  + +I +  MN   L  + L +   T +L   I    +++ L + N    
Sbjct: 25  YLNGLLGQS-STANITEAQMN--SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT 79

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLT 174
              P  +   S+L  L I   D        +      L +L++  +  + S+  ++  L 
Sbjct: 80  NYNP--ISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLP 136

Query: 175 FLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQ 208
            +  +D+++N     I   +     + ++N   + 
Sbjct: 137 KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 27/229 (11%), Positives = 67/229 (29%), Gaps = 55/229 (24%)

Query: 100 LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS 159
             +  +  L  +  A I    + +   L  + +   +    +     E    +  L + +
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNS---LTYITLANINV-TDLTGI--EYAHNIKDLTINN 75

Query: 160 NKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRG 219
                  P  +  L+ L  L +   +++      ++  T                     
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLT--------------------- 112

Query: 220 NIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFV 279
                                 +L   +DIS +     I  ++  L  + +++LS+N  +
Sbjct: 113 ----------------------SL-TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 280 GKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG 328
             I   +  +  ++SL+   + +       +     LN L      + G
Sbjct: 150 TDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 13/135 (9%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           +L ++N       P      L         L +    ++   I  +    +   +  L +
Sbjct: 70  DLTINNIHATNYNPISGLSNLER-------LRIMGKDVTSDKIPNLSGLTS---LTLLDI 119

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           S +     I       P +  ++L  N    ++   + TL  L+SL+++ + +       
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG-- 176

Query: 121 LKNCSSLISLDIGEN 135
           +++   L  L     
Sbjct: 177 IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 38/234 (16%), Positives = 67/234 (28%), Gaps = 57/234 (24%)

Query: 69  IPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLI 128
           IPD    +       L  +       I+   ++SL  + L N  +  +    ++   ++ 
Sbjct: 17  IPD--STFKAYLNGLLGQS---STANITEAQMNSLTYITLANINVTDLTG--IEYAHNIK 69

Query: 129 SLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSG 188
            L I         P         L  L +            L  LT L +LD++H+    
Sbjct: 70  DLTINNIHATNYNPI---SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 189 TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSID 248
           +I   IN                                               +  SID
Sbjct: 127 SILTKINTLP-------------------------------------------KV-NSID 142

Query: 249 ISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRL 302
           +S N    +I   L  L  L++LN+  +  V      I +   +  L   +  +
Sbjct: 143 LSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDY-RGIEDFPKLNQLYAFSQTI 193

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 31/226 (13%), Positives = 73/226 (32%), Gaps = 23/226 (10%)

Query: 100 LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS 159
             S ++L L    L  I   +  N  ++  + +  +     + +       ++  + +R+
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 160 NKFNGSLPVQ-LCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTR 218
            +    +    L  L  L+ L + +  L     +   + T +     S     I      
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGL-----KMFPDLTKV----YSTDIFFILEITDN 140

Query: 219 GNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFF 278
             +     +         +  + N   ++ +  N F+  +     N   L  + L+ N +
Sbjct: 141 PYMTSIPVNA--------FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKY 191

Query: 279 VGKIPENI--GNMRSIESLDFSTNRLFGRIP-QSMSSLSFLNHLNL 321
           +  I ++   G       LD S   +   +P + +  L  L   N 
Sbjct: 192 LTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 37/196 (18%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLS-NNALSGSIIHLICNGDNKSVIISLK 59
            L L    +   IP      LP        + +S +  L                    +
Sbjct: 35  TLKLIETHL-RTIPSHAFSNLP----NISRIYVSIDVTLQ-------------------Q 70

Query: 60  LSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRNNRLAGIFP 118
           L  + F             +  + + +      +       L  L+ L + N  L     
Sbjct: 71  LESHSFYN--------LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD 122

Query: 119 VS-LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLI-LNLRSNKFNGSLPVQLCHLTFL 176
           ++ + +      L+I +N +  SIP    +      + L L +N F  S+     + T L
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181

Query: 177 RILDVAHNNLSGTIPR 192
             + +  N     I +
Sbjct: 182 DAVYLNKNKYLTVIDK 197

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 39/237 (16%), Positives = 88/237 (37%), Gaps = 33/237 (13%)

Query: 100 LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS 159
           L++   +    + +     V+  +   + +L         +I     +    L+ L L+ 
Sbjct: 18  LANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTG-VTTIEGV--QYLNNLIGLELKD 72

Query: 160 NKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTR 218
           N+     P  L +LT +  L+++ N L       I    ++ T++ +S Q   +      
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 219 GNIVFEDASVVTKGLLVEYNSILNL--------VRSIDISKNNFSGEIPMQLTNLEGLQT 270
            N+         + L ++ N I N+        ++ + I     S   P  L NL  L T
Sbjct: 129 SNL---------QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177

Query: 271 LNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
           L    N  +  I   + ++ ++  +    N++       +++ S L  + L+   ++
Sbjct: 178 LKADDN-KISDIS-PLASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 49/340 (14%), Positives = 105/340 (30%), Gaps = 80/340 (23%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           ++    + +   +   D   +         L      ++ +I  +       + +I L+L
Sbjct: 23  KIAAGKSNVTDTVTQADLDGITT-------LSAFGTGVT-TIEGV----QYLNNLIGLEL 70

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
             N  + D+     N   +  L L  N    N+  +I  L S+++L L + ++  + P  
Sbjct: 71  KDNQIT-DLAPL-KNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179
           L   S+L  L +  N     I           L  L++ + + +   P  L +L+ L  L
Sbjct: 125 LAGLSNLQVLYLDLN----QITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 180 DVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNS 239
               N +S      I+   +                                        
Sbjct: 179 KADDNKISD-----ISPLAS---------------------------------------- 193

Query: 240 ILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFST 299
            L  +  + +  N  S   P  L N   L  + L++     +      N+          
Sbjct: 194 -LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLV-------VP 243

Query: 300 NRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSF 339
           N + G     ++  +  ++   +  +L+  + S     S+
Sbjct: 244 NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSY 283

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 33/221 (14%), Positives = 77/221 (34%), Gaps = 43/221 (19%)

Query: 110 NNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ 169
              +  IFP      ++ I +  G+++   ++          +  L+        ++   
Sbjct: 6   PTAINVIFP--DPALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVT-TIEG- 58

Query: 170 LCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFEDASV 228
           + +L  L  L++  N ++   P  + N T +  +  S N    +                
Sbjct: 59  VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV---------------- 100

Query: 229 VTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIP--ENI 286
                     + L  ++++D++    +   P  L  L  LQ L L  N    +I     +
Sbjct: 101 -------SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN----QITNISPL 147

Query: 287 GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
             + +++ L     ++       +++LS L  L   +N +S
Sbjct: 148 AGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKIS 186

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 9/154 (5%)

Query: 58  LKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIF 117
           L LS+N          M +  L  LNLD    T  L +  GTL  L +L L +N+L  + 
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQSL- 92

Query: 118 PVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLC-HLTFL 176
           P+  +   +L  LD+  N    S+P         L  L L+ N+   +LP  L      L
Sbjct: 93  PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150

Query: 177 RILDVAHNNLSGTIPRCI-NNFTAMATIN-SSNQ 208
             L +A+NNL+  +P  + N    + T+    N 
Sbjct: 151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
               +L+L +N        ++   + L  L+L    L  +  V       L +LD+  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQ 88

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQL-CHLTFLRILDVAHNNLSGTIP 191
              S+P  +G+  P L +L++  N+   SLP+     L  L+ L +  N L  T+P
Sbjct: 89  -LQSLPL-LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLP 140

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 79  LQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFF 138
              +N D    T  LP  +        LHL  N L      +L   + L  L++   +  
Sbjct: 12  HLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-L 67

Query: 139 GSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPR 192
             +   V    P L  L+L  N+   SLP+    L  L +LDV+ N L+ ++P 
Sbjct: 68  TKLQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 8e-08
 Identities = 40/250 (16%), Positives = 67/250 (26%), Gaps = 45/250 (18%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNR-LAGIFPVSLKNCSSLISLDIGEN 135
            +   L             +      L  + +  N  L  I      N   L  + I + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCIN 195
           +    I     +  P L  L + +        V   H     +LD+  N    TI R  N
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--N 147

Query: 196 NFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFS 255
           +F  ++                                             + ++KN   
Sbjct: 148 SFVGLS----------------------------------------FESVILWLNKNGIQ 167

Query: 256 GEIPMQLTNLEGLQTLNLSHNFFVGKIPENI-GNMRSIESLDFSTNRLFGRIPQSMSSLS 314
            EI     N   L  LNLS N  + ++P ++         LD S  R+       + +L 
Sbjct: 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226

Query: 315 FLNHLNLSEN 324
            L   +    
Sbjct: 227 KLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 41/257 (15%), Positives = 85/257 (33%), Gaps = 49/257 (19%)

Query: 80  QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFG 139
           +V    ++  T  +P  +    +   L     +L  I   +      L  ++I +ND   
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 140 SIPTWVGERFPRLLILNLRSNKFNGSLPVQLC-HLTFLRILDVAHNNLSGTIPRCINNFT 198
            I   V    P+L  + +        +  +   +L  L+ L +++  +   +P       
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLP------- 120

Query: 199 AMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEI 258
            +  I+S  +                        L ++ N  ++      I +N+F G  
Sbjct: 121 DVHKIHSLQKVL----------------------LDIQDNINIH-----TIERNSFVG-- 151

Query: 259 PMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQ-SMSSLSFLN 317
              L+       L L+ N    +I  +  N   ++ L+ S N     +P       S   
Sbjct: 152 ---LSFE--SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 318 HLNLSENDLSGQIPSST 334
            L++S   +   +PS  
Sbjct: 206 ILDISRTRIH-SLPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 35/209 (16%)

Query: 1   ELNLSNNQIYGVIP--YFDH---------------RPLPYQPFEFGL-----LDLSNNAL 38
           ++ +S N +  VI    F +                 +  + F+  L     L +SN  +
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ-NLPNLQYLLISNTGI 116

Query: 39  SGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNW--PHLQVLNLDDNYFTGNLPIS 96
              +  +      + V+  L +  N     I             +L L+ N     +  S
Sbjct: 117 K-HLPDVHKIHSLQKVL--LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNS 172

Query: 97  IGTLSSLRSLHL-RNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLIL 155
               + L  L+L  NN L  +        S  + LDI       S+P++  E   +L   
Sbjct: 173 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRAR 231

Query: 156 NLRSNKFNGSLPVQLCHLTFLRILDVAHN 184
           +  + K    LP  L  L  L    + + 
Sbjct: 232 STYNLK---KLPT-LEKLVALMEASLTYP 256

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 63/404 (15%), Positives = 117/404 (28%), Gaps = 120/404 (29%)

Query: 5   SNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDN---KSVIISLKLS 61
           ++NQ++    Y   R  PY      LL+L        +I     G     K+ +      
Sbjct: 121 NDNQVF--AKYNVSRLQPYLKLRQALLELRPA--KNVLID----GVLGSGKTWVALDVCL 172

Query: 62  ----KNYFSGDIPDCWMNW----------PHLQVL--NLDDNY-----FTGNLPISIGT- 99
               +      I   W+N             LQ L   +D N+      + N+ + I + 
Sbjct: 173 SYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 100 ---LSSL-------RSL----HLRNNRLAGIFPVSLKNCSSLI-SLDIGENDFFGSIPTW 144
              L  L         L    +++N +    F +   +C  L+ +      DF  +  T 
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL---SCKILLTTRFKQVTDFLSAATTT 287

Query: 145 --VGERFPRLL----ILNLRSNKFN---GSLPVQLC-----------------HLTFLRI 178
               +     L    + +L     +     LP ++                    T+   
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 179 LDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLV--- 235
             V  + L+  I   +N       +  +  +            VF  ++ +   LL    
Sbjct: 348 KHVNCDKLTTIIESSLNV------LEPAEYRKMFDRLS-----VFPPSAHIPTILLSLIW 396

Query: 236 ------EYNSILN-LVRSIDISKNNFSG--EIP-MQL---TNLEGLQTLNLSHNFFVGKI 282
                 +   ++N L +   + K        IP + L     LE    L   H      I
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL---HR----SI 449

Query: 283 PENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLN-HLNLSEND 325
            ++    ++ +S D     L           S +  HL   E+ 
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYF------YSHIGHHLKNIEHP 487

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 54/301 (17%), Positives = 99/301 (32%), Gaps = 61/301 (20%)

Query: 17  DHRPLPYQPFE-FGLL---------DLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFS 66
           DH  +   P E   LL         DL    L+ +   L         II+  +      
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--------SIIAESIR----- 338

Query: 67  GDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNN--RLAGIFPVSLKNC 124
            D    W NW H+    L          I   +L+ L     R    RL+ +FP S    
Sbjct: 339 -DGLATWDNWKHVNCDKLTTI-------IES-SLNVLEPAEYRKMFDRLS-VFPPSAHIP 388

Query: 125 SSLISL---DIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP-VQLCHLTFLRILD 180
           + L+SL   D+ ++D        V  +  +  ++  +  +   S+P + L     L    
Sbjct: 389 TILLSLIWFDVIKSD-----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 181 VAHNNL--SGTIPRCINNFTAMATINSSNQKNAIYYFVTR--GNIVFEDASVVTKGLLVE 236
             H ++     IP+  ++   +            Y  +     NI   +   + + + ++
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLD----QYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 237 YNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLD 296
           +  +   +R    + N         + N   LQ L     +     P+    + +I  LD
Sbjct: 500 FRFLEQKIRHDSTAWNASGS-----ILNT--LQQLKFYKPYICDNDPKYERLVNAI--LD 550

Query: 297 F 297
           F
Sbjct: 551 F 551

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGT----LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI 132
            +  +L+L  N  +    +        L++L SL L +N L  I   +     +L  LD+
Sbjct: 39  SYTALLDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 133 GENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPR 192
             N    ++  ++      L +L L +N            +  L+ L ++ N +S   P 
Sbjct: 96  SSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGT---LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIG 133
            +L  L L  N+      IS      + +LR L L +N L  +      +  +L  L + 
Sbjct: 64  TNLHSLLLSHNHLNF---ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120

Query: 134 ENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ----LCHLTFLRILDVAHNNLSGT 189
            N     +     E   +L  L L  N+ +   PV+       L  L +LD++ N L   
Sbjct: 121 NNHI-VVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-K 177

Query: 190 IPR 192
           +P 
Sbjct: 178 LPL 180

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 42/289 (14%), Positives = 94/289 (32%), Gaps = 47/289 (16%)

Query: 79  LQVLNLDDNYFTG----NLPISIGTLSSLRSLHLRNNRL--AGIFPVS--LKNCSSLISL 130
           ++  +L  +  T     ++   +    S++ + L  N +       +S  + +   L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 131 DIGENDFFGSIPTWVGE----------RFPRLLILNLRSNKFNGSLPVQ-----LCHLTF 175
           +  +  F G +   + E          + P+L  + L  N F G    +     L   T 
Sbjct: 66  EFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTP 123

Query: 176 LRILDVAHNNLSGTIPRCI-NNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLL 234
           L  L + +N L       I      +A    +     +   +   N   E+ S+      
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKT 182

Query: 235 VEYNSILNLVRSIDISKNNFSGE-----IPMQLTNLEGLQTLNLSHNFF----VGKIPEN 285
            + + +L    ++ + +N    E     +   L   + L+ L+L  N F       +   
Sbjct: 183 FQSHRLL---HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239

Query: 286 IGNMRSIESLDFSTNRL-------FGRIPQSMSSLSFLNHLNLSENDLS 327
           + +  ++  L  +   L              + ++  L  L L  N++ 
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 45/294 (15%), Positives = 84/294 (28%), Gaps = 61/294 (20%)

Query: 31  LDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNYFSGDIPDCW-----------MNWPH 78
           + LS N +       +     +K  +   + S   F+G + D             +  P 
Sbjct: 37  IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPK 95

Query: 79  LQVLNLDDNYFTGNLPISIGTL----SSLRSLHLRNNRL-------------AGIFPVSL 121
           L  + L DN F       +       + L  L+L NN L                     
Sbjct: 96  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155

Query: 122 KNCSSLISLDIGENDFFGSIPTWVGE---RFPRLLILNLRSNKFN-----GSLPVQLCHL 173
           KN   L S+  G N           +       L  + +  N          L   L + 
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 174 TFLRILDVAHNNLSGT----IPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVV 229
             L++LD+  N  +      +   + ++  +  +  ++    +             A+ V
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND--CLL------SA---RGAAAV 264

Query: 230 TKGLLVEYNSILNLVRSIDISKNNFSGEIPMQL-----TNLEGLQTLNLSHNFF 278
                   N  L   +++ +  N    +    L       +  L  L L+ N F
Sbjct: 265 VDAFSKLENIGL---QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 43/351 (12%), Positives = 92/351 (26%), Gaps = 97/351 (27%)

Query: 31  LDLSNNALSGSIIHLICNG--DNKSVIISLKLSKNYFSGD----IPDCWMNWPHLQVLNL 84
             L  +A++      +     ++ SV   + LS N    +    + +   +   L++   
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVK-EIVLSGNTIGTEAARWLSENIASKKDLEIAEF 67

Query: 85  DDNYFTGNLPI-----------SIGTLSSLRSLHLRNNRL--AGIFPVS--LKNCSSLIS 129
            D  FTG +             ++     L ++ L +N        P+   L   + L  
Sbjct: 68  SDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126

Query: 130 LDIGENDF------------FGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ-----LCH 172
           L +  N                       +  P L  +    N+   +  ++        
Sbjct: 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQS 185

Query: 173 LTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKG 232
              L  + +  N         I        +                             
Sbjct: 186 HRLLHTVKMVQNG--------IRPEGIEHLLLEGLAYCQ--------------------- 216

Query: 233 LLVEYNSILNLVRSIDISKNNFSGE----IPMQLTNLEGLQTLNLSHN-------FFVGK 281
                     L + +D+  N F+      + + L +   L+ L L+           V  
Sbjct: 217 ---------EL-KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266

Query: 282 IPENIGNMRSIESLDFSTNRL----FGRIPQSM-SSLSFLNHLNLSENDLS 327
               + N   +++L    N +       +   +   +  L  L L+ N  S
Sbjct: 267 AFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 34/274 (12%), Positives = 68/274 (24%), Gaps = 69/274 (25%)

Query: 102 SLRSLHLRNNRL--AGIFPVS--LKNCSSLISLDIGENDFFGSIPTWVG----------- 146
           S+    L+ + +       V   L    S+  + +  N          G           
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI--------GTEAARWLSENI 56

Query: 147 ERFPRLLILNLRSNKFNGSLPVQ----------LCHLTFLRILDVAHNNLSGTIPRCINN 196
                L I                         L     L  + ++ N      P     
Sbjct: 57  ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---PTAQEP 113

Query: 197 FTAMATINSSNQK-----NAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLV----RSI 247
                + ++  +      N +      G    +  + + + L     +         RSI
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGL------GP---QAGAKIARALQELAVNKKAKNAPPLRSI 164

Query: 248 DISKNNFSGE----IPMQLTNLEGLQTLNLSHNFF-----VGKIPENIGNMRSIESLDFS 298
              +N               +   L T+ +  N          + E +   + ++ LD  
Sbjct: 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 224

Query: 299 TNRLFGR-----IPQSMSSLSFLNHLNLSENDLS 327
            N  F       +  ++ S   L  L L++  LS
Sbjct: 225 DNT-FTHLGSSALAIALKSWPNLRELGLNDCLLS 257

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 44/209 (21%), Positives = 69/209 (33%), Gaps = 35/209 (16%)

Query: 77  PHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN 135
           P LQVL+L        +      +LS L +L L  N +  +   +    SSL  L   E 
Sbjct: 52  PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQ--LCHLTFLRILDVAHNNLSGTIPRC 193
           +   S+  +       L  LN+  N    S  +     +LT L  LD++ N +  +I   
Sbjct: 111 NLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT 167

Query: 194 I-NNFTAMATIN-----SSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSI 247
                  M  +N     S N  N I          F++               + L + +
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFI------QPGAFKE---------------IRL-KEL 205

Query: 248 DISKNNFSGEIPMQLTNLEGLQTLNLSHN 276
            +  N            L  LQ + L  N
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 44/204 (21%), Positives = 73/204 (35%), Gaps = 30/204 (14%)

Query: 1   ELNLSNNQIYGVIP-YFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG--DNKSVIIS 57
            L+LS N +  +    F   P      E  +LDLS   +       I +G   + S + +
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFP------ELQVLDLSRCEIQT-----IEDGAYQSLSHLST 80

Query: 58  LKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRL---- 113
           L L+ N         +     LQ L   +          IG L +L+ L++ +N +    
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 114 -AGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRL----LILNLRSNKFNGSLPV 168
               F     N ++L  LD+  N    SI         ++    L L+L  N  N  +  
Sbjct: 141 LPEYFS----NLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 169 QLCHLTFLRILDVAHNNLSGTIPR 192
                  L+ L +  N L  ++P 
Sbjct: 195 GAFKEIRLKELALDTNQLK-SVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 23/227 (10%)

Query: 101 SSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN 160
            S ++L L  N L  +   S  +   L  LD+   +   +I     +    L  L L  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN 86

Query: 161 KFNGSLPVQL-CHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTR 218
               SL +     L+ L+ L     NL+      I +   +  +N + N   +      +
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----K 140

Query: 219 GNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQ-TLNLSHNF 277
               F + + +   L +  N I +      I   +        L  +  L  +L+LS N 
Sbjct: 141 LPEYFSNLTNLEH-LDLSSNKIQS------IYCTDLRV-----LHQMPLLNLSLDLSLN- 187

Query: 278 FVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEN 324
            +  I         ++ L   TN+L          L+ L  + L  N
Sbjct: 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 28/158 (17%), Positives = 45/158 (28%), Gaps = 30/158 (18%)

Query: 38  LSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT--GNLPI 95
           L+  +I       N      L L        I +          ++  DN        P 
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP- 61

Query: 96  SIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVG----ERFPR 151
               L  L++L + NNR+  I     +    L  L +  N    S+              
Sbjct: 62  ---LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN----SLVELGDLDPLASLKS 114

Query: 152 LLILNLRSNKFNGSLPVQ---------LCHLTFLRILD 180
           L  L +  N      PV          +  +  +R+LD
Sbjct: 115 LTYLCILRN------PVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 100 LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS 159
               R L LR  ++  I  +         ++D  +N+    +  +      RL  L + +
Sbjct: 18  AVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEI-RKLDGF--PLLRRLKTLLVNN 73

Query: 160 NKFNGSLPVQLCHLTFLRILDVAHNNLS 187
           N+           L  L  L + +N+L 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIP--ENIGNMRSIESLDFS 298
               R +D+        I      L+    ++ S N    +I   +    +R +++L  +
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVN 72

Query: 299 TNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
            NR+         +L  L  L L+ N L 
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 36/136 (26%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           EL+L   +I  VI         +       +D S+N +   +                  
Sbjct: 23  ELDLRGYKI-PVIENLGATLDQFD-----AIDFSDNEIR-KLDGFPLL------------ 63

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
                             L+ L +++N            L  L  L L NN L  +  + 
Sbjct: 64  ----------------RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD 107

Query: 121 -LKNCSSLISLDIGEN 135
            L +  SL  L I  N
Sbjct: 108 PLASLKSLTYLCILRN 123

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 23/187 (12%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           +L L+ N++  + P  + + L +       L L  N      +  + +  +   + SL L
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGW-------LFLDENK-----VKDLSSLKDLKKLKSLSL 119

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
             N  S DI    ++ P L+ L L +N  T    +S   L+ L +L L +N+++ I P  
Sbjct: 120 EHNGIS-DINGL-VHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP-- 173

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179
           L   + L +L + +N     I           L +L L S +          +L     +
Sbjct: 174 LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 180 DVAHNNL 186
                +L
Sbjct: 230 KNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 48/271 (17%), Positives = 96/271 (35%), Gaps = 41/271 (15%)

Query: 55  IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114
            I   L K   +  +         +  +  +++       I    L ++  L L  N+L 
Sbjct: 26  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLT 81

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNKFNGSLPVQLCHL 173
            I P  L N  +L  L + EN     +      +   +L  L+L  N  +  +   L HL
Sbjct: 82  DIKP--LANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DING-LVHL 133

Query: 174 TFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGL 233
             L  L + +N ++      ++  T + T++  +  N I            D   +    
Sbjct: 134 PQLESLYLGNNKITDITV--LSRLTKLDTLSLED--NQI-----------SDIVPLAG-- 176

Query: 234 LVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIE 293
                  L  ++++ +SKN+ S ++   L  L+ L  L L     + K   +  N+    
Sbjct: 177 -------LTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

Query: 294 SLDFSTNRLFGRIPQSMSSLSFLNHLNLSEN 324
           ++  +   L    P+ +S        N+  +
Sbjct: 228 TVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 27/244 (11%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           + NL    +   +   +   +         +  +N+      I  +        +  L L
Sbjct: 28  KDNLKKKSVTDAVTQNELNSIDQ-------IIANNSD-----IKSVQGIQYLPNVTKLFL 75

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           + N  + DI     N  +L  L LD+N    +L  S+  L  L+SL L +N ++ I    
Sbjct: 76  NGNKLT-DIKPL-ANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDING-- 129

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179
           L +   L SL +G N     I       R  +L  L+L  N+ +  +   L  LT L+ L
Sbjct: 130 LVHLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 183

Query: 180 DVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNS 239
            ++ N++S      +     +  +   +Q+        + N+V  +    T G LV    
Sbjct: 184 YLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241

Query: 240 ILNL 243
           I + 
Sbjct: 242 ISDD 245

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 41/224 (18%)

Query: 106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGS 165
                  +  IF       +  I  ++ +     ++          +  +   ++    S
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIK-S 60

Query: 166 LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFED 225
           +   + +L  +  L +  N L+   P  + N   +  +      N +           +D
Sbjct: 61  VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE--NKV-----------KD 104

Query: 226 ASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKI--P 283
            S +           L  ++S+ +  N  S +I   L +L  L++L L +N    KI   
Sbjct: 105 LSSLKD---------LKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNN----KITDI 149

Query: 284 ENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327
             +  +  +++L    N++       ++ L+ L +L LS+N +S
Sbjct: 150 TVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 24/259 (9%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           ++  +N+ I  V        +         L L+ N L+      I    N   +  L L
Sbjct: 50  QIIANNSDIKSVQGIQYLPNVTK-------LFLNGNKLTD-----IKPLANLKNLGWLFL 97

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
            +N    D+     +   L+ L+L+ N  + ++   +  L  L SL+L NN++  I    
Sbjct: 98  DENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDITV-- 151

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
           L   + L +L + +N     I         +L  L L  N  +      L  L  L +L+
Sbjct: 152 LSRLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLE 206

Query: 181 VAHNNLSGTIPRCINNFTAMATI-NSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNS 239
           +             +N     T+ N+             G+    +          E + 
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF 266

Query: 240 ILNLVRSIDISKNNFSGEI 258
           I     +I  +K  F G +
Sbjct: 267 IFYQPVTIGKAKARFHGRV 285

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
           L L N   +     +         +  L L        + +     P L+ L L +N   
Sbjct: 29  LVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKL-PKLKKLELSENRIF 84

Query: 91  GNLPISIGTLSSLRSLHLRNNRLAGIFPVS-LKNCSSLISLDIGEN 135
           G L +    L +L  L+L  N+L  I  +  LK    L SLD+   
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 245 RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFG 304
             +D  K+N  G+I         L+ L+L +   +  +  N+  +  ++ L+ S NR+FG
Sbjct: 29  LVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFG 85

Query: 305 RIPQSMSSLSFLNHLNLSENDLS 327
            +      L  L HLNLS N L 
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 99  TLSSLRSLHLRNNRLAGI-FPVSLKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILN 156
           T +++R L L N +              +L  L +        + +     + P+L  L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----LISVSNLPKLPKLKKLE 77

Query: 157 LRSNKFNGSLPVQLCHLTFLRILDVAHNNLS 187
           L  N+  G L +    L  L  L+++ N L 
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 77  PHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN 135
            +   L L++N FT      I   L  LR ++  NN++  I   + +  S +  + +  N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQL-CHLTFLRILDVAHNNLSGTIPR 192
               ++   + +    L  L LRSN+    +       L+ +R+L +  N ++ T+  
Sbjct: 92  RL-ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 58  LKLSKNYFSGDIPD-CWMNWPHLQVLNLDDNYFTGNLPISIGT---LSSLRSLHLRNNRL 113
           L+L+ N F+       +   P L+ +N  +N  T    I  G     S +  + L +NRL
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD---IEEGAFEGASGVNEILLTSNRL 93

Query: 114 AGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP 167
             +     K   SL +L +  N     +          + +L+L  N+   ++ 
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 16/134 (11%)

Query: 67  GDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRL--AGIFPVSLKNC 124
            D+       P L  L +     T NL I      +L+SL + +  L  + +  +   + 
Sbjct: 162 VDLSPVLDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 125 SSLISLDI--GENDFFGSI------PTWVGERFPRLLILNLRSNKFNGSLPVQLCH---L 173
            +L  L +  G  D+          P +  +RFP L  L +   +    +         L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 174 TFLRILDVAHNNLS 187
             L  +D++   L+
Sbjct: 279 PQLETMDISAGVLT 292

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 55/335 (16%), Positives = 104/335 (31%), Gaps = 74/335 (22%)

Query: 31  LDLSNNALSGSIIHLICNG--DNKSVIISLKLSKNYFSGDIPDCWM--------NWPHLQ 80
           LDLS N L       +     +  + + SL LS N                      ++ 
Sbjct: 27  LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG---FKNSDELVQILAAIPANVT 83

Query: 81  VLNLDDNYFT--GNLPIS---IGTLSSLRSLHLRNNRL-----AGIFPVSLKNCSSLISL 130
            LNL  N+ +   +  +         ++  L L  N       +          +S+ SL
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 131 DIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTI 190
           ++  ND         G +    LI  L +                +  L++  NNL+   
Sbjct: 144 NLRGNDL--------GIKSSDELIQILAAIP------------ANVNSLNLRGNNLASKN 183

Query: 191 PRCINNFTAMATINSSNQK-----NAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVR 245
              +     +A+I +S        N +      G    +  + +         SI N V 
Sbjct: 184 CAEL--AKFLASIPASVTSLDLSANLL------GL---KSYAELAYIFS----SIPNHVV 228

Query: 246 SIDISKNNFSGE----IPMQLTNLEGLQTLNLSHNFF-------VGKIPENIGNMRSIES 294
           S+++  N   G     + +   +L+ LQT+ L ++            +     N++ I  
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288

Query: 295 LDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQ 329
           +D +   +       +S+L            L  Q
Sbjct: 289 VDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 36/221 (16%), Positives = 62/221 (28%), Gaps = 41/221 (18%)

Query: 1   ELNLSNNQIY--GVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG--DNKSVII 56
            LNLS N +             L   PF   +LDL  N  S            +  + I 
Sbjct: 84  SLNLSGNFLSYKSSDELVKT--LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 57  SLKLSKNYFSGD----------IPDCWMNWPHLQVLNLDDNYFTGNLPISIGTL-----S 101
           SL L  N                        ++  LNL  N         +        +
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPA-----NVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 102 SLRSLHLRNNRL--AGIFPVS---LKNCSSLISLDIGENDFFGSIPTWVGE---RFPRLL 153
           S+ SL L  N L       ++       + ++SL++  N   G     +         L 
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 154 ILNLRSNKFNG-------SLPVQLCHLTFLRILDVAHNNLS 187
            + L  +           +L     ++  + ++D     + 
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 43  IHLICNGDNKSVIISLKLSKNYFS-GDIPDCWMNWPHLQVLNLDDNYFT--GNLPISIGT 99
           IHL       S +  L L  +  + G +      +  L+ L+  +   T   NLP     
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----K 62

Query: 100 LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLR 158
           L+ L+ L L +NR++G   V  + C +L  L++  N     + T    ++   L  L+L 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLF 121

Query: 159 SN 160
           + 
Sbjct: 122 NC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 245 RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFG 304
             +D S++N  G++       E L+ L+  +   +  I  N+  +  ++ L+ S NR+ G
Sbjct: 22  LVLDNSRSN-EGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSG 78

Query: 305 RIPQSMSSLSFLNHLNLSENDLS 327
            +         L HLNLS N + 
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 99  TLSSLRSLHLRNNRLAGI-FPVSLKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILN 156
           T S ++ L L N+R               L  L          + +     +  +L  L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKLKKLE 70

Query: 157 LRSNKFNGSLPVQLCHLTFLRILDVAHNNLS 187
           L  N+ +G L V       L  L+++ N + 
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 1/94 (1%)

Query: 257 EIPMQLTNLEGLQTLNLSHNFFVGKIPEN-IGNMRSIESLDFSTNRLFGRIPQSMSSLSF 315
           +    L   E L  L + +   +  +    +  +  + +L    + L    P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 316 LNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDL 349
           L+ LNLS N L      + Q  S      SGN L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 92  NLPISIGTLSSLRSLHLR-NNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP 150
           +    +    +L  L++     L  +    L+    L +L I ++     +        P
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTP 80

Query: 151 RLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL 186
           RL  LNL  N    SL  +      L+ L ++ N L
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 80  QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFG 139
             + L+ N      P +      LR + L NN+++ + P + +   SL SL +  N    
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-T 93

Query: 140 SIPTWVGERFPRLLILNLRSNKFNGSLPVQL-CHLTFLRILDVAHNNLSGTIPR 192
            +P  + E    L +L L +NK N  L V     L  L +L +  N L  TI +
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 101 SSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN 160
            ++  + L  N +  I P +      L  +D+  N     +     +    L  L L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN 90

Query: 161 KFNGSLPVQL-CHLTFLRILDVAHNNLSGTIPR 192
           K    LP  L   L  L++L +  N ++  +  
Sbjct: 91  KIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRV 121

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 37/227 (16%), Positives = 81/227 (35%), Gaps = 53/227 (23%)

Query: 108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNKFNGSL 166
            R   +  +FP      ++ +  ++G+     S+   V  +    +   N  ++    SL
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNIQ-SL 56

Query: 167 PVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATIN-SSNQKNAIYYFVTRGNIVFED 225
              +   T L+ L ++HN +S   P  + + T +  ++ + N+   +             
Sbjct: 57  AG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL------------- 100

Query: 226 ASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIP-- 283
                            L   + +  N         L +L+ L+ L++ +N    K+   
Sbjct: 101 ----------NGIPSACL-SRLFLDNNELRDTDS--LIHLKNLEILSIRNN----KLKSI 143

Query: 284 ENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHL-NLSENDLSGQ 329
             +G +  +E LD   N +        ++   L  L  ++  DL+GQ
Sbjct: 144 VMLGFLSKLEVLDLHGNEI--------TNTGGLTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 26/188 (13%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           + NL    +  ++   +   +          +  N+ +       +      + +  L L
Sbjct: 23  KQNLGKQSVTDLVSQKELSGVQN-------FNGDNSNIQS-----LAGMQFFTNLKELHL 70

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           S N  S D+     +   L+ L+++ N       ++    + L  L L NN L       
Sbjct: 71  SHNQIS-DLSPL-KDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRDTDS-- 123

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179
           L +  +L  L I  N     + + V      +L +L+L  N+   +    L  L  +  +
Sbjct: 124 LIHLKNLEILSIRNN----KLKSIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177

Query: 180 DVAHNNLS 187
           D+      
Sbjct: 178 DLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 24/190 (12%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
           EL+LS+NQI  + P  D   L         L ++ N L       +    +   +  L L
Sbjct: 67  ELHLSHNQISDLSPLKDLTKLEE-------LSVNRNRLKN-----LNGIPSAC-LSRLFL 113

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
             N    D     ++  +L++L++ +N    ++   +G LS L  L L  N +       
Sbjct: 114 DNNELR-DTDS-LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTGG-- 167

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSL-PVQLCHLTFLRIL 179
           L     +  +D+              +  P L I N   +     + P  + +       
Sbjct: 168 LTRLKKVNWIDLTGQ----KCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDG 223

Query: 180 DVAHNNLSGT 189
            V       T
Sbjct: 224 CVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 33/180 (18%), Positives = 69/180 (38%), Gaps = 21/180 (11%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
            +L   +++      + +    S + +     +     +      + +L+ L+L  N  +
Sbjct: 24  QNLGKQSVTD-----LVSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQIS 76

Query: 91  GNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVG-ERF 149
            +L   +  L+ L  L +  NRL  +  +       L  L +  N     +         
Sbjct: 77  -DLS-PLKDLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNN----ELRDTDSLIHL 127

Query: 150 PRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQK 209
             L IL++R+NK   S+   L  L+ L +LD+  N ++ T    +     +  I+ + QK
Sbjct: 128 KNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 28/133 (21%)

Query: 75  NWPHLQVLNLDDNYFTGNLPIS--------------------IGTLSSLRSLHLRNNRLA 114
              +    NL     T  +                       +   ++L+ LHL +N+++
Sbjct: 17  GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS 76

Query: 115 GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLT 174
            + P  LK+ + L  L +  N     +    G     L  L L +N+   +    L HL 
Sbjct: 77  DLSP--LKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDTDS--LIHLK 128

Query: 175 FLRILDVAHNNLS 187
            L IL + +N L 
Sbjct: 129 NLEILSIRNNKLK 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 21/157 (13%)

Query: 57  SLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI-GTLSSLRSLHLRNNRL-- 113
            L L     +      +     L  LNLD N     L   +   L+ L +L L NN+L  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS 97

Query: 114 --AGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPV--- 168
              G+F   L     L  L +G N    S+P+ V +R  +L  L L +N+   S+P    
Sbjct: 98  LPLGVFD-HLTQ---LDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151

Query: 169 -QLCHLTFLRILDVAHNNLSGTIPRCI-NNFTAMATI 203
            +L +L  L +      N   ++P    +    + TI
Sbjct: 152 DKLTNLQTLSL----STNQLQSVPHGAFDRLGKLQTI 184

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 11/117 (9%)

Query: 80  QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRL----AGIFPVSLKNCSSLISLDIGEN 135
           Q+L L DN  T   P    +L +L+ L+L +N+L     G+F  SL     L  LD+G N
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD-SLTQ---LTVLDLGTN 98

Query: 136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPR 192
                +P+ V +R   L  L +  NK    LP  +  LT L  L +  N L  +IP 
Sbjct: 99  Q-LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 257 EIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFL 316
           ++   L+ L+  + L LS N    KI  ++  M ++  L    N +  +I    +    L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI-KKIENLDAVADTL 95

Query: 317 NHLNLSENDLS 327
             L +S N ++
Sbjct: 96  EELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 82  LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSI 141
           L+         +  ++ TL + + L L  N +  I   SL    +L  L +G N     I
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNL----I 82

Query: 142 PTWVG--ERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS 187
                       L  L +  N+   SL   +  L  LR+L +++N ++
Sbjct: 83  KKIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKIT 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	433
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.41
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.87
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.54
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.25
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.54
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.26
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.99
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.83
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	90.85
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	90.57
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	90.47
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	88.27
1iij_A	35	ERBB-2 receptor protein-tyrosine kinase; alpha-hel	82.6
2l9u_A	40	Receptor tyrosine-protein kinase ERBB-3; transmenb	81.62

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.6e-43  Score=365.47  Aligned_cols=353  Identities=35%  Similarity=0.525  Sum_probs=246.0

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCC-CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPF-EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      |++++|.+++.+|+....     ++ +|++|++++|.+++.++..++. ..+++|++|++++|.+++.+|..+.++++|+
T Consensus       348 L~Ls~n~l~~~~p~~l~~-----l~~~L~~L~Ls~N~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  421 (768)
T 3rgz_A          348 LDLSFNEFSGELPESLTN-----LSASLLTLDLSSNNFSGPILPNLCQ-NPKNTLQELYLQNNGFTGKIPPTLSNCSELV  421 (768)
T ss_dssp             EECCSSEEEECCCTTHHH-----HTTTCSEEECCSSEEEEECCTTTTC-STTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred             EeCcCCccCccccHHHHh-----hhcCCcEEEccCCCcCCCcChhhhh-cccCCccEEECCCCccccccCHHHhcCCCCC
Confidence            677777777666643211     22 5666666666666655554422 2245566666666666666666666666666


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN  160 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  160 (433)
                      +|++++|.+.+..|..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|
T Consensus       422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N  500 (768)
T 3rgz_A          422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNN  500 (768)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSS
T ss_pred             EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCC
Confidence            666666666666666666666666666666666666666666666666666666666555555554 5666666666666


Q ss_pred             cccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc--ccccccCCc------------ee----
Q 042476          161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA--IYYFVTRGN------------IV----  222 (433)
Q Consensus       161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~------------~~----  222 (433)
                      .+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+++.+...  ++..+....            ..    
T Consensus       501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~  580 (768)
T 3rgz_A          501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN  580 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred             ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence            666666666666666666666666666666666666666666666555321  111110000            00    


Q ss_pred             --------------------------------eecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCce
Q 042476          223 --------------------------------FEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQT  270 (433)
Q Consensus       223 --------------------------------~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  270 (433)
                                                      .........+..+..++.++.|+.|++++|.+++.+|..++++++|+.
T Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  660 (768)
T 3rgz_A          581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI  660 (768)
T ss_dssp             CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred             ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence                                            000001112333445566788999999999999999999999999999


Q ss_pred             EeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC-cC
Q 042476          271 LNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN-DL  349 (433)
Q Consensus       271 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n-~l  349 (433)
                      |+|++|+++|.+|..++.+++|+.||+++|++++.+|..+..+++|+.|++++|+++|.+|...++.++....+.|| .+
T Consensus       661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L  740 (768)
T 3rgz_A          661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL  740 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred             EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             CCCCCCCCCCCC
Q 042476          350 CGAPLPDCTEKN  361 (433)
Q Consensus       350 ~~~~~~~c~~~~  361 (433)
                      ||.|++.|....
T Consensus       741 cg~~l~~C~~~~  752 (768)
T 3rgz_A          741 CGYPLPRCDPSN  752 (768)
T ss_dssp             ESTTSCCCCSCC
T ss_pred             cCCCCcCCCCCc
Confidence            999988886544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.2e-40  Score=344.51  Aligned_cols=344  Identities=32%  Similarity=0.463  Sum_probs=212.5

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCcc-ccCCCCCCCccEEEcCCCcCcCcCCcccCCCC-C
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHL-ICNGDNKSVIISLKLSKNYFSGDIPDCWMNWP-H   78 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~   78 (433)
                      +|||++|.+++.+|.... .    +++|++|++++|.++|.+|.. +   ..+++|++|++++|.+.+.+|..+.+++ +
T Consensus       298 ~L~Ls~n~l~~~~p~~~~-~----l~~L~~L~L~~n~l~~~ip~~~l---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~  369 (768)
T 3rgz_A          298 GLDLSGNHFYGAVPPFFG-S----CSLLESLALSSNNFSGELPMDTL---LKMRGLKVLDLSFNEFSGELPESLTNLSAS  369 (768)
T ss_dssp             EEECCSSEEEECCCGGGG-G----CTTCCEEECCSSEEEEECCHHHH---TTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred             EEECcCCcCCCccchHHh-c----CCCccEEECCCCcccCcCCHHHH---hcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence            378888888887774322 1    446666777766666655543 4   3366666666666666655555555544 5


Q ss_pred             CCEEEccCCcCcccCCcccCC--CCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEE
Q 042476           79 LQVLNLDDNYFTGNLPISIGT--LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILN  156 (433)
Q Consensus        79 L~~L~L~~n~i~~~~p~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  156 (433)
                      |++|++++|.+.+..|..+..  +++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+. .+++|++|+
T Consensus       370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~  448 (768)
T 3rgz_A          370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLK  448 (768)
T ss_dssp             CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEE
T ss_pred             CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEE
Confidence            555555555555444444433  44455555555555444444444555555555555544444444433 344444444


Q ss_pred             eeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc--ccccccC-Cceeeeccee-eecc
Q 042476          157 LRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA--IYYFVTR-GNIVFEDASV-VTKG  232 (433)
Q Consensus       157 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~--~~~~~~~-~~~~~~~~~~-~~~~  232 (433)
                      +++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+++.+...  ++..+.. .......+.. ...+
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  528 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG  528 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence            4444444444444444444444444444444444444444444444444444321  1111000 0000000000 0123


Q ss_pred             ceeehhhhccceeEEEcccCcccccCCcc---------------------------------------------------
Q 042476          233 LLVEYNSILNLVRSIDISKNNFSGEIPMQ---------------------------------------------------  261 (433)
Q Consensus       233 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~---------------------------------------------------  261 (433)
                      ..+..+..+++|+.|++++|.+++.+|..                                                   
T Consensus       529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  608 (768)
T 3rgz_A          529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS  608 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred             cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence            34455666778888888888777655543                                                   


Q ss_pred             -------------------ccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476          262 -------------------LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS  322 (433)
Q Consensus       262 -------------------~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  322 (433)
                                         +..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|||+
T Consensus       609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs  688 (768)
T 3rgz_A          609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS  688 (768)
T ss_dssp             GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence                               4446789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCC-cccCccCcccccCCcCCCCC
Q 042476          323 ENDLSGQIPSS-TQLQSFGASCFSGNDLCGAP  353 (433)
Q Consensus       323 ~n~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~  353 (433)
                      +|+++|.+|.. ..++.++.+++++|+++|..
T Consensus       689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i  720 (768)
T 3rgz_A          689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI  720 (768)
T ss_dssp             SSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred             CCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence            99999999976 66788999999999998753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.9e-37  Score=301.34  Aligned_cols=303  Identities=20%  Similarity=0.151  Sum_probs=188.9

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476           26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS  105 (433)
Q Consensus        26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~  105 (433)
                      +++++|++++|++++..+..|   .++++|++|+|++|.+++..|..|.++++|++|+|++|.+....+..|.++++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  108 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEF---ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK  108 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTT---TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred             CCCcEEECCCCccceECHhHc---cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence            467777777777776665555   44677777777777777666777777777777777777776544455667777777


Q ss_pred             EEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCc
Q 042476          106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNN  185 (433)
Q Consensus       106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  185 (433)
                      |++++|.+.+..+..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus       109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             EECCCCccccCChhHccccccCCEEECCCCccceeChhhc-cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence            7777777776666667777777777777776643333333 366777777777777665444556677777777777777


Q ss_pred             CcccCCCCccccccccccccccccccccc--c-ccCCceeeecceee-eccceeehhhhccceeEEEcccCcccccCCcc
Q 042476          186 LSGTIPRCINNFTAMATINSSNQKNAIYY--F-VTRGNIVFEDASVV-TKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ  261 (433)
Q Consensus       186 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~  261 (433)
                      +.+..+..+..+++|+.|+++.+......  . ..........+... ........+..+++|+.|++++|.+++..+..
T Consensus       188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  267 (477)
T 2id5_A          188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM  267 (477)
T ss_dssp             CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred             CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence            76555566666777777666654311000  0 00000000000000 11111123445666777777777777666666


Q ss_pred             ccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC
Q 042476          262 LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS  332 (433)
Q Consensus       262 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  332 (433)
                      +..+++|+.|+|++|++++..|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+.++.
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            67777777777777777766677777777777777777777666666666777777777777777665443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.4e-37  Score=300.25  Aligned_cols=322  Identities=21%  Similarity=0.155  Sum_probs=190.9

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCc-CCcccCCCCCCCEEEccCCcCcccCCcccCCCCCc
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGD-IPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL  103 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L  103 (433)
                      ++++++|++++|.+++..+..+   .++++|++|++++|.+.+. .+..|.++++|++|++++|.+.+..|..|.++++|
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  105 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSF---SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL  105 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTT---SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred             CCccCEEEecCCccCcCChhHh---ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence            4577888888887777666666   4577788888887777643 35667777888888888887776667777778888


Q ss_pred             CEEEccCCcccccCCcc--ccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCC--CCcCEE
Q 042476          104 RSLHLRNNRLAGIFPVS--LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHL--TFLRIL  179 (433)
Q Consensus       104 ~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L  179 (433)
                      ++|++++|.+++..+..  +..+++|++|++++|.+.+..|..++..+++|++|++++|.+.+..+..+..+  .+|+.|
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L  185 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL  185 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence            88888888777544433  77777888888888877655566545567788888888877776666655544  455555


Q ss_pred             EccCCcCcccCCCC--------ccccccccccccccccccc--ccccc----CC--------------------------
Q 042476          180 DVAHNNLSGTIPRC--------INNFTAMATINSSNQKNAI--YYFVT----RG--------------------------  219 (433)
Q Consensus       180 ~l~~n~~~~~~p~~--------~~~l~~L~~L~l~~~~~~~--~~~~~----~~--------------------------  219 (433)
                      ++++|.+.+..+..        +..+++|+.|+++.+....  +..+.    ..                          
T Consensus       186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  265 (455)
T 3v47_A          186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD  265 (455)
T ss_dssp             ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred             ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence            55555554322221        1133445555544442110  00000    00                          


Q ss_pred             ----------ceeeeccee-eeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCC
Q 042476          220 ----------NIVFEDASV-VTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN  288 (433)
Q Consensus       220 ----------~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  288 (433)
                                ......+.. ......+..+..+++|++|++++|.+++..|..+.++++|++|+|++|++++..+..+..
T Consensus       266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  345 (455)
T 3v47_A          266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN  345 (455)
T ss_dssp             TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred             ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence                      000000000 001112233444556666666666666555556666666666666666665555556666


Q ss_pred             CCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-cccCccCcccccCCcC
Q 042476          289 MRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDL  349 (433)
Q Consensus       289 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l  349 (433)
                      +++|+.|++++|++++..|..+..+++|+.|++++|++++..+.. ..++.++.+++++|++
T Consensus       346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            666666666666666555666666666666666666666543332 3455566666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=318.57  Aligned_cols=84  Identities=24%  Similarity=0.345  Sum_probs=53.6

Q ss_pred             cccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccC
Q 042476          261 QLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFG  340 (433)
Q Consensus       261 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~  340 (433)
                      .|.++++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+.  ++|+.|++++|++++.+|..  +..+.
T Consensus       475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~  550 (844)
T 3j0a_A          475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLS  550 (844)
T ss_dssp             CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCC
T ss_pred             hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcC
Confidence            355556666666666666666666666666677777776666655555444  56667777777776665543  45666


Q ss_pred             cccccCCc
Q 042476          341 ASCFSGND  348 (433)
Q Consensus       341 ~~~~~~n~  348 (433)
                      .+++++|+
T Consensus       551 ~l~l~~Np  558 (844)
T 3j0a_A          551 VLDITHNK  558 (844)
T ss_dssp             EEEEEEEC
T ss_pred             EEEecCCC
Confidence            77777773

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.9e-37  Score=298.88  Aligned_cols=308  Identities=19%  Similarity=0.199  Sum_probs=249.4

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCC-ccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSII-HLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHL   79 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L   79 (433)
                      +|||++|.+++..|+... .    +++|++|++++|.+.+.++ ..+   .++++|++|++++|.+.+..|..|.++++|
T Consensus        34 ~L~Ls~n~i~~~~~~~~~-~----l~~L~~L~L~~n~~~~~i~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  105 (455)
T 3v47_A           34 YVDLSLNSIAELNETSFS-R----LQDLQFLKVEQQTPGLVIRNNTF---RGLSSLIILKLDYNQFLQLETGAFNGLANL  105 (455)
T ss_dssp             EEECCSSCCCEECTTTTS-S----CTTCCEEECCCCSTTCEECTTTT---TTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred             EEEecCCccCcCChhHhc-c----CccccEEECcCCcccceECcccc---cccccCCEEeCCCCccCccChhhccCcccC
Confidence            489999999988774322 2    6789999999999976654 445   558999999999999998889999999999


Q ss_pred             CEEEccCCcCcccCCcc--cCCCCCcCEEEccCCcccccCCcc-ccCCCCCcEEECcCccccccCChhhhh---------
Q 042476           80 QVLNLDDNYFTGNLPIS--IGTLSSLRSLHLRNNRLAGIFPVS-LKNCSSLISLDIGENDFFGSIPTWVGE---------  147 (433)
Q Consensus        80 ~~L~L~~n~i~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~---------  147 (433)
                      ++|++++|.+.+..+..  |.++++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..         
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L  185 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL  185 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence            99999999998755554  899999999999999999887776 889999999999999986655544431         


Q ss_pred             ------------------------cCCCccEEEeeCccccccCCcccc--------------------------------
Q 042476          148 ------------------------RFPRLLILNLRSNKFNGSLPVQLC--------------------------------  171 (433)
Q Consensus       148 ------------------------~l~~L~~L~L~~n~l~~~~~~~l~--------------------------------  171 (433)
                                              .+++|++|++++|.+.+..+..+.                                
T Consensus       186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  265 (455)
T 3v47_A          186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD  265 (455)
T ss_dssp             ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred             ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence                                    235677777777766543322211                                


Q ss_pred             -------CCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccce
Q 042476          172 -------HLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLV  244 (433)
Q Consensus       172 -------~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  244 (433)
                             ..++|+.|++++|.+.+..|..+..+++|+.|+++.+..                    ....+..+..+++|
T Consensus       266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--------------------~~~~~~~~~~l~~L  325 (455)
T 3v47_A          266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI--------------------NKIDDNAFWGLTHL  325 (455)
T ss_dssp             TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--------------------CEECTTTTTTCTTC
T ss_pred             ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc--------------------cccChhHhcCcccC
Confidence                   124677788888888777777788888888888777641                    12223345568899


Q ss_pred             eEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCC
Q 042476          245 RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEN  324 (433)
Q Consensus       245 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  324 (433)
                      ++|++++|.+++..+..+..+++|++|+|++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            99999999999888889999999999999999999888999999999999999999999877778899999999999999


Q ss_pred             cCcccCCCCccc
Q 042476          325 DLSGQIPSSTQL  336 (433)
Q Consensus       325 ~l~~~~p~~~~~  336 (433)
                      +++|.+|....+
T Consensus       406 ~l~~~~~~~~~l  417 (455)
T 3v47_A          406 PWDCSCPRIDYL  417 (455)
T ss_dssp             CBCCCTTTTHHH
T ss_pred             CcccCCCcchHH
Confidence            999999865433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.7e-36  Score=280.64  Aligned_cols=259  Identities=29%  Similarity=0.580  Sum_probs=231.3

Q ss_pred             CCccEEEcCCCcCcC--cCCcccCCCCCCCEEEccC-CcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcE
Q 042476           53 SVIISLKLSKNYFSG--DIPDCWMNWPHLQVLNLDD-NYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLIS  129 (433)
Q Consensus        53 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  129 (433)
                      .+++.|++++|.+.+  .+|..|.++++|++|++++ |.+.+.+|..|.++++|++|++++|.+.+..|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            678999999999988  7888999999999999994 8888888999999999999999999998888888999999999


Q ss_pred             EECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCC-CcCEEEccCCcCcccCCCCccccccccccccccc
Q 042476          130 LDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLT-FLRILDVAHNNLSGTIPRCINNFTAMATINSSNQ  208 (433)
Q Consensus       130 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~  208 (433)
                      |++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+..|..+..+           
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-----------  197 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-----------  197 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-----------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-----------
Confidence            99999998777887776 799999999999999888898998888 89999999999887777655432           


Q ss_pred             cccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCC
Q 042476          209 KNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN  288 (433)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  288 (433)
                                                       + |+.|++++|.+++..|..+..+++|+.|+|++|++++.++. +..
T Consensus       198 ---------------------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~  242 (313)
T 1ogq_A          198 ---------------------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL  242 (313)
T ss_dssp             ---------------------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC
T ss_pred             ---------------------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc
Confidence                                             2 77889999999988899999999999999999999877666 788


Q ss_pred             CCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC-cCCCCCCCCCC
Q 042476          289 MRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN-DLCGAPLPDCT  358 (433)
Q Consensus       289 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~~~c~  358 (433)
                      +++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|....++.++.+++++| .+||.|.+.|.
T Consensus       243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C~  313 (313)
T 1ogq_A          243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCCC
Confidence            99999999999999999999999999999999999999999999989999999999999 59998887773

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=292.69  Aligned_cols=316  Identities=19%  Similarity=0.163  Sum_probs=255.6

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476           28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH  107 (433)
Q Consensus        28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~  107 (433)
                      -+.++.++++++. +|..+     .++++.|++++|++++..+..|.++++|++|+|++|.+.+..|.+|.++++|++|+
T Consensus        13 ~~~v~c~~~~l~~-ip~~~-----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   86 (477)
T 2id5_A           13 DRAVLCHRKRFVA-VPEGI-----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG   86 (477)
T ss_dssp             TTEEECCSCCCSS-CCSCC-----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEEEeCCCCcCc-CCCCC-----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence            3578888888874 55555     56899999999999988899999999999999999999988899999999999999


Q ss_pred             ccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476          108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                      +++|.+....+..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus        87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             CCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc-cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            99999997777788999999999999999965555554 48999999999999999888889999999999999999998


Q ss_pred             ccCCCCcccccccccccccccccccccc--cc-CCceeeecceee-eccceeehhhhccceeEEEcccCcccccCCcccc
Q 042476          188 GTIPRCINNFTAMATINSSNQKNAIYYF--VT-RGNIVFEDASVV-TKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLT  263 (433)
Q Consensus       188 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~--~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~  263 (433)
                      +..+..+..+++|+.|+++.+.......  +. ........+... .....+.......+|+.|++++|.+++..+..+.
T Consensus       166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  245 (477)
T 2id5_A          166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR  245 (477)
T ss_dssp             SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred             ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence            6555678899999999988765322111  00 000000001000 0111111222234799999999999865556788


Q ss_pred             CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-cccCccCcc
Q 042476          264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGAS  342 (433)
Q Consensus       264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~l~~~  342 (433)
                      .+++|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+.. ..++.++.+
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  325 (477)
T 2id5_A          246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL  325 (477)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred             CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence            9999999999999999888888999999999999999999988999999999999999999999755543 456788999


Q ss_pred             cccCCcCC
Q 042476          343 CFSGNDLC  350 (433)
Q Consensus       343 ~~~~n~l~  350 (433)
                      ++++|++.
T Consensus       326 ~l~~N~l~  333 (477)
T 2id5_A          326 ILDSNPLA  333 (477)
T ss_dssp             ECCSSCEE
T ss_pred             EccCCCcc
Confidence            99999663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.6e-35  Score=298.13  Aligned_cols=340  Identities=18%  Similarity=0.141  Sum_probs=213.5

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +|||++|.+++..|.... .    +++|++|++++|.+++..|..|   .++++|++|++++|.+++..|..|.++++|+
T Consensus        36 ~L~Ls~n~l~~~~~~~~~-~----l~~L~~L~Ls~n~l~~i~~~~~---~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  107 (606)
T 3vq2_A           36 NIDLSFNPLKILKSYSFS-N----FSELQWLDLSRCEIETIEDKAW---HGLHHLSNLILTGNPIQSFSPGSFSGLTSLE  107 (606)
T ss_dssp             EEECTTSCCCEECTTTTT-T----CTTCCEEECTTCCCCEECTTTT---TTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred             EEECCCCCcCEeChhhcc-C----CccCcEEeCCCCcccccCHHHh---hchhhcCEeECCCCcccccChhhcCCcccCC
Confidence            367788888766553221 1    5567777777777776666665   4477777777777777766677777777777


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccc-cCCccccCCCCCcEEECcCccccccCChhh--------------
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAG-IFPVSLKNCSSLISLDIGENDFFGSIPTWV--------------  145 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--------------  145 (433)
                      +|++++|.+.+..+..|+++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+..+              
T Consensus       108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~  187 (606)
T 3vq2_A          108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD  187 (606)
T ss_dssp             EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred             EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceee
Confidence            77777777765555667777777777777777664 346667777777777766665532211100              


Q ss_pred             -------------h------------------------------------------------------------------
Q 042476          146 -------------G------------------------------------------------------------------  146 (433)
Q Consensus       146 -------------~------------------------------------------------------------------  146 (433)
                                   +                                                                  
T Consensus       188 l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  267 (606)
T 3vq2_A          188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR  267 (606)
T ss_dssp             CTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred             ccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence                         0                                                                  


Q ss_pred             -------------------------------------------------------------------------------h
Q 042476          147 -------------------------------------------------------------------------------E  147 (433)
Q Consensus       147 -------------------------------------------------------------------------------~  147 (433)
                                                                                                     .
T Consensus       268 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~  347 (606)
T 3vq2_A          268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV  347 (606)
T ss_dssp             ECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCC
T ss_pred             ccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhc
Confidence                                                                                           0


Q ss_pred             cCCCccEEEeeCcccccc--CCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccccc---c-cCCce
Q 042476          148 RFPRLLILNLRSNKFNGS--LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYF---V-TRGNI  221 (433)
Q Consensus       148 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~---~-~~~~~  221 (433)
                      .+++|++|++++|.+.+.  .+..+..+++|++|++++|.+. .+|..+..+++|+.|+++.+.......   + .....
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  426 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL  426 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence            123444444444444433  2556677888999999999887 566888889999999888775221110   0 00000


Q ss_pred             eeeccee-eeccceeehhhhccceeEEEcccCcccc-cCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcC
Q 042476          222 VFEDASV-VTKGLLVEYNSILNLVRSIDISKNNFSG-EIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFST  299 (433)
Q Consensus       222 ~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  299 (433)
                      ....+.. ......+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++..|..+..+++|+.|++++
T Consensus       427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence            0000000 0112223344556677777777777765 3566777777777777777777766777777777777777777


Q ss_pred             CcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccC-ccCcccccCCcC
Q 042476          300 NRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQ-SFGASCFSGNDL  349 (433)
Q Consensus       300 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~l~~~~~~~n~l  349 (433)
                      |++++.+|..+..+++|+.|++++|+++...+....++ .++.+++++|++
T Consensus       507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             SCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             CcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence            77777667777777777777777777774333334444 366677777755

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6e-36  Score=304.42  Aligned_cols=314  Identities=19%  Similarity=0.255  Sum_probs=225.0

Q ss_pred             CEEeecccCccc-----------------CCCCCC-CCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCC
Q 042476            1 ELNLSNNQIYGV-----------------IPYFDH-RPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSK   62 (433)
Q Consensus         1 ~L~ls~n~l~~~-----------------~~~~~~-~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~   62 (433)
                      +|||++|.|++.                 +|+... ..    +++|++|++++|.+.+.+|..+   .++++|++|++++
T Consensus       210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~----l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~  282 (636)
T 4eco_A          210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN----LKDLTDVEVYNCPNLTKLPTFL---KALPEMQLINVAC  282 (636)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG----CTTCCEEEEECCTTCSSCCTTT---TTCSSCCEEECTT
T ss_pred             EEECcCCccccccccccccccccchhcccCchhhhhcc----cCCCCEEEecCCcCCccChHHH---hcCCCCCEEECcC
Confidence            489999999985                 663211 02    6689999999999999999887   5699999999999


Q ss_pred             Cc-CcC-cCCcccCCC------CCCCEEEccCCcCcccCCc--ccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476           63 NY-FSG-DIPDCWMNW------PHLQVLNLDDNYFTGNLPI--SIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI  132 (433)
Q Consensus        63 n~-l~~-~~~~~~~~l------~~L~~L~L~~n~i~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  132 (433)
                      |+ +++ .+|..+.++      ++|++|++++|.++ .+|.  .++++++|++|++++|.+.+.+| .+..+++|++|++
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence            98 887 788887776      89999999999999 7888  89999999999999999998888 8899999999999


Q ss_pred             cCccccccCChhhhhcCCC-ccEEEeeCccccccCCccccCCC--CcCEEEccCCcCcccCCCCcc-------ccccccc
Q 042476          133 GENDFFGSIPTWVGERFPR-LLILNLRSNKFNGSLPVQLCHLT--FLRILDVAHNNLSGTIPRCIN-------NFTAMAT  202 (433)
Q Consensus       133 ~~n~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~p~~~~-------~l~~L~~  202 (433)
                      ++|.+. .+|..+. .+++ |++|++++|.+. .+|..+..++  +|+.|++++|.+.+..|..+.       .+++|+.
T Consensus       361 ~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~  437 (636)
T 4eco_A          361 AYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS  437 (636)
T ss_dssp             CSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred             CCCccc-cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence            999985 8888876 7888 999999999998 7788777655  899999999999988888887       7788999


Q ss_pred             cccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcc-ccCC-------ccCceEeCc
Q 042476          203 INSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ-LTNL-------EGLQTLNLS  274 (433)
Q Consensus       203 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~-~~~l-------~~L~~L~Ls  274 (433)
                      |+++.+...                    ......+..+++|+.|++++|.++ .+|.. +...       ++|+.|+|+
T Consensus       438 L~Ls~N~l~--------------------~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls  496 (636)
T 4eco_A          438 INLSNNQIS--------------------KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLR  496 (636)
T ss_dssp             EECCSSCCC--------------------SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECC
T ss_pred             EECcCCccC--------------------cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECc
Confidence            988887522                    111112223445555555555555 22222 2211       155555555


Q ss_pred             CcccccCCCcccC--CCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC------cCCcCcccCCCC-cccCccCccccc
Q 042476          275 HNFFVGKIPENIG--NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL------SENDLSGQIPSS-TQLQSFGASCFS  345 (433)
Q Consensus       275 ~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L------~~n~l~~~~p~~-~~~~~l~~~~~~  345 (433)
                      +|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++      ++|++.+.+|.. ..++.++.++++
T Consensus       497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG  574 (636)
T ss_dssp             SSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             CCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence            55555 4444444  55555555555555554 4555555555555555      234444444432 344555555555


Q ss_pred             CCcC
Q 042476          346 GNDL  349 (433)
Q Consensus       346 ~n~l  349 (433)
                      +|.+
T Consensus       575 ~N~l  578 (636)
T 4eco_A          575 SNDI  578 (636)
T ss_dssp             SSCC
T ss_pred             CCcC
Confidence            5555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.2e-36  Score=307.60  Aligned_cols=296  Identities=18%  Similarity=0.215  Sum_probs=215.9

Q ss_pred             CCccccCCCCCCCccEEEcCCCcCcCc-----------------CCcccC--CCCCCCEEEccCCcCcccCCcccCCCCC
Q 042476           42 IIHLICNGDNKSVIISLKLSKNYFSGD-----------------IPDCWM--NWPHLQVLNLDDNYFTGNLPISIGTLSS  102 (433)
Q Consensus        42 ~~~~~~~~~~~~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~i~~~~p~~~~~l~~  102 (433)
                      +|..+   .++++|++|++++|.+++.                 +|..+.  ++++|++|++++|.+.+.+|..|+++++
T Consensus       198 ip~~l---~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  274 (636)
T 4eco_A          198 VSKAV---MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE  274 (636)
T ss_dssp             ECGGG---GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred             CCHHH---hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence            45555   5588889999998888875                 888888  8889999999998888888888888899


Q ss_pred             cCEEEccCCc-ccc-cCCccccCC------CCCcEEECcCccccccCCh--hhhhcCCCccEEEeeCccccccCCccccC
Q 042476          103 LRSLHLRNNR-LAG-IFPVSLKNC------SSLISLDIGENDFFGSIPT--WVGERFPRLLILNLRSNKFNGSLPVQLCH  172 (433)
Q Consensus       103 L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  172 (433)
                      |++|++++|. +++ .+|..++.+      ++|++|++++|.+. .+|.  .+. .+++|++|++++|.+.+.+| .+..
T Consensus       275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~  351 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGS  351 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEE
T ss_pred             CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCC
Confidence            9999999887 877 777777765      88899999988885 7877  555 78889999999888887788 8888


Q ss_pred             CCCcCEEEccCCcCcccCCCCcccccc-cccccccccccc-ccccccCC---ceeeecceee-eccceeehhh-------
Q 042476          173 LTFLRILDVAHNNLSGTIPRCINNFTA-MATINSSNQKNA-IYYFVTRG---NIVFEDASVV-TKGLLVEYNS-------  239 (433)
Q Consensus       173 l~~L~~L~l~~n~~~~~~p~~~~~l~~-L~~L~l~~~~~~-~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~-------  239 (433)
                      +++|++|++++|.+. .+|..+..+++ |+.|+++.+... ++..+...   ......+... ..+..+..+.       
T Consensus       352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~  430 (636)
T 4eco_A          352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF  430 (636)
T ss_dssp             EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred             CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence            888888999888888 78888888888 888888877532 11111100   0111011000 1111222222       


Q ss_pred             hccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCC-C-------CCCCEEeCcCCcCCCCCCcccc
Q 042476          240 ILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN-M-------RSIESLDFSTNRLFGRIPQSMS  311 (433)
Q Consensus       240 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-l-------~~L~~L~Ls~n~l~~~~~~~l~  311 (433)
                      .+.+|+.|++++|.+++..+..+..+++|+.|+|++|+++ .+|..... .       ++|+.|++++|+++ .+|..+.
T Consensus       431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  508 (636)
T 4eco_A          431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR  508 (636)
T ss_dssp             CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS
T ss_pred             cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh
Confidence            4557888888888888444444556788888888888887 55543322 2       28888999988887 6777776


Q ss_pred             --CCCCCCeeeCcCCcCcccCCCCcccCccCcccccC
Q 042476          312 --SLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSG  346 (433)
Q Consensus       312 --~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~  346 (433)
                        .+++|+.|++++|++++.++....++.++.+++++
T Consensus       509 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~  545 (636)
T 4eco_A          509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN  545 (636)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCS
T ss_pred             hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCC
Confidence              88889999999999887333446677888888854

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1e-34  Score=294.87  Aligned_cols=341  Identities=20%  Similarity=0.138  Sum_probs=242.1

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +|||++|.|++..|... +.    +++|++|++++|.+++..|..|   .++++|++|++++|.+.+..|..|.++++|+
T Consensus        37 ~L~Ls~n~i~~~~~~~~-~~----l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  108 (606)
T 3t6q_A           37 CLEFSFNVLPTIQNTTF-SR----LINLTFLDLTRCQIYWIHEDTF---QSQHRLDTLVLTANPLIFMAETALSGPKALK  108 (606)
T ss_dssp             EEECTTCCCSEECTTTS-TT----CTTCSEEECTTCCCCEECTTTT---TTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred             EEEccCCccCcCChhHh-cc----CccceEEECCCCccceeChhhc---cCccccCeeeCCCCcccccChhhhccccccc
Confidence            47889999987766422 22    6688888888888888777777   5588888888888888877888888888888


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCcc--EEEee
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLL--ILNLR  158 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~--~L~L~  158 (433)
                      +|++++|.+.+..+..|.++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..+. .+++|+  .|+++
T Consensus       109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~  187 (606)
T 3t6q_A          109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLN  187 (606)
T ss_dssp             EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECT
T ss_pred             EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecC
Confidence            888888888866677788888888888888888765434445578888888888877433333333 566666  55555


Q ss_pred             Cccccc--------------------------------------------------------------------------
Q 042476          159 SNKFNG--------------------------------------------------------------------------  164 (433)
Q Consensus       159 ~n~l~~--------------------------------------------------------------------------  164 (433)
                      +|.+.+                                                                          
T Consensus       188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~  267 (606)
T 3t6q_A          188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF  267 (606)
T ss_dssp             TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred             CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence            555443                                                                          


Q ss_pred             -cCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccc--cccc-CCceeeecceee-ec-cceeehh
Q 042476          165 -SLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIY--YFVT-RGNIVFEDASVV-TK-GLLVEYN  238 (433)
Q Consensus       165 -~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--~~~~-~~~~~~~~~~~~-~~-~~~~~~~  238 (433)
                       ..+..+..+++|++|++++|.++ .+|..+..+++|+.|+++.+.....  ..+. ........+... .. ......+
T Consensus       268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (606)
T 3t6q_A          268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL  346 (606)
T ss_dssp             SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred             ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence             23334666777888888888777 6777777778888887776643211  0100 000111111110 01 1122335


Q ss_pred             hhccceeEEEcccCcccccC--CccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCc-cccCCCC
Q 042476          239 SILNLVRSIDISKNNFSGEI--PMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQ-SMSSLSF  315 (433)
Q Consensus       239 ~~~~~L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~  315 (433)
                      ..+++|++|++++|.+++..  +..+..+++|++|++++|++.+..|..+..+++|+.|++++|++++..+. .+..+++
T Consensus       347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  426 (606)
T 3t6q_A          347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL  426 (606)
T ss_dssp             TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred             hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence            66788888888888887665  67788888899999999988878888888889999999999988776554 4788889


Q ss_pred             CCeeeCcCCcCcccCCCC-cccCccCcccccCCcCCC
Q 042476          316 LNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDLCG  351 (433)
Q Consensus       316 L~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l~~  351 (433)
                      |+.|++++|.+++..|.. ..++.++.+++++|.+.+
T Consensus       427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred             CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence            999999999988776653 567788888999987765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.1e-34  Score=294.58  Aligned_cols=276  Identities=22%  Similarity=0.268  Sum_probs=153.1

Q ss_pred             ccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcC
Q 042476           55 IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGE  134 (433)
Q Consensus        55 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  134 (433)
                      |+.|++++|.+++..+..|.++++|++|++++|.++ .+|..+.++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            444444444444444445566666666666666666 5566666666666666666666655566666666666666666


Q ss_pred             ccccccCChhhhhcCCCccEEEeeCccccccC--CccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccc
Q 042476          135 NDFFGSIPTWVGERFPRLLILNLRSNKFNGSL--PVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI  212 (433)
Q Consensus       135 n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~  212 (433)
                      |.+.+.++...+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..|..+..+++|+.|+++.+....
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  414 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV  414 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred             CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence            66655555554445666666666666666443  5556666666666666666665566666666666666666554110


Q ss_pred             cccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccC---CCcccCCC
Q 042476          213 YYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGK---IPENIGNM  289 (433)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l~~l  289 (433)
                                         ......+..+++|+.|++++|.+++..|..+..+++|++|++++|++++.   .+..+..+
T Consensus       415 -------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l  475 (606)
T 3t6q_A          415 -------------------KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL  475 (606)
T ss_dssp             -------------------CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred             -------------------cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence                               00111233345555555555555555555555555555555555555431   12334555


Q ss_pred             CCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-cccCccCcccccCCcCCC
Q 042476          290 RSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDLCG  351 (433)
Q Consensus       290 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l~~  351 (433)
                      ++|+.|++++|++++..|..+..+++|+.|++++|++++..|.. ..++.+ .+++++|.+.+
T Consensus       476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence            55555555555555555555555555555555555555444322 233334 44555554443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.4e-33  Score=290.34  Aligned_cols=202  Identities=16%  Similarity=0.089  Sum_probs=115.1

Q ss_pred             cCCCccEEEeeCccccccCC-ccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccc----ccccc-CCce
Q 042476          148 RFPRLLILNLRSNKFNGSLP-VQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI----YYFVT-RGNI  221 (433)
Q Consensus       148 ~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~----~~~~~-~~~~  221 (433)
                      .+++|+.|++++|.+.+.++ ..+.++++|+.|++++|.+.+..+..+..+++|+.|++..+....    +..+. ....
T Consensus       403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L  482 (680)
T 1ziw_A          403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL  482 (680)
T ss_dssp             TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred             CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence            45555555555555554333 345555555555555555554444455555555555544433110    00000 0000


Q ss_pred             eeeccee-eeccceeehhhhccceeEEEcccCcccccCC--------ccccCCccCceEeCcCcccccCCCcccCCCCCC
Q 042476          222 VFEDASV-VTKGLLVEYNSILNLVRSIDISKNNFSGEIP--------MQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI  292 (433)
Q Consensus       222 ~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  292 (433)
                      ...++.. .........+..+++|++|++++|.+++..+        ..+.++++|+.|+|++|+++...+..|..+++|
T Consensus       483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L  562 (680)
T 1ziw_A          483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL  562 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence            0000000 0112222334556777888888887765321        236677788888888888774444567778888


Q ss_pred             CEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCc--ccCccCcccccCCcC
Q 042476          293 ESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSST--QLQSFGASCFSGNDL  349 (433)
Q Consensus       293 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~~~l~~~~~~~n~l  349 (433)
                      +.|++++|++++..+..+..+++|+.|++++|++++..+...  .++.++.+++++|++
T Consensus       563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~  621 (680)
T 1ziw_A          563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF  621 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred             ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence            888888888876666667778888888888888876555432  466777777777754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.4e-34  Score=282.77  Aligned_cols=144  Identities=19%  Similarity=0.104  Sum_probs=110.9

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +||+++|.++ .+|.-    +   .+++++|++++|.+++..+..+   .++++|++|++++|++++..|..|.++++|+
T Consensus         4 ~l~ls~n~l~-~ip~~----~---~~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~   72 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKD----L---SQKTTILNISQNYISELWTSDI---LSLSKLRILIISHNRIQYLDISVFKFNQELE   72 (520)
T ss_dssp             EEECTTSCCS-SCCCS----C---CTTCSEEECCSSCCCCCCHHHH---TTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred             eEecCCCCcc-ccccc----c---cccccEEECCCCcccccChhhc---cccccccEEecCCCccCCcChHHhhcccCCC
Confidence            4899999999 56631    1   2579999999999988777777   5588999999999999888888899999999


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccc-cCCccccCCCCCcEEECcCccccccCChhhhhcCCCc--cEEEe
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAG-IFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRL--LILNL  157 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L--~~L~L  157 (433)
                      +|++++|+++ .+|..  .+++|++|++++|.+++ ..|..++.+++|++|++++|.+.+   .. +..+++|  ++|++
T Consensus        73 ~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           73 YLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLL  145 (520)
T ss_dssp             EEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEE
T ss_pred             EEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEe
Confidence            9999999888 46655  78899999999998886 367888888899998888887743   11 1234444  66666


Q ss_pred             eCccc
Q 042476          158 RSNKF  162 (433)
Q Consensus       158 ~~n~l  162 (433)
                      ++|.+
T Consensus       146 ~~n~l  150 (520)
T 2z7x_B          146 VLGET  150 (520)
T ss_dssp             EECTT
T ss_pred             ecccc
Confidence            55555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.5e-34  Score=285.93  Aligned_cols=340  Identities=21%  Similarity=0.162  Sum_probs=208.5

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +|||++|.+++..+.... .    +++|++|++++|++++..+..+   .++++|++|++++|.+++..|..|.++++|+
T Consensus        32 ~L~Ls~n~l~~~~~~~~~-~----l~~L~~L~Ls~n~i~~i~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (570)
T 2z63_A           32 NLDLSFNPLRHLGSYSFF-S----FPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  103 (570)
T ss_dssp             EEECCSCCCCEECTTTTT-T----CSSCCEEECTTCCCCEECTTTT---TTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             EEEccCCccCccChhHhh-C----CCCceEEECCCCcCCccCcccc---cCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence            378888888876553222 1    5578888888888777666666   4577888888888877766667777777777


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccc-cCCccccCCCCCcEEECcCccccccCChhh--------------
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAG-IFPVSLKNCSSLISLDIGENDFFGSIPTWV--------------  145 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--------------  145 (433)
                      +|++++|.+....+..|+++++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..+              
T Consensus       104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~  183 (570)
T 2z63_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD  183 (570)
T ss_dssp             EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred             cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence            77777777775444467777777777777777765 356777777777777777765532211110              


Q ss_pred             --------------------------------------------------------------------------------
Q 042476          146 --------------------------------------------------------------------------------  145 (433)
Q Consensus       146 --------------------------------------------------------------------------------  145 (433)
                                                                                                      
T Consensus       184 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             CTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             cCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence                                                                                            


Q ss_pred             --------------hhcCCCccEEEeeCccccccCCccc-----------------------------------------
Q 042476          146 --------------GERFPRLLILNLRSNKFNGSLPVQL-----------------------------------------  170 (433)
Q Consensus       146 --------------~~~l~~L~~L~L~~n~l~~~~~~~l-----------------------------------------  170 (433)
                                    +..+++|++|++++|.+. .+|..+                                         
T Consensus       264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~  342 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS  342 (570)
T ss_dssp             EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred             hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence                          112345555555555443 222211                                         


Q ss_pred             -cCCCCcCEEEccCCcCcccC--CCCccccccccccccccccccccc-cc-cCCceeeecceee-ecc-ceeehhhhccc
Q 042476          171 -CHLTFLRILDVAHNNLSGTI--PRCINNFTAMATINSSNQKNAIYY-FV-TRGNIVFEDASVV-TKG-LLVEYNSILNL  243 (433)
Q Consensus       171 -~~l~~L~~L~l~~n~~~~~~--p~~~~~l~~L~~L~l~~~~~~~~~-~~-~~~~~~~~~~~~~-~~~-~~~~~~~~~~~  243 (433)
                       ..+++|++|++++|.+.+..  +..+..+++|+.|+++.+...... .+ .........+... ... .....+..+++
T Consensus       343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence             35678888889888887443  567788899999998887522110 00 0000000000000 001 11123445566


Q ss_pred             eeEEEcccCcccccCCccccCCccCceEeCcCcccc-cCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476          244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFV-GKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS  322 (433)
Q Consensus       244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  322 (433)
                      |++|++++|.+++..|..+.++++|+.|++++|+++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|+++
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence            666666666666666666666666666666666665 4566666666666666666666666666666666666667776


Q ss_pred             CCcCcccCCCC-cccCccCcccccCCcC
Q 042476          323 ENDLSGQIPSS-TQLQSFGASCFSGNDL  349 (433)
Q Consensus       323 ~n~l~~~~p~~-~~~~~l~~~~~~~n~l  349 (433)
                      +|++++.+|.. ..++.++.+++++|++
T Consensus       503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          503 SNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            66666654432 4455666666666655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.1e-34  Score=269.81  Aligned_cols=253  Identities=23%  Similarity=0.394  Sum_probs=229.8

Q ss_pred             CCccEEEccCCcccc--cCCccccCCCCCCCccEEEcCC-CcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCC
Q 042476           26 FEFGLLDLSNNALSG--SIIHLICNGDNKSVIISLKLSK-NYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSS  102 (433)
Q Consensus        26 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~  102 (433)
                      .+++.|++++|.+++  .+|..+   .++++|++|++++ |.+.+.+|..|.++++|++|++++|.+.+..|..|.++++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l---~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSL---ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG---GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhH---hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            589999999999998  888888   5599999999995 9999999999999999999999999999999999999999


Q ss_pred             cCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCC-CccEEEeeCccccccCCccccCCCCcCEEEc
Q 042476          103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP-RLLILNLRSNKFNGSLPVQLCHLTFLRILDV  181 (433)
Q Consensus       103 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  181 (433)
                      |++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .++ +|++|++++|.+.+.+|..+..++ |+.|++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L  204 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL  204 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence            99999999999999999999999999999999999889999888 676 999999999999999999999987 999999


Q ss_pred             cCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcc
Q 042476          182 AHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ  261 (433)
Q Consensus       182 ~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~  261 (433)
                      ++|.+.+..|..+..+                                            ++|+.|++++|.+++..|. 
T Consensus       205 s~N~l~~~~~~~~~~l--------------------------------------------~~L~~L~L~~N~l~~~~~~-  239 (313)
T 1ogq_A          205 SRNMLEGDASVLFGSD--------------------------------------------KNTQKIHLAKNSLAFDLGK-  239 (313)
T ss_dssp             CSSEEEECCGGGCCTT--------------------------------------------SCCSEEECCSSEECCBGGG-
T ss_pred             cCCcccCcCCHHHhcC--------------------------------------------CCCCEEECCCCceeeecCc-
Confidence            9999987766655544                                            4478888899988866665 


Q ss_pred             ccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCccc
Q 042476          262 LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQ  329 (433)
Q Consensus       262 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  329 (433)
                      +..+++|++|+|++|++++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..+.
T Consensus       240 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            788899999999999999999999999999999999999999999886 8899999999999984443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=296.85  Aligned_cols=301  Identities=19%  Similarity=0.155  Sum_probs=207.8

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcC-CcccCCCCCCCEEEccCCcCcccCCcccCCCCCc
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDI-PDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL  103 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L  103 (433)
                      ++++++|++++|.+++..+..+   .++++|++|++++|...+.+ |..|.++++|++|+|++|.+.+..|.+|.++++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~---~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L   99 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSF---PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL   99 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSC---SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred             CCCcCEEECCCCcCCccChhHC---cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence            4578888888888877777666   45788888888887544343 6778888888888888888887777788888888


Q ss_pred             CEEEccCCcccccCCcc--ccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCC--CCcCEE
Q 042476          104 RSLHLRNNRLAGIFPVS--LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHL--TFLRIL  179 (433)
Q Consensus       104 ~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L  179 (433)
                      ++|++++|.+.+..+..  +..+++|++|++++|.+.+..+...+.++++|++|++++|.+.+..+..+..+  ++|+.|
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L  179 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF  179 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred             CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence            88888888877655544  77788888888888877554443344478888888888888776666666665  677777


Q ss_pred             EccCCcCcccCCCCcccccc------cccccccccccc--ccccccC---------------------------------
Q 042476          180 DVAHNNLSGTIPRCINNFTA------MATINSSNQKNA--IYYFVTR---------------------------------  218 (433)
Q Consensus       180 ~l~~n~~~~~~p~~~~~l~~------L~~L~l~~~~~~--~~~~~~~---------------------------------  218 (433)
                      ++++|.+.+..|..+..+.+      |+.|+++.+...  .+..+..                                 
T Consensus       180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~  259 (844)
T 3j0a_A          180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT  259 (844)
T ss_dssp             EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred             ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence            88777777666666555544      677776665211  0000000                                 


Q ss_pred             ------Cceeeecce-eeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCC
Q 042476          219 ------GNIVFEDAS-VVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRS  291 (433)
Q Consensus       219 ------~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  291 (433)
                            .......+. .......+..+..+++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++
T Consensus       260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  339 (844)
T 3j0a_A          260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK  339 (844)
T ss_dssp             TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred             hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence                  000000000 0011122334556777888888888887777777888888888888888887777777888888


Q ss_pred             CCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcc
Q 042476          292 IESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG  328 (433)
Q Consensus       292 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  328 (433)
                      |+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus       340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            8888888888877677777778888888888887774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.6e-34  Score=294.89  Aligned_cols=313  Identities=17%  Similarity=0.192  Sum_probs=225.1

Q ss_pred             CEEeecccCcc-----------------cCCCCCC-CCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCC
Q 042476            1 ELNLSNNQIYG-----------------VIPYFDH-RPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSK   62 (433)
Q Consensus         1 ~L~ls~n~l~~-----------------~~~~~~~-~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~   62 (433)
                      +|||++|.|++                 .+|+... ..    +++|++|++++|.+.+.+|..+   .++++|+.|++++
T Consensus       452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~----L~~L~~L~Ls~N~l~~~iP~~l---~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN----LKDLTDVELYNCPNMTQLPDFL---YDLPELQSLNIAC  524 (876)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG----CTTCCEEEEESCTTCCSCCGGG---GGCSSCCEEECTT
T ss_pred             EEECcCCcCCCCcccccccccccccccccCChhhhhcc----CCCCCEEECcCCCCCccChHHH---hCCCCCCEEECcC
Confidence            48999999998                 2663211 12    6689999999999999999888   5599999999999


Q ss_pred             Cc-CcC-cCCcccC-------CCCCCCEEEccCCcCcccCCc--ccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           63 NY-FSG-DIPDCWM-------NWPHLQVLNLDDNYFTGNLPI--SIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        63 n~-l~~-~~~~~~~-------~l~~L~~L~L~~n~i~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      |+ +++ .+|..+.       .+++|++|++++|.+. .+|.  .|.++++|+.|++++|.+. .+| .+..+++|++|+
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~  601 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK  601 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence            98 887 6776554       4459999999999999 8888  8999999999999999998 777 899999999999


Q ss_pred             CcCccccccCChhhhhcCCC-ccEEEeeCccccccCCccccCCCC--cCEEEccCCcCcccCCCCc---c--cccccccc
Q 042476          132 IGENDFFGSIPTWVGERFPR-LLILNLRSNKFNGSLPVQLCHLTF--LRILDVAHNNLSGTIPRCI---N--NFTAMATI  203 (433)
Q Consensus       132 L~~n~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~~~~p~~~---~--~l~~L~~L  203 (433)
                      +++|.+. .+|..+. .+++ |++|++++|.+. .+|..+..++.  |+.|++++|.+.+.+|...   .  .+.+|+.|
T Consensus       602 Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L  678 (876)
T 4ecn_A          602 LDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV  678 (876)
T ss_dssp             CCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred             CcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence            9999995 8888876 6888 999999999998 77888777654  9999999999987665322   2  33478888


Q ss_pred             ccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC--------CccCceEeCcC
Q 042476          204 NSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN--------LEGLQTLNLSH  275 (433)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~--------l~~L~~L~Ls~  275 (433)
                      +++.+...                    ......+..+++|+.|++++|.++ .+|..+..        +++|+.|+|++
T Consensus       679 ~Ls~N~L~--------------------~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~  737 (876)
T 4ecn_A          679 TLSYNEIQ--------------------KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF  737 (876)
T ss_dssp             ECCSSCCC--------------------SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred             EccCCcCC--------------------ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC
Confidence            88877522                    111112233455666666666665 33332211        22566666666


Q ss_pred             cccccCCCcccC--CCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcC------CcCcccCCCC-cccCccCcccccC
Q 042476          276 NFFVGKIPENIG--NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSE------NDLSGQIPSS-TQLQSFGASCFSG  346 (433)
Q Consensus       276 n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~------n~l~~~~p~~-~~~~~l~~~~~~~  346 (433)
                      |+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++++      |++.+.+|.. ..++.++.+++++
T Consensus       738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~  815 (876)
T 4ecn_A          738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS  815 (876)
T ss_dssp             SCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred             CCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence            6665 5555554  56666666666666654 555556666666666654      5555555533 4455566666666


Q ss_pred             CcC
Q 042476          347 NDL  349 (433)
Q Consensus       347 n~l  349 (433)
                      |.+
T Consensus       816 N~L  818 (876)
T 4ecn_A          816 NDI  818 (876)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.2e-33  Score=282.22  Aligned_cols=332  Identities=21%  Similarity=0.188  Sum_probs=219.7

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      ++|+++|.+++ +|.-    +   .+++++|++++|.+++..+..+   .++++|++|++++|.+++..|+.|.++++|+
T Consensus        35 ~l~ls~~~L~~-ip~~----~---~~~L~~L~Ls~N~i~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  103 (562)
T 3a79_B           35 MVDYSNRNLTH-VPKD----L---PPRTKALSLSQNSISELRMPDI---SFLSELRVLRLSHNRIRSLDFHVFLFNQDLE  103 (562)
T ss_dssp             EEECTTSCCCS-CCTT----S---CTTCCEEECCSSCCCCCCGGGT---TTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             EEEcCCCCCcc-CCCC----C---CCCcCEEECCCCCccccChhhh---ccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence            37899999995 6631    1   3589999999999998877777   5699999999999999988899999999999


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCccccc-CCccccCCCCCcEEECcCccccccCChhhhhcCCCc--cEEEe
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGI-FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRL--LILNL  157 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L--~~L~L  157 (433)
                      +|++++|.++ .+|..  .+++|++|++++|.+.+. .|..++++++|++|++++|.+.+.   .+ ..+++|  ++|++
T Consensus       104 ~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~-~~l~~L~L~~L~L  176 (562)
T 3a79_B          104 YLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DL-LPVAHLHLSCILL  176 (562)
T ss_dssp             EEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TT-GGGTTSCEEEEEE
T ss_pred             EEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---ch-hhhhhceeeEEEe
Confidence            9999999999 56666  799999999999999864 467899999999999999988542   12 245555  99999


Q ss_pred             eCccc--cccCCccccCCC-------------------------------------------------------------
Q 042476          158 RSNKF--NGSLPVQLCHLT-------------------------------------------------------------  174 (433)
Q Consensus       158 ~~n~l--~~~~~~~l~~l~-------------------------------------------------------------  174 (433)
                      ++|.+  .+..|..+..+.                                                             
T Consensus       177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L  256 (562)
T 3a79_B          177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL  256 (562)
T ss_dssp             EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred             ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence            99988  555555544432                                                             


Q ss_pred             --------------------CcCEEEccCCcCcccCCCCc-----cccccccccccccccccccccc-----cCCceeee
Q 042476          175 --------------------FLRILDVAHNNLSGTIPRCI-----NNFTAMATINSSNQKNAIYYFV-----TRGNIVFE  224 (433)
Q Consensus       175 --------------------~L~~L~l~~n~~~~~~p~~~-----~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~~~  224 (433)
                                          +|++|++++|.+.+.+|..+     ..++.|+.+++..+...++...     .....  .
T Consensus       257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L--~  334 (562)
T 3a79_B          257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI--K  334 (562)
T ss_dssp             EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC--S
T ss_pred             cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc--e
Confidence                                45566666666665666555     4444444444333321111000     00000  0


Q ss_pred             cceeeeccceee-hhhhccceeEEEcccCcccccCCccccCCccCceEeCcCccccc--CCCcccCCCCCCCEEeCcCCc
Q 042476          225 DASVVTKGLLVE-YNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVG--KIPENIGNMRSIESLDFSTNR  301 (433)
Q Consensus       225 ~~~~~~~~~~~~-~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~  301 (433)
                      ............ ....+++|++|++++|.+++..|..+.++++|+.|++++|++++  .+|..+..+++|+.|++++|+
T Consensus       335 ~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             EEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence            000000000000 11446677777777777776677777777777777777777764  234556777777777777777


Q ss_pred             CCCCCCc-cccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCC
Q 042476          302 LFGRIPQ-SMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAP  353 (433)
Q Consensus       302 l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~  353 (433)
                      +++.+|. .+..+++|+.|++++|++++.+|.... +.++.+++++|.+...|
T Consensus       415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~~ip  466 (562)
T 3a79_B          415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIMSIP  466 (562)
T ss_dssp             CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCCCCC
T ss_pred             CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCcccC
Confidence            7663443 456666666666666666655443311 35555666666555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.7e-33  Score=281.55  Aligned_cols=314  Identities=19%  Similarity=0.193  Sum_probs=228.9

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +|||++|.+++..|+.. +.    +++|++|++++|++++..|..+   .++++|++|++++|.++ .+|..  .+++|+
T Consensus        56 ~L~Ls~N~i~~~~~~~~-~~----l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~  124 (562)
T 3a79_B           56 ALSLSQNSISELRMPDI-SF----LSELRVLRLSHNRIRSLDFHVF---LFNQDLEYLDVSHNRLQ-NISCC--PMASLR  124 (562)
T ss_dssp             EEECCSSCCCCCCGGGT-TT----CTTCCEEECCSCCCCEECTTTT---TTCTTCCEEECTTSCCC-EECSC--CCTTCS
T ss_pred             EEECCCCCccccChhhh-cc----CCCccEEECCCCCCCcCCHHHh---CCCCCCCEEECCCCcCC-ccCcc--ccccCC
Confidence            48999999997766322 22    6689999999999998888877   55899999999999998 45655  799999


Q ss_pred             EEEccCCcCccc-CCcccCCCCCcCEEEccCCcccccCCccccCCCCC--cEEECcCccc--cccCChhhhh--------
Q 042476           81 VLNLDDNYFTGN-LPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSL--ISLDIGENDF--FGSIPTWVGE--------  147 (433)
Q Consensus        81 ~L~L~~n~i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~~--~~~~~~~~~~--------  147 (433)
                      +|++++|.+.+. .|..|+++++|++|++++|.+...   .+..+++|  ++|++++|.+  .+..|..+..        
T Consensus       125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l  201 (562)
T 3a79_B          125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL  201 (562)
T ss_dssp             EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred             EEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence            999999999863 468899999999999999998753   34444555  8888877766  3333222210        


Q ss_pred             ------------------------------------------------------------------------cCCCccEE
Q 042476          148 ------------------------------------------------------------------------RFPRLLIL  155 (433)
Q Consensus       148 ------------------------------------------------------------------------~l~~L~~L  155 (433)
                                                                                              ..++|++|
T Consensus       202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L  281 (562)
T 3a79_B          202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL  281 (562)
T ss_dssp             EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred             EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence                                                                                    11267777


Q ss_pred             EeeCccccccCCccc-----------------------------------------------------cCCCCcCEEEcc
Q 042476          156 NLRSNKFNGSLPVQL-----------------------------------------------------CHLTFLRILDVA  182 (433)
Q Consensus       156 ~L~~n~l~~~~~~~l-----------------------------------------------------~~l~~L~~L~l~  182 (433)
                      ++++|.+.+.+|..+                                                     ..+++|++|+++
T Consensus       282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~  361 (562)
T 3a79_B          282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT  361 (562)
T ss_dssp             EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred             EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECC
Confidence            777777776666544                                                     566777778888


Q ss_pred             CCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCc-c
Q 042476          183 HNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPM-Q  261 (433)
Q Consensus       183 ~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~  261 (433)
                      +|.+++..|..+..+++|+.|+++.+....                  ....+..+..+++|+.|++++|.+++.+|. .
T Consensus       362 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  423 (562)
T 3a79_B          362 QNVFTDSVFQGCSTLKRLQTLILQRNGLKN------------------FFKVALMTKNMSSLETLDVSLNSLNSHAYDRT  423 (562)
T ss_dssp             SSCCCTTTTTTCCSCSSCCEEECCSSCCCB------------------TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred             CCccccchhhhhcccCCCCEEECCCCCcCC------------------cccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence            877777677777777777777777654110                  001122345577888888888888874443 4


Q ss_pred             ccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC-CcccCccC
Q 042476          262 LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS-STQLQSFG  340 (433)
Q Consensus       262 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~~l~  340 (433)
                      +..+++|+.|++++|++++.+|..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+. ...++.++
T Consensus       424 ~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  500 (562)
T 3a79_B          424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ  500 (562)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCC
T ss_pred             hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCC
Confidence            77788888888888888776666554  68888888888886 5666666888888888888888853333 45677788


Q ss_pred             cccccCCcC
Q 042476          341 ASCFSGNDL  349 (433)
Q Consensus       341 ~~~~~~n~l  349 (433)
                      .+++++|++
T Consensus       501 ~L~l~~N~~  509 (562)
T 3a79_B          501 YIWLHDNPW  509 (562)
T ss_dssp             CEECCSCCB
T ss_pred             EEEecCCCc
Confidence            888888865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.3e-34  Score=298.28  Aligned_cols=290  Identities=18%  Similarity=0.186  Sum_probs=223.0

Q ss_pred             CCCCCccEEEcCCCcCcC-----------------cCCcccC--CCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccC
Q 042476           50 DNKSVIISLKLSKNYFSG-----------------DIPDCWM--NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRN  110 (433)
Q Consensus        50 ~~~~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~  110 (433)
                      .++++|+.|+|++|.+++                 .+|..+.  ++++|++|+|++|.+.+.+|..|.++++|++|++++
T Consensus       445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred             hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence            568899999999999987                 3888877  999999999999999889999999999999999999


Q ss_pred             Cc-ccc-cCCccccCC-------CCCcEEECcCccccccCCh--hhhhcCCCccEEEeeCccccccCCccccCCCCcCEE
Q 042476          111 NR-LAG-IFPVSLKNC-------SSLISLDIGENDFFGSIPT--WVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL  179 (433)
Q Consensus       111 n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  179 (433)
                      |. +++ .+|..+..+       ++|++|++++|.+. .+|.  .+. .+++|++|++++|.+. .+| .+..+++|+.|
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L  600 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL  600 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence            98 887 677766554       49999999999986 8887  555 7999999999999998 777 88999999999


Q ss_pred             EccCCcCcccCCCCcccccc-cccccccccccc-ccccccCCc---eeeecceee-eccceee---hhh--hccceeEEE
Q 042476          180 DVAHNNLSGTIPRCINNFTA-MATINSSNQKNA-IYYFVTRGN---IVFEDASVV-TKGLLVE---YNS--ILNLVRSID  248 (433)
Q Consensus       180 ~l~~n~~~~~~p~~~~~l~~-L~~L~l~~~~~~-~~~~~~~~~---~~~~~~~~~-~~~~~~~---~~~--~~~~L~~L~  248 (433)
                      ++++|.+. .+|..+..+++ |+.|+++.+... ++..+....   .....+... ..+..+.   ...  ..++|+.|+
T Consensus       601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~  679 (876)
T 4ecn_A          601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT  679 (876)
T ss_dssp             ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred             ECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence            99999998 88888999988 999998887633 111111100   111111110 0111111   111  234799999


Q ss_pred             cccCcccccCCcc-ccCCccCceEeCcCcccccCCCcccCC--------CCCCCEEeCcCCcCCCCCCcccc--CCCCCC
Q 042476          249 ISKNNFSGEIPMQ-LTNLEGLQTLNLSHNFFVGKIPENIGN--------MRSIESLDFSTNRLFGRIPQSMS--SLSFLN  317 (433)
Q Consensus       249 L~~n~~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~--------l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~  317 (433)
                      +++|.++ .+|.. +..+++|+.|+|++|+++ .+|..+..        +++|+.|+|++|+++ .+|..+.  .+++|+
T Consensus       680 Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~  756 (876)
T 4ecn_A          680 LSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLS  756 (876)
T ss_dssp             CCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCC
T ss_pred             ccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcC
Confidence            9999998 45544 457899999999999998 66654433        238999999999998 7788776  899999


Q ss_pred             eeeCcCCcCcccCCCCcccCccCcccccCC
Q 042476          318 HLNLSENDLSGQIPSSTQLQSFGASCFSGN  347 (433)
Q Consensus       318 ~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n  347 (433)
                      .|++++|++++.++....++.++.+++++|
T Consensus       757 ~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N  786 (876)
T 4ecn_A          757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ  786 (876)
T ss_dssp             EEECCSSCCSSCCCGGGGCTTCCEEECCCC
T ss_pred             EEEeCCCCCCccchhhhcCCCCCEEECCCC
Confidence            999999999984444577888999988764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.8e-33  Score=284.26  Aligned_cols=158  Identities=22%  Similarity=0.217  Sum_probs=135.5

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCE
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV   81 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (433)
                      +|.+++.++ .+|.-    +   .+++++|++++|.+++..+..+   .++++|++|++++|.+++..|.+|.++++|++
T Consensus        16 ~~c~~~~l~-~ip~~----~---~~~l~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~   84 (606)
T 3vq2_A           16 YQCMDQKLS-KVPDD----I---PSSTKNIDLSFNPLKILKSYSF---SNFSELQWLDLSRCEIETIEDKAWHGLHHLSN   84 (606)
T ss_dssp             EECTTSCCS-SCCTT----S---CTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             eEccCCCcc-cCCCC----C---CCCcCEEECCCCCcCEeChhhc---cCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence            455666666 33421    1   4689999999999998888777   56999999999999999888999999999999


Q ss_pred             EEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccc-cCChhhhhcCCCccEEEeeCc
Q 042476           82 LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFG-SIPTWVGERFPRLLILNLRSN  160 (433)
Q Consensus        82 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n  160 (433)
                      |++++|.+.+..|.+|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..+. ++++|++|++++|
T Consensus        85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYN  163 (606)
T ss_dssp             EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSS
T ss_pred             eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHh-hcCCCCEEEccCC
Confidence            9999999998889999999999999999999998887889999999999999999854 5677776 8999999999999


Q ss_pred             cccccCCcccc
Q 042476          161 KFNGSLPVQLC  171 (433)
Q Consensus       161 ~l~~~~~~~l~  171 (433)
                      .+.+..+..+.
T Consensus       164 ~l~~~~~~~~~  174 (606)
T 3vq2_A          164 YIQTITVNDLQ  174 (606)
T ss_dssp             CCCEECTTTTH
T ss_pred             cceecChhhhh
Confidence            88765554443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.4e-32  Score=279.97  Aligned_cols=347  Identities=19%  Similarity=0.145  Sum_probs=268.6

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +|++++|.+++..|....+ ++  .++|++|++++|.+++..+..+   ..+++|++|++++|.+.+..|..|.++++|+
T Consensus       226 ~L~L~~n~l~~~~~~~~~~-l~--~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  299 (680)
T 1ziw_A          226 NLSLSNSQLSTTSNTTFLG-LK--WTNLTMLDLSYNNLNVVGNDSF---AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR  299 (680)
T ss_dssp             EEECTTSCCCEECTTTTGG-GG--GSCCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred             EEEccCCcccccChhHhhc-cC--cCCCCEEECCCCCcCccCcccc---cCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence            3788889888877753321 11  2459999999999998887777   5589999999999999999999999999999


Q ss_pred             EEEccCCcCcc-----cCCc----ccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCcccc-ccCChhhhhc--
Q 042476           81 VLNLDDNYFTG-----NLPI----SIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFF-GSIPTWVGER--  148 (433)
Q Consensus        81 ~L~L~~n~i~~-----~~p~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~--  148 (433)
                      +|++++|...+     .+|.    .|..+++|++|++++|.+.+..+..|..+++|++|++++|.+. ..++...+..  
T Consensus       300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~  379 (680)
T 1ziw_A          300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA  379 (680)
T ss_dssp             EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred             EEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc
Confidence            99999876543     2333    7889999999999999999988888999999999999998752 2334333322  


Q ss_pred             CCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCC-CCccccccccccccccccccccc--ccc----CCce
Q 042476          149 FPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIP-RCINNFTAMATINSSNQKNAIYY--FVT----RGNI  221 (433)
Q Consensus       149 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~--~~~----~~~~  221 (433)
                      .++|+.|++++|++.+..+.++..+++|+.|++++|.+.+.+| ..+..+++|+.++++.+......  .+.    ....
T Consensus       380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L  459 (680)
T 1ziw_A          380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL  459 (680)
T ss_dssp             TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred             cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence            3689999999999998889999999999999999999987666 67889999999999887622110  000    0000


Q ss_pred             eeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCC--------cccCCCCCCC
Q 042476          222 VFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIP--------ENIGNMRSIE  293 (433)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~l~~l~~L~  293 (433)
                      ..........+..+..+..+++|+.|++++|.+++..+..+.++++|+.|++++|++++..+        ..+..+++|+
T Consensus       460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~  539 (680)
T 1ziw_A          460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH  539 (680)
T ss_dssp             ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred             hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence            00000000113345566778899999999999998777888999999999999999875422        2378889999


Q ss_pred             EEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-cccCccCcccccCCcCCCCC
Q 042476          294 SLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDLCGAP  353 (433)
Q Consensus       294 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~  353 (433)
                      .|++++|+++...+..|..+++|+.|++++|++++..+.. ..++.++.+++++|.+.+.+
T Consensus       540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            9999999998655567899999999999999999655543 46788899999998776543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.5e-33  Score=278.78  Aligned_cols=336  Identities=20%  Similarity=0.180  Sum_probs=210.5

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +|||++|.+++..|.... .    +++|++|++++|++++..+..+   .++++|++|++++|.+++..+..|.++++|+
T Consensus        30 ~L~Ls~n~l~~~~~~~~~-~----l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  101 (549)
T 2z81_A           30 SLDLSFNKITYIGHGDLR-A----CANLQVLILKSSRINTIEGDAF---YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK  101 (549)
T ss_dssp             EEECCSSCCCEECSSTTS-S----CTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred             EEECcCCccCccChhhhh-c----CCcccEEECCCCCcCccChhhc---cccccCCEEECCCCccCccCHHHhccCCCCc
Confidence            478999999877664222 2    5578888888888877766666   4477888888888887766666677778888


Q ss_pred             EEEccCCcCcc-cCCcccCCCCCcCEEEccCCc-ccccCCccccCCCCCcEEECcCccccccCChhh-------------
Q 042476           81 VLNLDDNYFTG-NLPISIGTLSSLRSLHLRNNR-LAGIFPVSLKNCSSLISLDIGENDFFGSIPTWV-------------  145 (433)
Q Consensus        81 ~L~L~~n~i~~-~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-------------  145 (433)
                      +|++++|.+.+ ..|..+.++++|++|++++|. +....+..+..+++|++|++++|.+.+..|..+             
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  181 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL  181 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence            88888877774 245667777777777777776 333333556667777777777666654444333             


Q ss_pred             ----------hhcCCCccEEEeeCccccccC--Ccc-ccC----------------------------------------
Q 042476          146 ----------GERFPRLLILNLRSNKFNGSL--PVQ-LCH----------------------------------------  172 (433)
Q Consensus       146 ----------~~~l~~L~~L~L~~n~l~~~~--~~~-l~~----------------------------------------  172 (433)
                                ...+++|++|++++|.+.+..  +.. ...                                        
T Consensus       182 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             SBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             CcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence                      234667777777777766421  000 000                                        


Q ss_pred             -----------------------------------------------CCCcCEEEccCCcCcccCCCCc-cccccccccc
Q 042476          173 -----------------------------------------------LTFLRILDVAHNNLSGTIPRCI-NNFTAMATIN  204 (433)
Q Consensus       173 -----------------------------------------------l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~  204 (433)
                                                                     .++|+.|++++|.+. .+|..+ ..+++|+.|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~  340 (549)
T 2z81_A          262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLD  340 (549)
T ss_dssp             EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEE
T ss_pred             cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEE
Confidence                                                           123444444444443 344433 4577888888


Q ss_pred             cccccccccc-----ccc-CCceeeecceee-eccc--eeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcC
Q 042476          205 SSNQKNAIYY-----FVT-RGNIVFEDASVV-TKGL--LVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSH  275 (433)
Q Consensus       205 l~~~~~~~~~-----~~~-~~~~~~~~~~~~-~~~~--~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~  275 (433)
                      ++.+......     ... ........+... ....  ....+..+++|++|++++|.++ .+|..+..+++|++|++++
T Consensus       341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~  419 (549)
T 2z81_A          341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS  419 (549)
T ss_dssp             CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTT
T ss_pred             ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCC
Confidence            8877533210     000 000111011000 0110  0123556788888888888887 5677778888888888888


Q ss_pred             cccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCCC
Q 042476          276 NFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPL  354 (433)
Q Consensus       276 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~  354 (433)
                      |+++ .+|..+  .++|+.|++++|++++.+    ..+++|+.|++++|+++ .+|....++.++.+++++|.+.+.+.
T Consensus       420 N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~  490 (549)
T 2z81_A          420 TGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPD  490 (549)
T ss_dssp             SCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCT
T ss_pred             CCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCH
Confidence            8876 344333  256777777777776532    46778888888888887 56666677778888888887776554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.7e-33  Score=280.98  Aligned_cols=172  Identities=20%  Similarity=0.170  Sum_probs=142.8

Q ss_pred             EeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEE
Q 042476            3 NLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVL   82 (433)
Q Consensus         3 ~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (433)
                      |.++|.++ .+|..    +   .++|++|++++|++++..+..+   .++++|++|++++|++++..|+.|.++++|++|
T Consensus        11 ~~~~~~l~-~ip~~----~---~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   79 (549)
T 2z81_A           11 DGRSRSFT-SIPSG----L---TAAMKSLDLSFNKITYIGHGDL---RACANLQVLILKSSRINTIEGDAFYSLGSLEHL   79 (549)
T ss_dssp             ECTTSCCS-SCCSC----C---CTTCCEEECCSSCCCEECSSTT---SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ECCCCccc-ccccc----C---CCCccEEECcCCccCccChhhh---hcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence            55666666 44531    1   3589999999999998888777   569999999999999998888999999999999


Q ss_pred             EccCCcCcccCCcccCCCCCcCEEEccCCccccc-CCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc
Q 042476           83 NLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGI-FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK  161 (433)
Q Consensus        83 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  161 (433)
                      ++++|++.+..|..|+++++|++|++++|.+.+. .|..++++++|++|++++|...+.+|...+..+++|++|++++|.
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            9999999977777799999999999999999863 567899999999999999985577776555589999999999999


Q ss_pred             ccccCCccccCCCCcCEEEccCCc
Q 042476          162 FNGSLPVQLCHLTFLRILDVAHNN  185 (433)
Q Consensus       162 l~~~~~~~l~~l~~L~~L~l~~n~  185 (433)
                      +.+..|..+..+++|++|+++.|.
T Consensus       160 l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          160 LRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ccccChhhhhccccCceEecccCc
Confidence            998788777665544444444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.5e-32  Score=272.69  Aligned_cols=159  Identities=24%  Similarity=0.221  Sum_probs=135.0

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      ++++++|++++|.+++..+..+   .++++|++|++++|.+++..+..|.++++|++|++++|.++...|.+|.++++|+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSF---FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  103 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTT---TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             cccccEEEccCCccCccChhHh---hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence            4589999999999998887777   5699999999999999988889999999999999999999987888999999999


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccc-cCChhhhhcCCCccEEEeeCccccccCCccccCCCCc----CEE
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFG-SIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL----RIL  179 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L  179 (433)
                      +|++++|.+.+..+..++.+++|++|++++|.+.+ .+|..+. ++++|++|++++|.+.+..+..+..+++|    +.|
T Consensus       104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L  182 (570)
T 2z63_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (570)
T ss_dssp             EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred             cccccccccccCCCccccccccccEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence            99999999997766679999999999999999855 4677776 79999999999998876555555544444    455


Q ss_pred             EccCCcCc
Q 042476          180 DVAHNNLS  187 (433)
Q Consensus       180 ~l~~n~~~  187 (433)
                      ++++|.+.
T Consensus       183 ~l~~n~l~  190 (570)
T 2z63_A          183 DLSLNPMN  190 (570)
T ss_dssp             ECTTCCCC
T ss_pred             ccCCCCce
Confidence            55555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.3e-31  Score=273.35  Aligned_cols=341  Identities=21%  Similarity=0.186  Sum_probs=221.8

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +||||+|.|++..|+.. +.    +++|++|+|++|++++..+.+|   .++++|++|+|++|++++..+..|.++++|+
T Consensus        56 ~LdLs~N~i~~l~~~~f-~~----l~~L~~L~Ls~N~i~~i~~~~f---~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           56 NLDLSFNPLRHLGSYSF-FS----FPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  127 (635)
T ss_dssp             EEECTTSCCCEECTTTT-TT----CTTCCEEECTTCCCCEECTTTT---TTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred             EEEeeCCCCCCCCHHHH-hC----CCCCCEEECCCCcCCCcChhHh---cCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence            47888888886655322 22    5678888888888887777666   5588888888888888876667788888888


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCccccc-CCccccCCCCCcEEECcCccccccCChhhh-------------
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGI-FPVSLKNCSSLISLDIGENDFFGSIPTWVG-------------  146 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-------------  146 (433)
                      +|++++|++++..+..|+++++|++|++++|.+.+. .|..+..+++|++|++++|.+.+..+..+.             
T Consensus       128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~  207 (635)
T 4g8a_A          128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD  207 (635)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred             EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence            888888888866666788888888888888887653 566777888888888888766332211110             


Q ss_pred             --------------------------------------h-----------------------------------------
Q 042476          147 --------------------------------------E-----------------------------------------  147 (433)
Q Consensus       147 --------------------------------------~-----------------------------------------  147 (433)
                                                            .                                         
T Consensus       208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~  287 (635)
T 4g8a_A          208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  287 (635)
T ss_dssp             CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred             cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence                                                  0                                         


Q ss_pred             --------------------------------------cCCCccEEEeeCccccccCC-------------------ccc
Q 042476          148 --------------------------------------RFPRLLILNLRSNKFNGSLP-------------------VQL  170 (433)
Q Consensus       148 --------------------------------------~l~~L~~L~L~~n~l~~~~~-------------------~~l  170 (433)
                                                            ...+++.|++.+|.+....+                   ...
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  367 (635)
T 4g8a_A          288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE  367 (635)
T ss_dssp             EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred             hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence                                                  00122333333332221110                   011


Q ss_pred             cCCCCcCEEEccCCcCcc--cCCCCccccccccccccccccccccccc---------------------------cCCce
Q 042476          171 CHLTFLRILDVAHNNLSG--TIPRCINNFTAMATINSSNQKNAIYYFV---------------------------TRGNI  221 (433)
Q Consensus       171 ~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~~~~---------------------------~~~~~  221 (433)
                      ..+++|+.++++.|.+..  ..+..+..+.+|+.+++..+........                           .....
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            235677888888877642  2333333444555554444321110000                           00000


Q ss_pred             eeecce-eeeccceeehhhhccceeEEEcccCcc-cccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcC
Q 042476          222 VFEDAS-VVTKGLLVEYNSILNLVRSIDISKNNF-SGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFST  299 (433)
Q Consensus       222 ~~~~~~-~~~~~~~~~~~~~~~~L~~L~L~~n~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  299 (433)
                      ...... ..........+..++.++.|++++|.+ .+..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            000000 001122233445567788889988875 445677888889999999999999888888888999999999999


Q ss_pred             CcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-ccc-CccCcccccCCcC
Q 042476          300 NRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQL-QSFGASCFSGNDL  349 (433)
Q Consensus       300 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~-~~l~~~~~~~n~l  349 (433)
                      |++++..|..+..+++|+.|++++|++++.+|.. ..+ +.++.+++++|++
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence            9998888888888999999999999999877764 233 4678888888865

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.7e-32  Score=260.93  Aligned_cols=309  Identities=17%  Similarity=0.130  Sum_probs=173.8

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      ++++++|+++++.++...+..+   ..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHH---HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCceEEEecCCchhhCChhHh---cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            3456666666666554333333   2255666666666666555555566666666666666666655555556666666


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN  184 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  184 (433)
                      +|++++|.+....+..|..+++|++|++++|.+. .++...+..+++|++|++++|.+++.   .+..+++|+.|++++|
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN  196 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence            6666666665444344455666666666666553 23332223556666666666655532   2334455555555555


Q ss_pred             cCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476          185 NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN  264 (433)
Q Consensus       185 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  264 (433)
                      .+.+     +....+|+.|+++.+.................+....-. ....+..+++|++|++++|.+++..|..+..
T Consensus       197 ~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          197 LLST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             CCSE-----EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             cccc-----cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCc-ccHHHcCCCCccEEECCCCcCCCcChhHccc
Confidence            4442     111223444443333211000000000000000000000 0123455777888888888888777777888


Q ss_pred             CccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccc
Q 042476          265 LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCF  344 (433)
Q Consensus       265 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~  344 (433)
                      +++|+.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++.. + ...++.++.+++
T Consensus       271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l  346 (390)
T 3o6n_A          271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTL  346 (390)
T ss_dssp             CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEEC
T ss_pred             cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEc
Confidence            8888888888888874 4555667788888888888876 4566667778888888888888754 3 345677777888


Q ss_pred             cCCcCC
Q 042476          345 SGNDLC  350 (433)
Q Consensus       345 ~~n~l~  350 (433)
                      ++|++.
T Consensus       347 ~~N~~~  352 (390)
T 3o6n_A          347 SHNDWD  352 (390)
T ss_dssp             CSSCEE
T ss_pred             CCCCcc
Confidence            887663

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.3e-31  Score=252.95  Aligned_cols=298  Identities=20%  Similarity=0.265  Sum_probs=219.4

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCE
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV   81 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (433)
                      |++++|.++. +|.+..      +++|++|++++|.+++..+  +   ..+++|++|++++|.++..  ..+.++++|++
T Consensus        49 L~l~~~~i~~-~~~~~~------~~~L~~L~l~~n~i~~~~~--~---~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~  114 (347)
T 4fmz_A           49 LVVAGEKVAS-IQGIEY------LTNLEYLNLNGNQITDISP--L---SNLVKLTNLYIGTNKITDI--SALQNLTNLRE  114 (347)
T ss_dssp             EECCSSCCCC-CTTGGG------CTTCCEEECCSSCCCCCGG--G---TTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             EEEeCCcccc-chhhhh------cCCccEEEccCCccccchh--h---hcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence            6777777763 233211      5678888888888775433  4   4578888888888877753  35778888888


Q ss_pred             EEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc
Q 042476           82 LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK  161 (433)
Q Consensus        82 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  161 (433)
                      |++++|.+.. .+. +..+++|++|++++|......+ .+..+++|++|++++|.+. .++.  +..+++|++|++++|.
T Consensus       115 L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          115 LYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSC
T ss_pred             EECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCc
Confidence            8888888774 333 7778888888888886554433 4778888888888888773 3333  3367888888888888


Q ss_pred             ccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhc
Q 042476          162 FNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSIL  241 (433)
Q Consensus       162 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (433)
                      +... +. +..+++|+.|++++|.+.+..+  +..+++|+.|+++.+...                     ... ....+
T Consensus       189 l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~---------------------~~~-~~~~l  242 (347)
T 4fmz_A          189 IEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT---------------------DLS-PLANL  242 (347)
T ss_dssp             CCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC---------------------CCG-GGTTC
T ss_pred             cccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC---------------------CCc-chhcC
Confidence            7743 22 7778888888888888764333  677788888887776411                     011 14567


Q ss_pred             cceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC
Q 042476          242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL  321 (433)
Q Consensus       242 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  321 (433)
                      ++|++|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus       243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL  318 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred             CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence            8899999999998753  4678889999999999998854  45788899999999999998888888999999999999


Q ss_pred             cCCcCcccCCCCcccCccCcccccCCcCC
Q 042476          322 SENDLSGQIPSSTQLQSFGASCFSGNDLC  350 (433)
Q Consensus       322 ~~n~l~~~~p~~~~~~~l~~~~~~~n~l~  350 (433)
                      ++|++++..| ...++.++.+++++|.+.
T Consensus       319 ~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          319 SQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             cCCccccccC-hhhhhccceeehhhhccc
Confidence            9999997666 677888999999988764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=273.76  Aligned_cols=315  Identities=21%  Similarity=0.209  Sum_probs=234.5

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +|||++|.+++..|+.. +.    +++|++|++++|++++..|..+   .++++|++|++++|+++ .+|..  .+++|+
T Consensus        25 ~L~Ls~n~i~~~~~~~~-~~----l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~   93 (520)
T 2z7x_B           25 ILNISQNYISELWTSDI-LS----LSKLRILIISHNRIQYLDISVF---KFNQELEYLDLSHNKLV-KISCH--PTVNLK   93 (520)
T ss_dssp             EEECCSSCCCCCCHHHH-TT----CTTCCEEECCSSCCCEEEGGGG---TTCTTCCEEECCSSCCC-EEECC--CCCCCS
T ss_pred             EEECCCCcccccChhhc-cc----cccccEEecCCCccCCcChHHh---hcccCCCEEecCCCcee-ecCcc--ccCCcc
Confidence            48999999987765321 22    5689999999999988878777   55889999999999888 45554  788899


Q ss_pred             EEEccCCcCcc-cCCcccCCCCCcCEEEccCCcccccCCccccCCCCC--cEEECcCccc--cccCChhhhh--------
Q 042476           81 VLNLDDNYFTG-NLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSL--ISLDIGENDF--FGSIPTWVGE--------  147 (433)
Q Consensus        81 ~L~L~~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~~--~~~~~~~~~~--------  147 (433)
                      +|++++|.+.+ ..|..|+++++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .+..|..+..        
T Consensus        94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l  170 (520)
T 2z7x_B           94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI  170 (520)
T ss_dssp             EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred             EEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence            99999998886 467888888888888888887764   234444444  5555555444  2222221110        


Q ss_pred             --------------------------------------------------------------------------cCCCcc
Q 042476          148 --------------------------------------------------------------------------RFPRLL  153 (433)
Q Consensus       148 --------------------------------------------------------------------------~l~~L~  153 (433)
                                                                                                ..++|+
T Consensus       171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence                                                                                      012455


Q ss_pred             EEEeeCccccccCCccc-----------------------------------------------------cCCCCcCEEE
Q 042476          154 ILNLRSNKFNGSLPVQL-----------------------------------------------------CHLTFLRILD  180 (433)
Q Consensus       154 ~L~L~~n~l~~~~~~~l-----------------------------------------------------~~l~~L~~L~  180 (433)
                      +|++++|.+.+.+|..+                                                     ..+++|++|+
T Consensus       251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  330 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD  330 (520)
T ss_dssp             EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred             EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence            55555555544333332                                                     6788999999


Q ss_pred             ccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCc
Q 042476          181 VAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPM  260 (433)
Q Consensus       181 l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~  260 (433)
                      +++|.+++..|..+..+++|+.|+++.+....                  ....+..+..+++|++|++++|.+++.+|.
T Consensus       331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~  392 (520)
T 2z7x_B          331 FSNNLLTDTVFENCGHLTELETLILQMNQLKE------------------LSKIAEMTTQMKSLQQLDISQNSVSYDEKK  392 (520)
T ss_dssp             CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB------------------HHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred             eECCccChhhhhhhccCCCCCEEEccCCccCc------------------cccchHHHhhCCCCCEEECCCCcCCccccc
Confidence            99999998899999999999999999876210                  001223456688999999999999975554


Q ss_pred             -cccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC-CcccCc
Q 042476          261 -QLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS-STQLQS  338 (433)
Q Consensus       261 -~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~~  338 (433)
                       .+..+++|+.|++++|++++.+|..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+. ...++.
T Consensus       393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  469 (520)
T 2z7x_B          393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS  469 (520)
T ss_dssp             CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence             488899999999999999888887664  79999999999998 7888777999999999999999954333 456788


Q ss_pred             cCcccccCCcCC
Q 042476          339 FGASCFSGNDLC  350 (433)
Q Consensus       339 l~~~~~~~n~l~  350 (433)
                      ++.+++++|++.
T Consensus       470 L~~L~l~~N~~~  481 (520)
T 2z7x_B          470 LQKIWLHTNPWD  481 (520)
T ss_dssp             CCEEECCSSCBC
T ss_pred             ccEEECcCCCCc
Confidence            999999999773

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=7.2e-32  Score=272.80  Aligned_cols=292  Identities=17%  Similarity=0.145  Sum_probs=178.4

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +++++.|++++|.+++..+..+   ..+++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..|..|+++++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHH---HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCceEEEeeCCCCCCcCHHHH---ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            3445555555555544333333   2245555555555555554455555555555555555555544444555555555


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN  184 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  184 (433)
                      +|++++|.+.+..+..|..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+.   .+..+++|+.|++++|
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN  202 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-TCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh-cCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence            555555555544444445555555555555555332222222 455555555555555432   1233444444444444


Q ss_pred             cCcc------------------cCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeE
Q 042476          185 NLSG------------------TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRS  246 (433)
Q Consensus       185 ~~~~------------------~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  246 (433)
                      .+.+                  .++..+  .++|+.|+++.+..                    ..  ...+..+++|+.
T Consensus       203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l--------------------~~--~~~l~~l~~L~~  258 (597)
T 3oja_B          203 LLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNL--------------------TD--TAWLLNYPGLVE  258 (597)
T ss_dssp             CCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCC--------------------CC--CGGGGGCTTCSE
T ss_pred             ccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCC--------------------CC--ChhhccCCCCCE
Confidence            4432                  111111  13444444444331                    01  234566888999


Q ss_pred             EEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcC
Q 042476          247 IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDL  326 (433)
Q Consensus       247 L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  326 (433)
                      |++++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus       259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred             EECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence            9999999998888899999999999999999985 5666778899999999999997 6777788889999999999999


Q ss_pred             cccCCCCcccCccCcccccCCcCCC
Q 042476          327 SGQIPSSTQLQSFGASCFSGNDLCG  351 (433)
Q Consensus       327 ~~~~p~~~~~~~l~~~~~~~n~l~~  351 (433)
                      ++..  ...++.+..+++++|++.+
T Consensus       337 ~~~~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          337 VTLK--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CCCC--CCTTCCCSEEECCSSCEEH
T ss_pred             CCcC--hhhcCCCCEEEeeCCCCCC
Confidence            8653  3467788889999987643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=1.7e-31  Score=256.25  Aligned_cols=293  Identities=18%  Similarity=0.175  Sum_probs=237.6

Q ss_pred             CCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEE
Q 042476           51 NKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISL  130 (433)
Q Consensus        51 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  130 (433)
                      .+++++.|+++++.++...+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+.+..|..+..+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            47899999999999987666668899999999999999998777899999999999999999998888889999999999


Q ss_pred             ECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccc
Q 042476          131 DIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKN  210 (433)
Q Consensus       131 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~  210 (433)
                      ++++|.+ ..+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|+.++++.+..
T Consensus       123 ~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          123 VLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             ECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            9999999 578888766899999999999999987788899999999999999999843   366788888888887653


Q ss_pred             cccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCC
Q 042476          211 AIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMR  290 (433)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  290 (433)
                      .......  ......+........  ....+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..++
T Consensus       199 ~~~~~~~--~L~~L~l~~n~l~~~--~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (390)
T 3o6n_A          199 STLAIPI--AVEELDASHNSINVV--RGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  272 (390)
T ss_dssp             SEEECCS--SCSEEECCSSCCCEE--ECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             cccCCCC--cceEEECCCCeeeec--cccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence            2111100  000000000000001  112346799999999999854  5678899999999999999988899999999


Q ss_pred             CCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCCC
Q 042476          291 SIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPL  354 (433)
Q Consensus       291 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~  354 (433)
                      +|+.|++++|++++ +|..+..+++|+.|++++|++++..+....++.++.+++++|.+...+.
T Consensus       273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~  335 (390)
T 3o6n_A          273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL  335 (390)
T ss_dssp             SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred             cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCc
Confidence            99999999999975 5666678899999999999999655555678889999999998876654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.98  E-value=4.9e-31  Score=258.98  Aligned_cols=322  Identities=21%  Similarity=0.265  Sum_probs=202.1

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCE
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV   81 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (433)
                      |++++|.++. +|++..      +++|++|++++|.+++..+  +   .++++|++|++++|.+.+..+  +.++++|++
T Consensus        51 L~l~~~~i~~-l~~~~~------l~~L~~L~Ls~n~l~~~~~--~---~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           51 LQADRLGIKS-IDGVEY------LNNLTQINFSNNQLTDITP--L---KNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             EECCSSCCCC-CTTGGG------CTTCCEEECCSSCCCCCGG--G---TTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             EecCCCCCcc-Ccchhh------hcCCCEEECCCCccCCchh--h---hccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            5666666653 333211      4567777777776665433  3   346666666666666664433  666666666


Q ss_pred             EEccCCcCcccCCcccCCCCCcCEEEccCCcccccC-------------------CccccCCCCCcEEECcCccccccCC
Q 042476           82 LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIF-------------------PVSLKNCSSLISLDIGENDFFGSIP  142 (433)
Q Consensus        82 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~-------------------~~~~~~l~~L~~L~L~~n~~~~~~~  142 (433)
                      |++++|.+.+. +. +.++++|++|++++|.+.+..                   ...+..+++|++|++++|.+. .++
T Consensus       117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~  193 (466)
T 1o6v_A          117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DIS  193 (466)
T ss_dssp             EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCG
T ss_pred             EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CCh
Confidence            66666666643 22 566666666666666654321                   012566777888888888773 333


Q ss_pred             hhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccccccc-CCce
Q 042476          143 TWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVT-RGNI  221 (433)
Q Consensus       143 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~  221 (433)
                       .+ ..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ + ..+..+++|+.|+++.+.......+. ....
T Consensus       194 -~l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L  267 (466)
T 1o6v_A          194 -VL-AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKL  267 (466)
T ss_dssp             -GG-GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             -hh-ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchhhhcCCCC
Confidence             23 367888888888887775433  5667777777777777763 2 34666777777777765422111000 0000


Q ss_pred             eeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCc
Q 042476          222 VFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNR  301 (433)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  301 (433)
                      ....+....-.... ....+++|+.|++++|.+++..+  +..+++|+.|++++|++++..|  +..+++|+.|++++|.
T Consensus       268 ~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~  342 (466)
T 1o6v_A          268 TELKLGANQISNIS-PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK  342 (466)
T ss_dssp             SEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSC
T ss_pred             CEEECCCCccCccc-cccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCc
Confidence            00000000000111 14557778888888888875443  6778888888888888876655  6678888888888888


Q ss_pred             CCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCCC
Q 042476          302 LFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPL  354 (433)
Q Consensus       302 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~  354 (433)
                      +++.  ..+..+++|+.|++++|++++..| ...++.++.+++++|.+.+.|.
T Consensus       343 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~  392 (466)
T 1o6v_A          343 VSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPV  392 (466)
T ss_dssp             CCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCB
T ss_pred             cCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCch
Confidence            8754  457788888888888888887766 6677788888888888877654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=2.3e-30  Score=242.71  Aligned_cols=287  Identities=18%  Similarity=0.204  Sum_probs=228.7

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      +++.++++++.++. +|..+     .+.++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDL-----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSC-----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEecCCCccc-cCccC-----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            78999999998874 55544     4788999999999998777789999999999999999997778899999999999


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccc--cCCccccCCCCcCEEEccCC
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNG--SLPVQLCHLTFLRILDVAHN  184 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n  184 (433)
                      ++++|.++. +|..+.  ++|++|++++|.+. .++...+..+++|++|++++|.+..  ..+..+.++++|+.|++++|
T Consensus       106 ~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  181 (330)
T 1xku_A          106 YLSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  181 (330)
T ss_dssp             ECCSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             ECCCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence            999999884 454443  78999999999984 5666655589999999999998863  56778889999999999999


Q ss_pred             cCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476          185 NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN  264 (433)
Q Consensus       185 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  264 (433)
                      .++ .+|..+.  ++|+.|+++.+..                    ....+..+..+++|+.|++++|.+++..+..+..
T Consensus       182 ~l~-~l~~~~~--~~L~~L~l~~n~l--------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          182 NIT-TIPQGLP--PSLTELHLDGNKI--------------------TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             CCC-SCCSSCC--TTCSEEECTTSCC--------------------CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             ccc-cCCcccc--ccCCEEECCCCcC--------------------CccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence            987 5665543  7888888877641                    1112334556788999999999999888888999


Q ss_pred             CccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccC------CCCCCeeeCcCCcCccc-CCC--Ccc
Q 042476          265 LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSS------LSFLNHLNLSENDLSGQ-IPS--STQ  335 (433)
Q Consensus       265 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~~-~p~--~~~  335 (433)
                      +++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..|..      ...++.+++++|++... +++  ...
T Consensus       239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~  317 (330)
T 1xku_A          239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  317 (330)
T ss_dssp             STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence            999999999999998 78888999999999999999998777666643      37789999999998742 221  133


Q ss_pred             cCccCcccccCC
Q 042476          336 LQSFGASCFSGN  347 (433)
Q Consensus       336 ~~~l~~~~~~~n  347 (433)
                      +..++.+++++|
T Consensus       318 ~~~l~~l~L~~N  329 (330)
T 1xku_A          318 VYVRAAVQLGNY  329 (330)
T ss_dssp             CCCGGGEEC---
T ss_pred             ccceeEEEeccc
Confidence            455667777766

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=1.1e-30  Score=245.19  Aligned_cols=287  Identities=19%  Similarity=0.237  Sum_probs=233.5

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476           26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS  105 (433)
Q Consensus        26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~  105 (433)
                      .+++.++++++.++ .+|..+     .++++.|++++|.+.+..+..|.++++|++|++++|.+++..|.+|.++++|++
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~-----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  106 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEI-----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK  106 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCC-----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred             ccCCEEECCCCCcc-ccCCCC-----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence            36999999999987 456555     578999999999999888889999999999999999999888999999999999


Q ss_pred             EEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcccc--ccCCccccCCCCcCEEEccC
Q 042476          106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN--GSLPVQLCHLTFLRILDVAH  183 (433)
Q Consensus       106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~  183 (433)
                      |++++|.+. .+|..+.  ++|++|++++|.+. .++...+..+++|++|++++|.+.  +..+..+..+ +|+.|++++
T Consensus       107 L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~  181 (332)
T 2ft3_A          107 LYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE  181 (332)
T ss_dssp             EECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred             EECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence            999999998 4555443  89999999999994 666666668999999999999986  3567778888 999999999


Q ss_pred             CcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcccc
Q 042476          184 NNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLT  263 (433)
Q Consensus       184 n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~  263 (433)
                      |.++ .+|..+.  ++|+.|+++.+..                    .......+..+++|+.|++++|.+++..+..+.
T Consensus       182 n~l~-~l~~~~~--~~L~~L~l~~n~i--------------------~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          182 AKLT-GIPKDLP--ETLNELHLDHNKI--------------------QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             SBCS-SCCSSSC--SSCSCCBCCSSCC--------------------CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             CCCC-ccCcccc--CCCCEEECCCCcC--------------------CccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence            9998 4666554  6888888887651                    112223445678899999999999988888899


Q ss_pred             CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccC------CCCCCeeeCcCCcCc--ccCCCC-c
Q 042476          264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSS------LSFLNHLNLSENDLS--GQIPSS-T  334 (433)
Q Consensus       264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~--~~~p~~-~  334 (433)
                      .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+..      ...|+.+++++|++.  +..|.. .
T Consensus       239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~  317 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR  317 (332)
T ss_dssp             GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred             CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence            9999999999999998 78888999999999999999998777766654      367899999999987  333322 3


Q ss_pred             ccCccCcccccCC
Q 042476          335 QLQSFGASCFSGN  347 (433)
Q Consensus       335 ~~~~l~~~~~~~n  347 (433)
                      .++.++.+++++|
T Consensus       318 ~l~~L~~l~l~~n  330 (332)
T 2ft3_A          318 CVTDRLAIQFGNY  330 (332)
T ss_dssp             TBCCSTTEEC---
T ss_pred             ccchhhhhhcccc
Confidence            4566777777776

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.2e-30  Score=241.73  Aligned_cols=268  Identities=16%  Similarity=0.244  Sum_probs=207.9

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      .++++.++++++.++ .+|..+.  +.+++|++++|.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|+
T Consensus        30 ~c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           30 QCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EEETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            457888888888877 4555443  5788899999888876666888888999999999888877788888888999999


Q ss_pred             CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcc--cCCCCcccccccccccccccc
Q 042476          132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSG--TIPRCINNFTAMATINSSNQK  209 (433)
Q Consensus       132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~~~  209 (433)
                      +++|.+ ..+|..++   ++|++|++++|.+.+..+..+.++++|+.|++++|.+..  ..+..+..+++|+.|+++.+.
T Consensus       107 Ls~n~l-~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          107 LSKNQL-KELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             CCSSCC-SBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CCCCcC-CccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            998888 46666553   688899999888887666678888889999998888853  566778888888888887765


Q ss_pred             ccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCC
Q 042476          210 NAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNM  289 (433)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l  289 (433)
                      ...                     .+.  ...++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+
T Consensus       183 l~~---------------------l~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          183 ITT---------------------IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             CCS---------------------CCS--SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ccc---------------------CCc--cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence            210                     000  012568889999998887778888888899999999998887777788888


Q ss_pred             CCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCc-------ccCccCcccccCCcCC
Q 042476          290 RSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSST-------QLQSFGASCFSGNDLC  350 (433)
Q Consensus       290 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-------~~~~l~~~~~~~n~l~  350 (433)
                      ++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+...       ....+..+++++|++.
T Consensus       240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            88999999999886 677778888889999999998886544331       2345666778888654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=4.1e-31  Score=267.24  Aligned_cols=295  Identities=18%  Similarity=0.170  Sum_probs=240.1

Q ss_pred             CCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEE
Q 042476           51 NKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISL  130 (433)
Q Consensus        51 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  130 (433)
                      .+.+++.+++++|.+....+..|.++++|++|+|++|.+.+..|..|.++++|++|++++|.+.+..|..|+.+++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            36889999999999997777778899999999999999998888899999999999999999999888889999999999


Q ss_pred             ECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccc
Q 042476          131 DIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKN  210 (433)
Q Consensus       131 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~  210 (433)
                      ++++|.+ ..+|..++..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.   .+..+++|+.++++.+..
T Consensus       129 ~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          129 VLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             ECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EeeCCCC-CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            9999999 478887766899999999999999988888999999999999999999853   256677888888777642


Q ss_pred             cccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCC
Q 042476          211 AIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMR  290 (433)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  290 (433)
                      ......  .......+....-....  ....++|+.|++++|.+++  +..+..+++|+.|+|++|.+++..|..++.++
T Consensus       205 ~~l~~~--~~L~~L~ls~n~l~~~~--~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  278 (597)
T 3oja_B          205 STLAIP--IAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  278 (597)
T ss_dssp             SEEECC--TTCSEEECCSSCCCEEE--CSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             ccccCC--chhheeeccCCcccccc--cccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence            211100  00000000000000011  1123579999999999986  36788999999999999999999999999999


Q ss_pred             CCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCCCCC
Q 042476          291 SIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPLPD  356 (433)
Q Consensus       291 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~~~  356 (433)
                      +|+.|++++|.+++ +|..+..+++|+.|++++|.+++.++....++.++.+++++|.+.+.+...
T Consensus       279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~  343 (597)
T 3oja_B          279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST  343 (597)
T ss_dssp             SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCT
T ss_pred             CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhh
Confidence            99999999999975 566677899999999999999965545577889999999999888776443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=3.1e-30  Score=263.09  Aligned_cols=332  Identities=20%  Similarity=0.176  Sum_probs=243.6

Q ss_pred             CCCCC-CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccC
Q 042476           20 PLPYQ-PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIG   98 (433)
Q Consensus        20 ~~p~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~   98 (433)
                      .+|.. ++++++|||++|++++..+..|   .++++|++|+|++|+|+++.+++|.++++|++|+|++|++++..+.+|.
T Consensus        45 ~vP~~lp~~~~~LdLs~N~i~~l~~~~f---~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~  121 (635)
T 4g8a_A           45 KIPDNLPFSTKNLDLSFNPLRHLGSYSF---FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS  121 (635)
T ss_dssp             SCCSSSCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred             ccCCCCCcCCCEEEeeCCCCCCCCHHHH---hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence            56655 5689999999999998888788   5699999999999999988889999999999999999999977778899


Q ss_pred             CCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccc-cCChhhhhcCCCccEEEeeCccccccCCccccCCC---
Q 042476           99 TLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFG-SIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLT---  174 (433)
Q Consensus        99 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~---  174 (433)
                      ++++|++|++++|.+++..+..|+++++|++|++++|.+.. ..|..+. .+++|++|++++|.+.+..+..+..++   
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~  200 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  200 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhh
Confidence            99999999999999998888889999999999999999854 3455544 799999999999987654333222111   


Q ss_pred             --------------------------------------------------------------------------------
Q 042476          175 --------------------------------------------------------------------------------  174 (433)
Q Consensus       175 --------------------------------------------------------------------------------  174 (433)
                                                                                                      
T Consensus       201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  280 (635)
T 4g8a_A          201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN  280 (635)
T ss_dssp             TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred             hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence                                                                                            


Q ss_pred             ------------------------------------------------CcCEEEccCCcCcccCCC--------------
Q 042476          175 ------------------------------------------------FLRILDVAHNNLSGTIPR--------------  192 (433)
Q Consensus       175 ------------------------------------------------~L~~L~l~~n~~~~~~p~--------------  192 (433)
                                                                      .++.|++.+|.+....+.              
T Consensus       281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~  360 (635)
T 4g8a_A          281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK  360 (635)
T ss_dssp             SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCC
T ss_pred             hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccccc
Confidence                                                            112222222221110000              


Q ss_pred             -----Cccccccccccccccccccccccc-----cCCceeeec------------------ce-------eeeccceeeh
Q 042476          193 -----CINNFTAMATINSSNQKNAIYYFV-----TRGNIVFED------------------AS-------VVTKGLLVEY  237 (433)
Q Consensus       193 -----~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~------------------~~-------~~~~~~~~~~  237 (433)
                           ....+++|+.++++.+........     .........                  ..       ..........
T Consensus       361 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~  440 (635)
T 4g8a_A          361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV  440 (635)
T ss_dssp             SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred             CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccc
Confidence                 011233344444444322110000     000000000                  00       0001111233


Q ss_pred             hhhccceeEEEcccCcccccCCccccCCccCceEeCcCccc-ccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCC
Q 042476          238 NSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFF-VGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFL  316 (433)
Q Consensus       238 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  316 (433)
                      +..+.+++.++++.|.+.+..+..+..++.|+.|++++|++ .+..|..+..+++|+.|+|++|++++..|..|.++++|
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence            45677889999999999888888899999999999999985 44578889999999999999999999999999999999


Q ss_pred             CeeeCcCCcCcccCCCC-cccCccCcccccCCcCCCCCCC
Q 042476          317 NHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDLCGAPLP  355 (433)
Q Consensus       317 ~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~~~  355 (433)
                      +.|+|++|++++..|.. ..++.++.+++++|.+.+.+..
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence            99999999999876653 5678899999999999877544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.7e-30  Score=243.71  Aligned_cols=267  Identities=17%  Similarity=0.227  Sum_probs=222.8

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      .++++.++++++.++ .+|..+  .+++++|++++|.+....|.+|.++++|++|++++|.+++..|..+..+++|++|+
T Consensus        32 ~c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EEETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            457999999999988 566655  36899999999999977788999999999999999999988899999999999999


Q ss_pred             CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc--ccCCCCcccccccccccccccc
Q 042476          132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS--GTIPRCINNFTAMATINSSNQK  209 (433)
Q Consensus       132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~l~~~~  209 (433)
                      +++|.+ ..+|..++   ++|++|++++|.+....+..+..+++|++|++++|.+.  +..+..+..+ +|+.|+++.+.
T Consensus       109 L~~n~l-~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          109 ISKNHL-VEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             CCSSCC-CSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             CCCCcC-CccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence            999998 47777654   79999999999999766677999999999999999996  3667777777 88999888765


Q ss_pred             ccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCC
Q 042476          210 NAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNM  289 (433)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l  289 (433)
                      ...                     .+.  ...++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+
T Consensus       184 l~~---------------------l~~--~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  240 (332)
T 2ft3_A          184 LTG---------------------IPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL  240 (332)
T ss_dssp             CSS---------------------CCS--SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred             CCc---------------------cCc--cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence            211                     000  112579999999999998888889999999999999999998888889999


Q ss_pred             CCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCc-------ccCccCcccccCCcCC
Q 042476          290 RSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSST-------QLQSFGASCFSGNDLC  350 (433)
Q Consensus       290 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-------~~~~l~~~~~~~n~l~  350 (433)
                      ++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+...       ....+..+++++|++.
T Consensus       241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            99999999999997 778889999999999999999997544331       1345677888888664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=2.7e-30  Score=253.75  Aligned_cols=305  Identities=22%  Similarity=0.251  Sum_probs=220.4

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +++++.|+++++.+.. ++. +   ..+++|++|++++|.+++..+  +.++++|++|++++|.+.+..+  +.++++|+
T Consensus        45 l~~l~~L~l~~~~i~~-l~~-~---~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  115 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-IDG-V---EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT  115 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CTT-G---GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             hccccEEecCCCCCcc-Ccc-h---hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence            5689999999999875 332 3   458999999999999986544  8999999999999999996544  99999999


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCCh-------------------hhhhcCCCccEEEeeCcccccc
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPT-------------------WVGERFPRLLILNLRSNKFNGS  165 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-------------------~~~~~l~~L~~L~L~~n~l~~~  165 (433)
                      +|++++|.+.+..+  +..+++|++|++++|.+.+ ++.                   ..+..+++|++|++++|.+...
T Consensus       116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (466)
T 1o6v_A          116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI  192 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             EEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC
Confidence            99999999986543  8899999999999998743 321                   0123678999999999998743


Q ss_pred             CCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccccccc-CCceeeecceeeeccceeehhhhccce
Q 042476          166 LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVT-RGNIVFEDASVVTKGLLVEYNSILNLV  244 (433)
Q Consensus       166 ~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L  244 (433)
                        ..+..+++|+.|++++|.+.+..|  +..+++|+.|+++.+.......+. ........+........ ..+..+++|
T Consensus       193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~l~~L  267 (466)
T 1o6v_A          193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKL  267 (466)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTC
T ss_pred             --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc-hhhhcCCCC
Confidence              458899999999999999986544  778999999999887532211110 00010001111000111 114556777


Q ss_pred             eEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCC
Q 042476          245 RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEN  324 (433)
Q Consensus       245 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  324 (433)
                      +.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|++++..|  +..+++|+.|++++|
T Consensus       268 ~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS
T ss_pred             CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC
Confidence            777777777765433  6677777888888777765433  6677788888888887776554  567778888888888


Q ss_pred             cCcccCCCCcccCccCcccccCCcCCCCC
Q 042476          325 DLSGQIPSSTQLQSFGASCFSGNDLCGAP  353 (433)
Q Consensus       325 ~l~~~~p~~~~~~~l~~~~~~~n~l~~~~  353 (433)
                      ++++. +....++.++.+++++|.+.+.+
T Consensus       342 ~l~~~-~~l~~l~~L~~L~l~~n~l~~~~  369 (466)
T 1o6v_A          342 KVSDV-SSLANLTNINWLSAGHNQISDLT  369 (466)
T ss_dssp             CCCCC-GGGTTCTTCCEEECCSSCCCBCG
T ss_pred             ccCCc-hhhccCCCCCEEeCCCCccCccc
Confidence            87764 55566777777888888776543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=1.1e-29  Score=247.89  Aligned_cols=271  Identities=18%  Similarity=0.157  Sum_probs=173.8

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +||+++|.+++. |++  +.    +++|++|++++|++++. +  +   ..+++|++|++++|.+++. +  +.++++|+
T Consensus        46 ~L~Ls~n~l~~~-~~l--~~----l~~L~~L~Ls~n~l~~~-~--~---~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           46 SLDCHNSSITDM-TGI--EK----LTGLTKLICTSNNITTL-D--L---SQNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             EEECCSSCCCCC-TTG--GG----CTTCSEEECCSSCCSCC-C--C---TTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             EEEccCCCcccC-hhh--cc----cCCCCEEEccCCcCCeE-c--c---ccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            478999999864 543  22    56888999998888874 2  3   4588888888888888864 3  77888888


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN  160 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  160 (433)
                      +|++++|++++ +|  ++.+++|++|++++|.+++. +  +..+++|++|++++|...+.++  + ..+++|++|++++|
T Consensus       110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD--V-TPQTQLTTLDCSFN  180 (457)
T ss_dssp             EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC--C-TTCTTCCEEECCSS
T ss_pred             EEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc--c-ccCCcCCEEECCCC
Confidence            88888888885 44  77888888888888888764 2  6677788888888875445552  2 25777777777777


Q ss_pred             cccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhh
Q 042476          161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI  240 (433)
Q Consensus       161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (433)
                      .+++ +|  +..+++|+.|++++|.+++.   .+..+++|+.|+++.+.....                     +  ...
T Consensus       181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i---------------------p--~~~  231 (457)
T 3bz5_A          181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI---------------------D--VTP  231 (457)
T ss_dssp             CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---------------------C--CTT
T ss_pred             ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc---------------------C--ccc
Confidence            7775 33  66677777777777777643   366667777777666542110                     0  222


Q ss_pred             ccceeEEEcccCcccccCCcc-----------------------------ccCCccCceEeCcCcccccCCCc-------
Q 042476          241 LNLVRSIDISKNNFSGEIPMQ-----------------------------LTNLEGLQTLNLSHNFFVGKIPE-------  284 (433)
Q Consensus       241 ~~~L~~L~L~~n~~~~~~~~~-----------------------------~~~l~~L~~L~Ls~n~l~~~~~~-------  284 (433)
                      +++|+.|++++|.+++..+..                             +..+++|+.|++++|...+.+|.       
T Consensus       232 l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~  311 (457)
T 3bz5_A          232 LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITE  311 (457)
T ss_dssp             CTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred             cCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceE
Confidence            334444444444444332222                             23445555566655554433332       


Q ss_pred             -ccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcc
Q 042476          285 -NIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG  328 (433)
Q Consensus       285 -~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  328 (433)
                       .+..+++|+.|++++|++++. +  +..+++|+.|++++|++++
T Consensus       312 L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          312 LDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             CCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             echhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence             134445666666666666552 2  5566666666666666664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=6.9e-30  Score=241.21  Aligned_cols=277  Identities=20%  Similarity=0.301  Sum_probs=228.9

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +|++++|.+++..+ +  +.    +++|++|++++|.+++.  +.+   ..+++|++|++++|.+.+..+  +..+++|+
T Consensus        70 ~L~l~~n~i~~~~~-~--~~----l~~L~~L~L~~n~i~~~--~~~---~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~  135 (347)
T 4fmz_A           70 YLNLNGNQITDISP-L--SN----LVKLTNLYIGTNKITDI--SAL---QNLTNLRELYLNEDNISDISP--LANLTKMY  135 (347)
T ss_dssp             EEECCSSCCCCCGG-G--TT----CTTCCEEECCSSCCCCC--GGG---TTCTTCSEEECTTSCCCCCGG--GTTCTTCC
T ss_pred             EEEccCCccccchh-h--hc----CCcCCEEEccCCcccCc--hHH---cCCCcCCEEECcCCcccCchh--hccCCcee
Confidence            48999999996533 2  22    67899999999999863  234   569999999999999986433  88999999


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN  160 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  160 (433)
                      +|++++|..... +..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++.  ...+++|+.+++++|
T Consensus       136 ~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n  209 (347)
T 4fmz_A          136 SLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVN  209 (347)
T ss_dssp             EEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSS
T ss_pred             EEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccC
Confidence            999999976644 4458999999999999999885543  889999999999999984 4544  347999999999999


Q ss_pred             cccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhh
Q 042476          161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI  240 (433)
Q Consensus       161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (433)
                      .+....+  +..+++|++|++++|.+++ .+. +..+++|+.|+++.+....                      ...+..
T Consensus       210 ~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~----------------------~~~~~~  263 (347)
T 4fmz_A          210 QITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD----------------------INAVKD  263 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC----------------------CGGGTT
T ss_pred             CCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC----------------------ChhHhc
Confidence            9985433  8899999999999999984 443 8899999999998875111                      123456


Q ss_pred             ccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeee
Q 042476          241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLN  320 (433)
Q Consensus       241 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  320 (433)
                      +++|+.|++++|.+++.  ..+..+++|+.|++++|++++..+..++.+++|+.|++++|++++..|  +..+++|+.|+
T Consensus       264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  339 (347)
T 4fmz_A          264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD  339 (347)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred             CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence            78999999999999864  457889999999999999998888999999999999999999987666  78899999999


Q ss_pred             CcCCcCc
Q 042476          321 LSENDLS  327 (433)
Q Consensus       321 L~~n~l~  327 (433)
                      +++|+++
T Consensus       340 l~~N~i~  346 (347)
T 4fmz_A          340 FANQVIK  346 (347)
T ss_dssp             SSCC---
T ss_pred             hhhhccc
Confidence            9999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=245.64  Aligned_cols=282  Identities=19%  Similarity=0.196  Sum_probs=214.9

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      ++.....+.++++++. +|..+     .++|++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|+
T Consensus        30 C~~~~~c~~~~~~l~~-iP~~~-----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           30 CDRNGICKGSSGSLNS-IPSGL-----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             ECTTSEEECCSTTCSS-CCTTC-----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCeEeeCCCCCccc-ccccc-----cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            5556677888888774 45444     45788888888888876666788888888888888888877777888888888


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCCh-hhhhcCCCccEEEeeCcc-ccccCCccccCCCCcCEEEcc
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPT-WVGERFPRLLILNLRSNK-FNGSLPVQLCHLTFLRILDVA  182 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~  182 (433)
                      +|++++|.+++..+..+..+++|++|++++|.+. .+|. ..+..+++|++|++++|. +....+..+.++++|++|+++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  182 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID  182 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence            8888888888655555788888888888888874 5665 444478888888888884 665556778888888888888


Q ss_pred             CCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccc
Q 042476          183 HNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQL  262 (433)
Q Consensus       183 ~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~  262 (433)
                      +|.+.+..|..+..+++|+.|+++.+..                    ..........+++|+.|++++|.+++..+..+
T Consensus       183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l--------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  242 (353)
T 2z80_A          183 ASDLQSYEPKSLKSIQNVSHLILHMKQH--------------------ILLLEIFVDVTSSVECLELRDTDLDTFHFSEL  242 (353)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSCS--------------------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred             CCCcCccCHHHHhccccCCeecCCCCcc--------------------ccchhhhhhhcccccEEECCCCcccccccccc
Confidence            8888877788888888888887776641                    11111223457889999999999987654433


Q ss_pred             c---CCccCceEeCcCccccc----CCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC
Q 042476          263 T---NLEGLQTLNLSHNFFVG----KIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS  333 (433)
Q Consensus       263 ~---~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~  333 (433)
                      .   ....++.++|+++.+.+    .+|..+..+++|+.|++++|+++...+..+..+++|+.|++++|+++|.+|..
T Consensus       243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l  320 (353)
T 2z80_A          243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  320 (353)
T ss_dssp             ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence            2   35678888888888765    36777889999999999999998544444689999999999999999877643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.4e-29  Score=234.76  Aligned_cols=253  Identities=21%  Similarity=0.221  Sum_probs=201.3

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCccc--CCcccCCCCCcCE
Q 042476           28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGN--LPISIGTLSSLRS  105 (433)
Q Consensus        28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~  105 (433)
                      -+.++.+++.++. +|..+     .+++++|++++|.++...+..|.++++|++|++++|.+...  .+..+.++++|++
T Consensus         9 ~~~l~c~~~~l~~-ip~~~-----~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~   82 (306)
T 2z66_A            9 GTEIRCNSKGLTS-VPTGI-----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY   82 (306)
T ss_dssp             TTEEECCSSCCSS-CCSCC-----CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred             CCEEEcCCCCccc-CCCCC-----CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence            3567777777764 44444     46888899998888865556678888999999998888733  3566677889999


Q ss_pred             EEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCc
Q 042476          106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNN  185 (433)
Q Consensus       106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  185 (433)
                      |++++|.+. .+|..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            999999887 4566688889999999999888433332344478899999999998887778888888999999999888


Q ss_pred             Ccc-cCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476          186 LSG-TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN  264 (433)
Q Consensus       186 ~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  264 (433)
                      +.+ ..|..+..                                            +++|++|++++|.+++..|..+..
T Consensus       162 l~~~~~~~~~~~--------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~  197 (306)
T 2z66_A          162 FQENFLPDIFTE--------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNS  197 (306)
T ss_dssp             EGGGEECSCCTT--------------------------------------------CTTCCEEECTTSCCCEECTTTTTT
T ss_pred             cccccchhHHhh--------------------------------------------CcCCCEEECCCCCcCCcCHHHhcC
Confidence            875 34554443                                            445788888999988877888889


Q ss_pred             CccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCC-CCCeeeCcCCcCcccCC
Q 042476          265 LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLS-FLNHLNLSENDLSGQIP  331 (433)
Q Consensus       265 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p  331 (433)
                      +++|++|+|++|++++..+..+..+++|+.|++++|++++..|..+..++ +|+.|++++|++++..+
T Consensus       198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            99999999999999877777888899999999999999988888888884 89999999999987654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=3.4e-29  Score=244.94  Aligned_cols=253  Identities=23%  Similarity=0.239  Sum_probs=214.9

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      ..+.++.+++.++. +|..+     .+++++|+|++|++++..+..|.++++|++|+|++|.+.+..+..|.++++|++|
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  128 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGI-----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL  128 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCC-----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCcEEEECCCCcCc-cCCCC-----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence            35678888888764 55544     4689999999999998888899999999999999999998888889999999999


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc-ccccCCccccCCCCcCEEEccCCc
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK-FNGSLPVQLCHLTFLRILDVAHNN  185 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~  185 (433)
                      ++++|.++...+..|..+++|++|++++|.+ ..++...+..+++|++|++++|+ +....+..+.++++|+.|++++|.
T Consensus       129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             ECCSSCCSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ECCCCcCCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            9999999977777788999999999999998 46666666689999999999854 443444578889999999999998


Q ss_pred             CcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCC
Q 042476          186 LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL  265 (433)
Q Consensus       186 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l  265 (433)
                      ++ .+|. +.                                            .+++|+.|++++|.+++..|..|.++
T Consensus       208 l~-~~~~-~~--------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l  241 (452)
T 3zyi_A          208 IK-DMPN-LT--------------------------------------------PLVGLEELEMSGNHFPEIRPGSFHGL  241 (452)
T ss_dssp             CS-SCCC-CT--------------------------------------------TCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred             cc-cccc-cc--------------------------------------------ccccccEEECcCCcCcccCcccccCc
Confidence            87 3332 11                                            24568999999999998889999999


Q ss_pred             ccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC
Q 042476          266 EGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS  332 (433)
Q Consensus       266 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  332 (433)
                      ++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.+..
T Consensus       242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            9999999999999988899999999999999999999988888899999999999999999886653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=3.8e-29  Score=243.73  Aligned_cols=253  Identities=23%  Similarity=0.234  Sum_probs=214.1

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      ..+.++.+++.++. +|..+     .++++.|+|++|+++...+..|.++++|++|+|++|.+....+.+|.++++|++|
T Consensus        44 ~~~~v~c~~~~l~~-iP~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L  117 (440)
T 3zyj_A           44 QFSKVICVRKNLRE-VPDGI-----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL  117 (440)
T ss_dssp             TSCEEECCSCCCSS-CCSCC-----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred             CCCEEEeCCCCcCc-CCCCC-----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence            35678888888763 55555     5788999999999998888889999999999999999987777889999999999


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc-ccccCCccccCCCCcCEEEccCCc
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK-FNGSLPVQLCHLTFLRILDVAHNN  185 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~  185 (433)
                      ++++|.++...+..|..+++|++|++++|.+ ..++...+..+++|++|++++|+ +....+..+.++++|+.|++++|.
T Consensus       118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             ECCSSCCSSCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             ECCCCcCCeeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            9999999877777888999999999999988 46666666688999999999854 443444578889999999999998


Q ss_pred             CcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCC
Q 042476          186 LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL  265 (433)
Q Consensus       186 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l  265 (433)
                      ++ .+|. +                                            ..+++|+.|++++|.+++..|..|.++
T Consensus       197 l~-~~~~-~--------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l  230 (440)
T 3zyj_A          197 LR-EIPN-L--------------------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGL  230 (440)
T ss_dssp             CS-SCCC-C--------------------------------------------TTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred             Cc-cccc-c--------------------------------------------CCCcccCEEECCCCccCccChhhhccC
Confidence            87 4442 1                                            124568999999999998889999999


Q ss_pred             ccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC
Q 042476          266 EGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS  332 (433)
Q Consensus       266 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  332 (433)
                      ++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.+..
T Consensus       231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            9999999999999988899999999999999999999988888899999999999999999886653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=8.6e-30  Score=236.21  Aligned_cols=274  Identities=20%  Similarity=0.243  Sum_probs=220.9

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCc--CCcccCCCCCC
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGD--IPDCWMNWPHL   79 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L   79 (433)
                      ++.+++.++ .+|.    .+   .+++++|++++|++++..+..+   .++++|++|++++|.++..  .+..+..+++|
T Consensus        12 l~c~~~~l~-~ip~----~~---~~~l~~L~L~~n~l~~i~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L   80 (306)
T 2z66_A           12 IRCNSKGLT-SVPT----GI---PSSATRLELESNKLQSLPHGVF---DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL   80 (306)
T ss_dssp             EECCSSCCS-SCCS----CC---CTTCCEEECCSSCCCCCCTTTT---TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred             EEcCCCCcc-cCCC----CC---CCCCCEEECCCCccCccCHhHh---hccccCCEEECCCCccCcccCccccccccccc
Confidence            456666666 3342    11   4589999999999986554445   5599999999999998733  36667789999


Q ss_pred             CEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCC-ccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEee
Q 042476           80 QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP-VSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLR  158 (433)
Q Consensus        80 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  158 (433)
                      ++|++++|.+. .+|..+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+. .+++|++|+++
T Consensus        81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~  158 (306)
T 2z66_A           81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMA  158 (306)
T ss_dssp             CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECT
T ss_pred             CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECC
Confidence            99999999998 577789999999999999999987655 5789999999999999999655555444 79999999999


Q ss_pred             Cccccc-cCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeeh
Q 042476          159 SNKFNG-SLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEY  237 (433)
Q Consensus       159 ~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (433)
                      +|.+.+ ..|..+..+++|++|++++|.+++..|..+..+                                        
T Consensus       159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l----------------------------------------  198 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL----------------------------------------  198 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC----------------------------------------
T ss_pred             CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC----------------------------------------
Confidence            999986 578899999999999999999986666655443                                        


Q ss_pred             hhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCC-CCCEEeCcCCcCCCCCC--ccccCCC
Q 042476          238 NSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMR-SIESLDFSTNRLFGRIP--QSMSSLS  314 (433)
Q Consensus       238 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~--~~l~~l~  314 (433)
                          ++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..++ +|+.|++++|.++...+  .....+.
T Consensus       199 ----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~  274 (306)
T 2z66_A          199 ----SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK  274 (306)
T ss_dssp             ----TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred             ----CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence                4478899999999877777889999999999999999999999999885 99999999999976432  1123334


Q ss_pred             CCCeeeCcCCcCcccCCC
Q 042476          315 FLNHLNLSENDLSGQIPS  332 (433)
Q Consensus       315 ~L~~L~L~~n~l~~~~p~  332 (433)
                      ..+.+.+..+.+.|..|.
T Consensus       275 ~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          275 DQRQLLVEVERMECATPS  292 (306)
T ss_dssp             HTGGGBSCGGGCBEEESG
T ss_pred             hhhhhhccccccccCCch
Confidence            455666677777776664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=2.4e-29  Score=235.10  Aligned_cols=227  Identities=21%  Similarity=0.286  Sum_probs=183.3

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      .++++.|++++|.++ .+|..+.++++|++|+|++|.+. .+|..++++++|++|++++|.+. .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467788888888877 56777777888888888888887 77777888888888888888887 6677788888888888


Q ss_pred             CcCccccccCChhhh--------hcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccc
Q 042476          132 IGENDFFGSIPTWVG--------ERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATI  203 (433)
Q Consensus       132 L~~n~~~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  203 (433)
                      +++|...+.+|..+.        ..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..       
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~-------  227 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH-------  227 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG-------
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc-------
Confidence            888777677776653        24788888888888887 67778888888888888888887 34443333       


Q ss_pred             ccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCC
Q 042476          204 NSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIP  283 (433)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  283 (433)
                                                           +++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|
T Consensus       228 -------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          228 -------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             -------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred             -------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence                                                 4457888888888888888888899999999999998888899


Q ss_pred             cccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCc
Q 042476          284 ENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS  327 (433)
Q Consensus       284 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  327 (433)
                      ..++.+++|+.|++++|++.+.+|..+.++++|+.+++..+.+.
T Consensus       271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            88999999999999999998899999999999999988877655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=2.3e-28  Score=238.99  Aligned_cols=235  Identities=23%  Similarity=0.246  Sum_probs=207.5

Q ss_pred             CCCCC-CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccC
Q 042476           20 PLPYQ-PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIG   98 (433)
Q Consensus        20 ~~p~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~   98 (433)
                      .+|.. .+++++|++++|++++..+..|   .++++|++|++++|.+++..+..|.++++|++|+|++|.++...+..|.
T Consensus        68 ~iP~~~~~~l~~L~L~~n~i~~~~~~~~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  144 (452)
T 3zyi_A           68 EVPQGIPSNTRYLNLMENNIQMIQADTF---RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE  144 (452)
T ss_dssp             SCCSCCCTTCSEEECCSSCCCEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred             ccCCCCCCCccEEECcCCcCceECHHHc---CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence            34443 5689999999999999888887   5699999999999999998889999999999999999999977777899


Q ss_pred             CCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCE
Q 042476           99 TLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRI  178 (433)
Q Consensus        99 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  178 (433)
                      ++++|++|++++|.+....+..|..+++|++|++++|...+.++...+..+++|++|++++|.+.+ +| .+..+++|++
T Consensus       145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~  222 (452)
T 3zyi_A          145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEE  222 (452)
T ss_dssp             SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCE
T ss_pred             ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccE
Confidence            999999999999999988888899999999999999665578888777789999999999999985 44 5889999999


Q ss_pred             EEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccC
Q 042476          179 LDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEI  258 (433)
Q Consensus       179 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~  258 (433)
                      |++++|.+.+..|..+..+                                            ++|+.|++++|.+++..
T Consensus       223 L~Ls~N~l~~~~~~~~~~l--------------------------------------------~~L~~L~L~~n~l~~~~  258 (452)
T 3zyi_A          223 LEMSGNHFPEIRPGSFHGL--------------------------------------------SSLKKLWVMNSQVSLIE  258 (452)
T ss_dssp             EECTTSCCSEECGGGGTTC--------------------------------------------TTCCEEECTTSCCCEEC
T ss_pred             EECcCCcCcccCcccccCc--------------------------------------------cCCCEEEeCCCcCceEC
Confidence            9999999986666655443                                            45788999999999888


Q ss_pred             CccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC
Q 042476          259 PMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF  303 (433)
Q Consensus       259 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  303 (433)
                      +..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus       259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            889999999999999999999777788899999999999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2.2e-28  Score=238.29  Aligned_cols=234  Identities=24%  Similarity=0.245  Sum_probs=207.1

Q ss_pred             CCCC-CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCC
Q 042476           21 LPYQ-PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT   99 (433)
Q Consensus        21 ~p~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~   99 (433)
                      +|.. .++++.|++++|++++..+..+   .++++|++|+|++|.++...+..|.++++|++|+|++|.++...+..|.+
T Consensus        58 iP~~~~~~l~~L~L~~n~i~~~~~~~~---~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  134 (440)
T 3zyj_A           58 VPDGISTNTRLLNLHENQIQIIKVNSF---KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY  134 (440)
T ss_dssp             CCSCCCTTCSEEECCSCCCCEECTTTT---SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred             CCCCCCCCCcEEEccCCcCCeeCHHHh---hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence            4433 5689999999999998887777   56999999999999999888899999999999999999999766778999


Q ss_pred             CCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEE
Q 042476          100 LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL  179 (433)
Q Consensus       100 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  179 (433)
                      +++|++|++++|.+....+..|..+++|++|++++|...+.++...+..+++|++|++++|.+. .+| .+..+++|++|
T Consensus       135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L  212 (440)
T 3zyj_A          135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDEL  212 (440)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEE
T ss_pred             cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEE
Confidence            9999999999999998888889999999999999976657888877778999999999999998 455 58899999999


Q ss_pred             EccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCC
Q 042476          180 DVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIP  259 (433)
Q Consensus       180 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~  259 (433)
                      ++++|.+++..|..+..+                                            ++|+.|++++|.+++..+
T Consensus       213 ~Ls~N~l~~~~~~~~~~l--------------------------------------------~~L~~L~L~~n~l~~~~~  248 (440)
T 3zyj_A          213 DLSGNHLSAIRPGSFQGL--------------------------------------------MHLQKLWMIQSQIQVIER  248 (440)
T ss_dssp             ECTTSCCCEECTTTTTTC--------------------------------------------TTCCEEECTTCCCCEECT
T ss_pred             ECCCCccCccChhhhccC--------------------------------------------ccCCEEECCCCceeEECh
Confidence            999999987667666554                                            447888999999998888


Q ss_pred             ccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC
Q 042476          260 MQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF  303 (433)
Q Consensus       260 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  303 (433)
                      ..|.++++|+.|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus       249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            89999999999999999999877888899999999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.4e-28  Score=225.71  Aligned_cols=224  Identities=18%  Similarity=0.176  Sum_probs=126.8

Q ss_pred             cEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEc
Q 042476           29 GLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHL  108 (433)
Q Consensus        29 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L  108 (433)
                      ++++.+++.++. +|..+     .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus        14 ~~~~c~~~~l~~-ip~~~-----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI-----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC-----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCcCCccc-CCcCC-----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            456666666653 33333     456677777777766665566666777777777777766655666666777777777


Q ss_pred             cCCc-ccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476          109 RNNR-LAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       109 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                      ++|. +....+..+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+....+..+..+++|++|++++|.++
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence            7765 555556666666666666666666643 32222335666666666666665444444556666666666666554


Q ss_pred             ccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCcc
Q 042476          188 GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEG  267 (433)
Q Consensus       188 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~  267 (433)
                      +..+..+..                                            +++|+.|++++|.+++..|..+..+++
T Consensus       167 ~~~~~~~~~--------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~  202 (285)
T 1ozn_A          167 SVPERAFRG--------------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (285)
T ss_dssp             EECTTTTTT--------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ccCHHHhcC--------------------------------------------ccccCEEECCCCcccccCHhHccCccc
Confidence            222222222                                            223444555555555444555555555


Q ss_pred             CceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC
Q 042476          268 LQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF  303 (433)
Q Consensus       268 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  303 (433)
                      |+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus       203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            555555555555443344555555555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.3e-28  Score=230.19  Aligned_cols=225  Identities=19%  Similarity=0.238  Sum_probs=202.9

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476           26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS  105 (433)
Q Consensus        26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~  105 (433)
                      ++++.|++++|.++ .+|..+   ..+++|++|++++|.++ .+|..+.++++|++|++++|.+. .+|..+.++++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l---~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQA---FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE  154 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCG---GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred             cceeEEEccCCCch-hcChhh---hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence            68999999999998 566666   44899999999999999 88999999999999999999999 78999999999999


Q ss_pred             EEccCCcccccCCccccC---------CCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCc
Q 042476          106 LHLRNNRLAGIFPVSLKN---------CSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL  176 (433)
Q Consensus       106 L~L~~n~l~~~~~~~~~~---------l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  176 (433)
                      |++++|.+.+.+|..+..         +++|++|++++|.+. .+|..+. .+++|++|++++|.+. .+|..+..+++|
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~-~l~~~l~~l~~L  231 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKL  231 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCC-CCCGGGGGCTTC
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCC-cCchhhccCCCC
Confidence            999999888888877654         999999999999995 8888876 7999999999999999 467789999999


Q ss_pred             CEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccc
Q 042476          177 RILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSG  256 (433)
Q Consensus       177 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~  256 (433)
                      ++|++++|.+.+.+|..+..++                                            +|+.|++++|.+.+
T Consensus       232 ~~L~Ls~n~~~~~~p~~~~~l~--------------------------------------------~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIFGGRA--------------------------------------------PLKRLILKDCSNLL  267 (328)
T ss_dssp             CEEECTTCTTCCBCCCCTTCCC--------------------------------------------CCCEEECTTCTTCC
T ss_pred             CEEECcCCcchhhhHHHhcCCC--------------------------------------------CCCEEECCCCCchh
Confidence            9999999999888887665544                                            47889999999988


Q ss_pred             cCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC
Q 042476          257 EIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF  303 (433)
Q Consensus       257 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  303 (433)
                      .+|..+..+++|+.|+|++|++.+.+|..++.+++|+.+++..+.+.
T Consensus       268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999999999999999999999999999999987664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=8e-28  Score=234.65  Aligned_cols=253  Identities=18%  Similarity=0.179  Sum_probs=195.3

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +++|++|++++|.+++. | .+   ..+++|++|++++|++++. |  +..+++|++|++++|.+++. +  ++++++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l---~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GI---EKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TG---GGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             cCCCCEEEccCCCcccC-h-hh---cccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            67899999999999975 4 44   5589999999999999974 4  88999999999999999964 4  88999999


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN  184 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  184 (433)
                      +|++++|.+++. +  +..+++|++|++++|.+.+ ++  + ..+++|++|++++|...+.+  .+..+++|+.|++++|
T Consensus       110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l-~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--V-SHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--C-TTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--c-ccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence            999999999964 4  8899999999999999954 44  3 37999999999999655554  5788999999999999


Q ss_pred             cCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476          185 NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN  264 (433)
Q Consensus       185 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  264 (433)
                      .+++ +|  +..+++|+.|+++.+....                    .   .+..+++|+.|++++|.+++ +|  +..
T Consensus       181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~--------------------~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~  231 (457)
T 3bz5_A          181 KITE-LD--VSQNKLLNRLNCDTNNITK--------------------L---DLNQNIQLTFLDCSSNKLTE-ID--VTP  231 (457)
T ss_dssp             CCCC-CC--CTTCTTCCEEECCSSCCSC--------------------C---CCTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred             ccce-ec--cccCCCCCEEECcCCcCCe--------------------e---ccccCCCCCEEECcCCcccc-cC--ccc
Confidence            9985 55  7889999999988775211                    0   14457889999999999997 55  788


Q ss_pred             CccCceEeCcCcccccCCCcccCCCC-------CCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcc
Q 042476          265 LEGLQTLNLSHNFFVGKIPENIGNMR-------SIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG  328 (433)
Q Consensus       265 l~~L~~L~Ls~n~l~~~~~~~l~~l~-------~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  328 (433)
                      +++|+.|++++|++++..+..+..+.       +|+.|++++|.+.+.+|  +..+++|+.|++++|+..+
T Consensus       232 l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~  300 (457)
T 3bz5_A          232 LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY  300 (457)
T ss_dssp             CTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred             cCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence            99999999999999876554443332       33444444444433333  2334444444444444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=3.6e-29  Score=236.79  Aligned_cols=276  Identities=18%  Similarity=0.180  Sum_probs=216.8

Q ss_pred             EeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEE
Q 042476            3 NLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVL   82 (433)
Q Consensus         3 ~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (433)
                      |.++|.++ .+|..    +   .++|++|++++|++++..+..+   .++++|++|++++|.+++..+..|.++++|++|
T Consensus        37 ~~~~~~l~-~iP~~----~---~~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           37 KGSSGSLN-SIPSG----L---TEAVKSLDLSNNRITYISNSDL---QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECCSTTCS-SCCTT----C---CTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             eCCCCCcc-ccccc----c---cccCcEEECCCCcCcccCHHHh---ccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            55666666 33421    1   4589999999999998766666   569999999999999998888999999999999


Q ss_pred             EccCCcCcccCCcccCCCCCcCEEEccCCcccccCC-ccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc
Q 042476           83 NLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP-VSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK  161 (433)
Q Consensus        83 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  161 (433)
                      ++++|.+++..+..|.++++|++|++++|.+....+ ..+..+++|++|++++|...+.++...+..+++|++|++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            999999996555569999999999999999996544 4789999999999999953355655555589999999999999


Q ss_pred             ccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhc
Q 042476          162 FNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSIL  241 (433)
Q Consensus       162 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (433)
                      +.+..|..+..+++|++|++++|.+....+..+..+++|+.|+++.+........                 ........
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-----------------~l~~~~~~  248 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS-----------------ELSTGETN  248 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------CC
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc-----------------cccccccc
Confidence            9988899999999999999999998633333345688999999887752211000                 00011224


Q ss_pred             cceeEEEcccCcccc----cCCccccCCccCceEeCcCcccccCCCcc-cCCCCCCCEEeCcCCcCCCCCC
Q 042476          242 NLVRSIDISKNNFSG----EIPMQLTNLEGLQTLNLSHNFFVGKIPEN-IGNMRSIESLDFSTNRLFGRIP  307 (433)
Q Consensus       242 ~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~  307 (433)
                      ..++.++++++.+.+    .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|.+++..|
T Consensus       249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            557778888887764    36777889999999999999998 55554 6899999999999999976544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=2.4e-27  Score=231.11  Aligned_cols=137  Identities=25%  Similarity=0.363  Sum_probs=68.5

Q ss_pred             CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476           53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI  132 (433)
Q Consensus        53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  132 (433)
                      ++|++|++++|++++ +| .|.++++|++|++++|++++ +|..+   ++|++|++++|.+++ +| .++.+++|++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            355555555555553 34 35555555555555555552 33322   355555555555553 33 3555555555555


Q ss_pred             cCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccc
Q 042476          133 GENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQ  208 (433)
Q Consensus       133 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~  208 (433)
                      ++|.+. .+|..    .++|++|++++|.+. .+| .+..+++|++|++++|.++ .+|..   +++|+.|+++.+
T Consensus       203 ~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N  267 (454)
T 1jl5_A          203 DNNSLK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDN  267 (454)
T ss_dssp             CSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSS
T ss_pred             CCCcCC-cCCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCC
Confidence            555552 23321    235555555555555 344 2555555666666655555 23332   244555555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=2.8e-28  Score=223.67  Aligned_cols=245  Identities=18%  Similarity=0.144  Sum_probs=204.6

Q ss_pred             cEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCc
Q 042476           56 ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN  135 (433)
Q Consensus        56 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  135 (433)
                      +.++.+++.++ .+|..+  .++|++|++++|.+....+..|.++++|++|++++|.+++..|..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            67888888887 456544  468999999999999877788999999999999999999888999999999999999999


Q ss_pred             cccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccccc
Q 042476          136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYF  215 (433)
Q Consensus       136 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~  215 (433)
                      .....++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..                   
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------  151 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-------------------  151 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-------------------
Confidence            8325664444558999999999999999877888999999999999999998544444443                   


Q ss_pred             ccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEE
Q 042476          216 VTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESL  295 (433)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  295 (433)
                                               +++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|
T Consensus       152 -------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  206 (285)
T 1ozn_A          152 -------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (285)
T ss_dssp             -------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             -------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence                                     4458889999999987777779999999999999999998889999999999999


Q ss_pred             eCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC
Q 042476          296 DFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN  347 (433)
Q Consensus       296 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n  347 (433)
                      ++++|.+++..+..+..+++|+.|++++|++.+..+..+.+..++......+
T Consensus       207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~  258 (285)
T 1ozn_A          207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS  258 (285)
T ss_dssp             ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEEC
T ss_pred             eCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccC
Confidence            9999999987777899999999999999999987665433333333333333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=2e-26  Score=224.59  Aligned_cols=282  Identities=24%  Similarity=0.281  Sum_probs=191.3

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +++|++|++++|.+++ +|..      .++|++|++++|++++ ++..   .++|++|++++|.+++ +| +|+++++|+
T Consensus        90 ~~~L~~L~l~~n~l~~-lp~~------~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~  156 (454)
T 1jl5_A           90 PPHLESLVASCNSLTE-LPEL------PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLK  156 (454)
T ss_dssp             CTTCSEEECCSSCCSS-CCCC------CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred             cCCCCEEEccCCcCCc-cccc------cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCC
Confidence            5688999999998887 4432      5789999999998875 3321   2689999999999985 77 689999999


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN  184 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  184 (433)
                      +|++++|.+++ +|..   ..+|++|++++|.+. .+| .+ ..+++|++|++++|.+.+ +|...   ++|++|++++|
T Consensus       157 ~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~-~~-~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n  225 (454)
T 1jl5_A          157 IIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELP-EL-QNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNN  225 (454)
T ss_dssp             EEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCC-CC-TTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSS
T ss_pred             EEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCc-cc-cCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCC
Confidence            99999999885 5543   358999999999985 466 34 379999999999999885 44332   58999999999


Q ss_pred             cCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476          185 NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN  264 (433)
Q Consensus       185 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  264 (433)
                      .+. .+|. +..+++|+.|+++.+......... .......+..   .........+++|+.|++++|.+++. |..   
T Consensus       226 ~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~~-~~L~~L~l~~---N~l~~l~~~~~~L~~L~ls~N~l~~l-~~~---  295 (454)
T 1jl5_A          226 ILE-ELPE-LQNLPFLTTIYADNNLLKTLPDLP-PSLEALNVRD---NYLTDLPELPQSLTFLDVSENIFSGL-SEL---  295 (454)
T ss_dssp             CCS-SCCC-CTTCTTCCEEECCSSCCSSCCSCC-TTCCEEECCS---SCCSCCCCCCTTCCEEECCSSCCSEE-SCC---
T ss_pred             cCC-cccc-cCCCCCCCEEECCCCcCCcccccc-cccCEEECCC---CcccccCcccCcCCEEECcCCccCcc-cCc---
Confidence            998 7774 889999999998887532100000 0000000000   00011111235667777777766642 111   


Q ss_pred             CccCceEeCcCcccccCCCcccCCC-CCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCccc
Q 042476          265 LEGLQTLNLSHNFFVGKIPENIGNM-RSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASC  343 (433)
Q Consensus       265 l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~  343 (433)
                      .++|+.|++++|++++ ++    .+ ++|+.|++++|++++ +|..   +++|+.|++++|++++ +|.  .++.++.++
T Consensus       296 ~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~--~l~~L~~L~  363 (454)
T 1jl5_A          296 PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE--LPQNLKQLH  363 (454)
T ss_dssp             CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEE
T ss_pred             CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc--hhhhccEEE
Confidence            1456666666666653 22    22 478888888888765 4543   4678888888888874 555  467778888


Q ss_pred             ccCCcCCCC
Q 042476          344 FSGNDLCGA  352 (433)
Q Consensus       344 ~~~n~l~~~  352 (433)
                      +++|.+.+.
T Consensus       364 L~~N~l~~l  372 (454)
T 1jl5_A          364 VEYNPLREF  372 (454)
T ss_dssp             CCSSCCSSC
T ss_pred             CCCCCCCcC
Confidence            888877764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=9.9e-29  Score=230.09  Aligned_cols=272  Identities=18%  Similarity=0.207  Sum_probs=198.8

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      +++.++++.+.+.......+   ..+++|++|++++|.+++..|..|.++++|++|++++|.+.+..+  +..+++|++|
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLR---QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHH---TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             ceeEeeccccchhhhHHHHh---ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            46677777777765444443   347789999999999988777888899999999999999886544  8889999999


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL  186 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  186 (433)
                      ++++|.+++..     ..++|++|++++|.+.+ ++..   .+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           86 DLNNNYVQELL-----VGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             ECCSSEEEEEE-----ECTTCCEEECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             ECcCCcccccc-----CCCCcCEEECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence            99999887532     34889999999998853 3322   367899999999998877777888889999999999888


Q ss_pred             cccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCc
Q 042476          187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE  266 (433)
Q Consensus       187 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~  266 (433)
                      .+..+..+.                                           ..+++|++|++++|.+++..+  ...++
T Consensus       157 ~~~~~~~~~-------------------------------------------~~l~~L~~L~L~~N~l~~~~~--~~~l~  191 (317)
T 3o53_A          157 DTVNFAELA-------------------------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFA  191 (317)
T ss_dssp             CEEEGGGGG-------------------------------------------GGTTTCCEEECTTSCCCEEEC--CCCCT
T ss_pred             CcccHHHHh-------------------------------------------hccCcCCEEECCCCcCccccc--ccccc
Confidence            754433321                                           124557788888888875522  23478


Q ss_pred             cCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcc-cCCCC-cccCccCcccc
Q 042476          267 GLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG-QIPSS-TQLQSFGASCF  344 (433)
Q Consensus       267 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~-~~~~~l~~~~~  344 (433)
                      +|++|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++ .+|.. ..++.++.+++
T Consensus       192 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l  269 (317)
T 3o53_A          192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (317)
T ss_dssp             TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred             cCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence            88888888888874 4445778888888888888887 467778888888888888888883 22221 33455566666


Q ss_pred             cCC-cCCCCCCCCCCC
Q 042476          345 SGN-DLCGAPLPDCTE  359 (433)
Q Consensus       345 ~~n-~l~~~~~~~c~~  359 (433)
                      .++ .+.|.....|..
T Consensus       270 ~~~~~l~~~~~~~~~~  285 (317)
T 3o53_A          270 QTVKKLTGQNEEECTV  285 (317)
T ss_dssp             HHHHHHHSSSSCCCSS
T ss_pred             CCchhccCCchhccCC
Confidence            654 555554445543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=3.5e-29  Score=232.58  Aligned_cols=248  Identities=23%  Similarity=0.246  Sum_probs=137.8

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCc-CcCCcccC-------CCCCCCEEEccCCcCcccCCccc
Q 042476           26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFS-GDIPDCWM-------NWPHLQVLNLDDNYFTGNLPISI   97 (433)
Q Consensus        26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~p~~~   97 (433)
                      ++|+.|++++|.+  .+|..++     ..|+.|++++|.+. ..+|..+.       ++++|++|++++|.+++..|..+
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFT-----DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHH-----HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             CCceeEeeccccc--ccHHHHH-----HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3455666666666  4444442     22556666666553 23443333       45566666666666665555544


Q ss_pred             --CCCCCcCEEEccCCcccccCCccccCC-----CCCcEEECcCccccccCChhhhhcCCCccEEEeeCcccccc--CCc
Q 042476           98 --GTLSSLRSLHLRNNRLAGIFPVSLKNC-----SSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGS--LPV  168 (433)
Q Consensus        98 --~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~  168 (433)
                        ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..+. .+++|++|++++|.+.+.  .+.
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHH
Confidence              5566666666666666544 4444444     5556666665555322223332 455555555555554432  122


Q ss_pred             cc--cCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeE
Q 042476          169 QL--CHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRS  246 (433)
Q Consensus       169 ~l--~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  246 (433)
                      .+  ..+++|++|++++|.+++ ++.                                        .....+..+++|++
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~-~~~----------------------------------------~~~~~~~~l~~L~~  232 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMET-PSG----------------------------------------VCSALAAARVQLQG  232 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCC-HHH----------------------------------------HHHHHHHTTCCCSE
T ss_pred             HHHhccCCCCCEEECCCCcCcc-hHH----------------------------------------HHHHHHhcCCCCCE
Confidence            22  455555555555555541 000                                        00011122456777


Q ss_pred             EEcccCcccccCC-ccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCc
Q 042476          247 IDISKNNFSGEIP-MQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEND  325 (433)
Q Consensus       247 L~L~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  325 (433)
                      |++++|.+++..| ..+..+++|+.|+|++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.|++++|+
T Consensus       233 L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             EECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCT
T ss_pred             EECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCC
Confidence            7777777776553 34555677777777777776 5666554  6777777777777654 44 6677777777777777


Q ss_pred             Ccc
Q 042476          326 LSG  328 (433)
Q Consensus       326 l~~  328 (433)
                      +++
T Consensus       308 l~~  310 (312)
T 1wwl_A          308 FLD  310 (312)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.6e-28  Score=226.75  Aligned_cols=249  Identities=20%  Similarity=0.235  Sum_probs=200.8

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCc-ccCCcccC-------CCCCcCEEEccCCcccccCCccc--
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT-GNLPISIG-------TLSSLRSLHLRNNRLAGIFPVSL--  121 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--  121 (433)
                      .++|+.|++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       ++++|++|++++|.+++..|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            56788889999988  567665543  888999999984 45666555       78999999999999998888876  


Q ss_pred             cCCCCCcEEECcCccccccCChhhhhcC-----CCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccC--CCCc
Q 042476          122 KNCSSLISLDIGENDFFGSIPTWVGERF-----PRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTI--PRCI  194 (433)
Q Consensus       122 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--p~~~  194 (433)
                      ..+++|++|++++|.+.+. |..+. .+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..  +..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            8899999999999999655 66555 45     89999999999999877789999999999999999876432  1111


Q ss_pred             cccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccc---cCCccccCCccCceE
Q 042476          195 NNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSG---EIPMQLTNLEGLQTL  271 (433)
Q Consensus       195 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L  271 (433)
                                                                .+..+++|++|++++|.+++   .....+..+++|+.|
T Consensus       196 ------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L  233 (312)
T 1wwl_A          196 ------------------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL  233 (312)
T ss_dssp             ------------------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred             ------------------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence                                                      01225668999999999973   222344678999999


Q ss_pred             eCcCcccccCCC-cccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCC
Q 042476          272 NLSHNFFVGKIP-ENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLC  350 (433)
Q Consensus       272 ~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~  350 (433)
                      +|++|++++..| ..+..+++|+.|++++|+++ .+|..+.  ++|+.|++++|++++. |....++.++.+++++|.+.
T Consensus       234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred             ECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence            999999998775 55677899999999999998 7777665  8999999999999976 66778899999999999887


Q ss_pred             CC
Q 042476          351 GA  352 (433)
Q Consensus       351 ~~  352 (433)
                      +.
T Consensus       310 ~~  311 (312)
T 1wwl_A          310 DS  311 (312)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=9e-28  Score=223.62  Aligned_cols=247  Identities=19%  Similarity=0.228  Sum_probs=205.1

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +++|++|++++|.+++..+..+   ..+++|++|++++|.+++..+  |..+++|++|++++|.+++. +    ..++|+
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~  102 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADL---APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIE  102 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHH---TTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCC
T ss_pred             CCCCCEEECcCCccCcCCHHHh---hCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcC
Confidence            5689999999999998877777   559999999999999986654  88999999999999999853 3    348999


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccc-cCCCCcCEEEccC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQL-CHLTFLRILDVAH  183 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~  183 (433)
                      +|++++|.+.+..+.   .+++|++|++++|.+.+ ++...+..+++|++|++++|.+.+..+..+ ..+++|++|++++
T Consensus       103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             EEECCCCccCCcCcc---ccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            999999999876544   46889999999999954 444334479999999999999997766666 4789999999999


Q ss_pred             CcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcccc
Q 042476          184 NNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLT  263 (433)
Q Consensus       184 n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~  263 (433)
                      |.+++. +...                                             .+++|++|++++|.+++ +|..+.
T Consensus       179 N~l~~~-~~~~---------------------------------------------~l~~L~~L~Ls~N~l~~-l~~~~~  211 (317)
T 3o53_A          179 NFIYDV-KGQV---------------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQ  211 (317)
T ss_dssp             SCCCEE-ECCC---------------------------------------------CCTTCCEEECCSSCCCE-ECGGGG
T ss_pred             CcCccc-cccc---------------------------------------------ccccCCEEECCCCcCCc-chhhhc
Confidence            998743 2110                                             14568999999999985 455588


Q ss_pred             CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC-CCCCccccCCCCCCeeeCc-CCcCcccCCCC
Q 042476          264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF-GRIPQSMSSLSFLNHLNLS-ENDLSGQIPSS  333 (433)
Q Consensus       264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~-~n~l~~~~p~~  333 (433)
                      .+++|+.|+|++|+++ .+|..+..+++|+.|++++|.++ +.+|..+..+++|+.++++ .+.+++..|..
T Consensus       212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            9999999999999998 57888999999999999999998 6788889999999999999 44566655543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=5.1e-30  Score=251.56  Aligned_cols=342  Identities=17%  Similarity=0.136  Sum_probs=163.5

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccC----CccccCCCCCCCccEEEcCCCcCcCcCCccc-CC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSI----IHLICNGDNKSVIISLKLSKNYFSGDIPDCW-MN   75 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~   75 (433)
                      +|||++|++++....-....    +++|++|++++|.+++..    +..+   ..+++|++|++++|.+....+..+ ..
T Consensus         7 ~L~Ls~~~l~~~~~~~~~~~----~~~L~~L~L~~~~l~~~~~~~l~~~l---~~~~~L~~L~Ls~n~l~~~~~~~l~~~   79 (461)
T 1z7x_W            7 SLDIQCEELSDARWAELLPL----LQQCQVVRLDDCGLTEARCKDISSAL---RVNPALAELNLRSNELGDVGVHCVLQG   79 (461)
T ss_dssp             EEEEESCCCCHHHHHHHHHH----HTTCSEEEEESSCCCHHHHHHHHHHH---HTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             ehhhhhcccCchhHHHHHhh----cCCccEEEccCCCCCHHHHHHHHHHH---HhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence            36777777764321100011    445666666666665432    2222   335666666666666554322221 12


Q ss_pred             CC----CCCEEEccCCcCcc----cCCcccCCCCCcCEEEccCCcccccCCccc-----cCCCCCcEEECcCccccccC-
Q 042476           76 WP----HLQVLNLDDNYFTG----NLPISIGTLSSLRSLHLRNNRLAGIFPVSL-----KNCSSLISLDIGENDFFGSI-  141 (433)
Q Consensus        76 l~----~L~~L~L~~n~i~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~-  141 (433)
                      ++    +|++|++++|.+..    .++..+..+++|++|++++|.+....+..+     ...++|++|++++|.+.+.. 
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence            32    46666666666653    335566666666666666666553322221     12345666666666554322 


Q ss_pred             ---ChhhhhcCCCccEEEeeCccccccCCcccc-----CCCCcCEEEccCCcCccc----CCCCcccccccccccccccc
Q 042476          142 ---PTWVGERFPRLLILNLRSNKFNGSLPVQLC-----HLTFLRILDVAHNNLSGT----IPRCINNFTAMATINSSNQK  209 (433)
Q Consensus       142 ---~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~~~  209 (433)
                         +..+. .+++|++|++++|.+....+..+.     ..++|++|++++|.+++.    ++..+..+++|+.|+++.+.
T Consensus       160 ~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          160 EPLASVLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence               22222 456666666666665533222221     244566666666665532    34444555666666655543


Q ss_pred             cccccc------cc--CCceeeecceee-ec----cceeehhhhccceeEEEcccCcccccCCcccc-----CCccCceE
Q 042476          210 NAIYYF------VT--RGNIVFEDASVV-TK----GLLVEYNSILNLVRSIDISKNNFSGEIPMQLT-----NLEGLQTL  271 (433)
Q Consensus       210 ~~~~~~------~~--~~~~~~~~~~~~-~~----~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L  271 (433)
                      ......      ..  ........+... ..    ......+..+++|++|++++|.++...+..+.     ..++|++|
T Consensus       239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence            111000      00  000000000000 00    00122233455666666666665433222221     12466666


Q ss_pred             eCcCcccccC----CCcccCCCCCCCEEeCcCCcCCCCCCccccC-----CCCCCeeeCcCCcCcc----cCCCC-cccC
Q 042476          272 NLSHNFFVGK----IPENIGNMRSIESLDFSTNRLFGRIPQSMSS-----LSFLNHLNLSENDLSG----QIPSS-TQLQ  337 (433)
Q Consensus       272 ~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~----~~p~~-~~~~  337 (433)
                      ++++|.+++.    ++..+..+++|+.|++++|.+++..+..+..     .++|+.|++++|.+++    .+|.. ...+
T Consensus       319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  398 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  398 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence            6666666543    3344445566666666666665443332221     4566666666666653    23321 3345


Q ss_pred             ccCcccccCCcCC
Q 042476          338 SFGASCFSGNDLC  350 (433)
Q Consensus       338 ~l~~~~~~~n~l~  350 (433)
                      .++.+++++|.+.
T Consensus       399 ~L~~L~l~~N~i~  411 (461)
T 1z7x_W          399 SLRELDLSNNCLG  411 (461)
T ss_dssp             CCCEEECCSSSCC
T ss_pred             CccEEECCCCCCC
Confidence            5666666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=3.2e-25  Score=222.72  Aligned_cols=259  Identities=25%  Similarity=0.325  Sum_probs=206.9

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +||+++|.++ .+|..    +   .++|++|++++|.+++ +|.      .+++|++|++++|+++. +|.   .+++|+
T Consensus        44 ~L~ls~n~L~-~lp~~----l---~~~L~~L~L~~N~l~~-lp~------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~  104 (622)
T 3g06_A           44 VLNVGESGLT-TLPDC----L---PAHITTLVIPDNNLTS-LPA------LPPELRTLEVSGNQLTS-LPV---LPPGLL  104 (622)
T ss_dssp             EEECCSSCCS-CCCSC----C---CTTCSEEEECSCCCSC-CCC------CCTTCCEEEECSCCCSC-CCC---CCTTCC
T ss_pred             EEEecCCCcC-ccChh----h---CCCCcEEEecCCCCCC-CCC------cCCCCCEEEcCCCcCCc-CCC---CCCCCC
Confidence            3789999998 65642    1   2589999999999984 443      27899999999999984 555   678999


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN  160 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  160 (433)
                      +|++++|.+++ +|.   .+++|++|++++|.++. +|..   +++|++|++++|.+. .+|.    .+++|+.|++++|
T Consensus       105 ~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N  171 (622)
T 3g06_A          105 ELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNN  171 (622)
T ss_dssp             EEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSS
T ss_pred             EEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCC
Confidence            99999999984 554   57899999999999985 4543   589999999999984 4553    3578999999999


Q ss_pred             cccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhh
Q 042476          161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI  240 (433)
Q Consensus       161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (433)
                      .++. +|   ..+++|+.|++++|.++ .+|..   +++|+.|+++++....                     +   ...
T Consensus       172 ~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~~---------------------l---~~~  219 (622)
T 3g06_A          172 QLTS-LP---MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS---------------------L---PAL  219 (622)
T ss_dssp             CCSC-CC---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS---------------------C---CCC
T ss_pred             CCCC-Cc---ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCcccc---------------------c---CCC
Confidence            9984 55   45789999999999998 45543   3677777777664110                     0   112


Q ss_pred             ccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeee
Q 042476          241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLN  320 (433)
Q Consensus       241 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  320 (433)
                      +++|+.|++++|.+++ +|   ..+++|+.|+|++|+++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus       220 ~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  290 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred             CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence            4679999999999985 55   45689999999999998 5665   5689999999999998 7788899999999999


Q ss_pred             CcCCcCcccCCC
Q 042476          321 LSENDLSGQIPS  332 (433)
Q Consensus       321 L~~n~l~~~~p~  332 (433)
                      +++|++++.+|.
T Consensus       291 L~~N~l~~~~~~  302 (622)
T 3g06_A          291 LEGNPLSERTLQ  302 (622)
T ss_dssp             CCSCCCCHHHHH
T ss_pred             ecCCCCCCcCHH
Confidence            999999986664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=5e-27  Score=231.00  Aligned_cols=218  Identities=20%  Similarity=0.185  Sum_probs=162.0

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      +++|+.|+|++|.+++..|..|.++++|++|+|++|.+++..|  |..+++|++|++++|.+++..     ..++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence            5578888888888887777788888888888888888876554  778888888888888877533     237888888


Q ss_pred             CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc
Q 042476          132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA  211 (433)
Q Consensus       132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~  211 (433)
                      +++|.+.+.. ..   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+.                
T Consensus       106 L~~N~l~~~~-~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----------------  165 (487)
T 3oja_A          106 AANNNISRVS-CS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----------------  165 (487)
T ss_dssp             CCSSCCCCEE-EC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG----------------
T ss_pred             CcCCcCCCCC-cc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh----------------
Confidence            8888874332 22   367888888888888877777888888888888888888765554332                


Q ss_pred             ccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCC
Q 042476          212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRS  291 (433)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  291 (433)
                                                 ..+++|+.|++++|.+++..+  ...+++|+.|+|++|.+++. |..+..+++
T Consensus       166 ---------------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~  215 (487)
T 3oja_A          166 ---------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAG  215 (487)
T ss_dssp             ---------------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTT
T ss_pred             ---------------------------hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCC
Confidence                                       113457777777777775532  33578888888888888754 444777888


Q ss_pred             CCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCc
Q 042476          292 IESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS  327 (433)
Q Consensus       292 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  327 (433)
                      |+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus       216 L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          216 VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            8888888888874 6666777888888888888887

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1.8e-25  Score=203.91  Aligned_cols=211  Identities=24%  Similarity=0.203  Sum_probs=124.1

Q ss_pred             CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476           53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI  132 (433)
Q Consensus        53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  132 (433)
                      +++++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666666666665555555556666666666666665444455556666666666666655555555555555555555


Q ss_pred             cCccccccCChhhhhcCCCccEEEeeCcccccc-CCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc
Q 042476          133 GENDFFGSIPTWVGERFPRLLILNLRSNKFNGS-LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA  211 (433)
Q Consensus       133 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~  211 (433)
                      ++|.+. .++...+..+++|++|++++|.+... +|..+..+++|++|++++|                           
T Consensus       108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N---------------------------  159 (276)
T 2z62_A          108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN---------------------------  159 (276)
T ss_dssp             TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS---------------------------
T ss_pred             CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC---------------------------
Confidence            555552 22221122445555555555544431 3444444444444444444                           


Q ss_pred             ccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCc----eEeCcCcccccCCCcccC
Q 042476          212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQ----TLNLSHNFFVGKIPENIG  287 (433)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~l~  287 (433)
                                                               .+++..+..+..+++|+    +|++++|++++..+..+.
T Consensus       160 -----------------------------------------~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~  198 (276)
T 2z62_A          160 -----------------------------------------KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK  198 (276)
T ss_dssp             -----------------------------------------CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred             -----------------------------------------CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC
Confidence                                                     44433333444444444    677888887755444443


Q ss_pred             CCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC
Q 042476          288 NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS  333 (433)
Q Consensus       288 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~  333 (433)
                       ..+|+.|++++|++++..+..+..+++|+.|++++|+++|.+|..
T Consensus       199 -~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          199 -EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             -SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             -CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence             447888888888887666667788888888899988888877755

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=6.3e-27  Score=230.31  Aligned_cols=236  Identities=19%  Similarity=0.207  Sum_probs=198.4

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +++|++|++++|.+++..|..+   ..+++|++|+|++|.+++..|  |..+++|++|+|++|.+++..+     .++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~  102 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADL---APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIE  102 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGG---TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred             CCCccEEEeeCCcCCCCCHHHH---hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence            5689999999999999888777   569999999999999987665  8899999999999999985332     38999


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCcccc-CCCCcCEEEccC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLC-HLTFLRILDVAH  183 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~  183 (433)
                      +|++++|.+.+..+.   .+++|+.|++++|.+.+..|..+. .+++|++|++++|.+++..|..+. .+++|+.|++++
T Consensus       103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            999999999976554   468899999999999665555555 799999999999999987787776 799999999999


Q ss_pred             CcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcccc
Q 042476          184 NNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLT  263 (433)
Q Consensus       184 n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~  263 (433)
                      |.+++. |.. .                                            .++.|+.|++++|.+++. |..+.
T Consensus       179 N~l~~~-~~~-~--------------------------------------------~l~~L~~L~Ls~N~l~~~-~~~~~  211 (487)
T 3oja_A          179 NFIYDV-KGQ-V--------------------------------------------VFAKLKTLDLSSNKLAFM-GPEFQ  211 (487)
T ss_dssp             SCCCEE-ECC-C--------------------------------------------CCTTCCEEECCSSCCCEE-CGGGG
T ss_pred             Cccccc-ccc-c--------------------------------------------cCCCCCEEECCCCCCCCC-CHhHc
Confidence            998743 211 0                                            145689999999999864 44588


Q ss_pred             CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC-CCCCccccCCCCCCeeeCc
Q 042476          264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF-GRIPQSMSSLSFLNHLNLS  322 (433)
Q Consensus       264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~  322 (433)
                      .+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       212 ~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          212 SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            99999999999999984 7888899999999999999997 5677788888888887776

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=4.5e-29  Score=244.83  Aligned_cols=323  Identities=17%  Similarity=0.131  Sum_probs=209.8

Q ss_pred             CEEeecccCccc----CCCCCCCCCCCCCCCccEEEccCCcccccCCccccCC-C-CCCCccEEEcCCCcCcC----cCC
Q 042476            1 ELNLSNNQIYGV----IPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG-D-NKSVIISLKLSKNYFSG----DIP   70 (433)
Q Consensus         1 ~L~ls~n~l~~~----~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~-~-~~~~L~~L~L~~n~l~~----~~~   70 (433)
                      +|+|++|.+++.    +++.. ..    +++|++|++++|.+++..+..++.. . ..++|++|++++|.+..    .++
T Consensus        32 ~L~L~~~~l~~~~~~~l~~~l-~~----~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           32 VVRLDDCGLTEARCKDISSAL-RV----NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             EEEEESSCCCHHHHHHHHHHH-HT----CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             EEEccCCCCCHHHHHHHHHHH-Hh----CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            478899988853    22211 11    4679999999998877555444322 1 12268899999988874    457


Q ss_pred             cccCCCCCCCEEEccCCcCcccCCccc-----CCCCCcCEEEccCCccccc----CCccccCCCCCcEEECcCccccccC
Q 042476           71 DCWMNWPHLQVLNLDDNYFTGNLPISI-----GTLSSLRSLHLRNNRLAGI----FPVSLKNCSSLISLDIGENDFFGSI  141 (433)
Q Consensus        71 ~~~~~l~~L~~L~L~~n~i~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~  141 (433)
                      ..+..+++|++|++++|.+....+..+     ...++|++|++++|.++..    ++..+..+++|++|++++|.+.+..
T Consensus       107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  186 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG  186 (461)
T ss_dssp             HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence            778888899999999888875433332     2356788888888887753    3455666788888888888774433


Q ss_pred             Chhhh----hcCCCccEEEeeCcccccc----CCccccCCCCcCEEEccCCcCcccC-----CCCccccccccccccccc
Q 042476          142 PTWVG----ERFPRLLILNLRSNKFNGS----LPVQLCHLTFLRILDVAHNNLSGTI-----PRCINNFTAMATINSSNQ  208 (433)
Q Consensus       142 ~~~~~----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~-----p~~~~~l~~L~~L~l~~~  208 (433)
                      +..+.    ...++|++|++++|.++..    ++..+..+++|++|++++|.+.+..     +..+..+++|+.|+++.|
T Consensus       187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            33332    2355788888887777642    3555666777777777777765321     112234566777766665


Q ss_pred             ccccc------cccc-CCceeeecceee-eccc----eeeh-hhhccceeEEEcccCccccc----CCccccCCccCceE
Q 042476          209 KNAIY------YFVT-RGNIVFEDASVV-TKGL----LVEY-NSILNLVRSIDISKNNFSGE----IPMQLTNLEGLQTL  271 (433)
Q Consensus       209 ~~~~~------~~~~-~~~~~~~~~~~~-~~~~----~~~~-~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L  271 (433)
                      .....      ..+. .......++... ....    .... ....++|++|++++|.+++.    ++..+..+++|++|
T Consensus       267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  346 (461)
T 1z7x_W          267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL  346 (461)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred             CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence            42211      0000 000000000000 0000    0000 11235899999999999865    45666778999999


Q ss_pred             eCcCcccccCCCcccCC-----CCCCCEEeCcCCcCCC----CCCccccCCCCCCeeeCcCCcCcc
Q 042476          272 NLSHNFFVGKIPENIGN-----MRSIESLDFSTNRLFG----RIPQSMSSLSFLNHLNLSENDLSG  328 (433)
Q Consensus       272 ~Ls~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~  328 (433)
                      ++++|++++..+..+..     .++|+.|++++|.+++    .+|..+..+++|+.|++++|++++
T Consensus       347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            99999998665554432     6799999999999986    678888889999999999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=8.2e-25  Score=199.54  Aligned_cols=164  Identities=24%  Similarity=0.232  Sum_probs=137.1

Q ss_pred             CCCCC-CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccC
Q 042476           20 PLPYQ-PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIG   98 (433)
Q Consensus        20 ~~p~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~   98 (433)
                      .+|.. .+++++|++++|.+++..+..+   .++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.
T Consensus        21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           21 KIPDNLPFSTKNLDLSFNPLRHLGSYSF---FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             SCCSSSCTTCCEEECTTCCCCEECTTTT---TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             ccCCCCCCCccEEECCCCcccccCHhHh---ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence            34543 4579999999999998777666   5599999999999999988888999999999999999999988888999


Q ss_pred             CCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccc-cCChhhhhcCCCccEEEeeCccccccCCccccCCCCcC
Q 042476           99 TLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFG-SIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLR  177 (433)
Q Consensus        99 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  177 (433)
                      ++++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+. .+++|++|++++|.+.+..+..+..+++|+
T Consensus        98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  176 (276)
T 2z62_A           98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  176 (276)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence            99999999999999998777789999999999999999854 3577766 799999999999999866555555544444


Q ss_pred             ----EEEccCCcCc
Q 042476          178 ----ILDVAHNNLS  187 (433)
Q Consensus       178 ----~L~l~~n~~~  187 (433)
                          .|++++|.+.
T Consensus       177 ~l~l~L~ls~n~l~  190 (276)
T 2z62_A          177 LLNLSLDLSLNPMN  190 (276)
T ss_dssp             TCCEEEECCSSCCC
T ss_pred             ccceeeecCCCccc
Confidence                4555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.8e-24  Score=196.53  Aligned_cols=207  Identities=21%  Similarity=0.224  Sum_probs=127.4

Q ss_pred             CccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECc
Q 042476           54 VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIG  133 (433)
Q Consensus        54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  133 (433)
                      ..+.++++++.++ .+|..+.  +++++|++++|.+....+.+|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            3456666666665 2444332  356666666666664444456666666666666666554444444555555555555


Q ss_pred             CccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccc
Q 042476          134 ENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIY  213 (433)
Q Consensus       134 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~  213 (433)
                      +|.+ ..++...+..+++|++|++++|.+....+..+..+++                                      
T Consensus        94 ~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--------------------------------------  134 (270)
T 2o6q_A           94 DNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK--------------------------------------  134 (270)
T ss_dssp             SSCC-CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT--------------------------------------
T ss_pred             CCcC-CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC--------------------------------------
Confidence            5555 2333333334444444444444444333333333333                                      


Q ss_pred             ccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCC
Q 042476          214 YFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIE  293 (433)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  293 (433)
                                                    |++|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+
T Consensus       135 ------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  184 (270)
T 2o6q_A          135 ------------------------------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK  184 (270)
T ss_dssp             ------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ------------------------------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence                                          45555555555544445567778888888888888866666788888888


Q ss_pred             EEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC
Q 042476          294 SLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS  332 (433)
Q Consensus       294 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  332 (433)
                      .|++++|++++..+..+..+++|+.|++++|++.+..+.
T Consensus       185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             EEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            888888888876666788888899999999988877654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=6e-24  Score=213.53  Aligned_cols=259  Identities=24%  Similarity=0.294  Sum_probs=208.0

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      +++.|++++|.++ .+|..+     .++|+.|++++|.++ .+|.   .+++|++|+|++|+++ .+|.   .+++|++|
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l-----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L  106 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCL-----PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLEL  106 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCC-----CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred             CCcEEEecCCCcC-ccChhh-----CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEE
Confidence            5899999999998 566655     479999999999998 4555   5789999999999998 5665   67999999


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL  186 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  186 (433)
                      ++++|.+++. |.   .+++|+.|++++|.+. .+|..    +++|++|++++|.+++ +|.   .+++|+.|++++|.+
T Consensus       107 ~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l  173 (622)
T 3g06_A          107 SIFSNPLTHL-PA---LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQL  173 (622)
T ss_dssp             EECSCCCCCC-CC---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred             ECcCCcCCCC-CC---CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCC
Confidence            9999999854 44   5789999999999984 56653    5899999999999984 443   356899999999999


Q ss_pred             cccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCc
Q 042476          187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE  266 (433)
Q Consensus       187 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~  266 (433)
                      + .+|   ..+++|+.|+++.|....                        ....+++|+.|++++|.++ .+|.   .++
T Consensus       174 ~-~l~---~~~~~L~~L~Ls~N~l~~------------------------l~~~~~~L~~L~L~~N~l~-~l~~---~~~  221 (622)
T 3g06_A          174 T-SLP---MLPSGLQELSVSDNQLAS------------------------LPTLPSELYKLWAYNNRLT-SLPA---LPS  221 (622)
T ss_dssp             S-CCC---CCCTTCCEEECCSSCCSC------------------------CCCCCTTCCEEECCSSCCS-SCCC---CCT
T ss_pred             C-CCc---ccCCCCcEEECCCCCCCC------------------------CCCccchhhEEECcCCccc-ccCC---CCC
Confidence            8 466   456788889888775110                        0112467999999999998 4453   348


Q ss_pred             cCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccC
Q 042476          267 GLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSG  346 (433)
Q Consensus       267 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~  346 (433)
                      +|+.|+|++|++++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|+++..++....++.++.+++++
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCS
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecC
Confidence            89999999999985 55   45689999999999997 4555   56899999999999995433446778899999999


Q ss_pred             CcCCCC
Q 042476          347 NDLCGA  352 (433)
Q Consensus       347 n~l~~~  352 (433)
                      |.+.+.
T Consensus       294 N~l~~~  299 (622)
T 3g06_A          294 NPLSER  299 (622)
T ss_dssp             CCCCHH
T ss_pred             CCCCCc
Confidence            988753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.4e-23  Score=190.72  Aligned_cols=154  Identities=23%  Similarity=0.243  Sum_probs=133.2

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      +.++++++++.++. +|..+     .+++++|++++|+++...+..|.++++|++|++++|.++...+..|.++++|++|
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNI-----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCC-----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCCEEEccCCCCCc-cCCCC-----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            57899999999985 56555     4689999999999998888899999999999999999996666678999999999


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL  186 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  186 (433)
                      ++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence            99999999888788899999999999999994 55555555899999999999999866666678888888888887776


Q ss_pred             c
Q 042476          187 S  187 (433)
Q Consensus       187 ~  187 (433)
                      +
T Consensus       170 ~  170 (270)
T 2o6q_A          170 K  170 (270)
T ss_dssp             S
T ss_pred             c
Confidence            6

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=8.3e-24  Score=193.93  Aligned_cols=204  Identities=19%  Similarity=0.245  Sum_probs=115.4

Q ss_pred             CCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEE
Q 042476           51 NKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISL  130 (433)
Q Consensus        51 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  130 (433)
                      +++++++++++++.++ .+|..+.  +.++.|++++|.+.+..+..|.++++|++|++++|.+++..+.  ..+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            3556666666666665 2333332  4566666666666655555566666666666666665533221  344555555


Q ss_pred             ECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccc
Q 042476          131 DIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKN  210 (433)
Q Consensus       131 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~  210 (433)
                      ++++|.+                         . .+|..+..+++|+.|++++|++++..+..|..+             
T Consensus        83 ~Ls~N~l-------------------------~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l-------------  123 (290)
T 1p9a_G           83 DLSHNQL-------------------------Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-------------  123 (290)
T ss_dssp             ECCSSCC-------------------------S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-------------
T ss_pred             ECCCCcC-------------------------C-cCchhhccCCCCCEEECCCCcCcccCHHHHcCC-------------
Confidence            5555544                         4 334444455555555555555543222323222             


Q ss_pred             cccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCC
Q 042476          211 AIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMR  290 (433)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  290 (433)
                                                     ++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..+..++
T Consensus       124 -------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  172 (290)
T 1p9a_G          124 -------------------------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE  172 (290)
T ss_dssp             -------------------------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred             -------------------------------CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence                                           2245555555555544455556667777777777777655555566677


Q ss_pred             CCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccC
Q 042476          291 SIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQI  330 (433)
Q Consensus       291 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  330 (433)
                      +|+.|++++|+++ .+|..+....+|+.+++++|++.+..
T Consensus       173 ~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            7777777777775 55555666667777777777776543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=1.3e-24  Score=197.59  Aligned_cols=203  Identities=22%  Similarity=0.219  Sum_probs=128.5

Q ss_pred             CCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccE
Q 042476           75 NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLI  154 (433)
Q Consensus        75 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  154 (433)
                      .+++|+.|++++|.+.. . ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+. .++...+..+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred             cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCE
Confidence            44555555555555442 1 2344555555555555555432  24555555555555555553 333333335566666


Q ss_pred             EEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccce
Q 042476          155 LNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLL  234 (433)
Q Consensus       155 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (433)
                      |++++|.+.+..+..+..+++|++|++++|.+++..+..+..                                      
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------------------------  155 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------------------------------------  155 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------------------------
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------------------------------------
Confidence            666666665444555666666666666666665333332322                                      


Q ss_pred             eehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCC
Q 042476          235 VEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLS  314 (433)
Q Consensus       235 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  314 (433)
                            +++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+       .++
T Consensus       156 ------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~  222 (272)
T 3rfs_A          156 ------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCP  222 (272)
T ss_dssp             ------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTT
T ss_pred             ------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCc
Confidence                  3336666677777766666667788889999999999887777778888999999999998764       355


Q ss_pred             CCCeeeCcCCcCcccCCCC
Q 042476          315 FLNHLNLSENDLSGQIPSS  333 (433)
Q Consensus       315 ~L~~L~L~~n~l~~~~p~~  333 (433)
                      +|+.++++.|.++|.+|..
T Consensus       223 ~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          223 GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTHHHHHHHHHTGGGBBCT
T ss_pred             HHHHHHHHHHhCCCcccCc
Confidence            7888999999999988864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.8e-23  Score=190.12  Aligned_cols=228  Identities=20%  Similarity=0.211  Sum_probs=172.2

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      .+..+++..+.+.+....     ..+++|+.|++++|.+...  ..+..+++|++|++++|.+.+ + ..+.++++|++|
T Consensus        20 ~l~~l~l~~~~~~~~~~~-----~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L   90 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQ-----NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYL   90 (272)
T ss_dssp             HHHHHHHTCSCTTSEECH-----HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEE
T ss_pred             HHHHHHhcCccccccccc-----ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEE
Confidence            345556666666544332     2377888888888887632  347778888888888888874 3 477888888888


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL  186 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  186 (433)
                      ++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A           91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence            88888888777777888888888888888884 55555444788888888888888866666778888899999998888


Q ss_pred             cccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCc
Q 042476          187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE  266 (433)
Q Consensus       187 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~  266 (433)
                      ++..+..+..                                            +++|+.|++++|.+++..+..+..++
T Consensus       170 ~~~~~~~~~~--------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~  205 (272)
T 3rfs_A          170 QSLPEGVFDK--------------------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLT  205 (272)
T ss_dssp             CCCCTTTTTT--------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             CccCHHHhcC--------------------------------------------CccCCEEECCCCcCCccCHHHHhCCc
Confidence            7544443433                                            34477888888888877777788889


Q ss_pred             cCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCC
Q 042476          267 GLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSF  315 (433)
Q Consensus       267 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  315 (433)
                      +|+.|++++|.+.       +.+++|+.|+++.|.+++.+|..++.++.
T Consensus       206 ~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          206 SLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            9999999999876       34567888999999999888887766543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=9e-25  Score=202.68  Aligned_cols=230  Identities=22%  Similarity=0.233  Sum_probs=169.0

Q ss_pred             CCCccEEEcCCCcCcCcC-Cc--ccCCCCCCCEEEccCCcCcccCCccc--CCCCCcCEEEccCCcccccCC----cccc
Q 042476           52 KSVIISLKLSKNYFSGDI-PD--CWMNWPHLQVLNLDDNYFTGNLPISI--GTLSSLRSLHLRNNRLAGIFP----VSLK  122 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~-~~--~~~~l~~L~~L~L~~n~i~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~  122 (433)
                      ...++.+.+.++.+.... ..  .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            345677888777665211 10  11234668999999999888888877  888899999999998886544    3345


Q ss_pred             CCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcccccc--C--CccccCCCCcCEEEccCCcCcccCCCCccccc
Q 042476          123 NCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGS--L--PVQLCHLTFLRILDVAHNNLSGTIPRCINNFT  198 (433)
Q Consensus       123 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~  198 (433)
                      .+++|++|++++|.+. .++...+..+++|++|++++|++.+.  +  +..+..+++|++|++++|.++ .++...    
T Consensus       143 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~----  216 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVC----  216 (310)
T ss_dssp             BCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHH----
T ss_pred             hccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHH----
Confidence            7889999999999884 44444444788999999999987642  2  233467889999999999886 222110    


Q ss_pred             cccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCC---ccCceEeCcC
Q 042476          199 AMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL---EGLQTLNLSH  275 (433)
Q Consensus       199 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~Ls~  275 (433)
                                                          ....+.+++|++|++++|.+++..|..+..+   ++|++|+|++
T Consensus       217 ------------------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~  260 (310)
T 4glp_A          217 ------------------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF  260 (310)
T ss_dssp             ------------------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred             ------------------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence                                                0012335668889999999987777777666   6999999999


Q ss_pred             cccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcc
Q 042476          276 NFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG  328 (433)
Q Consensus       276 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  328 (433)
                      |+++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus       261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            9998 6777664  8999999999999854 33 6788999999999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=4.8e-23  Score=188.84  Aligned_cols=153  Identities=25%  Similarity=0.245  Sum_probs=119.5

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      ++++++++++++.++. +|..+     .++++.|++++|.+++..+..|.++++|++|++++|.++...+ . ..+++|+
T Consensus         9 l~~l~~l~~~~~~l~~-ip~~~-----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~   80 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTA-LPPDL-----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLG   80 (290)
T ss_dssp             STTCCEEECTTSCCSS-CCSCC-----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCC
T ss_pred             cCCccEEECCCCCCCc-CCCCC-----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCC
Confidence            5689999999999985 55544     4789999999999998888999999999999999999995433 3 7899999


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN  184 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  184 (433)
                      +|++++|.+. .+|..+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            9999999998 56777788888888888888874 455444446677777777777766555555566666666666666


Q ss_pred             cCc
Q 042476          185 NLS  187 (433)
Q Consensus       185 ~~~  187 (433)
                      +++
T Consensus       159 ~l~  161 (290)
T 1p9a_G          159 NLT  161 (290)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=8.2e-26  Score=216.37  Aligned_cols=242  Identities=15%  Similarity=0.233  Sum_probs=166.4

Q ss_pred             CCCCccEEEcCCCcCcCc----CCcccCCCCCCCEEEccCCc---CcccCCccc-------CCCCCcCEEEccCCcccc-
Q 042476           51 NKSVIISLKLSKNYFSGD----IPDCWMNWPHLQVLNLDDNY---FTGNLPISI-------GTLSSLRSLHLRNNRLAG-  115 (433)
Q Consensus        51 ~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~---i~~~~p~~~-------~~l~~L~~L~L~~n~l~~-  115 (433)
                      .+++|++|++++|.+...    ++..+..+++|++|+|++|.   +.+.+|..+       ..+++|++|++++|.+.. 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            367777888887777654    33446677788888887753   333444433       677888888888888775 


Q ss_pred             ---cCCccccCCCCCcEEECcCccccccCChhhhh---cC---------CCccEEEeeCcccc-ccCC---ccccCCCCc
Q 042476          116 ---IFPVSLKNCSSLISLDIGENDFFGSIPTWVGE---RF---------PRLLILNLRSNKFN-GSLP---VQLCHLTFL  176 (433)
Q Consensus       116 ---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~---~l---------~~L~~L~L~~n~l~-~~~~---~~l~~l~~L  176 (433)
                         .++..+..+++|++|++++|.+....+..+..   .+         ++|++|++++|.+. ..++   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               35666777888888888888774333322221   22         78888888888876 2333   356677788


Q ss_pred             CEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCccc-
Q 042476          177 RILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFS-  255 (433)
Q Consensus       177 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-  255 (433)
                      ++|++++|.+...-..                                       ......+..+++|+.|+|++|.++ 
T Consensus       190 ~~L~L~~n~l~~~g~~---------------------------------------~l~~~~l~~~~~L~~L~Ls~n~l~~  230 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIE---------------------------------------HLLLEGLAYCQELKVLDLQDNTFTH  230 (386)
T ss_dssp             CEEECCSSCCCHHHHH---------------------------------------HHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred             CEEECcCCCCCHhHHH---------------------------------------HHHHHHhhcCCCccEEECcCCCCCc
Confidence            8888888877521000                                       000001223556888888888885 


Q ss_pred             ---ccCCccccCCccCceEeCcCcccccC----CCccc--CCCCCCCEEeCcCCcCCC----CCCccc-cCCCCCCeeeC
Q 042476          256 ---GEIPMQLTNLEGLQTLNLSHNFFVGK----IPENI--GNMRSIESLDFSTNRLFG----RIPQSM-SSLSFLNHLNL  321 (433)
Q Consensus       256 ---~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~L  321 (433)
                         +.+|..+..+++|+.|+|++|++++.    ++..+  +.+++|+.|++++|.+++    .+|..+ .++++|+.|++
T Consensus       231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence               45677788889999999999998765    45555  348899999999999987    477766 66899999999


Q ss_pred             cCCcCcccCC
Q 042476          322 SENDLSGQIP  331 (433)
Q Consensus       322 ~~n~l~~~~p  331 (433)
                      ++|++++..+
T Consensus       311 ~~N~l~~~~~  320 (386)
T 2ca6_A          311 NGNRFSEEDD  320 (386)
T ss_dssp             TTSBSCTTSH
T ss_pred             cCCcCCcchh
Confidence            9999987554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=6.4e-25  Score=208.20  Aligned_cols=180  Identities=22%  Similarity=0.223  Sum_probs=98.4

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCC-CCCC-CccEEEcCCCcCcCcCCcccCCC---
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG-DNKS-VIISLKLSKNYFSGDIPDCWMNW---   76 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~-~L~~L~L~~n~l~~~~~~~~~~l---   76 (433)
                      ++++.|.+++.+|++...     +++|++|++++|.+++..+..++.. ..++ +|++|++++|.+.+..+..+..+   
T Consensus         3 ~~ls~n~~~~~~~~~~~~-----~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~   77 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSI-----PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA   77 (362)
T ss_dssp             EECCCCTTCCHHHHHHTS-----CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred             cccccccchHHHHHHHhC-----CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence            466777777666644221     3347777777777766555222111 3355 67777777777665555555443   


Q ss_pred             --CCCCEEEccCCcCcccCCcc----cCCC-CCcCEEEccCCcccccCCccc----cC-CCCCcEEECcCccccccC---
Q 042476           77 --PHLQVLNLDDNYFTGNLPIS----IGTL-SSLRSLHLRNNRLAGIFPVSL----KN-CSSLISLDIGENDFFGSI---  141 (433)
Q Consensus        77 --~~L~~L~L~~n~i~~~~p~~----~~~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~~~~~~---  141 (433)
                        ++|++|+|++|.++...+..    +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+.+..   
T Consensus        78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  157 (362)
T 3goz_A           78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE  157 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence              66777777777766544443    3333 567777777776665444332    22 246666666666664322   


Q ss_pred             -ChhhhhcCC-CccEEEeeCccccccCCc----cccCC-CCcCEEEccCCcCc
Q 042476          142 -PTWVGERFP-RLLILNLRSNKFNGSLPV----QLCHL-TFLRILDVAHNNLS  187 (433)
Q Consensus       142 -~~~~~~~l~-~L~~L~L~~n~l~~~~~~----~l~~l-~~L~~L~l~~n~~~  187 (433)
                       +..+. .++ +|++|++++|.++...+.    .+..+ ++|++|++++|.+.
T Consensus       158 l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          158 LIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence             22222 233 666666666666543332    22333 36666666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=1.4e-24  Score=203.75  Aligned_cols=251  Identities=18%  Similarity=0.259  Sum_probs=165.1

Q ss_pred             CccEEEccCCcccccCCccccCCCCC--CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCccc-CCcccCCCCCc
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNK--SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGN-LPISIGTLSSL  103 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~p~~~~~l~~L  103 (433)
                      .++.++++++.+.+.   .+   ..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|
T Consensus        48 ~~~~l~l~~~~~~~~---~~---~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           48 LWQTLDLTGKNLHPD---VT---GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             TSSEEECTTCBCCHH---HH---HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             hheeeccccccCCHH---HH---HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            477888888776632   22   113  6778888888887766555 44678888888888877654 66677778888


Q ss_pred             CEEEccCCcccccCCccccCCCCCcEEECcCc-ccccc-CChhhhhcCCCccEEEeeCc-ccccc-CCccccCCC-CcCE
Q 042476          104 RSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN-DFFGS-IPTWVGERFPRLLILNLRSN-KFNGS-LPVQLCHLT-FLRI  178 (433)
Q Consensus       104 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~  178 (433)
                      ++|++++|.+++..+..+..+++|++|++++| .+.+. ++..+ ..+++|++|++++| .+++. ++..+..++ +|++
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~  199 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ  199 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence            88888888777666777777888888888887 45432 33333 36788888888887 76643 455566777 7888


Q ss_pred             EEccCCc--Cc-ccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCc-c
Q 042476          179 LDVAHNN--LS-GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNN-F  254 (433)
Q Consensus       179 L~l~~n~--~~-~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-~  254 (433)
                      |++++|.  ++ +.++                                            .....+++|+.|++++|. +
T Consensus       200 L~l~~~~~~~~~~~l~--------------------------------------------~~~~~~~~L~~L~l~~~~~l  235 (336)
T 2ast_B          200 LNLSGYRKNLQKSDLS--------------------------------------------TLVRRCPNLVHLDLSDSVML  235 (336)
T ss_dssp             EECCSCGGGSCHHHHH--------------------------------------------HHHHHCTTCSEEECTTCTTC
T ss_pred             EEeCCCcccCCHHHHH--------------------------------------------HHHhhCCCCCEEeCCCCCcC
Confidence            8877773  32 1111                                            122335567778888877 5


Q ss_pred             cccCCccccCCccCceEeCcCcc-cccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCC-CCCCeeeCcCCcCcccCCC
Q 042476          255 SGEIPMQLTNLEGLQTLNLSHNF-FVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSL-SFLNHLNLSENDLSGQIPS  332 (433)
Q Consensus       255 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~  332 (433)
                      ++..+..+..+++|++|++++|. +.......++.+++|+.|++++| ++..   .+..+ ..+..|++++|++++..|.
T Consensus       236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence            65666677777888888888874 33222235667788888888877 3322   22222 2366667777777776664


Q ss_pred             C
Q 042476          333 S  333 (433)
Q Consensus       333 ~  333 (433)
                      .
T Consensus       312 ~  312 (336)
T 2ast_B          312 T  312 (336)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=1.4e-22  Score=180.68  Aligned_cols=132  Identities=19%  Similarity=0.155  Sum_probs=68.7

Q ss_pred             CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCc-CcccCCcccCCCCCcCEEEccC-CcccccCCccccCCCCCcEE
Q 042476           53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNY-FTGNLPISIGTLSSLRSLHLRN-NRLAGIFPVSLKNCSSLISL  130 (433)
Q Consensus        53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  130 (433)
                      +++++|++++|++++..+..|.++++|++|++++|+ ++...+.+|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            355555565555555444455555556666665554 5544444555555555555555 55554444555555555555


Q ss_pred             ECcCccccccCChhhhhcCCCcc---EEEeeCc-cccccCCccccCCCCcC-EEEccCCcCc
Q 042476          131 DIGENDFFGSIPTWVGERFPRLL---ILNLRSN-KFNGSLPVQLCHLTFLR-ILDVAHNNLS  187 (433)
Q Consensus       131 ~L~~n~~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~  187 (433)
                      ++++|.+. .+|.  +..+++|+   +|++++| .+....+..+.++++|+ .|++++|.++
T Consensus       111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            55555552 2443  22344444   5555555 44433334445555555 5555554444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=1.7e-22  Score=180.12  Aligned_cols=196  Identities=16%  Similarity=0.202  Sum_probs=121.7

Q ss_pred             CCCEEEccCCcCcccCCcccCCCCCcCEEEccCCc-ccccCCccccCCCCCcEEECcC-ccccccCChhhhhcCCCccEE
Q 042476           78 HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNR-LAGIFPVSLKNCSSLISLDIGE-NDFFGSIPTWVGERFPRLLIL  155 (433)
Q Consensus        78 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L  155 (433)
                      +|++|++++|++++..+.+|.++++|++|++++|. ++.+.+..|..+++|++|++++ |.+ ..++...+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcCHHHhCCCCCCCEE
Confidence            67888888888876666677778888888888886 7766666777777777777777 666 35554444467777777


Q ss_pred             EeeCccccccCCccccCCCCcC---EEEccCC-cCcccCCCCccccccccccccccccccccccccCCceeeecceeeec
Q 042476          156 NLRSNKFNGSLPVQLCHLTFLR---ILDVAHN-NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTK  231 (433)
Q Consensus       156 ~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (433)
                      ++++|.+.+ +|. +..+++|+   .|++++| .+++..+..+..                                   
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~-----------------------------------  153 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG-----------------------------------  153 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT-----------------------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc-----------------------------------
Confidence            777777764 444 66666666   7777776 555333333333                                   


Q ss_pred             cceeehhhhcccee-EEEcccCcccccCCccccCCccCceEeCcCcc-cccCCCcccCCC-CCCCEEeCcCCcCCCCCCc
Q 042476          232 GLLVEYNSILNLVR-SIDISKNNFSGEIPMQLTNLEGLQTLNLSHNF-FVGKIPENIGNM-RSIESLDFSTNRLFGRIPQ  308 (433)
Q Consensus       232 ~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~  308 (433)
                               +++|+ .|++++|.++...+..+.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++. |.
T Consensus       154 ---------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~  222 (239)
T 2xwt_C          154 ---------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PS  222 (239)
T ss_dssp             ---------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CC
T ss_pred             ---------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Ch
Confidence                     23355 5666666665333333333 566666666663 654445556666 6666666666666533 22


Q ss_pred             cccCCCCCCeeeCcCC
Q 042476          309 SMSSLSFLNHLNLSEN  324 (433)
Q Consensus       309 ~l~~l~~L~~L~L~~n  324 (433)
                      .  .+++|+.|+++++
T Consensus       223 ~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          223 K--GLEHLKELIARNT  236 (239)
T ss_dssp             T--TCTTCSEEECTTC
T ss_pred             h--HhccCceeeccCc
Confidence            2  4455666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=2e-22  Score=180.96  Aligned_cols=117  Identities=17%  Similarity=0.201  Sum_probs=77.3

Q ss_pred             eeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcC
Q 042476          244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSE  323 (433)
Q Consensus       244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  323 (433)
                      |++|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus       109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            55566666666655555567788888888888888866666788888899999999988877777888888899999999


Q ss_pred             CcCcccCCCCcccCc------cCcccccCCcCCCCCCC-CCCCC
Q 042476          324 NDLSGQIPSSTQLQS------FGASCFSGNDLCGAPLP-DCTEK  360 (433)
Q Consensus       324 n~l~~~~p~~~~~~~------l~~~~~~~n~l~~~~~~-~c~~~  360 (433)
                      |++++.......+..      ....+..++.+++.|.. .|...
T Consensus       189 N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  232 (251)
T 3m19_A          189 NQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG  232 (251)
T ss_dssp             CCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred             CceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence            998876443321111      11233445566666554 66654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=188.24  Aligned_cols=232  Identities=17%  Similarity=0.212  Sum_probs=183.5

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCccc--CCCCCCCEEEccCCcCcccCC----cccCC
Q 042476           26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCW--MNWPHLQVLNLDDNYFTGNLP----ISIGT   99 (433)
Q Consensus        26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~p----~~~~~   99 (433)
                      ..++.|.+.++.++......+.....+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            357888888887764322111111225679999999999999999888  899999999999999997544    34567


Q ss_pred             CCCcCEEEccCCcccccCCccccCCCCCcEEECcCcccccc--CC-hhhhhcCCCccEEEeeCccccccCCc----cccC
Q 042476          100 LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGS--IP-TWVGERFPRLLILNLRSNKFNGSLPV----QLCH  172 (433)
Q Consensus       100 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~-~~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~  172 (433)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  ++ ......+++|++|++++|.++. ++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            99999999999999988889999999999999999987442  22 2222478999999999999973 222    3578


Q ss_pred             CCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccC
Q 042476          173 LTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKN  252 (433)
Q Consensus       173 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n  252 (433)
                      +++|++|++++|.+.+..|..+..+..                                         +++|++|++++|
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~-----------------------------------------~~~L~~L~Ls~N  261 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMW-----------------------------------------SSALNSLNLSFA  261 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCC-----------------------------------------CTTCCCEECCSS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccC-----------------------------------------cCcCCEEECCCC
Confidence            899999999999999777776655432                                         345889999999


Q ss_pred             cccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCC
Q 042476          253 NFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFG  304 (433)
Q Consensus       253 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  304 (433)
                      .++ .+|..+.  ++|+.|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus       262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            998 6676664  7999999999999854 43 6788999999999999864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=4.5e-24  Score=200.33  Aligned_cols=252  Identities=15%  Similarity=0.181  Sum_probs=186.4

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCc-CCcccCCCCCCC
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGD-IPDCWMNWPHLQ   80 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~   80 (433)
                      +|+++|.+.+..-    +.+.  .++++.|++++|.+.+..+..    ..+++|++|++++|.+.+. ++..+..+++|+
T Consensus        52 l~l~~~~~~~~~~----~~~~--~~~l~~L~l~~n~l~~~~~~~----~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           52 LDLTGKNLHPDVT----GRLL--SQGVIAFRCPRSFMDQPLAEH----FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             EECTTCBCCHHHH----HHHH--HTTCSEEECTTCEECSCCCSC----CCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             eccccccCCHHHH----Hhhh--hccceEEEcCCccccccchhh----ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            6777776663210    1100  157999999999999876653    3489999999999998865 788889999999


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCC-ccccc-CCccccCCCCCcEEECcCc-ccccc-CChhhhhcCC-CccEE
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNN-RLAGI-FPVSLKNCSSLISLDIGEN-DFFGS-IPTWVGERFP-RLLIL  155 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~~~~~l~-~L~~L  155 (433)
                      +|++++|.+.+..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. ++..+. .++ +|++|
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L  200 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQL  200 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEE
Confidence            9999999999888889999999999999999 67652 6666889999999999999 77543 444444 789 99999


Q ss_pred             EeeCcc--cc-ccCCccccCCCCcCEEEccCCc-CcccCCCCccccccccccccccccccccccccCCceeeecceeeec
Q 042476          156 NLRSNK--FN-GSLPVQLCHLTFLRILDVAHNN-LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTK  231 (433)
Q Consensus       156 ~L~~n~--l~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (433)
                      ++++|.  ++ ..++..+..+++|++|++++|. +++..+..+..+                                  
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l----------------------------------  246 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL----------------------------------  246 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC----------------------------------
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC----------------------------------
Confidence            999994  54 3456677889999999999998 655555444443                                  


Q ss_pred             cceeehhhhccceeEEEcccCc-ccccCCccccCCccCceEeCcCcccccCCCcccCCC-CCCCEEeCcCCcCCCCCCcc
Q 042476          232 GLLVEYNSILNLVRSIDISKNN-FSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNM-RSIESLDFSTNRLFGRIPQS  309 (433)
Q Consensus       232 ~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~  309 (433)
                                ++|++|++++|. ++......+.++++|+.|++++| ++..   .+..+ .++..|++++|.+++..|..
T Consensus       247 ----------~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          247 ----------NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             ----------TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             ----------CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence                      446677777774 32222234667788888888887 4322   22223 24666778888888877776


Q ss_pred             ccC
Q 042476          310 MSS  312 (433)
Q Consensus       310 l~~  312 (433)
                      +..
T Consensus       313 ~~~  315 (336)
T 2ast_B          313 IGN  315 (336)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=2e-24  Score=206.73  Aligned_cols=239  Identities=21%  Similarity=0.226  Sum_probs=185.4

Q ss_pred             CCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCc---CcCcCCccc-------CCCCCCCEEEccCCcCcc--
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNY---FSGDIPDCW-------MNWPHLQVLNLDDNYFTG--   91 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~L~~n~i~~--   91 (433)
                      +++|++|++++|.+++..+..++.. ..+++|++|++++|.   +.+.+|..+       ..+++|++|+|++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            6789999999999998765554322 568999999999964   444555544       689999999999999996  


Q ss_pred             --cCCcccCCCCCcCEEEccCCcccccCCcc----ccCC---------CCCcEEECcCcccc-ccCCh--hhhhcCCCcc
Q 042476           92 --NLPISIGTLSSLRSLHLRNNRLAGIFPVS----LKNC---------SSLISLDIGENDFF-GSIPT--WVGERFPRLL  153 (433)
Q Consensus        92 --~~p~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~L~~n~~~-~~~~~--~~~~~l~~L~  153 (433)
                        .+|..+..+++|++|++++|.+....+..    +..+         ++|++|++++|.+. +.++.  ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              46778889999999999999987443333    3344         89999999999985 33442  2233789999


Q ss_pred             EEEeeCccccc-----cCCccccCCCCcCEEEccCCcCc----ccCCCCccccccccccccccccccccccccCCceeee
Q 042476          154 ILNLRSNKFNG-----SLPVQLCHLTFLRILDVAHNNLS----GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFE  224 (433)
Q Consensus       154 ~L~L~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~~~----~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  224 (433)
                      +|++++|.+..     ..+..+..+++|+.|++++|.++    ..+|..+                              
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l------------------------------  240 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL------------------------------  240 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG------------------------------
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH------------------------------
Confidence            99999999872     23447889999999999999985    2333322                              


Q ss_pred             cceeeeccceeehhhhccceeEEEcccCccccc----CCccc--cCCccCceEeCcCccccc----CCCccc-CCCCCCC
Q 042476          225 DASVVTKGLLVEYNSILNLVRSIDISKNNFSGE----IPMQL--TNLEGLQTLNLSHNFFVG----KIPENI-GNMRSIE  293 (433)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~  293 (433)
                                    ..+++|+.|++++|.+++.    ++..+  ..+++|+.|+|++|.+++    .+|..+ .++++|+
T Consensus       241 --------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~  306 (386)
T 2ca6_A          241 --------------KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  306 (386)
T ss_dssp             --------------GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             --------------ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence                          2355688899999998755    45555  348999999999999987    477776 5689999


Q ss_pred             EEeCcCCcCCCCCC
Q 042476          294 SLDFSTNRLFGRIP  307 (433)
Q Consensus       294 ~L~Ls~n~l~~~~~  307 (433)
                      .|++++|++++..+
T Consensus       307 ~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          307 FLELNGNRFSEEDD  320 (386)
T ss_dssp             EEECTTSBSCTTSH
T ss_pred             EEEccCCcCCcchh
Confidence            99999999987663

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.4e-21  Score=175.39  Aligned_cols=176  Identities=18%  Similarity=0.200  Sum_probs=128.3

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCE
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV   81 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (433)
                      +|++++.++ .+|..    +   .++++.|++++|.+++..+..+   .++++|++|++++|.+++..+..|.++++|++
T Consensus        19 l~~~~~~l~-~~p~~----~---~~~l~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   87 (251)
T 3m19_A           19 VDCQGKSLD-SVPSG----I---PADTEKLDLQSTGLATLSDATF---RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT   87 (251)
T ss_dssp             EECTTCCCS-SCCSC----C---CTTCCEEECTTSCCCCCCTTTT---TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             EecCCCCcc-ccCCC----C---CCCCCEEEccCCCcCccCHhHh---cCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence            566666666 33421    1   2467888888888877666666   45778888888888887777777778888888


Q ss_pred             EEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc
Q 042476           82 LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK  161 (433)
Q Consensus        82 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  161 (433)
                      |++++|.++...+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|++++|.
T Consensus        88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCc
Confidence            888888887666667777888888888888887666666777888888888888774 5555444467888888888888


Q ss_pred             ccccCCccccCCCCcCEEEccCCcCccc
Q 042476          162 FNGSLPVQLCHLTFLRILDVAHNNLSGT  189 (433)
Q Consensus       162 l~~~~~~~l~~l~~L~~L~l~~n~~~~~  189 (433)
                      +.+..+..+..+++|+.|++++|.+...
T Consensus       167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          167 LQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            8766666777788888888888877643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=8.9e-24  Score=200.32  Aligned_cols=257  Identities=18%  Similarity=0.185  Sum_probs=191.5

Q ss_pred             EEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCC----cccCCCC-CCCEEEccCCcCcccCCcccCCC----
Q 042476           30 LLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIP----DCWMNWP-HLQVLNLDDNYFTGNLPISIGTL----  100 (433)
Q Consensus        30 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~p~~~~~l----  100 (433)
                      .+++++|++++.+|..+   ...++|++|++++|.+++..+    +.|.+++ +|++|+|++|.+....+..+..+    
T Consensus         2 ~~~ls~n~~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFT---SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EEECCCCTTCCHHHHHH---TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             ccccccccchHHHHHHH---hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            46788999998887766   335669999999999987666    7778888 89999999999987767666654    


Q ss_pred             -CCcCEEEccCCcccccCCcc----ccCC-CCCcEEECcCccccccCChhhhh---c-CCCccEEEeeCcccccc----C
Q 042476          101 -SSLRSLHLRNNRLAGIFPVS----LKNC-SSLISLDIGENDFFGSIPTWVGE---R-FPRLLILNLRSNKFNGS----L  166 (433)
Q Consensus       101 -~~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~~~~~~~~~~~~---~-l~~L~~L~L~~n~l~~~----~  166 (433)
                       ++|++|++++|.+++..+..    +..+ ++|++|++++|.+.+..+..+..   . .++|++|++++|.+...    +
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence             89999999999998766554    4444 89999999999985444433332   2 36899999999998843    3


Q ss_pred             CccccCCC-CcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhc-cce
Q 042476          167 PVQLCHLT-FLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSIL-NLV  244 (433)
Q Consensus       167 ~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L  244 (433)
                      +..+..++ +|++|++++|.+++..+..+..                                        .+... ++|
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~----------------------------------------~l~~~~~~L  198 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAK----------------------------------------FLASIPASV  198 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHH----------------------------------------HHHTSCTTC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHH----------------------------------------HHHhCCCCC
Confidence            34445555 8999999999887544332211                                        11123 479


Q ss_pred             eEEEcccCccccc----CCccccC-CccCceEeCcCcccccCCC----cccCCCCCCCEEeCcCCcCCCC-------CCc
Q 042476          245 RSIDISKNNFSGE----IPMQLTN-LEGLQTLNLSHNFFVGKIP----ENIGNMRSIESLDFSTNRLFGR-------IPQ  308 (433)
Q Consensus       245 ~~L~L~~n~~~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~-------~~~  308 (433)
                      ++|++++|.++..    ++..+.. .++|++|+|++|++++..+    ..+..+++|+.|++++|.+.+.       ++.
T Consensus       199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~  278 (362)
T 3goz_A          199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA  278 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT
T ss_pred             CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH
Confidence            9999999999863    3444444 4599999999999986544    3456789999999999985433       334


Q ss_pred             cccCCCCCCeeeCcCCcCccc
Q 042476          309 SMSSLSFLNHLNLSENDLSGQ  329 (433)
Q Consensus       309 ~l~~l~~L~~L~L~~n~l~~~  329 (433)
                      .+..+++|+.||+++|++...
T Consensus       279 ~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          279 AFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TSTTCCEEEEECTTSCBCCGG
T ss_pred             HhccCCceEEEecCCCcCCCc
Confidence            567788899999999998765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.3e-21  Score=181.09  Aligned_cols=80  Identities=20%  Similarity=0.324  Sum_probs=47.0

Q ss_pred             ceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476          243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS  322 (433)
Q Consensus       243 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  322 (433)
                      +|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|++++..+  +..+++|+.|+++
T Consensus       152 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~  225 (308)
T 1h6u_A          152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (308)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEcc
Confidence            34555555555543222  5556666666666666653322  5566667777777776654432  5666667777777


Q ss_pred             CCcCcc
Q 042476          323 ENDLSG  328 (433)
Q Consensus       323 ~n~l~~  328 (433)
                      +|++++
T Consensus       226 ~N~i~~  231 (308)
T 1h6u_A          226 NQTITN  231 (308)
T ss_dssp             EEEEEC
T ss_pred             CCeeec
Confidence            776664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.7e-21  Score=180.19  Aligned_cols=192  Identities=21%  Similarity=0.296  Sum_probs=139.2

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.+... +. +..+++|++|++++|.+.+.  ..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            6778888888887764 34 467788888888888888743 33 77888888888888887753  3577788888888


Q ss_pred             CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc
Q 042476          132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA  211 (433)
Q Consensus       132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~  211 (433)
                      +++|.+. .++. + ..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++ ++. +..               
T Consensus       114 l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~---------------  171 (308)
T 1h6u_A          114 LTSTQIT-DVTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LAN---------------  171 (308)
T ss_dssp             CTTSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTT---------------
T ss_pred             CCCCCCC-Cchh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcC---------------
Confidence            8888874 3443 3 367888888888888774422  7778888888888887763 221 222               


Q ss_pred             ccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCC
Q 042476          212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRS  291 (433)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  291 (433)
                                                   +++|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++
T Consensus       172 -----------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~  218 (308)
T 1h6u_A          172 -----------------------------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN  218 (308)
T ss_dssp             -----------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTT
T ss_pred             -----------------------------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCC
Confidence                                         4457778888888775433  6778888888888888875543  778888


Q ss_pred             CCEEeCcCCcCCC
Q 042476          292 IESLDFSTNRLFG  304 (433)
Q Consensus       292 L~~L~Ls~n~l~~  304 (433)
                      |+.|++++|++++
T Consensus       219 L~~L~l~~N~i~~  231 (308)
T 1h6u_A          219 LFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEEEEEEEEEC
T ss_pred             CCEEEccCCeeec
Confidence            8888888888864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=8.9e-21  Score=178.79  Aligned_cols=240  Identities=15%  Similarity=0.155  Sum_probs=150.3

Q ss_pred             cEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCC-cccCCCCCcCE-E
Q 042476           29 GLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLP-ISIGTLSSLRS-L  106 (433)
Q Consensus        29 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~L~~-L  106 (433)
                      ++++-++++++ .+|..+     .+++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+| .+|.++++++. +
T Consensus        12 ~~v~C~~~~Lt-~iP~~l-----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL-----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC-----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             CEEEecCCCCC-ccCcCc-----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            45666677776 355444     3567777888877776556677778888888888877754443 46777777665 4


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeC-ccccccCCccccCCC-CcCEEEccCC
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS-NKFNGSLPVQLCHLT-FLRILDVAHN  184 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n  184 (433)
                      .+.+|.+..+.|..|..+++|++|++++|.+. .++...+....++..+++.+ +.+....+..+..+. .++.|++++|
T Consensus        86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             EEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             cccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence            55567777777777777788888888877773 44444333456677777755 445544444555553 5777888888


Q ss_pred             cCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEccc-CcccccCCcccc
Q 042476          185 NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISK-NNFSGEIPMQLT  263 (433)
Q Consensus       185 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~  263 (433)
                      .++ .++.....                                            ..+|+++++.+ |.++...+..|.
T Consensus       165 ~i~-~i~~~~f~--------------------------------------------~~~L~~l~l~~~n~l~~i~~~~f~  199 (350)
T 4ay9_X          165 GIQ-EIHNSAFN--------------------------------------------GTQLDELNLSDNNNLEELPNDVFH  199 (350)
T ss_dssp             CCC-EECTTSST--------------------------------------------TEEEEEEECTTCTTCCCCCTTTTT
T ss_pred             ccc-CCChhhcc--------------------------------------------ccchhHHhhccCCcccCCCHHHhc
Confidence            776 33322211                                            12356666654 445544445667


Q ss_pred             CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCC
Q 042476          264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEN  324 (433)
Q Consensus       264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  324 (433)
                      ++++|+.|+|++|+++. +|..  .+.+|+.|.+.++.-...+|. +..+++|+.+++.++
T Consensus       200 ~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          200 GASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             TEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             cCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            77778888888887773 3331  235566666555544445553 667777777777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=1.3e-24  Score=219.93  Aligned_cols=325  Identities=10%  Similarity=0.014  Sum_probs=165.9

Q ss_pred             CCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCcCcC----cCCcccCCCCCCCEEEccCCcCcccCCcccCC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNYFSG----DIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT   99 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~   99 (433)
                      +++|++|++++|.+++.....+... ..+++|++|++++|.+++    .++..+.++++|++|++++|.+.+ +|..+.+
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~  241 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA  241 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence            5578888888887765532211111 346778888888777752    334445567788888888877763 5566666


Q ss_pred             CCCcCEEEccCCccc---ccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCC-ccccCCCC
Q 042476          100 LSSLRSLHLRNNRLA---GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP-VQLCHLTF  175 (433)
Q Consensus       100 l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~  175 (433)
                      +++|++|++++....   ...+..+..+++|+.|+++++.. ..+|..+. .+++|++|++++|.++.... ..+..+++
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            777777777643211   12223344555555555555422 23333322 45555555555555432211 22345555


Q ss_pred             cCEEEccCCcCcccCCCCcccccccccccccc----------cccccc----cccc-CCceeeecc--eeeeccceeehh
Q 042476          176 LRILDVAHNNLSGTIPRCINNFTAMATINSSN----------QKNAIY----YFVT-RGNIVFEDA--SVVTKGLLVEYN  238 (433)
Q Consensus       176 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~----------~~~~~~----~~~~-~~~~~~~~~--~~~~~~~~~~~~  238 (433)
                      |++|+++++...+.++.....+++|+.|+++.          +.....    .... ........+  ............
T Consensus       320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~  399 (592)
T 3ogk_B          320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG  399 (592)
T ss_dssp             CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred             CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence            55555552211122222223444555555442          110000    0000 000000000  000011111122


Q ss_pred             hhccceeEEEcc----cCccccc-----CCccccCCccCceEeCcCcc--cccCCCcccC-CCCCCCEEeCcCCcCCC-C
Q 042476          239 SILNLVRSIDIS----KNNFSGE-----IPMQLTNLEGLQTLNLSHNF--FVGKIPENIG-NMRSIESLDFSTNRLFG-R  305 (433)
Q Consensus       239 ~~~~~L~~L~L~----~n~~~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~l~-~l~~L~~L~Ls~n~l~~-~  305 (433)
                      ..+++|+.|+++    .|.+++.     ++..+.++++|+.|+++.|.  +++..+..++ .+++|+.|++++|.+++ .
T Consensus       400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  479 (592)
T 3ogk_B          400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG  479 (592)
T ss_dssp             HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred             hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence            236677777775    4455532     22234557777777776433  4444333332 36778888888887765 3


Q ss_pred             CCccccCCCCCCeeeCcCCcCccc-CCC-CcccCccCcccccCCcCCCC
Q 042476          306 IPQSMSSLSFLNHLNLSENDLSGQ-IPS-STQLQSFGASCFSGNDLCGA  352 (433)
Q Consensus       306 ~~~~l~~l~~L~~L~L~~n~l~~~-~p~-~~~~~~l~~~~~~~n~l~~~  352 (433)
                      ++..+..+++|++|++++|+++.. ++. ...++.++.+++++|.+++.
T Consensus       480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            445556777888888888876543 121 13456777778888776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=5e-21  Score=180.50  Aligned_cols=241  Identities=14%  Similarity=0.066  Sum_probs=163.4

Q ss_pred             cEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCC-ccccCCCCCcE-EECc
Q 042476           56 ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP-VSLKNCSSLIS-LDIG  133 (433)
Q Consensus        56 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~  133 (433)
                      ++++-++++++ .+|..+  .+++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+| .+|.+++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56666777777 456554  2568888888888885555678888888888888888755443 45677777665 4455


Q ss_pred             CccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccC-CcCcccCCCCccccccccccccccccccc
Q 042476          134 ENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAH-NNLSGTIPRCINNFTAMATINSSNQKNAI  212 (433)
Q Consensus       134 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~~~~~~  212 (433)
                      .|.+ ..+++..+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+               
T Consensus        89 ~N~l-~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~---------------  152 (350)
T 4ay9_X           89 ANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL---------------  152 (350)
T ss_dssp             ETTC-CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS---------------
T ss_pred             CCcc-cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc---------------
Confidence            5666 455555555778888888888877755555555666677777754 34432222222211               


Q ss_pred             cccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcC-cccccCCCcccCCCCC
Q 042476          213 YYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSH-NFFVGKIPENIGNMRS  291 (433)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~  291 (433)
                                                  ...++.|++++|.++...+..+ ...+|++|++++ |.++...++.|..+++
T Consensus       153 ----------------------------~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~  203 (350)
T 4ay9_X          153 ----------------------------SFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASG  203 (350)
T ss_dssp             ----------------------------BSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred             ----------------------------chhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcc
Confidence                                        2347889999999985544444 557899999986 5666444467899999


Q ss_pred             CCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC
Q 042476          292 IESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN  347 (433)
Q Consensus       292 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n  347 (433)
                      |+.|++++|+++...+..+   .+|+.|.+.++.-...+|....++.++.+++..+
T Consensus       204 L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          204 PVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             CSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred             cchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence            9999999999986555554   4566666655554457787778888888777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.5e-20  Score=163.80  Aligned_cols=85  Identities=20%  Similarity=0.189  Sum_probs=36.9

Q ss_pred             CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476           53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI  132 (433)
Q Consensus        53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  132 (433)
                      +++++|++++|.+++..+..|.++++|++|++++|++....+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            34444444444444333334444444444444444444333333444444444444444444333333344444444444


Q ss_pred             cCccc
Q 042476          133 GENDF  137 (433)
Q Consensus       133 ~~n~~  137 (433)
                      ++|.+
T Consensus       108 ~~N~l  112 (208)
T 2o6s_A          108 NTNQL  112 (208)
T ss_dssp             CSSCC
T ss_pred             CCCcC
Confidence            44443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=4.1e-20  Score=160.92  Aligned_cols=129  Identities=22%  Similarity=0.232  Sum_probs=92.2

Q ss_pred             cEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCc
Q 042476           56 ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN  135 (433)
Q Consensus        56 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  135 (433)
                      +.++.+++.++ .+|..+  .++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            45666666665 344433  357888888888888666666778888888888888888666666777888888888888


Q ss_pred             cccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcc
Q 042476          136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSG  188 (433)
Q Consensus       136 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  188 (433)
                      .+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence            774 5555544467778888887777776555566777777777777777663

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.83  E-value=6.5e-23  Score=207.35  Aligned_cols=343  Identities=12%  Similarity=0.051  Sum_probs=225.4

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCc-ccccCCccccCCCCCCCccEEEcCCCcCcCc----CCcccCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNA-LSGSIIHLICNGDNKSVIISLKLSKNYFSGD----IPDCWMN   75 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~   75 (433)
                      +|||++|.+++..+.+.....   ..+|++|+++++. ++......+.  .++++|++|++++|.+.+.    ++..+.+
T Consensus       116 ~L~L~~~~i~~~~~~~l~~~~---~~~L~~L~L~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  190 (592)
T 3ogk_B          116 SVHFRRMIVSDLDLDRLAKAR---ADDLETLKLDKCSGFTTDGLLSIV--THCRKIKTLLMEESSFSEKDGKWLHELAQH  190 (592)
T ss_dssp             EEEEESCBCCHHHHHHHHHHH---GGGCCEEEEESCEEEEHHHHHHHH--HHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred             eEEeeccEecHHHHHHHHHhc---cccCcEEECcCCCCcCHHHHHHHH--hhCCCCCEEECccccccCcchhHHHHHHhc
Confidence            367777777655432211111   1349999999986 3222111111  3489999999999998755    3334567


Q ss_pred             CCCCCEEEccCCcCc----ccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCcccc---ccCChhhhhc
Q 042476           76 WPHLQVLNLDDNYFT----GNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFF---GSIPTWVGER  148 (433)
Q Consensus        76 l~~L~~L~L~~n~i~----~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~~  148 (433)
                      +++|++|++++|.+.    ..++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.....   ...+..+. .
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~  268 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV-F  268 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC-C
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh-c
Confidence            899999999999987    3345556788999999999999885 6688999999999999864321   12223333 6


Q ss_pred             CCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCC-CCcccccccccccccccccc--ccccc-cCCceeee
Q 042476          149 FPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIP-RCINNFTAMATINSSNQKNA--IYYFV-TRGNIVFE  224 (433)
Q Consensus       149 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~~~~~--~~~~~-~~~~~~~~  224 (433)
                      +++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..+++|+.|++..+...  +.... ........
T Consensus       269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            789999999886443 567778889999999999999764332 34578899999988733111  00000 00001111


Q ss_pred             cce-------------eeeccceeehhhhccceeEEEcccCcccccCCccccC-CccCceEeCc----CcccccC-----
Q 042476          225 DAS-------------VVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN-LEGLQTLNLS----HNFFVGK-----  281 (433)
Q Consensus       225 ~~~-------------~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~-----  281 (433)
                      .+.             .............+++|++|+++.+.+++..+..+.. +++|+.|+++    .|++++.     
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            111             1111112223445788999999888887665555554 7889999996    5666643     


Q ss_pred             CCcccCCCCCCCEEeCcCCc--CCCCCCccc-cCCCCCCeeeCcCCcCccc-CCC-CcccCccCcccccCCcCCC
Q 042476          282 IPENIGNMRSIESLDFSTNR--LFGRIPQSM-SSLSFLNHLNLSENDLSGQ-IPS-STQLQSFGASCFSGNDLCG  351 (433)
Q Consensus       282 ~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~l-~~l~~L~~L~L~~n~l~~~-~p~-~~~~~~l~~~~~~~n~l~~  351 (433)
                      ++..+..+++|+.|++++|.  +++..+..+ ..+++|+.|++++|++++. ++. ...++.++.+++++|.+++
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  502 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE  502 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred             HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence            33335668899999997654  555444433 3478899999999998752 221 1345778889999987653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=1.2e-19  Score=180.26  Aligned_cols=186  Identities=28%  Similarity=0.397  Sum_probs=91.6

Q ss_pred             CccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECc
Q 042476           54 VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIG  133 (433)
Q Consensus        54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  133 (433)
                      +++.|++++|.+++ +|..+  .++|++|+|++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            45555555555543 33322  244555555555555 344   234455555555555553 333 332  55555555


Q ss_pred             CccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccc
Q 042476          134 ENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIY  213 (433)
Q Consensus       134 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~  213 (433)
                      +|.+.+ +|.    .+++|+.|++++|.+++ +|.   .+++|+.|++++|.+++ +|. +.                  
T Consensus       129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------  179 (571)
T 3cvr_A          129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------  179 (571)
T ss_dssp             SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------------------
T ss_pred             CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------------------
Confidence            555532 443    24555555555555553 333   34455555555555542 332 21                  


Q ss_pred             ccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccC-------ceEeCcCcccccCCCccc
Q 042476          214 YFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGL-------QTLNLSHNFFVGKIPENI  286 (433)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~l  286 (433)
                                                  ++|+.|++++|.++ .+|. +..  +|       +.|+|++|+++ .+|..+
T Consensus       180 ----------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l  226 (571)
T 3cvr_A          180 ----------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI  226 (571)
T ss_dssp             ----------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred             ----------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence                                        12445555555554 3333 322  44       66666666665 455555


Q ss_pred             CCCCCCCEEeCcCCcCCCCCCccccC
Q 042476          287 GNMRSIESLDFSTNRLFGRIPQSMSS  312 (433)
Q Consensus       287 ~~l~~L~~L~Ls~n~l~~~~~~~l~~  312 (433)
                      ..+++|+.|++++|.+++.+|..+..
T Consensus       227 ~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             GGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            55666666666666666666555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=1.4e-19  Score=179.77  Aligned_cols=182  Identities=24%  Similarity=0.368  Sum_probs=114.2

Q ss_pred             CCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEe
Q 042476           78 HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNL  157 (433)
Q Consensus        78 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  157 (433)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.+.+ +|. +. .  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEEC
Confidence            67777777777764 55544  256777777777776 344   345677777777777643 655 32 2  7777777


Q ss_pred             eCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeeh
Q 042476          158 RSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEY  237 (433)
Q Consensus       158 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (433)
                      ++|.+++ +|.   .+++|+.|++++|.+++ +|.   .                                         
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~-----------------------------------------  158 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L-----------------------------------------  158 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C-----------------------------------------
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c-----------------------------------------
Confidence            7777764 444   56677777777777663 332   0                                         


Q ss_pred             hhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCC-------CEEeCcCCcCCCCCCccc
Q 042476          238 NSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI-------ESLDFSTNRLFGRIPQSM  310 (433)
Q Consensus       238 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------~~L~Ls~n~l~~~~~~~l  310 (433)
                         +++|+.|++++|.+++ +|. +.  ++|+.|+|++|+++ .+|. +..  +|       +.|++++|+++ .+|..+
T Consensus       159 ---l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l  226 (571)
T 3cvr_A          159 ---PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI  226 (571)
T ss_dssp             ---CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred             ---CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence               2346667777777764 444 44  67777777777776 5555 433  55       77777777775 456656


Q ss_pred             cCCCCCCeeeCcCCcCcccCCC
Q 042476          311 SSLSFLNHLNLSENDLSGQIPS  332 (433)
Q Consensus       311 ~~l~~L~~L~L~~n~l~~~~p~  332 (433)
                      ..+++|+.|++++|++++.+|.
T Consensus       227 ~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             GGSCTTEEEECCSSSCCHHHHH
T ss_pred             hcCCCCCEEEeeCCcCCCcCHH
Confidence            6677777777777777765543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=1.3e-19  Score=171.60  Aligned_cols=157  Identities=25%  Similarity=0.278  Sum_probs=75.4

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      .++.|++++|++++..+..+.  .++++|+.|+|++|++++..+..|.++++|++|+|++|++....+..|.++++|++|
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~--~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTP--TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSS--SCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCCCCccChhhhh--hcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence            345555555555544433331  034555555555555554444455555555555555555554444445555555555


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhh---hcCCCccEEEeeCccccccCCccccCCCC--cCEEEc
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVG---ERFPRLLILNLRSNKFNGSLPVQLCHLTF--LRILDV  181 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l  181 (433)
                      +|++|.+....+..|..+++|++|+|++|.+ ..+|..++   ..+++|+.|+|++|.+....+..+..++.  ++.|++
T Consensus       118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l  196 (361)
T 2xot_A          118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL  196 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEEC
T ss_pred             ECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEe
Confidence            5555555544445555555555555555555 23444433   23455555555555554332233444443  244555


Q ss_pred             cCCcC
Q 042476          182 AHNNL  186 (433)
Q Consensus       182 ~~n~~  186 (433)
                      ++|.+
T Consensus       197 ~~N~~  201 (361)
T 2xot_A          197 HNNPL  201 (361)
T ss_dssp             CSSCE
T ss_pred             cCCCc
Confidence            55444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=7.2e-19  Score=154.26  Aligned_cols=155  Identities=21%  Similarity=0.196  Sum_probs=127.4

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCC-cccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIP-DCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      -+.+++++|.++. +|..+     ...+++|++++|.+++..+ ..|.++++|++|+|++|.+++..+.+|.++++|++|
T Consensus        13 ~~~l~~s~n~l~~-iP~~~-----~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   86 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHI-----PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI   86 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCC-----CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCEeEeCCCCccc-CccCC-----CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence            4588899988875 55554     4567889999999887644 557888999999999999987777788999999999


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL  186 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  186 (433)
                      ++++|.+++..+..|..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus        87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            9999999888887888899999999999988544454444 789999999999999877788899999999999999988


Q ss_pred             ccc
Q 042476          187 SGT  189 (433)
Q Consensus       187 ~~~  189 (433)
                      ...
T Consensus       166 ~c~  168 (220)
T 2v70_A          166 NCN  168 (220)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=6.3e-19  Score=154.62  Aligned_cols=89  Identities=22%  Similarity=0.235  Sum_probs=69.7

Q ss_pred             eeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcC
Q 042476          244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSE  323 (433)
Q Consensus       244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  323 (433)
                      |++|++++|.+++..+..|..+++|++|+|++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence            55666666666655566677788888888888888877778888888888888888888877788888888888888888


Q ss_pred             CcCcccCCC
Q 042476          324 NDLSGQIPS  332 (433)
Q Consensus       324 n~l~~~~p~  332 (433)
                      |++.+.++.
T Consensus       163 N~l~c~c~l  171 (220)
T 2v70_A          163 NPFNCNCYL  171 (220)
T ss_dssp             CCEECSGGG
T ss_pred             cCCcCCCch
Confidence            888876553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=1.4e-18  Score=152.33  Aligned_cols=153  Identities=20%  Similarity=0.228  Sum_probs=124.4

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476           28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH  107 (433)
Q Consensus        28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~  107 (433)
                      -+.++.+++.++. +|..+     .++++.|++++|.+++..+..|..+++|++|+|++|.+.+..|.+|.++++|++|+
T Consensus        13 ~~~v~c~~~~l~~-iP~~l-----~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~   86 (220)
T 2v9t_B           13 NNIVDCRGKGLTE-IPTNL-----PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV   86 (220)
T ss_dssp             TTEEECTTSCCSS-CCSSC-----CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred             CCEEEcCCCCcCc-CCCcc-----CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence            3578888888864 45444     46888899999988877777888889999999999998877788888899999999


Q ss_pred             ccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476          108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                      +++|.++...+..|..+++|++|++++|.+.+ ++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus        87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           87 LYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCcCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            99999887766678888999999999998854 44444447889999999999988777777888889999999988875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=1.2e-18  Score=152.91  Aligned_cols=156  Identities=18%  Similarity=0.207  Sum_probs=105.5

Q ss_pred             cEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccc
Q 042476          128 ISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSN  207 (433)
Q Consensus       128 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  207 (433)
                      +.++++++.+ ..+|..+.   ++++.|++++|.+.+..+..+..+++|+.|++++|.+++..|..|..+          
T Consensus        14 ~~v~c~~~~l-~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l----------   79 (220)
T 2v9t_B           14 NIVDCRGKGL-TEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL----------   79 (220)
T ss_dssp             TEEECTTSCC-SSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC----------
T ss_pred             CEEEcCCCCc-CcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC----------
Confidence            3455555554 34444332   456666666666665555566666666666666666664445444433          


Q ss_pred             ccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccC
Q 042476          208 QKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIG  287 (433)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~  287 (433)
                                                        ++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..|.
T Consensus        80 ----------------------------------~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~  125 (220)
T 2v9t_B           80 ----------------------------------RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ  125 (220)
T ss_dssp             ----------------------------------SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ----------------------------------cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence                                              2355666666666655555567788888888888888877778888


Q ss_pred             CCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCC
Q 042476          288 NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIP  331 (433)
Q Consensus       288 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p  331 (433)
                      .+++|+.|++++|++++..+..+..+++|+.|++++|++.+...
T Consensus       126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            88888888888888887777778888888888888888877543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=3.1e-18  Score=151.20  Aligned_cols=156  Identities=18%  Similarity=0.113  Sum_probs=136.7

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      +-+.++.+++.++. +|..+     .++|++|++++|.+++..|..|.++++|++|+|++|.+....+..|.++++|++|
T Consensus        20 s~~~v~c~~~~l~~-ip~~~-----~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L   93 (229)
T 3e6j_A           20 SGTTVDCRSKRHAS-VPAGI-----PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL   93 (229)
T ss_dssp             ETTEEECTTSCCSS-CCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             eCCEeEccCCCcCc-cCCCC-----CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence            46789999998864 55444     5899999999999999889999999999999999999986666778999999999


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL  186 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  186 (433)
                      ++++|.+++..+..|..+++|++|++++|.+. .+|..+. .+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus        94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             ECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            99999999887778899999999999999994 8888876 799999999999999976667899999999999999998


Q ss_pred             cccC
Q 042476          187 SGTI  190 (433)
Q Consensus       187 ~~~~  190 (433)
                      ....
T Consensus       172 ~c~c  175 (229)
T 3e6j_A          172 DCEC  175 (229)
T ss_dssp             CTTB
T ss_pred             cCCc
Confidence            7443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.79  E-value=2.7e-21  Score=195.53  Aligned_cols=339  Identities=16%  Similarity=0.119  Sum_probs=193.6

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCC-cccccCCccccCCCCCCCccEEEcCCCcCcCcCCcc----cCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNN-ALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDC----WMN   75 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~~   75 (433)
                      +|+|++|.+++..+....    ..+++|++|++++| .+++.....+.  .++++|++|++++|.+++..+..    ...
T Consensus       109 ~L~L~~~~~~~~~~~~l~----~~~~~L~~L~L~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          109 EIRLKRMVVTDDCLELIA----KSFKNFKVLVLSSCEGFSTDGLAAIA--ATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             EEEEESCBCCHHHHHHHH----HHCTTCCEEEEESCEEEEHHHHHHHH--HHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             eEEeeCcEEcHHHHHHHH----HhCCCCcEEeCCCcCCCCHHHHHHHH--HhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            367777777665332111    11568999999988 55543222221  24788999999988876544333    336


Q ss_pred             CCCCCEEEccCCc--Cccc-CCcccCCCCCcCEEEccCC-cccccCCccccCCCCCcEEECcCcc---------------
Q 042476           76 WPHLQVLNLDDNY--FTGN-LPISIGTLSSLRSLHLRNN-RLAGIFPVSLKNCSSLISLDIGEND---------------  136 (433)
Q Consensus        76 l~~L~~L~L~~n~--i~~~-~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~---------------  136 (433)
                      +++|++|++++|.  +... ++..+.++++|++|++++| .+. .++..+..+++|++|+++.+.               
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l  261 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL  261 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence            7789999998886  2211 2222345688888888887 333 255555666666666644331               


Q ss_pred             -----------c----cccCChhhhhcCCCccEEEeeCccccccC-CccccCCCCcCEEEccCCcCc-ccCCCCcccccc
Q 042476          137 -----------F----FGSIPTWVGERFPRLLILNLRSNKFNGSL-PVQLCHLTFLRILDVAHNNLS-GTIPRCINNFTA  199 (433)
Q Consensus       137 -----------~----~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~  199 (433)
                                 +    .+.++..+. .+++|++|++++|.+.... ...+..+++|++|++++| +. ..++.....+++
T Consensus       262 ~~~~~L~~Ls~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVPAYLPAVYS-VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HTCTTCCEEECCBTCCGGGGGGGHH-HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             hcCCCcccccCCcccchhhHHHHHH-hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence                       0    012222222 5678888888888765332 223557788888888877 32 122222334677


Q ss_pred             cccccccccc-------ccccc-----ccc-CCceeeecce--eeeccceeehhhhccceeEEEcc--c----Cccccc-
Q 042476          200 MATINSSNQK-------NAIYY-----FVT-RGNIVFEDAS--VVTKGLLVEYNSILNLVRSIDIS--K----NNFSGE-  257 (433)
Q Consensus       200 L~~L~l~~~~-------~~~~~-----~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~L~L~--~----n~~~~~-  257 (433)
                      |+.|++..+.       ..+..     ... ..........  .............+++|+.|+++  +    +.++.. 
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            7777663210       00000     000 0000000000  00011111222347788888888  3    344421 


Q ss_pred             ----CCccccCCccCceEeCcCcccccCCCcccCC-CCCCCEEeCcCCcCCCCCCccc-cCCCCCCeeeCcCCcCcccCC
Q 042476          258 ----IPMQLTNLEGLQTLNLSHNFFVGKIPENIGN-MRSIESLDFSTNRLFGRIPQSM-SSLSFLNHLNLSENDLSGQIP  331 (433)
Q Consensus       258 ----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p  331 (433)
                          ++..+..+++|+.|+|++ .+++..+..++. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++...
T Consensus       420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~  498 (594)
T 2p1m_B          420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL  498 (594)
T ss_dssp             THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred             hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence                112255678888888877 665555555544 7889999999998866544433 668889999999998854322


Q ss_pred             --CCcccCccCcccccCCcC
Q 042476          332 --SSTQLQSFGASCFSGNDL  349 (433)
Q Consensus       332 --~~~~~~~l~~~~~~~n~l  349 (433)
                        ....++.++.+++++|.+
T Consensus       499 ~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          499 LANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHhCCCCCEEeeeCCCC
Confidence              123467788888888865

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=9.9e-22  Score=198.76  Aligned_cols=301  Identities=15%  Similarity=0.079  Sum_probs=161.4

Q ss_pred             CCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCc--CcC-cCCcccCCCCCCCEEEccCCcCcccCCcccCCC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNY--FSG-DIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTL  100 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l  100 (433)
                      +++|++|++++|.+++..+..+... ..+++|++|++++|.  +.. .++..+.++++|++|++++|.....++..+..+
T Consensus       155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~  234 (594)
T 2p1m_B          155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA  234 (594)
T ss_dssp             CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred             CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence            5578888888877776555444332 356777888877775  211 111222345777777777762222244445555


Q ss_pred             CCcCEEEccCCc--------------------------cc----ccCCccccCCCCCcEEECcCccccccCChhhhhcCC
Q 042476          101 SSLRSLHLRNNR--------------------------LA----GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP  150 (433)
Q Consensus       101 ~~L~~L~L~~n~--------------------------l~----~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  150 (433)
                      ++|+.|+++.+.                          +.    ..++..+..+++|++|++++|.+.+.....+...++
T Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~  314 (594)
T 2p1m_B          235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP  314 (594)
T ss_dssp             TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred             CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence            555555543321                          00    112222335567777777777654333333334566


Q ss_pred             CccEEEeeCcccccc-CCccccCCCCcCEEEccC---------CcCcccCCCCc-cccccccccccccccccccc--ccc
Q 042476          151 RLLILNLRSNKFNGS-LPVQLCHLTFLRILDVAH---------NNLSGTIPRCI-NNFTAMATINSSNQKNAIYY--FVT  217 (433)
Q Consensus       151 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~---------n~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~--~~~  217 (433)
                      +|++|++++| +... ++.....+++|++|++.+         +.+++.....+ ..+++|+.|.+..+......  ...
T Consensus       315 ~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~  393 (594)
T 2p1m_B          315 KLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA  393 (594)
T ss_dssp             TCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred             CcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence            7777777666 2211 111222355666666622         22221111111 12444444432222110000  000


Q ss_pred             --CCceeeecce--------eee----ccceeehhhhccceeEEEcccCcccccCCccccC-CccCceEeCcCcccccCC
Q 042476          218 --RGNIVFEDAS--------VVT----KGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN-LEGLQTLNLSHNFFVGKI  282 (433)
Q Consensus       218 --~~~~~~~~~~--------~~~----~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~  282 (433)
                        ........+.        ...    ..........+++|+.|++++ .++...+..+.. +++|+.|+|++|.+++..
T Consensus       394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~  472 (594)
T 2p1m_B          394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG  472 (594)
T ss_dssp             HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred             hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence              0000000000        000    011222355678999999987 565444444444 789999999999987665


Q ss_pred             Cccc-CCCCCCCEEeCcCCcCCCCCCc-cccCCCCCCeeeCcCCcCc
Q 042476          283 PENI-GNMRSIESLDFSTNRLFGRIPQ-SMSSLSFLNHLNLSENDLS  327 (433)
Q Consensus       283 ~~~l-~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~  327 (433)
                      +..+ ..+++|+.|++++|.+++.... ....+++|+.|++++|+++
T Consensus       473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            5554 5689999999999999654333 4556899999999999884

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=2.6e-19  Score=179.63  Aligned_cols=192  Identities=24%  Similarity=0.306  Sum_probs=133.2

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      .+..+.+..+.+.+..+.     ..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..|  +..+++|+.|
T Consensus        22 ~l~~l~l~~~~i~~~~~~-----~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQ-----NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHTTCSCTTSEECH-----HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHHHHhccCCCcccccch-----hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            455556666666654432     2367888888888887743 3 47778888888888888875443  7788888888


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL  186 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  186 (433)
                      +|++|.+.+ ++ .+..+++|++|+|++|.+. .++ .+. .+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+
T Consensus        93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A           93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC-CCG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred             ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC-CCc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence            888888874 33 5777888888888888874 333 333 678888888888887753  5677778888888888777


Q ss_pred             cccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCc
Q 042476          187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE  266 (433)
Q Consensus       187 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~  266 (433)
                      .+..|  +..                                            +++|+.|+|++|.+++.  ..+..++
T Consensus       166 ~~~~~--l~~--------------------------------------------l~~L~~L~Ls~N~i~~l--~~l~~l~  197 (605)
T 1m9s_A          166 SDIVP--LAG--------------------------------------------LTKLQNLYLSKNHISDL--RALAGLK  197 (605)
T ss_dssp             CCCGG--GTT--------------------------------------------CTTCCEEECCSSCCCBC--GGGTTCT
T ss_pred             CCchh--hcc--------------------------------------------CCCCCEEECcCCCCCCC--hHHccCC
Confidence            64332  222                                            34467777777777643  3567778


Q ss_pred             cCceEeCcCcccccCC
Q 042476          267 GLQTLNLSHNFFVGKI  282 (433)
Q Consensus       267 ~L~~L~Ls~n~l~~~~  282 (433)
                      +|+.|+|++|.+.+..
T Consensus       198 ~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          198 NLDVLELFSQECLNKP  213 (605)
T ss_dssp             TCSEEECCSEEEECCC
T ss_pred             CCCEEEccCCcCcCCc
Confidence            8888888888776543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=1.2e-18  Score=164.81  Aligned_cols=178  Identities=24%  Similarity=0.213  Sum_probs=99.1

Q ss_pred             CEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCcccc-CCCCCcEEECcCccccccCChhhhhcCCCccEEEee
Q 042476           80 QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLK-NCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLR  158 (433)
Q Consensus        80 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  158 (433)
                      +.++++++.+. .+|..+.  +.++.|++++|.+++..+..+. .+++|++|++++|.+. .++...+..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence            46667666666 4554442  3466666666666655555554 5666666666666553 3333323345555555555


Q ss_pred             CccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehh
Q 042476          159 SNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYN  238 (433)
Q Consensus       159 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (433)
                      +|.+....+..+..+++|+.|++++                                                       
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~-------------------------------------------------------  121 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYN-------------------------------------------------------  121 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCS-------------------------------------------------------
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCC-------------------------------------------------------
Confidence            5555544344444444554444444                                                       


Q ss_pred             hhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCccc---CCCCCCCEEeCcCCcCCCCCCccccCCCC
Q 042476          239 SILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI---GNMRSIESLDFSTNRLFGRIPQSMSSLSF  315 (433)
Q Consensus       239 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  315 (433)
                                   |.+++..+..|..+++|+.|+|++|++++..+..+   ..+++|+.|+|++|+++...+..+..++.
T Consensus       122 -------------N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  188 (361)
T 2xot_A          122 -------------NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA  188 (361)
T ss_dssp             -------------SCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCH
T ss_pred             -------------CcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccH
Confidence                         44444445555666666666666666664333333   45667777777777776544455555555


Q ss_pred             --CCeeeCcCCcCccc
Q 042476          316 --LNHLNLSENDLSGQ  329 (433)
Q Consensus       316 --L~~L~L~~n~l~~~  329 (433)
                        ++.|++++|++.+.
T Consensus       189 ~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          189 WVKNGLYLHNNPLECD  204 (361)
T ss_dssp             HHHTTEECCSSCEECC
T ss_pred             hhcceEEecCCCccCC
Confidence              36677777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=6.9e-19  Score=176.53  Aligned_cols=148  Identities=28%  Similarity=0.337  Sum_probs=117.2

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +++|+.|++++|.+... + .+   ..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+.+ +| .+..+++|+
T Consensus        42 L~~L~~L~l~~n~i~~l-~-~l---~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~  112 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSV-Q-GI---QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK  112 (605)
T ss_dssp             HTTCCCCBCTTCCCCCC-T-TG---GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred             CCCCCEEECcCCCCCCC-h-HH---ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence            56788899999888753 2 23   458899999999998886544  7888899999999998884 33 688888999


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN  184 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  184 (433)
                      .|+|++|.+.+.  ..+..+++|+.|+|++|.+.+ + ..+. .+++|+.|+|++|.+.+..|  +..+++|+.|+|++|
T Consensus       113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-C-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             EEEecCCCCCCC--ccccCCCccCEEECCCCccCC-c-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence            999999988853  457888999999999998853 3 3333 78899999999998886544  888889999999998


Q ss_pred             cCcc
Q 042476          185 NLSG  188 (433)
Q Consensus       185 ~~~~  188 (433)
                      .+.+
T Consensus       186 ~i~~  189 (605)
T 1m9s_A          186 HISD  189 (605)
T ss_dssp             CCCB
T ss_pred             CCCC
Confidence            8873

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=4.3e-18  Score=150.29  Aligned_cols=158  Identities=20%  Similarity=0.217  Sum_probs=121.8

Q ss_pred             CcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccc
Q 042476          127 LISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSS  206 (433)
Q Consensus       127 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  206 (433)
                      .+.++.+++.+ ..+|..+   .++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..          
T Consensus        21 ~~~v~c~~~~l-~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRH-ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------   86 (229)
T ss_dssp             TTEEECTTSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred             CCEeEccCCCc-CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence            45566666666 4666544   367777777777777666777777888888888888776333333333          


Q ss_pred             cccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCccc
Q 042476          207 NQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI  286 (433)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l  286 (433)
                                                        +++|+.|+|++|.+++..+..|..+++|+.|+|++|+++ .+|..+
T Consensus        87 ----------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~  131 (229)
T 3e6j_A           87 ----------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI  131 (229)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG
T ss_pred             ----------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc
Confidence                                              344777888888888666777888999999999999998 788888


Q ss_pred             CCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC
Q 042476          287 GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS  333 (433)
Q Consensus       287 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~  333 (433)
                      ..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.++..
T Consensus       132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  178 (229)
T 3e6j_A          132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI  178 (229)
T ss_dssp             GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred             ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence            99999999999999998777778899999999999999999876633

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.8e-18  Score=158.49  Aligned_cols=58  Identities=21%  Similarity=0.445  Sum_probs=32.5

Q ss_pred             ceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCC
Q 042476          243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFG  304 (433)
Q Consensus       243 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  304 (433)
                      +|+.|++++|.+++..+  +..+++|+.|++++|++++ ++ .+..+++|+.|++++|+++.
T Consensus       157 ~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            34555555555543322  5556666666666666653 22 25666666666666666653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.5e-18  Score=158.94  Aligned_cols=80  Identities=21%  Similarity=0.357  Sum_probs=54.0

Q ss_pred             ceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476          243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS  322 (433)
Q Consensus       243 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  322 (433)
                      +|+.|++++|.+++.  ..+..+++|+.|++++|++++..+  +..+++|+.|++++|.+++ ++ .+..+++|+.|+++
T Consensus       135 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~  208 (291)
T 1h6t_A          135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (291)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECc
Confidence            355555555555533  345667777888888887775444  6777788888888887764 33 36777778888888


Q ss_pred             CCcCcc
Q 042476          323 ENDLSG  328 (433)
Q Consensus       323 ~n~l~~  328 (433)
                      +|+++.
T Consensus       209 ~n~i~~  214 (291)
T 1h6t_A          209 SQECLN  214 (291)
T ss_dssp             EEEEEC
T ss_pred             CCcccC
Confidence            777764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=9e-18  Score=144.71  Aligned_cols=152  Identities=14%  Similarity=0.141  Sum_probs=113.6

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +++|++|++++|.++. ++ .+   ..+++|++|++++|.++.  +..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        43 l~~L~~L~l~~n~i~~-l~-~l---~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           43 MNSLTYITLANINVTD-LT-GI---EYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHTCCEEEEESSCCSC-CT-TG---GGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             cCCccEEeccCCCccC-hH-HH---hcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            5678888888888873 33 23   447888888888886652  34677888888888888888876777888888888


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN  184 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  184 (433)
                      +|++++|.+++..+..+..+++|++|++++|...+.++ .+. .+++|++|++++|.+.. ++ .+..+++|+.|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~-~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLK-TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGG-GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhc-CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence            88888888887677778888888888888887325565 333 68888888888888874 33 6777888888888888


Q ss_pred             cCc
Q 042476          185 NLS  187 (433)
Q Consensus       185 ~~~  187 (433)
                      ++.
T Consensus       192 ~i~  194 (197)
T 4ezg_A          192 TIG  194 (197)
T ss_dssp             ---
T ss_pred             ccC
Confidence            765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=1.6e-20  Score=187.22  Aligned_cols=90  Identities=29%  Similarity=0.360  Sum_probs=72.1

Q ss_pred             ccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCC-CccccCCCCCCee
Q 042476          241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRI-PQSMSSLSFLNHL  319 (433)
Q Consensus       241 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L  319 (433)
                      +++|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            344777888888887 677788888888888888888875 56 7888888888888888888776 8888888888888


Q ss_pred             eCcCCcCcccCCCC
Q 042476          320 NLSENDLSGQIPSS  333 (433)
Q Consensus       320 ~L~~n~l~~~~p~~  333 (433)
                      ++++|++++.+|..
T Consensus       539 ~L~~N~l~~~~~~~  552 (567)
T 1dce_A          539 NLQGNSLCQEEGIQ  552 (567)
T ss_dssp             ECTTSGGGGSSSCT
T ss_pred             EecCCcCCCCccHH
Confidence            88888888766644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=1.3e-18  Score=156.93  Aligned_cols=123  Identities=24%  Similarity=0.343  Sum_probs=53.2

Q ss_pred             CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476           53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI  132 (433)
Q Consensus        53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  132 (433)
                      .+++.++++.+.+++..  .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+  +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            33444444444444221  2334444444455444444 222 34444445555555444443222  444444444554


Q ss_pred             cCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476          133 GENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       133 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                      ++|.+. .++...  . ++|++|++++|.+++.  ..+..+++|+.|++++|+++
T Consensus        93 ~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           93 NRNRLK-NLNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             CSSCCS-CCTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred             CCCccC-CcCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence            444442 222211  1 4444555554444421  23444555555555555444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2.4e-17  Score=141.99  Aligned_cols=80  Identities=18%  Similarity=0.290  Sum_probs=45.6

Q ss_pred             eeEEEcccCcccccCCccccCCccCceEeCcCcc-cccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476          244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNF-FVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS  322 (433)
Q Consensus       244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  322 (433)
                      |++|++++|.+++..+..+..+++|++|++++|+ ++ .++ .+..+++|+.|++++|++++ ++ .+..+++|+.|+++
T Consensus       114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAF  189 (197)
T ss_dssp             CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred             CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEee
Confidence            4445555555554444555566666666666665 43 344 45666667777777666654 22 45666667777777


Q ss_pred             CCcCc
Q 042476          323 ENDLS  327 (433)
Q Consensus       323 ~n~l~  327 (433)
                      +|++.
T Consensus       190 ~N~i~  194 (197)
T 4ezg_A          190 SQTIG  194 (197)
T ss_dssp             BC---
T ss_pred             CcccC
Confidence            66654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=1.6e-20  Score=187.31  Aligned_cols=197  Identities=18%  Similarity=0.183  Sum_probs=149.9

Q ss_pred             CCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCc-------------ccccCCccccCCCCCcEEE-CcCccccc
Q 042476           74 MNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNR-------------LAGIFPVSLKNCSSLISLD-IGENDFFG  139 (433)
Q Consensus        74 ~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~~~~  139 (433)
                      ...++|+.|+|++|.+. .+|..++++++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+ .
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-D  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-H
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-c
Confidence            45778888888888887 678888888888888887664             3455667777888888888 565543 1


Q ss_pred             cCChhhh-----h--cCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccc
Q 042476          140 SIPTWVG-----E--RFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI  212 (433)
Q Consensus       140 ~~~~~~~-----~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~  212 (433)
                      .++....     .  ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..                
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------  484 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA----------------  484 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG----------------
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc----------------
Confidence            2221100     0  12368889999998885 565 888889999999999887 66765544                


Q ss_pred             cccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCC-CcccCCCCC
Q 042476          213 YYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKI-PENIGNMRS  291 (433)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~  291 (433)
                                                  +++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..++.+++
T Consensus       485 ----------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~  534 (567)
T 1dce_A          485 ----------------------------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR  534 (567)
T ss_dssp             ----------------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             ----------------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence                                        4457889999999986 56 7899999999999999999776 999999999


Q ss_pred             CCEEeCcCCcCCCCCCcc---ccCCCCCCeeeC
Q 042476          292 IESLDFSTNRLFGRIPQS---MSSLSFLNHLNL  321 (433)
Q Consensus       292 L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L  321 (433)
                      |+.|++++|++++.+|..   +..+++|+.|++
T Consensus       535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999999998765532   344788888864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=2.7e-18  Score=176.38  Aligned_cols=165  Identities=21%  Similarity=0.194  Sum_probs=101.8

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCC--CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNK--SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSS  102 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~  102 (433)
                      .++++.|++..|.+... +..+.....+  ..+..+++..|.+. ..++.|..++.|+.|+|++|.+. .+|..+.++++
T Consensus       172 ~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~  248 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred             CCccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence            45688899988888763 2222110011  11222333334443 45778888999999999999988 67777778999


Q ss_pred             cCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEcc
Q 042476          103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVA  182 (433)
Q Consensus       103 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  182 (433)
                      |++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..+. .+++|++|+|++|.+. .+|..+..+++|+.|+|+
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            999999999998 77888999999999999999985 7888876 7999999999999987 678889999999999999


Q ss_pred             CCcCcccCCCCccc
Q 042476          183 HNNLSGTIPRCINN  196 (433)
Q Consensus       183 ~n~~~~~~p~~~~~  196 (433)
                      +|.+++.+|..+..
T Consensus       325 ~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          325 GNPLEKQFLKILTE  338 (727)
T ss_dssp             TSCCCSHHHHHHHH
T ss_pred             CCccCCCChHHHhh
Confidence            99998777665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.5e-17  Score=150.05  Aligned_cols=80  Identities=18%  Similarity=0.314  Sum_probs=51.6

Q ss_pred             eeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcC
Q 042476          244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSE  323 (433)
Q Consensus       244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  323 (433)
                      |+.|++++|.+++.  ..+..+++|+.|++++|++++. + .+..+++|+.|++++|++++.  ..+..+++|+.|++++
T Consensus       108 L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred             ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence            55566666665532  2356667777777777777643 2 466677777777777777654  4566677777777777


Q ss_pred             CcCccc
Q 042476          324 NDLSGQ  329 (433)
Q Consensus       324 n~l~~~  329 (433)
                      |++++.
T Consensus       182 N~~~~~  187 (263)
T 1xeu_A          182 QKCVNE  187 (263)
T ss_dssp             EEEECC
T ss_pred             CcccCC
Confidence            777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=5.6e-17  Score=139.01  Aligned_cols=91  Identities=19%  Similarity=0.284  Sum_probs=64.7

Q ss_pred             cceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC
Q 042476          242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL  321 (433)
Q Consensus       242 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  321 (433)
                      ++|++|++++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+..+++|+.|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            34566666666666666666777777777777777777666666777777777777777777777777777777777777


Q ss_pred             cCCcCcccCCC
Q 042476          322 SENDLSGQIPS  332 (433)
Q Consensus       322 ~~n~l~~~~p~  332 (433)
                      ++|+++|.++.
T Consensus       134 ~~N~l~c~c~l  144 (192)
T 1w8a_A          134 ASNPFNCNCHL  144 (192)
T ss_dssp             TTCCBCCSGGG
T ss_pred             CCCCccCcCcc
Confidence            77777766553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=4.5e-17  Score=152.02  Aligned_cols=100  Identities=14%  Similarity=0.141  Sum_probs=70.6

Q ss_pred             CCCccEEEccCCccc--ccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCC--------CCCCCEEEccCCcCcccCC
Q 042476           25 PFEFGLLDLSNNALS--GSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMN--------WPHLQVLNLDDNYFTGNLP   94 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~--~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~i~~~~p   94 (433)
                      +++|++|||++|++.  ......      ++.++.+.+..+.   +.+.+|.+        +++|+.++|.+ .++...+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~------~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~  117 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGT------YPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED  117 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSS------SGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT
T ss_pred             hccCeEEecCcceeEEecCcccc------ccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhH
Confidence            567999999999987  222222      3334445555553   33456666        88888888888 7776667


Q ss_pred             cccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcC
Q 042476           95 ISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGE  134 (433)
Q Consensus        95 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  134 (433)
                      .+|.++++|+.|++++|.+..+.+.+|..+.++..+....
T Consensus       118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            7888888888888888888777778888877777776665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=5.3e-17  Score=139.18  Aligned_cols=111  Identities=25%  Similarity=0.346  Sum_probs=65.1

Q ss_pred             CccEEEccCCcccccCCc-cccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476           27 EFGLLDLSNNALSGSIIH-LICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS  105 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~  105 (433)
                      ++++|++++|.+++..+. .+   ..+++|++|++++|++++..|..|.++++|++|+|++|++++..+..|.++++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  106 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLF---GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSG---GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCEEECCCCcCCccCCcccc---ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence            566666666666554432 23   23556666666666666555666666666666666666666555555666666666


Q ss_pred             EEccCCcccccCCccccCCCCCcEEECcCcccccc
Q 042476          106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGS  140 (433)
Q Consensus       106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~  140 (433)
                      |++++|.+++..|..+..+++|++|++++|.+...
T Consensus       107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            66666666655555566666666666666655433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=7.5e-18  Score=173.15  Aligned_cols=150  Identities=17%  Similarity=0.172  Sum_probs=88.1

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCE-----EEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCC
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQV-----LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSS  126 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-----L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  126 (433)
                      .+.++.|+|.+|.+... +..+.....|+.     +++..|.+. ..+..|..+++|+.|+|++|.+. .+|..+..+++
T Consensus       172 ~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~  248 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred             CCccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence            46688899988887753 333322222222     333344444 45778889999999999999988 66767778999


Q ss_pred             CcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccc
Q 042476          127 LISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSS  206 (433)
Q Consensus       127 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  206 (433)
                      |++|+|++|.+. .+|..+. .+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+++
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            999999999985 8888776 7999999999999998 77889999999999999999987 778777776665554444


Q ss_pred             cc
Q 042476          207 NQ  208 (433)
Q Consensus       207 ~~  208 (433)
                      .|
T Consensus       325 ~N  326 (727)
T 4b8c_D          325 GN  326 (727)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=2.1e-16  Score=132.43  Aligned_cols=133  Identities=20%  Similarity=0.177  Sum_probs=71.8

Q ss_pred             CCCccEEEcCCCcCc-CcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEE
Q 042476           52 KSVIISLKLSKNYFS-GDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISL  130 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  130 (433)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+...  ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            345555555555554 44455555555555555555555533  445555556666666655554455555555566666


Q ss_pred             ECcCccccccCCh-hhhhcCCCccEEEeeCccccccCC---ccccCCCCcCEEEccCCcCc
Q 042476          131 DIGENDFFGSIPT-WVGERFPRLLILNLRSNKFNGSLP---VQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       131 ~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~~~  187 (433)
                      ++++|.+. .++. ..+..+++|++|++++|.+.+..+   ..+..+++|+.|++++|.+.
T Consensus       101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            66666552 2221 222245666666666666553332   25556666666666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=2.7e-16  Score=131.75  Aligned_cols=137  Identities=25%  Similarity=0.231  Sum_probs=117.8

Q ss_pred             CCCccEEEccCCccc-ccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCc
Q 042476           25 PFEFGLLDLSNNALS-GSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL  103 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L  103 (433)
                      +++|++|++++|.++ +.+|..+   ..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+.++++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~---~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLT---AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCC---GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             cccCCEEECCCCCCChhhHHHHH---HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            568999999999998 6777766   4589999999999999866  788999999999999999997788888889999


Q ss_pred             CEEEccCCcccccCC-ccccCCCCCcEEECcCccccccCCh---hhhhcCCCccEEEeeCccccccCCc
Q 042476          104 RSLHLRNNRLAGIFP-VSLKNCSSLISLDIGENDFFGSIPT---WVGERFPRLLILNLRSNKFNGSLPV  168 (433)
Q Consensus       104 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~  168 (433)
                      ++|++++|.+++..+ ..+..+++|++|++++|.+. .++.   ..+..+++|++|++++|.+. ..|+
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            999999999986432 67899999999999999995 5555   44558999999999999887 4444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=3.7e-16  Score=128.08  Aligned_cols=126  Identities=21%  Similarity=0.222  Sum_probs=54.1

Q ss_pred             CCccEEEcCCCcCc-CcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           53 SVIISLKLSKNYFS-GDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        53 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34444444444444 33444444444444444444444432  3344444444444444444443444444444444444


Q ss_pred             CcCcccccc-CChhhhhcCCCccEEEeeCccccccCC---ccccCCCCcCEEEc
Q 042476          132 IGENDFFGS-IPTWVGERFPRLLILNLRSNKFNGSLP---VQLCHLTFLRILDV  181 (433)
Q Consensus       132 L~~n~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l  181 (433)
                      +++|.+.+. .+..+. .+++|++|++++|.+++..+   ..+..+++|+.|++
T Consensus        95 ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            444444221 112222 34444444444444443222   23444444444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=2.1e-15  Score=129.17  Aligned_cols=127  Identities=25%  Similarity=0.309  Sum_probs=96.1

Q ss_pred             cEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEc
Q 042476           29 GLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHL  108 (433)
Q Consensus        29 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L  108 (433)
                      +++++++|.++. +|..+     .+++++|++++|.++ .+|..|.++++|++|+|++|.+++..+.+|.++++|++|++
T Consensus        13 ~~l~~~~~~l~~-ip~~~-----~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI-----PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC-----CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCCCc-CCCCC-----CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence            567778877763 44444     457788888888877 56677778888888888888888766677888888888888


Q ss_pred             cCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcccc
Q 042476          109 RNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN  163 (433)
Q Consensus       109 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  163 (433)
                      ++|.+++..+..|..+++|++|++++|.+ ..++...+..+++|+.|++++|.+.
T Consensus        86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCccCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCee
Confidence            88888877777788888888888888887 4666665557788888888888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=5.7e-16  Score=127.00  Aligned_cols=129  Identities=22%  Similarity=0.226  Sum_probs=111.1

Q ss_pred             CCCccEEEccCCccc-ccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCc
Q 042476           25 PFEFGLLDLSNNALS-GSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL  103 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L  103 (433)
                      .++++.|++++|.++ +.+|..+   ..+++|++|++++|.+++.  ..+.++++|++|++++|.+.+.+|..+..+++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLT---DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCC---TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CccCeEEEccCCcCChhHHHHHH---hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            468999999999998 6777766   5589999999999999876  778999999999999999997788888889999


Q ss_pred             CEEEccCCccccc-CCccccCCCCCcEEECcCccccccCCh---hhhhcCCCccEEEeeC
Q 042476          104 RSLHLRNNRLAGI-FPVSLKNCSSLISLDIGENDFFGSIPT---WVGERFPRLLILNLRS  159 (433)
Q Consensus       104 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~L~~  159 (433)
                      ++|++++|.+++. .+..+..+++|++|++++|.+. .++.   ..+..+++|+.|++++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCCC
Confidence            9999999999864 3477899999999999999995 4554   4455899999998763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=2.5e-15  Score=128.74  Aligned_cols=127  Identities=24%  Similarity=0.296  Sum_probs=89.5

Q ss_pred             cEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCc
Q 042476           56 ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN  135 (433)
Q Consensus        56 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  135 (433)
                      +.++++++.++ .+|..+.  ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            56777777776 4454432  46777777777777 56677777777777777777777766677777777777777777


Q ss_pred             cccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476          136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       136 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                      .+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus        89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            774 444444446777777777777777555556777777777777777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=4.9e-15  Score=125.17  Aligned_cols=85  Identities=20%  Similarity=0.205  Sum_probs=38.0

Q ss_pred             CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476           53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI  132 (433)
Q Consensus        53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  132 (433)
                      ++|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            34444444444444433344444444444444444444333333444444444444444444333333444444444444


Q ss_pred             cCccc
Q 042476          133 GENDF  137 (433)
Q Consensus       133 ~~n~~  137 (433)
                      ++|.+
T Consensus       108 ~~N~l  112 (177)
T 2o6r_A          108 DTNQL  112 (177)
T ss_dssp             CSSCC
T ss_pred             cCCcc
Confidence            44444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.61  E-value=5.8e-14  Score=133.93  Aligned_cols=244  Identities=7%  Similarity=0.000  Sum_probs=113.4

Q ss_pred             CccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECc
Q 042476           54 VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIG  133 (433)
Q Consensus        54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  133 (433)
                      +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+....+.+|.++++|+.+++++|.+..+...+|. +.+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            4566665544 444445555553 466666654 44434445566666666666666655544444444 4566666665


Q ss_pred             CccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccc
Q 042476          134 ENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIY  213 (433)
Q Consensus       134 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~  213 (433)
                      .+ + ..++...+.++++|+.+++..+ +......+|.+ .+|+.+.+. +.+...-..+|..|++|+.+.+..+.....
T Consensus       212 ~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          212 VT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             TT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred             Cc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence            33 2 3455555555666666666543 33233344544 456666653 223323334444444444333322110000


Q ss_pred             ccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCC
Q 042476          214 YFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIE  293 (433)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  293 (433)
                                     .........+..+.+|+.+++.+ .++......|.+|.+|+.+.|..+ ++.....+|.++ +|+
T Consensus       287 ---------------~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~  348 (401)
T 4fdw_A          287 ---------------PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK  348 (401)
T ss_dssp             ---------------TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred             ---------------cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence                           00000011122233444444442 233333445555555555555333 433344455555 555


Q ss_pred             EEeCcCCcCCCCCCccccCCC-CCCeeeCcCC
Q 042476          294 SLDFSTNRLFGRIPQSMSSLS-FLNHLNLSEN  324 (433)
Q Consensus       294 ~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n  324 (433)
                      .+++++|.+....+..|..++ .++.+.+..+
T Consensus       349 ~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          349 EVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             EEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             EEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            555555555444444444442 4445554444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=5.6e-15  Score=124.79  Aligned_cols=130  Identities=20%  Similarity=0.228  Sum_probs=109.8

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCE
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV   81 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (433)
                      +++++|.++. +|..    +   .++|++|++++|++++..+..+   ..+++|++|++++|.+++..+..|.++++|++
T Consensus        12 l~~~~~~l~~-~p~~----~---~~~l~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (177)
T 2o6r_A           12 IRCNSKGLTS-VPTG----I---PSSATRLELESNKLQSLPHGVF---DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI   80 (177)
T ss_dssp             EECCSSCCSS-CCTT----C---CTTCSEEECCSSCCCCCCTTTT---TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EEecCCCCcc-CCCC----C---CCCCcEEEeCCCcccEeCHHHh---cCcccccEEECCCCcceEeChhHccCCCccCE
Confidence            6777887773 3421    1   3589999999999997766666   55899999999999999877788899999999


Q ss_pred             EEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCC
Q 042476           82 LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIP  142 (433)
Q Consensus        82 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  142 (433)
                      |++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus        81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999999997777778999999999999999997777778889999999999999865443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=1.1e-14  Score=135.68  Aligned_cols=90  Identities=14%  Similarity=0.108  Sum_probs=79.0

Q ss_pred             hccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCC-EEeCcCCcCCCCCCccccCCCCCCe
Q 042476          240 ILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIE-SLDFSTNRLFGRIPQSMSSLSFLNH  318 (433)
Q Consensus       240 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~  318 (433)
                      .+++|+.+++++|.++...+..|.++.+|++|+|.+| ++...+.+|.++++|+ .+++.+ .++...+..|.+|++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            4788999999999999778888999999999999998 7767778899999999 999998 777677789999999999


Q ss_pred             eeCcCCcCcccCC
Q 042476          319 LNLSENDLSGQIP  331 (433)
Q Consensus       319 L~L~~n~l~~~~p  331 (433)
                      +++++|.++...+
T Consensus       302 l~l~~n~i~~I~~  314 (329)
T 3sb4_A          302 VLATGDKITTLGD  314 (329)
T ss_dssp             EEECSSCCCEECT
T ss_pred             EEeCCCccCccch
Confidence            9999999885443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=2.4e-13  Score=129.74  Aligned_cols=242  Identities=10%  Similarity=0.091  Sum_probs=165.6

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      +..++.+.+.. .++.+...+|.++ +|+.+.+.++ +......+|.+ .+|+.+.+.+ .+..+.+.+|.+|++|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            57788888875 4565677888886 7999999876 66667778988 4799999987 67777888999999999999


Q ss_pred             CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc
Q 042476          132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA  211 (433)
Q Consensus       132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~  211 (433)
                      +..|.+ ..++...+. ..+|+.+.+..+ +......+|.++++|+.+++..+ +...-..+|.+ .+|+.+.+...-  
T Consensus       187 l~~n~l-~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i--  259 (401)
T 4fdw_A          187 LSKTKI-TKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGV--  259 (401)
T ss_dssp             CTTSCC-SEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTC--
T ss_pred             cCCCcc-eEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCc--
Confidence            999988 578888884 799999999854 66566789999999999999875 44344455555 455555442211  


Q ss_pred             ccccccCCceeeecceeeeccceeehhhhccceeEEEcccCccc-----ccCCccccCCccCceEeCcCcccccCCCccc
Q 042476          212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFS-----GEIPMQLTNLEGLQTLNLSHNFFVGKIPENI  286 (433)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l  286 (433)
                                         .......+..+++|+.+++.++.+.     ...+..|.+|++|+.++|. +.++.....+|
T Consensus       260 -------------------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF  319 (401)
T 4fdw_A          260 -------------------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLL  319 (401)
T ss_dssp             -------------------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTT
T ss_pred             -------------------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhh
Confidence                               1111223444566666666665543     2344556666666666666 33554445566


Q ss_pred             CCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCc
Q 042476          287 GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS  327 (433)
Q Consensus       287 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  327 (433)
                      .++++|+.+.+.++ ++......|.++ +|+.+++.+|.+.
T Consensus       320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            66666666666444 444445566666 6666666666443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=1.6e-14  Score=121.77  Aligned_cols=129  Identities=17%  Similarity=0.146  Sum_probs=60.6

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      +++|+.|++++|.++. ++......++|++|++++|.+++.  ..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            4444555555554442 232222222555555555555432  3444555555555555555543333334555555555


Q ss_pred             CcCccccccCCh--hhhhcCCCccEEEeeCccccccCCc----cccCCCCcCEEEccCCcC
Q 042476          132 IGENDFFGSIPT--WVGERFPRLLILNLRSNKFNGSLPV----QLCHLTFLRILDVAHNNL  186 (433)
Q Consensus       132 L~~n~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~~  186 (433)
                      +++|.+ +.+|.  .+. .+++|+.|++++|.+. ..|.    .+..+++|+.||++.|..
T Consensus        95 L~~N~i-~~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           95 LTNNSL-VELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCSCCC-CCGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCcC-CcchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            555555 33333  222 4555555555555554 2233    245555555555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.8e-14  Score=121.59  Aligned_cols=131  Identities=20%  Similarity=0.142  Sum_probs=109.6

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +++|++|++++|++++. +. +.  ...++|+.|++++|.+++.  ..|..+++|++|++++|.+++..+..|..+++|+
T Consensus        18 ~~~L~~L~l~~n~l~~i-~~-~~--~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-EN-LG--ATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-CC-GG--GGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCceEEEeeCCCCchh-HH-hh--hcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            67899999999999854 43 31  2245999999999999965  6789999999999999999965555668999999


Q ss_pred             EEEccCCcccccCCc--cccCCCCCcEEECcCccccccCChh---hhhcCCCccEEEeeCcccc
Q 042476          105 SLHLRNNRLAGIFPV--SLKNCSSLISLDIGENDFFGSIPTW---VGERFPRLLILNLRSNKFN  163 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~L~~n~l~  163 (433)
                      +|++++|.+.. +|.  .+..+++|++|++++|.+. .+|..   ++..+++|+.|++++|...
T Consensus        92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999974 554  7889999999999999994 66765   3448999999999999865

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=1.3e-13  Score=115.43  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=83.5

Q ss_pred             cceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC
Q 042476          242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL  321 (433)
Q Consensus       242 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  321 (433)
                      +.|++|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            34889999999999888999999999999999999999777778899999999999999999877778999999999999


Q ss_pred             cCCcCcccCCCC
Q 042476          322 SENDLSGQIPSS  333 (433)
Q Consensus       322 ~~n~l~~~~p~~  333 (433)
                      ++|++++.++..
T Consensus       110 ~~N~~~c~c~~l  121 (170)
T 3g39_A          110 LNNPWDCACSDI  121 (170)
T ss_dssp             CSSCBCTTBGGG
T ss_pred             CCCCCCCCchhH
Confidence            999999876644

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=2e-13  Score=114.24  Aligned_cols=106  Identities=24%  Similarity=0.204  Sum_probs=77.2

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL  106 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  106 (433)
                      +.+.+++++|.++. +|..+     .+++++|++++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~-----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI-----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEeCCCCcCc-cCccC-----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            35677778777764 44443     4677778888887777777777777778888888877776556667777777888


Q ss_pred             EccCCcccccCCccccCCCCCcEEECcCcccc
Q 042476          107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFF  138 (433)
Q Consensus       107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~  138 (433)
                      ++++|.+++..+..|..+++|++|++++|++.
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            88777777666666777777777777777663

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=4.1e-13  Score=112.74  Aligned_cols=92  Identities=17%  Similarity=0.189  Sum_probs=82.0

Q ss_pred             cceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC
Q 042476          242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL  321 (433)
Q Consensus       242 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  321 (433)
                      +.|+.|++++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            34889999999999888999999999999999999999766677889999999999999998777777999999999999


Q ss_pred             cCCcCcccCCCC
Q 042476          322 SENDLSGQIPSS  333 (433)
Q Consensus       322 ~~n~l~~~~p~~  333 (433)
                      ++|++.+.++..
T Consensus       113 ~~N~~~c~~~~~  124 (174)
T 2r9u_A          113 YNNPWDCECRDI  124 (174)
T ss_dssp             CSSCBCTTBGGG
T ss_pred             CCCCcccccccH
Confidence            999999866543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=5.3e-16  Score=133.65  Aligned_cols=145  Identities=19%  Similarity=0.174  Sum_probs=78.1

Q ss_pred             CccEEEccCCcccccCCc------cccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCC
Q 042476           27 EFGLLDLSNNALSGSIIH------LICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTL  100 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l  100 (433)
                      .++.++++.+.++|..|.      .+   ..+++|++|++++|.+++ +| .+.++++|++|++++|.+. .+|..+..+
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~---~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATL---STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHH---HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHH---hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            455555566666555443      33   235566666666666654 34 5555666666666666665 445555555


Q ss_pred             CCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCCh-hhhhcCCCccEEEeeCccccccCCc----------c
Q 042476          101 SSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPT-WVGERFPRLLILNLRSNKFNGSLPV----------Q  169 (433)
Q Consensus       101 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~  169 (433)
                      ++|++|++++|.+++ +| .+..+++|++|++++|.+. .++. .....+++|++|++++|.+.+..|.          .
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  169 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence            566666666666654 22 3555566666666666552 2222 1222456666666666655543332          1


Q ss_pred             ccCCCCcCEEE
Q 042476          170 LCHLTFLRILD  180 (433)
Q Consensus       170 l~~l~~L~~L~  180 (433)
                      +..+++|+.||
T Consensus       170 ~~~l~~L~~Ld  180 (198)
T 1ds9_A          170 VKRLPNLKKLD  180 (198)
T ss_dssp             HHHCSSCSEEC
T ss_pred             HHhCCCcEEEC
Confidence            44555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=6.9e-13  Score=111.39  Aligned_cols=104  Identities=24%  Similarity=0.219  Sum_probs=74.1

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476           28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH  107 (433)
Q Consensus        28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~  107 (433)
                      -+.+++++|.++ .+|..+     .++|++|++++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus        14 ~~~l~~~~n~l~-~iP~~~-----~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGI-----PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcEEEeCCCCCC-ccCCCc-----CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence            357777777775 345444     36777777777777777777777777777777777777755555567777777777


Q ss_pred             ccCCcccccCCccccCCCCCcEEECcCccc
Q 042476          108 LRNNRLAGIFPVSLKNCSSLISLDIGENDF  137 (433)
Q Consensus       108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  137 (433)
                      +++|.+.+..+..|..+++|++|++++|++
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             CCCCccceeCHHHhccccCCCEEEeCCCCc
Confidence            777777765555577777777777777776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=8.1e-16  Score=132.50  Aligned_cols=147  Identities=20%  Similarity=0.212  Sum_probs=121.5

Q ss_pred             CCCccEEEcCCCcCcCcCCc------ccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCC
Q 042476           52 KSVIISLKLSKNYFSGDIPD------CWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCS  125 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  125 (433)
                      ...++.++++.+.+.+..|.      .|..+++|++|++++|.+.+ +| .+.++++|++|++++|.+. .+|..+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            45666677777777766665      88999999999999999995 67 8889999999999999998 5677788889


Q ss_pred             CCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCC-ccccCCCCcCEEEccCCcCcccCCCC----------c
Q 042476          126 SLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP-VQLCHLTFLRILDVAHNNLSGTIPRC----------I  194 (433)
Q Consensus       126 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~----------~  194 (433)
                      +|++|++++|.+. .+| .+. .+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..|..          +
T Consensus        94 ~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           94 TLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             cCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            9999999999995 455 444 78999999999999985322 47889999999999999998665543          6


Q ss_pred             cccccccccc
Q 042476          195 NNFTAMATIN  204 (433)
Q Consensus       195 ~~l~~L~~L~  204 (433)
                      ..+++|+.|+
T Consensus       171 ~~l~~L~~Ld  180 (198)
T 1ds9_A          171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCSEEC
T ss_pred             HhCCCcEEEC
Confidence            7788888876

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.41  E-value=7.2e-12  Score=119.71  Aligned_cols=83  Identities=8%  Similarity=0.016  Sum_probs=52.6

Q ss_pred             hhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCC
Q 042476          238 NSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLN  317 (433)
Q Consensus       238 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  317 (433)
                      +..+.+|+.+.+..+ ++.....+|.++.+|+++++..+ ++.....+|.++.+|+.+++..+ ++..-...|.+|.+|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            344566777776544 43344556777777777777543 55445566777777777777665 5444555677777777


Q ss_pred             eeeCcC
Q 042476          318 HLNLSE  323 (433)
Q Consensus       318 ~L~L~~  323 (433)
                      .+++..
T Consensus       370 ~i~lp~  375 (394)
T 4fs7_A          370 KVELPK  375 (394)
T ss_dssp             EEEEEG
T ss_pred             EEEECC
Confidence            777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.29  E-value=7.2e-11  Score=112.74  Aligned_cols=282  Identities=10%  Similarity=0.001  Sum_probs=155.9

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCC-----------------
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDN-----------------   87 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-----------------   87 (433)
                      +.+|+.+.+..+ ++.....+|   .++.+|+.+++..+ ++.+...+|.++..|+.+.+..+                 
T Consensus        70 c~~L~~i~lp~~-i~~I~~~aF---~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~  144 (394)
T 4fs7_A           70 CRKVTEIKIPST-VREIGEFAF---ENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI  144 (394)
T ss_dssp             CTTEEEEECCTT-CCEECTTTT---TTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred             CCCceEEEeCCC-ccCcchhHh---hCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence            667888887643 554445555   45777888877644 44344556666665555444321                 


Q ss_pred             ----cCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccc-
Q 042476           88 ----YFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKF-  162 (433)
Q Consensus        88 ----~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-  162 (433)
                          ........+|.++++|+.+.+.++. ..+...+|.++.+|+.+++..+ + ..+....+..+..|+.+.+..+.. 
T Consensus       145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~-~~I~~~~F~~~~~L~~i~~~~~~~~  221 (394)
T 4fs7_A          145 TIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-L-KIIRDYCFAECILLENMEFPNSLYY  221 (394)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-C-CEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred             ccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-c-eEeCchhhccccccceeecCCCceE
Confidence                0111223456777778877776553 3355566777777777777655 2 344444444455555544433221 


Q ss_pred             --------------------cccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCcee
Q 042476          163 --------------------NGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIV  222 (433)
Q Consensus       163 --------------------~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  222 (433)
                                          ......++..+..++.+.+..+... .....+..+..++.............+.......
T Consensus       222 i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~  300 (394)
T 4fs7_A          222 LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLT  300 (394)
T ss_dssp             ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred             eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecccccccccccc
Confidence                                1112234455556666666544332 2333444444444432221110000000000000


Q ss_pred             eecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcC
Q 042476          223 FEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRL  302 (433)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  302 (433)
                      ...+.......-...+..+.+|+.+++..+ ++..-..+|.+|.+|+++++..+ ++.....+|.++++|+.+++..+- 
T Consensus       301 ~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-  377 (394)
T 4fs7_A          301 EVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-  377 (394)
T ss_dssp             EEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-
T ss_pred             ccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-
Confidence            000000011111234566888999999754 55566778999999999999876 665667889999999999998652 


Q ss_pred             CCCCCccccCCCCCCee
Q 042476          303 FGRIPQSMSSLSFLNHL  319 (433)
Q Consensus       303 ~~~~~~~l~~l~~L~~L  319 (433)
                       ..+...|.++++|+.+
T Consensus       378 -~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          378 -EQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             -GGGGGGBCTTCEEEEE
T ss_pred             -EEhhheecCCCCCcEE
Confidence             2344578888888764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=9.1e-14  Score=131.31  Aligned_cols=65  Identities=18%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             cCCccCceEeCcCcccccC----CCcccCCCCCCCEEeCcCCcCCCC----CCccccCCCCCCeeeCcCCcCc
Q 042476          263 TNLEGLQTLNLSHNFFVGK----IPENIGNMRSIESLDFSTNRLFGR----IPQSMSSLSFLNHLNLSENDLS  327 (433)
Q Consensus       263 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  327 (433)
                      ..+++|++|+|++|.+++.    ++..+...++|+.|+|++|.++..    ++..+..+++|+.|+|++|+++
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            3344555555555554422    123334445555555555555432    2223334455555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=3.3e-13  Score=127.44  Aligned_cols=164  Identities=15%  Similarity=0.126  Sum_probs=113.1

Q ss_pred             CCCccEEEccCCcccccCCccccCC--CCCCCccEEEcCCCcCcCcCCccc-CCCCCCCEEEccCCcCcccCCccc----
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNG--DNKSVIISLKLSKNYFSGDIPDCW-MNWPHLQVLNLDDNYFTGNLPISI----   97 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~p~~~----   97 (433)
                      +++|++|++++|.+++.....+...  ...++|++|+|++|.+.......+ ..+++|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3578899999998876544443221  224689999999998864322222 235678899999998875444343    


Q ss_pred             -CCCCCcCEEEccCCccccc----CCccccCCCCCcEEECcCcccccc----CChhhhhcCCCccEEEeeCcccccc---
Q 042476           98 -GTLSSLRSLHLRNNRLAGI----FPVSLKNCSSLISLDIGENDFFGS----IPTWVGERFPRLLILNLRSNKFNGS---  165 (433)
Q Consensus        98 -~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~---  165 (433)
                       ...++|++|++++|.++..    ++..+..+++|++|+|++|.+.+.    +...+. ..++|++|+|++|.++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-GCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-cCCCcCeEECCCCCCCHHHHH
Confidence             3567899999999988642    344457788899999999987432    122232 567899999999988742   


Q ss_pred             -CCccccCCCCcCEEEccCCcCccc
Q 042476          166 -LPVQLCHLTFLRILDVAHNNLSGT  189 (433)
Q Consensus       166 -~~~~l~~l~~L~~L~l~~n~~~~~  189 (433)
                       +...+...++|++|++++|.+++.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHH
Confidence             334455678899999999988643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=3.2e-11  Score=113.11  Aligned_cols=89  Identities=20%  Similarity=0.170  Sum_probs=75.9

Q ss_pred             cceeEEEccc-CcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeee
Q 042476          242 NLVRSIDISK-NNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLN  320 (433)
Q Consensus       242 ~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  320 (433)
                      .+|+.|+|++ |.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..++ |+.|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            3478888986 888877778899999999999999999988888899999999999999999877666776665 99999


Q ss_pred             CcCCcCcccCC
Q 042476          321 LSENDLSGQIP  331 (433)
Q Consensus       321 L~~n~l~~~~p  331 (433)
                      |.+|++.+.+.
T Consensus       110 l~~N~~~c~c~  120 (347)
T 2ifg_A          110 LSGNPLHCSCA  120 (347)
T ss_dssp             CCSSCCCCCGG
T ss_pred             eeCCCccCCCc
Confidence            99999987543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.18  E-value=1.9e-09  Score=102.77  Aligned_cols=80  Identities=13%  Similarity=0.143  Sum_probs=34.6

Q ss_pred             hccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCee
Q 042476          240 ILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHL  319 (433)
Q Consensus       240 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  319 (433)
                      .+..|+.+.+..+... .....|.++.+|+.+.+. +.++.....+|.++.+|+.+++..+ ++..-...|.+|.+|+.+
T Consensus       263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence            3444555555433221 223344445555555553 2233233344444555555555432 322233344455555555


Q ss_pred             eCc
Q 042476          320 NLS  322 (433)
Q Consensus       320 ~L~  322 (433)
                      .+.
T Consensus       340 ~ip  342 (394)
T 4gt6_A          340 AIP  342 (394)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=7.5e-11  Score=110.60  Aligned_cols=102  Identities=17%  Similarity=0.112  Sum_probs=65.5

Q ss_pred             EEEccCC-cccccCCccccCCCCCCCccEEEcCC-CcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476           30 LLDLSNN-ALSGSIIHLICNGDNKSVIISLKLSK-NYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH  107 (433)
Q Consensus        30 ~L~l~~n-~l~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~  107 (433)
                      .++.+++ ++++ +|. +   ..+++|+.|+|++ |.+++..+..|.++++|++|+|++|++++..|.+|.++++|++|+
T Consensus        12 ~v~~~~~n~l~~-ip~-l---~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-L---PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             CEECCSSCCCTT-TTT-S---CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             EEEcCCCCCCCc-cCC-C---CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence            4566666 6654 444 4   3366677777764 666666666666777777777777777766666666777777777


Q ss_pred             ccCCcccccCCccccCCCCCcEEECcCccc
Q 042476          108 LRNNRLAGIFPVSLKNCSSLISLDIGENDF  137 (433)
Q Consensus       108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  137 (433)
                      |++|.+++..+..+..++ |+.|++.+|.+
T Consensus        87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             CCCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence            777777655555555444 67777766665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.11  E-value=4.7e-09  Score=100.08  Aligned_cols=267  Identities=8%  Similarity=0.081  Sum_probs=172.8

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCc---CcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCc
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNY---FSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL  103 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L  103 (433)
                      .|+.+.+..+ ++.....+|   .++.+|+.+.+..+.   ++.+-..+|.++.+|+.+.+..+ ++.....+|.++.+|
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF---~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L  139 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAF---YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL  139 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTT---TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred             cCEEEEECCC-eeEEhHHHh---hCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence            4788887654 555555666   558888888887653   55556677888888888777554 443556678888888


Q ss_pred             CEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccC
Q 042476          104 RSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAH  183 (433)
Q Consensus       104 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  183 (433)
                      +.+.+..+ +..+....|..+..|+.+.+..+-  ..+....+ ...+|+.+.+..+-.. ....++..+.++.......
T Consensus       140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~--~~I~~~aF-~~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~  214 (394)
T 4gt6_A          140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSV--TAIEERAF-TGTALTQIHIPAKVTR-IGTNAFSECFALSTITSDS  214 (394)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEECCTTC--CEECTTTT-TTCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECC
T ss_pred             ccccccce-eeeecccceeccccccccccccee--eEeccccc-cccceeEEEECCcccc-cccchhhhccccceecccc
Confidence            88888754 344566677788888888887652  34555555 3456777776544322 2334455555555444322


Q ss_pred             Cc------------------------------------CcccCCCCccccccccccccccccccccccccCCceeeecce
Q 042476          184 NN------------------------------------LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDAS  227 (433)
Q Consensus       184 n~------------------------------------~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  227 (433)
                      +.                                    +...-..+|..+..|+.+.+.....                 
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-----------------  277 (394)
T 4gt6_A          215 ESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-----------------  277 (394)
T ss_dssp             SSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-----------------
T ss_pred             cccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-----------------
Confidence            11                                    1111223455666666665443210                 


Q ss_pred             eeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCC
Q 042476          228 VVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIP  307 (433)
Q Consensus       228 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  307 (433)
                          ..-...+..+..|+.+.+.. .++......|.++.+|++++|..+ ++.....+|.++.+|+.+.+..+ ++..-.
T Consensus       278 ----~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~  350 (394)
T 4gt6_A          278 ----SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE  350 (394)
T ss_dssp             ----EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred             ----eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence                11122344577888888863 455456678899999999999764 65556678999999999999765 655556


Q ss_pred             ccccCCCCCCeeeCcCCcCc
Q 042476          308 QSMSSLSFLNHLNLSENDLS  327 (433)
Q Consensus       308 ~~l~~l~~L~~L~L~~n~l~  327 (433)
                      ..|.+|.+|+.+++.++...
T Consensus       351 ~aF~~C~~L~~i~~~~~~~~  370 (394)
T 4gt6_A          351 SAFSNCTALNNIEYSGSRSQ  370 (394)
T ss_dssp             GGGTTCTTCCEEEESSCHHH
T ss_pred             hHhhCCCCCCEEEECCceee
Confidence            78999999999999887543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=4.3e-10  Score=105.33  Aligned_cols=83  Identities=11%  Similarity=0.236  Sum_probs=50.4

Q ss_pred             ccceeEEEcccCcccccCCccc---cCCccCceEeCcCcccccCC----CcccCCCCCCCEEeCcCCcCCCCCCccccC-
Q 042476          241 LNLVRSIDISKNNFSGEIPMQL---TNLEGLQTLNLSHNFFVGKI----PENIGNMRSIESLDFSTNRLFGRIPQSMSS-  312 (433)
Q Consensus       241 ~~~L~~L~L~~n~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-  312 (433)
                      +++|+.|++.+|.++...+..+   ..+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.++......+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            4567777777776653222111   24678888888888876542    333345678888888888776543333332 


Q ss_pred             CCCCCeeeCcCCc
Q 042476          313 LSFLNHLNLSEND  325 (433)
Q Consensus       313 l~~L~~L~L~~n~  325 (433)
                      +  ...+++++++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3457777766

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=5.9e-10  Score=104.38  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=46.7

Q ss_pred             CCccCceEeCcCcccccCCCccc---CCCCCCCEEeCcCCcCCCC----CCccccCCCCCCeeeCcCCcCcc
Q 042476          264 NLEGLQTLNLSHNFFVGKIPENI---GNMRSIESLDFSTNRLFGR----IPQSMSSLSFLNHLNLSENDLSG  328 (433)
Q Consensus       264 ~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~  328 (433)
                      .+++|+.|+|++|.+.+..+..+   ..+++|+.|+|+.|.+++.    ++..+..+++|+.|++++|.++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            46889999998888764433222   3578899999998888653    33334567889999999887763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.87  E-value=3.3e-07  Score=86.71  Aligned_cols=123  Identities=9%  Similarity=0.017  Sum_probs=62.7

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      ..+|+.+.+.. .++.....+|   .++.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +......+|.+ .+|+
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF---~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~  116 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANF---NSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD  116 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTT---TTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred             ccCCEEEEeCC-CccChHHHHh---hCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence            44566666643 2443444445   44677777777543 554555666665 4666665433 33334445554 3677


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS  159 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  159 (433)
                      .+.+..+ +..+-..+|.++ +++...+..+-  ..+....+..+.+++.+.+..
T Consensus       117 ~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~v--~~i~~~~f~~~~~l~~~~~~~  167 (379)
T 4h09_A          117 DFEFPGA-TTEIGNYIFYNS-SVKRIVIPKSV--TTIKDGIGYKAENLEKIEVSS  167 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTC-CCCEEEECTTC--CEECSCTTTTCTTCCEEEECT
T ss_pred             cccCCCc-cccccccccccc-eeeeeecccee--eccccchhccccccccccccc
Confidence            7777654 232333344443 44444444321  133333333556666655544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.71  E-value=1.6e-06  Score=82.02  Aligned_cols=264  Identities=6%  Similarity=-0.034  Sum_probs=162.0

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +.+|+.+++..+ ++.....+|   .++ +|+.+.+..+ ++.+...+|.+. +|+.+.+..+- ......+|.+. +|+
T Consensus        68 C~~L~~I~lp~~-v~~Ig~~aF---~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~-~~i~~~~F~~~-~l~  138 (379)
T 4h09_A           68 CYNMTKVTVAST-VTSIGDGAF---ADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT-TEIGNYIFYNS-SVK  138 (379)
T ss_dssp             CTTCCEEEECTT-CCEECTTTT---TTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC-CEECTTTTTTC-CCC
T ss_pred             CCCCCEEEeCCc-ceEechhhh---cCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc-ccccccccccc-eee
Confidence            789999999754 655555555   333 6788777644 554556677664 79999997653 32445566554 677


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCCh-----------hhhhcCCCccEEEeeCccccccCCccccCC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPT-----------WVGERFPRLLILNLRSNKFNGSLPVQLCHL  173 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  173 (433)
                      .+.+..+ ++.+....|..+..++...+..+........           ..+.....+..+.+....- ......+...
T Consensus       139 ~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~  216 (379)
T 4h09_A          139 RIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYG  216 (379)
T ss_dssp             EEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTC
T ss_pred             eeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EEeecccccc
Confidence            7776654 4445666778888888877765432111000           0011233444444433221 1334456667


Q ss_pred             CCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCc
Q 042476          174 TFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNN  253 (433)
Q Consensus       174 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  253 (433)
                      .+|+.+.+..+ +......++..+..|+.+.+..+-.                     ..-...+..+..|+.+.+..+ 
T Consensus       217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~---------------------~I~~~aF~~~~~l~~i~l~~~-  273 (379)
T 4h09_A          217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVT---------------------SIGSFLLQNCTALKTLNFYAK-  273 (379)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCC---------------------EECTTTTTTCTTCCEEEECCC-
T ss_pred             cccceeeeccc-eeEEccccccCCccceEEEcCCCcc---------------------EeCccccceeehhcccccccc-
Confidence            77777777544 2223444566666666655433210                     001122344566777777544 


Q ss_pred             ccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcC
Q 042476          254 FSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSE  323 (433)
Q Consensus       254 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  323 (433)
                      +.......|.++.+|+++.+.++.++.....+|.++.+|+.+++.++ ++..-...|.+|.+|+.+.+..
T Consensus       274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          274 VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            44345567888999999999888887666778889999999999765 5545556788999999887753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.54  E-value=8.2e-09  Score=87.22  Aligned_cols=114  Identities=15%  Similarity=0.177  Sum_probs=68.2

Q ss_pred             CCCCCccEEEcCCC-cCcCc----CCcccCCCCCCCEEEccCCcCccc----CCcccCCCCCcCEEEccCCccccc----
Q 042476           50 DNKSVIISLKLSKN-YFSGD----IPDCWMNWPHLQVLNLDDNYFTGN----LPISIGTLSSLRSLHLRNNRLAGI----  116 (433)
Q Consensus        50 ~~~~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----  116 (433)
                      ...+.|++|+|++| .+...    +...+...+.|++|+|++|.+...    +...+...++|++|+|++|.+...    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            33566777777776 65521    334445566777777777776532    233444556777777777776632    


Q ss_pred             CCccccCCCCCcEEEC--cCccccccCChhhh---hcCCCccEEEeeCcccc
Q 042476          117 FPVSLKNCSSLISLDI--GENDFFGSIPTWVG---ERFPRLLILNLRSNKFN  163 (433)
Q Consensus       117 ~~~~~~~l~~L~~L~L--~~n~~~~~~~~~~~---~~l~~L~~L~L~~n~l~  163 (433)
                      +...+...+.|++|++  ++|.+...-...+.   ...++|++|++++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3445566677777777  66766432211111   24567788888777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=9.4e-08  Score=80.66  Aligned_cols=118  Identities=18%  Similarity=0.156  Sum_probs=79.3

Q ss_pred             CCcccCCCCCCCEEEccCC-cCccc----CCcccCCCCCcCEEEccCCccccc----CCccccCCCCCcEEECcCccccc
Q 042476           69 IPDCWMNWPHLQVLNLDDN-YFTGN----LPISIGTLSSLRSLHLRNNRLAGI----FPVSLKNCSSLISLDIGENDFFG  139 (433)
Q Consensus        69 ~~~~~~~l~~L~~L~L~~n-~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~  139 (433)
                      +...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3345566788888888888 77632    345566677888888888887642    33445566788888888888743


Q ss_pred             c----CChhhhhcCCCccEEEe--eCcccccc----CCccccCCCCcCEEEccCCcCc
Q 042476          140 S----IPTWVGERFPRLLILNL--RSNKFNGS----LPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       140 ~----~~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                      .    +...+. ..++|++|++  ++|.+...    +...+...++|++|++++|.+.
T Consensus       108 ~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3    222222 4567888888  77877633    3345556678888888888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.25  E-value=9.9e-07  Score=78.31  Aligned_cols=80  Identities=23%  Similarity=0.233  Sum_probs=43.3

Q ss_pred             CCCCCcCEEEccCCcccc--cCCccccCCCCCcEEECcCccccccCChhhhhcCC--CccEEEeeCccccccCCc-----
Q 042476           98 GTLSSLRSLHLRNNRLAG--IFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP--RLLILNLRSNKFNGSLPV-----  168 (433)
Q Consensus        98 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~-----  168 (433)
                      .++++|+.|+|++|.+++  .+|..+..+++|+.|+|++|.+.+.  ..+. .+.  +|++|+|++|.+.+.+|.     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~-~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD-KIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG-GGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh-hcccCCcceEEccCCcCccccCcchhHH
Confidence            345666666666666664  2334455666666666666666322  1111 222  666666666666544431     


Q ss_pred             --cccCCCCcCEEE
Q 042476          169 --QLCHLTFLRILD  180 (433)
Q Consensus       169 --~l~~l~~L~~L~  180 (433)
                        .+..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence              245566666664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=7.1e-07  Score=79.27  Aligned_cols=81  Identities=28%  Similarity=0.400  Sum_probs=60.4

Q ss_pred             CCCCCCCEEEccCCcCcc--cCCcccCCCCCcCEEEccCCcccccCCccccCCC--CCcEEECcCccccccCCh------
Q 042476           74 MNWPHLQVLNLDDNYFTG--NLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCS--SLISLDIGENDFFGSIPT------  143 (433)
Q Consensus        74 ~~l~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~------  143 (433)
                      .++++|+.|+|++|.+.+  .+|..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++++|++.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            467888999999998886  3456667888999999999988865  2344444  889999999988765552      


Q ss_pred             hhhhcCCCccEEE
Q 042476          144 WVGERFPRLLILN  156 (433)
Q Consensus       144 ~~~~~l~~L~~L~  156 (433)
                      .+...+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            3345788998886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.09  E-value=4.9e-07  Score=74.56  Aligned_cols=83  Identities=12%  Similarity=0.130  Sum_probs=67.3

Q ss_pred             ceeEEEcccCcccccCCccccCCccCceEeCcCcc-cccCCCcccCCC----CCCCEEeCcCCc-CCCCCCccccCCCCC
Q 042476          243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNF-FVGKIPENIGNM----RSIESLDFSTNR-LFGRIPQSMSSLSFL  316 (433)
Q Consensus       243 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~L  316 (433)
                      .|+.||+++|.++..--..+.++++|++|+|++|. +++..-..+..+    ++|++|+|++|. +|..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            59999999999886656667899999999999995 776655556654    479999999985 776544556789999


Q ss_pred             CeeeCcCCc
Q 042476          317 NHLNLSEND  325 (433)
Q Consensus       317 ~~L~L~~n~  325 (433)
                      +.|++++|+
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999986

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=5.5e-06  Score=68.23  Aligned_cols=14  Identities=21%  Similarity=0.221  Sum_probs=6.5

Q ss_pred             cCCCCcCEEEccCC
Q 042476          171 CHLTFLRILDVAHN  184 (433)
Q Consensus       171 ~~l~~L~~L~l~~n  184 (433)
                      .++++|++|++++|
T Consensus       136 ~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          136 HHFRNLKYLFLSDL  149 (176)
T ss_dssp             GGCTTCCEEEEESC
T ss_pred             hcCCCCCEEECCCC
Confidence            34444444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.54  E-value=1.6e-05  Score=66.80  Aligned_cols=110  Identities=16%  Similarity=0.157  Sum_probs=54.0

Q ss_pred             CCCccEEEcCCC-cCcC----cCCcccCCCCCCCEEEccCCcCccc----CCcccCCCCCcCEEEccCCccccc----CC
Q 042476           52 KSVIISLKLSKN-YFSG----DIPDCWMNWPHLQVLNLDDNYFTGN----LPISIGTLSSLRSLHLRNNRLAGI----FP  118 (433)
Q Consensus        52 ~~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~  118 (433)
                      -+.|++|+|+++ .|..    .+.+++..-..|+.|+|++|.+...    +.+++..-+.|++|+|++|.|...    +.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            455666666653 4432    1233344445666666666666532    223334445666666666666532    22


Q ss_pred             ccccCCCCCcEEECcCc---ccccc----CChhhhhcCCCccEEEeeCccc
Q 042476          119 VSLKNCSSLISLDIGEN---DFFGS----IPTWVGERFPRLLILNLRSNKF  162 (433)
Q Consensus       119 ~~~~~l~~L~~L~L~~n---~~~~~----~~~~~~~~l~~L~~L~L~~n~l  162 (433)
                      .++..-+.|++|+|+++   .+...    +...+ ..-+.|+.|+++.+..
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCCc
Confidence            33444555666666543   22111    11111 2345666666665543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.26  E-value=0.00066  Score=53.07  Aligned_cols=59  Identities=15%  Similarity=0.182  Sum_probs=41.9

Q ss_pred             eEeCcCcccc-cCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccC
Q 042476          270 TLNLSHNFFV-GKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQI  330 (433)
Q Consensus       270 ~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  330 (433)
                      .++-+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence            5666777664 34554432  46888888888887766677788888888888888887643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.99  E-value=0.00032  Score=58.86  Aligned_cols=115  Identities=9%  Similarity=0.100  Sum_probs=75.5

Q ss_pred             ccCCCCCCCEEEccCC-cCccc----CCcccCCCCCcCEEEccCCccccc----CCccccCCCCCcEEECcCccccccCC
Q 042476           72 CWMNWPHLQVLNLDDN-YFTGN----LPISIGTLSSLRSLHLRNNRLAGI----FPVSLKNCSSLISLDIGENDFFGSIP  142 (433)
Q Consensus        72 ~~~~l~~L~~L~L~~n-~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~  142 (433)
                      .+.+-+.|++|+|++| .+...    +.+++..-+.|+.|+|++|.+...    +...+..-+.|++|+|++|.+...--
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3445678999999885 76532    445677778899999999988743    33445567889999999998854333


Q ss_pred             hhhhh---cCCCccEEEeeCcc---ccc----cCCccccCCCCcCEEEccCCcC
Q 042476          143 TWVGE---RFPRLLILNLRSNK---FNG----SLPVQLCHLTFLRILDVAHNNL  186 (433)
Q Consensus       143 ~~~~~---~l~~L~~L~L~~n~---l~~----~~~~~l~~l~~L~~L~l~~n~~  186 (433)
                      ..+.+   .-+.|++|+|+++.   +..    .+...+..-+.|+.|+++.|.+
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            33332   23468888887653   231    1334555667788888876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.83  E-value=0.0023  Score=49.94  Aligned_cols=36  Identities=22%  Similarity=0.229  Sum_probs=17.1

Q ss_pred             CccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcC
Q 042476           54 VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYF   89 (433)
Q Consensus        54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i   89 (433)
                      ++++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            444455555554444444444444444444444444

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=90.85  E-value=0.088  Score=31.66  Aligned_cols=27  Identities=19%  Similarity=0.127  Sum_probs=14.3

Q ss_pred             hhhhhhhhhhhhHhhhhheecccccch
Q 042476          387 ASMALGFVVGFWCFIGPLLVNRRWRYK  413 (433)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (433)
                      .+++.|++++++++++.++++||++.+
T Consensus        15 ~gVVgGv~~~~ii~~~~~~~~RRr~~~   41 (44)
T 2ks1_B           15 TGMVGALLLLLVVALGIGLFMRRRHIV   41 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             eehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence            333444555555555556666666544

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=90.57  E-value=0.059  Score=32.27  Aligned_cols=29  Identities=14%  Similarity=0.011  Sum_probs=17.1

Q ss_pred             hhhhhhhhhhhhhhHhhhhheecccccch
Q 042476          385 LYASMALGFVVGFWCFIGPLLVNRRWRYK  413 (433)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (433)
                      .+.+.++|+++++++.++.++|.||++++
T Consensus        13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~~~   41 (44)
T 2jwa_A           13 SIISAVVGILLVVVLGVVFGILIKRRQQK   41 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             chHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence            45666666555555555556666666554

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=90.47  E-value=0.094  Score=31.45  Aligned_cols=28  Identities=18%  Similarity=0.014  Sum_probs=15.1

Q ss_pred             hhhhhhhhhhhhHhhhhheecccccchh
Q 042476          387 ASMALGFVVGFWCFIGPLLVNRRWRYKY  414 (433)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (433)
                      .+++.|++++++++.+.++++||++++-
T Consensus        14 ~gVVgGv~~v~ii~~~~~~~~RRRr~~~   41 (44)
T 2l2t_A           14 AGVIGGLFILVIVGLTFAVYVRRKSIKK   41 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred             EeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            3334445555555555566667665543

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=88.27  E-value=0.24  Score=28.72  Aligned_cols=21  Identities=19%  Similarity=0.422  Sum_probs=12.5

Q ss_pred             hhhhhhhhhhhhhhHhhhhhe
Q 042476          385 LYASMALGFVVGFWCFIGPLL  405 (433)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~  405 (433)
                      .+.++++|+++++.++++..+
T Consensus        12 aIAGiVvG~v~gv~li~~l~~   32 (38)
T 2k1k_A           12 EIVAVIFGLLLGAALLLGILV   32 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeehHHHHHHHHHHHHHH
Confidence            567777777666555444433

>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1

Probab=82.60  E-value=0.4  Score=27.04  Aligned_cols=25  Identities=8%  Similarity=0.082  Sum_probs=12.6

Q ss_pred             hhhhhhhhhhhhhHhhhhheecccc
Q 042476          386 YASMALGFVVGFWCFIGPLLVNRRW  410 (433)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~  410 (433)
                      +.+.++|+++++++..++.+|+||+
T Consensus        10 IaagVvglll~vii~l~~~~~iRRr   34 (35)
T 1iij_A           10 IIATVVGVLLFLILVVVVGILIKRR   34 (35)
T ss_dssp             HHHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred             eHHHHHHHHHHHHHHHHhheEEeec
Confidence            3444555444444445555566654

>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}

Probab=81.62  E-value=0.34  Score=26.71  Aligned_cols=25  Identities=32%  Similarity=0.377  Sum_probs=17.6

Q ss_pred             hhhhhhhhhhhhHhhhhheeccccc
Q 042476          387 ASMALGFVVGFWCFIGPLLVNRRWR  411 (433)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~  411 (433)
                      +.+++|.++++.++.+.++|||-+|
T Consensus        10 lt~i~gl~vif~~lg~tflywrgrr   34 (40)
T 2l9u_A           10 LTVIAGLVVIFMMLGGTFLYWRGRR   34 (40)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCceeEEEcccc
Confidence            3456677777777777888887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	433
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.3 bits (194), Expect = 8e-17
 Identities = 58/329 (17%), Positives = 118/329 (35%), Gaps = 20/329 (6%)

Query: 1   ELNLSNNQIYGVIPYFDHRPL-----PYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVI 55
           ++N SNNQ+  + P  +   L                 +   L+G  +      D   + 
Sbjct: 70  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 56  ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAG 115
               L++   S +          L  L              +  L++L  L + +N+++ 
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 116 IFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTF 175
           I  ++    ++L SL    N      P         L  L+L  N+        L  LT 
Sbjct: 190 ISVLA--KLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTN 242

Query: 176 LRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLV 235
           L  LD+A+N +S   P  ++  T +  +     + +    +     +        +   +
Sbjct: 243 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 236 EYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESL 295
              S L  +  + +  NN S   P  +++L  LQ L  ++N        ++ N+ +I  L
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWL 356

Query: 296 DFSTNRLFGRIPQSMSSLSFLNHLNLSEN 324
               N++    P  +++L+ +  L L++ 
Sbjct: 357 SAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 20/276 (7%)

Query: 56  ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAG 115
           +   L K   +  +     +   +  L  D      ++   +  L++L  ++  NN+L  
Sbjct: 25  MKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD 80

Query: 116 IFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTF 175
           I P  LKN + L+ + +  N      P         L + N +    +    +   +   
Sbjct: 81  ITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138

Query: 176 LRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLV 235
           L    ++  +    +             +     N         +              +
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--------I 190

Query: 236 EYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESL 295
              + L  + S+  + N  S   P+ +     L  L+L+ N         + ++ ++  L
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDL 246

Query: 296 DFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIP 331
           D + N++    P  +S L+ L  L L  N +S   P
Sbjct: 247 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.9 bits (190), Expect = 2e-16
 Identities = 56/281 (19%), Positives = 114/281 (40%), Gaps = 9/281 (3%)

Query: 34  SNNALSGSIIHLICNGDNKSV-IISLKLSKNYFSGD--IPDCWMNWPHLQVLNLDDNY-F 89
           + +  + + + ++C+ D ++  + +L LS         IP    N P+L  L +      
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 90  TGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERF 149
            G +P +I  L+ L  L++ +  ++G  P  L    +L++LD   N   G++P  +    
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSL 148

Query: 150 PRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQK 209
           P L+ +    N+ +G++P      + L        N              +A ++ S   
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208

Query: 210 NAIYYFVTRGNIVF---EDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE 266
                 V  G+         +  +    +    +   +  +D+  N   G +P  LT L+
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 267 GLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIP 307
            L +LN+S N   G+IP+  GN++  +   ++ N+     P
Sbjct: 269 FLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.4 bits (181), Expect = 2e-15
 Identities = 65/338 (19%), Positives = 108/338 (31%), Gaps = 51/338 (15%)

Query: 46  ICNGDNKSVIISLK--------LSKNYFSGDIPDCWMNWP-----------HLQVLNLDD 86
           +CN  +K  ++ +K        LS    + D   C   W             +  L+L  
Sbjct: 2   LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDC--CNRTWLGVLCDTDTQTYRVNNLDLSG 59

Query: 87  NYFTGNLPI--SIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTW 144
                  PI  S+  L  L  L++                 + +      +         
Sbjct: 60  LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

Query: 145 VGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPR---CINNFTAMA 201
              +   L+ L+   N  +G+LP  +  L  L  +    N +SG IP      +      
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 202 TINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ 261
           TI+ +     I       N+ F D S              +          N       +
Sbjct: 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 262 LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL 321
           +   + L  L+L +N   G +P+ +  ++ + SL+ S N L                   
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC------------------ 281

Query: 322 SENDLSGQIPSSTQLQSFGASCFSGND-LCGAPLPDCT 358
                 G+IP    LQ F  S ++ N  LCG+PLP CT
Sbjct: 282 ------GEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 3e-14
 Identities = 45/280 (16%), Positives = 90/280 (32%), Gaps = 28/280 (10%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
           P   +L+L +N  T         L +L +L L NN+++ I P +      L  L + +N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINN 196
               +P  + +    L +      K   S+   L  +  +  L       SG        
Sbjct: 91  -LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQG 148

Query: 197 FTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSG 256
              ++ I  ++                         +      +   +  + +  N  + 
Sbjct: 149 MKKLSYIRIADTN-----------------------ITTIPQGLPPSLTELHLDGNKITK 185

Query: 257 EIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFL 316
                L  L  L  L LS N        ++ N   +  L  + N+L  ++P  ++   ++
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 244

Query: 317 NHLNLSENDLSGQIPSSTQLQSFGASCFS--GNDLCGAPL 354
             + L  N++S    +      +     S  G  L   P+
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 14/188 (7%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L LS NQ+  +                  L +  N ++  +   + NG N+ +++ L  
Sbjct: 83  RLYLSKNQLKELPEKMPKT--------LQELRVHENEIT-KVRKSVFNGLNQMIVVELGT 133

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           +    SG     +     L  + + D   T    I  G   SL  LHL  N++  +   S
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAAS 190

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
           LK  ++L  L +  N         +    P L  L+L +NK     P  L    +++++ 
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVY 248

Query: 181 VAHNNLSG 188
           + +NN+S 
Sbjct: 249 LHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 3e-08
 Identities = 48/276 (17%), Positives = 84/276 (30%), Gaps = 28/276 (10%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            L+L NN+I  +                  L L NN +S               +  L L
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLH-----TLILINNKISKISPGAFAPLVK---LERLYL 86

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           SKN               L+V   +      ++  +      +  L     + +GI   +
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILD 180
            +    L  + I +     +I T      P L  L+L  NK        L  L  L  L 
Sbjct: 146 FQGMKKLSYIRIADT----NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 181 VAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI 240
           ++ N++S      + N   +  ++ +N K          +   +        + +  N+I
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV-------VYLHNNNI 254

Query: 241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHN 276
                   I  N+F    P   T       ++L  N
Sbjct: 255 ------SAIGSNDFCP--PGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 17/92 (18%), Positives = 30/92 (32%)

Query: 239 SILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFS 298
            +      +D+  N  +        NL+ L TL L +N      P     +  +E L  S
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 299 TNRLFGRIPQSMSSLSFLNHLNLSENDLSGQI 330
            N+L     +   +L  L         +   +
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSV 119

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 49/256 (19%), Positives = 86/256 (33%), Gaps = 8/256 (3%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
              Q + L  N  +     S     +L  L L +N LA I   +    + L  LD+ +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 137 FFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINN 196
              S+         RL  L+L         P     L  L+ L +  N L         +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 197 FTAMATIN-SSNQKNAIYYFVTRGNIVFEDASV---VTKGLLVEYNSILNLVRSIDISKN 252
              +  +    N+ +++     RG    +   +       +       L  + ++ +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 253 NFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSS 312
           N S      L  L  LQ L L+ N +V            ++    S++ +   +PQ ++ 
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 313 LSFLNHLNLSENDLSG 328
                   L+ NDL G
Sbjct: 271 RDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 47/281 (16%), Positives = 83/281 (29%), Gaps = 34/281 (12%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKL 60
            + L  N+I  V                  L +     +             +++  L L
Sbjct: 36  RIFLHGNRISHVPAASFRA--------CRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 61  SKNYFSGDI-PDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPV 119
           S N     + P  +     L  L+LD        P     L++L+ L+L++N L  +   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 120 SLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179
           + ++  +L  L +  N     +P         L  L L  N+     P     L  L  L
Sbjct: 148 TFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 180 DVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNS 239
            +  NNLS      +    A+  +  ++            N    D              
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLND------------NPWVCDCRAR---------P 245

Query: 240 ILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVG 280
           +   ++    S +     +P     L G     L+ N   G
Sbjct: 246 LWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 34/260 (13%), Positives = 70/260 (26%), Gaps = 22/260 (8%)

Query: 93  LPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRL 152
           +P+ I    + + + L  NR++ +   S + C +L  L +  N                 
Sbjct: 26  VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 153 LILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI 212
            +    + +     P     L  L  L      L     + +                  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLH-----LDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 213 YYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLN 272
                  +  F D                  +  + +  N  S         L  L  L 
Sbjct: 139 NALQALPDDTFRDL---------------GNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 273 LSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS 332
           L  N      P    ++  + +L    N L     ++++ L  L +L L++N       +
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 333 STQLQSFGASCFSGNDLCGA 352
                       S +++  +
Sbjct: 244 RPLWAWLQKFRGSSSEVPCS 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 3e-09
 Identities = 33/284 (11%), Positives = 93/284 (32%), Gaps = 22/284 (7%)

Query: 31  LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90
           LDL+   L   +   + +      +I+ +  +++    + +   +   +Q ++L ++   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG----VIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIE 59

Query: 91  GN-LPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERF 149
            + L   +   S L++L L   RL+     +L   S+L+ L++     F           
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 150 PRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQK 209
              L     S  F+ +       +  +             +     N           + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVS-----ETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 210 NAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISK-NNFSGEIPMQLTNLEGL 268
             + +     +++ ++          +    LN ++ + +S+  +   E  ++L  +  L
Sbjct: 175 PNLVHLDLSDSVMLKNDCF-------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 269 QTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSS 312
           +TL +      G +      +     L  + +        ++ +
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALP---HLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRL 302
           L +++D++  N   ++  +L +  G+       +F    + E+    R ++ +D S + +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI 58

Query: 303 FGR-IPQSMSSLSFLNHLNLSENDLSGQIPSS 333
               +   +S  S L +L+L    LS  I ++
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 4e-07
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 80  QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFG 139
           +VL+L     T      +  L  +  L L +NRL  + P      ++L  L++ +     
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 140 SIPTWVGERFPRLLILNLRSNKFNG-SLPVQLCHLTFLRILDVAHNNLSG 188
                     PRL  L L +N+    +    L     L +L++  N+L  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 14/130 (10%)

Query: 2   LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
           L+L++  +  V+ + +   L         LDLS+N L      L      + +       
Sbjct: 3   LHLAHKDLT-VLCHLEQLLLVTH------LDLSHNRLRALPPALAALRCLEVLQA----- 50

Query: 62  KNYFSGDIPDCWMNWPHLQVLNLDDNYFTG-NLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
            +  + +  D   N P LQ L L +N          + +   L  L+L+ N L     + 
Sbjct: 51  -SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

Query: 121 LKNCSSLISL 130
            +    L S+
Sbjct: 110 ERLAEMLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 24/116 (20%)

Query: 245 RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIP--------------------- 283
           R + ++  + +  +   L  L  +  L+LSHN      P                     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 284 ENIGNMRSIESLDFSTNRLFG-RIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQS 338
           + + N+  ++ L    NRL      Q + S   L  LNL  N L  +     +L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 6e-07
 Identities = 35/234 (14%), Positives = 55/234 (23%), Gaps = 29/234 (12%)

Query: 70  PDCWMNW-PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLI 128
           P C ++       +N D    T  LP  +        LHL  N L      +L   + L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 129 SLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSG 188
            L++   +                                 L  L  L +      +L  
Sbjct: 59  QLNLDRAELTKLQVDG------------------------TLPVLGTLDLSHNQLQSLPL 94

Query: 189 TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSID 248
                        + N                          K L     +    +  + 
Sbjct: 95  LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154

Query: 249 ISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRL 302
           ++ NN +      L  LE L TL L  N     IP+       +       N  
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 37/204 (18%), Positives = 60/204 (29%), Gaps = 4/204 (1%)

Query: 147 ERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSS 206
            +    L +N        +LP  L       IL ++ N L       +  +T +  +N  
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 207 NQKNAIYYFVTRGNIVFEDASVVT-KGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL 265
             +           ++            L      L  +  +D+S N  +      L  L
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 266 EGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEND 325
             LQ L L  N      P  +     +E L  + N L       ++ L  L+ L L EN 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 326 LSGQIPSSTQLQSFGASCFSGNDL 349
           L               +   GN  
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 63  NYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLK 122
           N      P      P L+ L+L +N  T      +  L +L +L L+ N L  I P    
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFF 192

Query: 123 NCSSLISLDIGENDF 137
               L    +  N +
Sbjct: 193 GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 29/190 (15%), Positives = 52/190 (27%), Gaps = 20/190 (10%)

Query: 1   ELNLSNNQIYGVIP------------YFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICN 48
            L+LS N +Y                  D   L     +  L  L    LS + +  +  
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94

Query: 49  GDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHL 108
                  +++          +P   +                  LP  + T +       
Sbjct: 95  LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154

Query: 109 RN-NRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP 167
              N L  +    L    +L +L + EN  + +IP         L    L  N +  +  
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWLCN-- 210

Query: 168 VQLCHLTFLR 177
              C + + R
Sbjct: 211 ---CEILYFR 217

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 33/235 (14%), Positives = 66/235 (28%), Gaps = 28/235 (11%)

Query: 44  HLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL 103
           H IC     +  + +   K   +  +P          +L+L +N        ++   + L
Sbjct: 1   HPICEVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRL 57

Query: 104 RSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN 163
             L+L                  L +LD+  N                  +L++  N+  
Sbjct: 58  TQLNLDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALT--VLDVSFNRLT 113

Query: 164 GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVF 223
                 L  L  L+ L +  N L    P  +     +  ++ +N                
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL------------- 160

Query: 224 EDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFF 278
                    L     + L  + ++ + +N+    IP        L    L  N +
Sbjct: 161 -------TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 2e-06
 Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 6/94 (6%)

Query: 241 LNLVRSIDISKNNFSGEIPMQL-TNLEGLQTLNLSHNFF----VGKIPENIGNMRSIESL 295
           L++ +S+DI     S     +L   L+  Q + L            I   +    ++  L
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 296 DFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQ 329
           +  +N L       +          + +  L   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 79  LQVLNLDDNYFTGN-LPISIGTLSSLRSLHLRNNRL----AGIFPVSLKNCSSLISLDIG 133
           +Q L++     +       +  L   + + L +  L          +L+   +L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 134 ENDFFGSIPTWVGERF----PRLLILNLRSNKFN 163
            N+        V +       ++  L+L++    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 57  SLKLSKNYFS-GDIPDCWMNWPHLQVLNLDDNYFTG----NLPISIGTLSSLRSLHLRNN 111
           SL +     S     +        QV+ LDD   T     ++  ++    +L  L+LR+N
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 112 RLAGIFPVSL-----KNCSSLISLDIGENDFFGSIPTW 144
            L  +    +          +  L +      G+    
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 9/84 (10%)

Query: 259 PMQLTNLEGLQTLNLSHNFF----VGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSS-- 312
                    L+ L L+           +   +    S+  LD S N L       +    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 313 ---LSFLNHLNLSENDLSGQIPSS 333
                 L  L L +   S ++   
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR 445

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 3e-06
 Identities = 23/224 (10%), Positives = 65/224 (29%), Gaps = 15/224 (6%)

Query: 75  NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGE 134
              +   +    +  T    ++   L  + +L      +  I    ++  ++LI L++ +
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 135 NDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCI 194
           N               + L            L           I  +   +   T    +
Sbjct: 73  NQITD-------LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL 125

Query: 195 NNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNF 254
              + +  +     +      +     +   +    +   +   + L+ + ++    N  
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 255 SGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFS 298
           S   P  L +L  L  ++L +N      P  + N  ++  +  +
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 61  SKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS 120
           S             N   L  L  DDN  +      + +L +L  +HL+NN+++ + P  
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP-- 212

Query: 121 LKNCSSLISLDI 132
           L N S+L  + +
Sbjct: 213 LANTSNLFIVTL 224

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 77  PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND 136
              Q L+L       +L       +    L+ R++  A    +  +N   L+SL++  N 
Sbjct: 22  GSQQALDLKGLRSDPDL----VAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNR 76

Query: 137 FFG-SIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCIN 195
            +     + + ++ P L ILNL  N+      +       L  L +  N+LS T      
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 196 NFTAM 200
             +A+
Sbjct: 137 YISAI 141

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 12/75 (16%), Positives = 22/75 (29%)

Query: 58  LKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIF 117
           L L+KN         +      ++   D+N             S    L +   R+  + 
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 118 PVSLKNCSSLISLDI 132
              L+N   L +   
Sbjct: 218 SYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 26/231 (11%), Positives = 59/231 (25%), Gaps = 10/231 (4%)

Query: 78  HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDF 137
             +V    ++  T  +P  +    +   L     +L  I   +      L  ++I +ND 
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 138 FGSIPTWVGERF------PRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIP 191
              I   V                NL          +       +    + H      I 
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 192 RCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISK 251
                   +    + +      +       V    +      +         +  +++S 
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 252 NNFSGEIPMQ-LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNR 301
           NN   E+P        G   L++S           + N++ + +      +
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 10/107 (9%)

Query: 72  CWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131
            +     L       N  +  +        SL  L++ NN+L  +          L  L 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLI 310

Query: 132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRI 178
              N     +P    E    L  L++  N      P     +  LR+
Sbjct: 311 ASFNH-LAEVP----ELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 250 SKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQS 309
             N  S EI         L+ LN+S+N  + ++P     +   E L  S N L   +P+ 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVPEL 322

Query: 310 MSSLSFLNHLNLSENDLSG 328
             +L     L++  N L  
Sbjct: 323 PQNLK---QLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 44/327 (13%), Positives = 85/327 (25%), Gaps = 28/327 (8%)

Query: 1   ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSG--------SIIHLICNGDNK 52
           EL L+N  +           LP  P     L  S N+L+           + +  N    
Sbjct: 42  ELELNNLGL---------SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 92

Query: 53  SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNR 112
              +   L     S +  +      +   L + D        +     S        N  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 113 LAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCH 172
                  +L   +++ + +           +         ++  L   +    L      
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 173 LTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKG 232
              L+ L     +L     R            S    +      +  + +  +   +   
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 233 LLVEYNSILNL--VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMR 290
                +       +  +++S N    E+P     LE    L  S N    ++PE   N  
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHL-AEVPELPQN-- 325

Query: 291 SIESLDFSTNRLFGRIPQSMSSLSFLN 317
            ++ L    N L    P    S+  L 
Sbjct: 326 -LKQLHVEYNPL-REFPDIPESVEDLR 350

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	433
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.71
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.31
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.02

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.7e-33  Score=258.40  Aligned_cols=260  Identities=29%  Similarity=0.569  Sum_probs=229.9

Q ss_pred             CCCccEEEcCCCcCcC--cCCcccCCCCCCCEEEccC-CcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCc
Q 042476           52 KSVIISLKLSKNYFSG--DIPDCWMNWPHLQVLNLDD-NYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLI  128 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  128 (433)
                      -.+++.|+|+++.+.+  .+|..+.++++|++|+|++ |.+.+.+|..|+++++|++|++++|.+.+..+..+..+..|+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            3478999999998886  4788999999999999986 788888999999999999999999999988888899999999


Q ss_pred             EEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCc-CEEEccCCcCcccCCCCcccccccccccccc
Q 042476          129 SLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL-RILDVAHNNLSGTIPRCINNFTAMATINSSN  207 (433)
Q Consensus       129 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  207 (433)
                      +++++.|.+.+.+|..+. .+++++++++++|.+.+.+|..+..+.++ +.+++++|++++..|..+..+.         
T Consensus       129 ~l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~---------  198 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---------  198 (313)
T ss_dssp             EEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC---------
T ss_pred             ccccccccccccCchhhc-cCcccceeeccccccccccccccccccccccccccccccccccccccccccc---------
Confidence            999999998888888877 79999999999999998899888888776 7899999998877765543322         


Q ss_pred             ccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccC
Q 042476          208 QKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIG  287 (433)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~  287 (433)
                                                          ...+++.++...+..|..+..+++++.+++++|.+.+.++ .++
T Consensus       199 ------------------------------------~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~  241 (313)
T d1ogqa_         199 ------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG  241 (313)
T ss_dssp             ------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCC
T ss_pred             ------------------------------------cccccccccccccccccccccccccccccccccccccccc-ccc
Confidence                                                3467888888888899999999999999999999987655 578


Q ss_pred             CCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC-cCCCCCCCCCC
Q 042476          288 NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN-DLCGAPLPDCT  358 (433)
Q Consensus       288 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~~~c~  358 (433)
                      .+++|+.|++++|++++.+|..+.++++|++|+|++|+++|.+|....++.++.+++++| .+||.|++.|+
T Consensus       242 ~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCCCCC
Confidence            899999999999999999999999999999999999999999999888999999999999 69999998885

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.1e-30  Score=240.87  Aligned_cols=252  Identities=23%  Similarity=0.399  Sum_probs=221.9

Q ss_pred             CCccEEEccCCccccc--CCccccCCCCCCCccEEEcCC-CcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCC
Q 042476           26 FEFGLLDLSNNALSGS--IIHLICNGDNKSVIISLKLSK-NYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSS  102 (433)
Q Consensus        26 ~~L~~L~l~~n~l~~~--~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~  102 (433)
                      .+++.|++++++++|.  +|..+   .++++|++|+|++ |++.+.+|..|.++++|++|+|++|++.+..+..+..+.+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l---~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSL---ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG---GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEEECCCCCCCCCCCCChHH---hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence            3699999999999984  67777   5699999999987 7899999999999999999999999999988999999999


Q ss_pred             cCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCC-ccEEEeeCccccccCCccccCCCCcCEEEc
Q 042476          103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPR-LLILNLRSNKFNGSLPVQLCHLTFLRILDV  181 (433)
Q Consensus       103 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  181 (433)
                      |+.+++++|.+.+.+|..+..++.++++++++|.+.+.+|..+. .+.+ ++.+++++|++++..+..+..+..+ .+++
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l  204 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDL  204 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEEC
T ss_pred             hcccccccccccccCchhhccCcccceeeccccccccccccccc-cccccccccccccccccccccccccccccc-cccc
Confidence            99999999999999999999999999999999999889999888 5555 5999999999999888888887654 7999


Q ss_pred             cCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcc
Q 042476          182 AHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ  261 (433)
Q Consensus       182 ~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~  261 (433)
                      +.+...+..|..+..+                                            +.++.+++++|.+.+.++ .
T Consensus       205 ~~~~~~~~~~~~~~~~--------------------------------------------~~l~~l~~~~~~l~~~~~-~  239 (313)
T d1ogqa_         205 SRNMLEGDASVLFGSD--------------------------------------------KNTQKIHLAKNSLAFDLG-K  239 (313)
T ss_dssp             CSSEEEECCGGGCCTT--------------------------------------------SCCSEEECCSSEECCBGG-G
T ss_pred             cccccccccccccccc--------------------------------------------cccccccccccccccccc-c
Confidence            9888887776655443                                            347788888888886654 5


Q ss_pred             ccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcc
Q 042476          262 LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG  328 (433)
Q Consensus       262 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  328 (433)
                      +..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|. +.++++|+.+++++|+..+
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred             cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcccc
Confidence            78889999999999999999999999999999999999999998885 5788999999999998443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.3e-24  Score=199.02  Aligned_cols=242  Identities=20%  Similarity=0.294  Sum_probs=142.5

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476           28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH  107 (433)
Q Consensus        28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~  107 (433)
                      .+.+|=++++++ .+|..+     .+.+++|+|++|+++...+..|.++++|++|++++|.+....|.+|.++++|++|+
T Consensus        12 ~~~~~C~~~~L~-~lP~~l-----~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL-----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC-----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEecCCCCC-ccCCCC-----CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            456666666666 345444     35677788888877765556777777888888888777766677777778888888


Q ss_pred             ccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcccc--ccCCccccCCCCcCEEEccCCc
Q 042476          108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN--GSLPVQLCHLTFLRILDVAHNN  185 (433)
Q Consensus       108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~  185 (433)
                      +++|.++. +|..  ....+..|++.+|.+ ..++...+.....++.++...+...  ...+..+..+++|+.+++++|.
T Consensus        86 l~~n~l~~-l~~~--~~~~l~~L~~~~n~l-~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          86 LSKNQLKE-LPEK--MPKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             CCSSCCSB-CCSS--CCTTCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ccCCccCc-Cccc--hhhhhhhhhccccch-hhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            88877774 3332  235677777777777 3555555556667777777666433  2334566777778888887777


Q ss_pred             CcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCC
Q 042476          186 LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL  265 (433)
Q Consensus       186 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l  265 (433)
                      +. .+|..+  +++                                            |+.|++++|..++..+..+.++
T Consensus       162 l~-~l~~~~--~~~--------------------------------------------L~~L~l~~n~~~~~~~~~~~~~  194 (305)
T d1xkua_         162 IT-TIPQGL--PPS--------------------------------------------LTELHLDGNKITKVDAASLKGL  194 (305)
T ss_dssp             CC-SCCSSC--CTT--------------------------------------------CSEEECTTSCCCEECTGGGTTC
T ss_pred             cc-ccCccc--CCc--------------------------------------------cCEEECCCCcCCCCChhHhhcc
Confidence            65 333321  222                                            4444444444444444444444


Q ss_pred             ccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCc
Q 042476          266 EGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS  327 (433)
Q Consensus       266 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  327 (433)
                      +.++.|++++|++++..+..+.++++|++|+|++|.++ .+|..+..+++|++|++++|+++
T Consensus       195 ~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            44444444444444444444444444444444444443 23344444444444444444444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-25  Score=201.28  Aligned_cols=209  Identities=21%  Similarity=0.184  Sum_probs=104.7

Q ss_pred             CCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEee
Q 042476           79 LQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLR  158 (433)
Q Consensus        79 L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  158 (433)
                      +++|+|++|+++...+.+|.++++|++|++++|.+..+.+..+..+..+..++...+.....++...+.++++|++|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            44444444444433333444444444444444444444444444444444444332222233333333344455555555


Q ss_pred             CccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehh
Q 042476          159 SNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYN  238 (433)
Q Consensus       159 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (433)
                      +|.+....+..+...++|+.+++++|.+++..+..+..                                          
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~------------------------------------------  151 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------------------------------  151 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------------------------------
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhcc------------------------------------------
Confidence            54444333344444455555555555554222222222                                          


Q ss_pred             hhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCe
Q 042476          239 SILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNH  318 (433)
Q Consensus       239 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  318 (433)
                        ++.|+.|++++|.+++..+..|.++++|+.+++++|++++..|..|..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus       152 --~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         152 --LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             --CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             --ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCE
Confidence              222445555555555445555556666666666666666555666666666666666666666555556666666666


Q ss_pred             eeCcCCcCcccCC
Q 042476          319 LNLSENDLSGQIP  331 (433)
Q Consensus       319 L~L~~n~l~~~~p  331 (433)
                      |++++|++.|.++
T Consensus       230 L~l~~N~l~C~C~  242 (284)
T d1ozna_         230 LRLNDNPWVCDCR  242 (284)
T ss_dssp             EECCSSCEECSGG
T ss_pred             EEecCCCCCCCcc
Confidence            6666666665444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2e-24  Score=197.80  Aligned_cols=250  Identities=20%  Similarity=0.262  Sum_probs=205.2

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      ++++++|++++|+++...+..|   .++++|++|++++|.+....|..|.+++.|++|++++|+++ .+|..+  .+.++
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f---~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~  103 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDF---KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQ  103 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTT---TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCC
T ss_pred             CCCCCEEECcCCcCCCcChhHh---hccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch--hhhhh
Confidence            4689999999999987766666   55899999999999999888999999999999999999998 456543  46899


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCcccc-ccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFF-GSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAH  183 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  183 (433)
                      .|.+.+|.+....+..+.....+..++...+... .......+..+++|+.+++++|.+. .++..+  +++|++|++++
T Consensus       104 ~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~  180 (305)
T d1xkua_         104 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDG  180 (305)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTT
T ss_pred             hhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCC
Confidence            9999999999877777888889999999887642 1222334457899999999999987 445443  57899999999


Q ss_pred             CcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcccc
Q 042476          184 NNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLT  263 (433)
Q Consensus       184 n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~  263 (433)
                      |......+..+..                                            ++.++.|++++|.+++..+..+.
T Consensus       181 n~~~~~~~~~~~~--------------------------------------------~~~l~~L~~s~n~l~~~~~~~~~  216 (305)
T d1xkua_         181 NKITKVDAASLKG--------------------------------------------LNNLAKLGLSFNSISAVDNGSLA  216 (305)
T ss_dssp             SCCCEECTGGGTT--------------------------------------------CTTCCEEECCSSCCCEECTTTGG
T ss_pred             CcCCCCChhHhhc--------------------------------------------ccccccccccccccccccccccc
Confidence            9988666555444                                            34477888999999988888999


Q ss_pred             CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCcc------ccCCCCCCeeeCcCCcCcc
Q 042476          264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQS------MSSLSFLNHLNLSENDLSG  328 (433)
Q Consensus       264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~------l~~l~~L~~L~L~~n~l~~  328 (433)
                      ++++|++|+|++|+++ .+|..+..+++|+.|++++|+++......      .....+|+.|++++|++..
T Consensus       217 ~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         217 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            9999999999999998 67889999999999999999998653333      3456789999999999863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2e-24  Score=204.20  Aligned_cols=192  Identities=20%  Similarity=0.270  Sum_probs=142.5

Q ss_pred             cccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccc
Q 042476          120 SLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTA  199 (433)
Q Consensus       120 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~  199 (433)
                      .+..+++++.+++++|.+.+.. ..  ...++|++|++++|.++. + ..+..+++|+.|++++|.+++..  .+..+++
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~-~~--~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~  264 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDIT-PL--GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTK  264 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCG-GG--GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTT
T ss_pred             ccccccccceeeccCCccCCCC-cc--cccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--ccccccc
Confidence            4566788999999999885433 32  257899999999999874 2 46788999999999999987433  3778889


Q ss_pred             ccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccc
Q 042476          200 MATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFV  279 (433)
Q Consensus       200 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~  279 (433)
                      |+.++++.+....                      ......+..++.+++..|.+++.  ..+..+++++.|++++|+++
T Consensus       265 L~~L~l~~~~l~~----------------------~~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~  320 (384)
T d2omza2         265 LTELKLGANQISN----------------------ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNIS  320 (384)
T ss_dssp             CSEEECCSSCCCC----------------------CGGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCS
T ss_pred             CCEeeccCcccCC----------------------CCccccccccccccccccccccc--cccchhcccCeEECCCCCCC
Confidence            9999887664110                      11233456678888888887642  34677788888888888887


Q ss_pred             cCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC
Q 042476          280 GKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN  347 (433)
Q Consensus       280 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n  347 (433)
                      +..  .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++.+| ...++.++.+++++|
T Consensus       321 ~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         321 DIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            543  26778888888888888864 33 57788888888888888886544 556777888887765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=1e-23  Score=199.16  Aligned_cols=284  Identities=20%  Similarity=0.239  Sum_probs=197.1

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +.+|++|+++++.++.. . .+   ..+++|++|++++|++++..  .++++++|++|++++|.+.+. + .++++++|+
T Consensus        43 l~~l~~L~l~~~~I~~l-~-gl---~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~  113 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI-D-GV---EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLT  113 (384)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TG---GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCC
T ss_pred             hCCCCEEECCCCCCCCc-c-cc---ccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccc-c-ccccccccc
Confidence            45788888888877642 1 12   34788888888888887543  377888888888888888743 2 377788888


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCcccc-----------------------------------------ccCCh
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFF-----------------------------------------GSIPT  143 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-----------------------------------------~~~~~  143 (433)
                      .|+++++.+++..+.  .....+.......+.+.                                         .....
T Consensus       114 ~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (384)
T d2omza2         114 GLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS  191 (384)
T ss_dssp             EEECCSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccccccccc--cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            888888776643221  12222222222211110                                         01112


Q ss_pred             hhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceee
Q 042476          144 WVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVF  223 (433)
Q Consensus       144 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  223 (433)
                      .. ..+++++.+++++|.+.+..+  +..+++|++|++++|.++. + ..+..+++|+.+++..+...            
T Consensus       192 ~~-~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~------------  254 (384)
T d2omza2         192 VL-AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQIS------------  254 (384)
T ss_dssp             GG-GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC------------
T ss_pred             cc-ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccC------------
Confidence            22 367889999999998875433  4567789999999998873 3 35777888888877765411            


Q ss_pred             ecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC
Q 042476          224 EDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF  303 (433)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  303 (433)
                              .  ...+..+++|+.|+++++.+++..  .+..+..++.+.++.|.+++  ...+..+++++.|++++|+++
T Consensus       255 --------~--~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~  320 (384)
T d2omza2         255 --------N--LAPLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS  320 (384)
T ss_dssp             --------C--CGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCS
T ss_pred             --------C--CCcccccccCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCC
Confidence                    0  112445778999999999887543  36678889999999998874  234677889999999999997


Q ss_pred             CCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCC
Q 042476          304 GRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAP  353 (433)
Q Consensus       304 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~  353 (433)
                      +..  .+..+++|++|++++|++++ ++....++.++.+++++|.+.+.+
T Consensus       321 ~l~--~l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         321 DIS--PVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CCG--GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCBCG
T ss_pred             CCc--ccccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCcCCCCh
Confidence            653  37788999999999999885 555677888999999999887653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-23  Score=188.93  Aligned_cols=268  Identities=18%  Similarity=0.195  Sum_probs=205.8

Q ss_pred             EEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEcc
Q 042476           30 LLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLR  109 (433)
Q Consensus        30 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~  109 (433)
                      .++.++++++ .+|..+     .+.+++|+|++|+|+...+.+|.++++|++|++++|.+....+..+.++..++.+...
T Consensus        15 ~v~c~~~~L~-~iP~~i-----p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI-----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             EEECCSSCCS-SCCTTC-----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEEcCCCCCC-ccCCCC-----CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccc
Confidence            4566666666 456555     4568899999999987777788899999999999999988778888888888888764


Q ss_pred             -CCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcc
Q 042476          110 -NNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSG  188 (433)
Q Consensus       110 -~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  188 (433)
                       .+.+....+..|+++++|++|+++.|.+ ..++...+....+|+.+++++|.+++..+.++..+++|++|++++|++..
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cccccccccchhhcccccCCEEecCCccc-ccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc
Confidence             5667767778888999999999999887 45555555578899999999999987667788889999999999999875


Q ss_pred             cCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccC
Q 042476          189 TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGL  268 (433)
Q Consensus       189 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L  268 (433)
                      ..+..+.++                                            ++|+.+++++|.+++..|..|.++++|
T Consensus       168 l~~~~f~~l--------------------------------------------~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         168 VPERAFRGL--------------------------------------------HSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             ECTTTTTTC--------------------------------------------TTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cchhhhccc--------------------------------------------cccchhhhhhccccccChhHhhhhhhc
Confidence            555555443                                            447788899999988889999999999


Q ss_pred             ceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCc
Q 042476          269 QTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGND  348 (433)
Q Consensus       269 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~  348 (433)
                      +.|++++|++.+..+..|+.+++|+.|++++|.+...-+. ..-...++.+....+++.+..|..  +......+++.++
T Consensus       204 ~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~~--l~g~~l~~l~~~~  280 (284)
T d1ozna_         204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR--LAGRDLKRLAAND  280 (284)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGG--GTTCBGGGSCGGG
T ss_pred             ccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCchH--HcCCccccCCHHH
Confidence            9999999999988888899999999999999988643221 111123556666777888766643  3334445566666


Q ss_pred             CCC
Q 042476          349 LCG  351 (433)
Q Consensus       349 l~~  351 (433)
                      ++|
T Consensus       281 l~g  283 (284)
T d1ozna_         281 LQG  283 (284)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.7e-23  Score=185.16  Aligned_cols=180  Identities=22%  Similarity=0.280  Sum_probs=113.4

Q ss_pred             CcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEc
Q 042476          102 SLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDV  181 (433)
Q Consensus       102 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  181 (433)
                      ++++|+|++|.+++..+.+|.++++|++|++++|.+. .++..  ..+++|++|++++|++. ..+..+.++++|+.|++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--ccccccccccccccccc-ccccccccccccccccc
Confidence            3444444444444333333444444444444444441 22221  13455555555555554 23445556666666666


Q ss_pred             cCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcc
Q 042476          182 AHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ  261 (433)
Q Consensus       182 ~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~  261 (433)
                      ++|.+....+..+..                                            +.+++.|++++|.++...+..
T Consensus       108 ~~~~~~~~~~~~~~~--------------------------------------------l~~l~~L~l~~n~l~~l~~~~  143 (266)
T d1p9ag_         108 SFNRLTSLPLGALRG--------------------------------------------LGELQELYLKGNELKTLPPGL  143 (266)
T ss_dssp             CSSCCCCCCSSTTTT--------------------------------------------CTTCCEEECTTSCCCCCCTTT
T ss_pred             cccccceeecccccc--------------------------------------------ccccccccccccccceecccc
Confidence            666655322222222                                            334666777777777666667


Q ss_pred             ccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccC
Q 042476          262 LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQI  330 (433)
Q Consensus       262 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  330 (433)
                      +..+++|+.|++++|++++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++.|..
T Consensus       144 ~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            777888999999999998777788888999999999999987 67777778889999999999988754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.4e-22  Score=177.01  Aligned_cols=199  Identities=20%  Similarity=0.220  Sum_probs=128.5

Q ss_pred             CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476           53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI  132 (433)
Q Consensus        53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  132 (433)
                      ..+.+++-+++.++ .+|..+.  +++++|+|++|++++..+.+|.++++|++|++++|.++.. + .++.+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccc
Confidence            34444555555555 2444332  3566666666666644445566666666666666666532 2 2345666666666


Q ss_pred             cCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccc
Q 042476          133 GENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI  212 (433)
Q Consensus       133 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~  212 (433)
                      ++|++. ..+..+. .+++|+.|++++|.+....+..+..+.++++|++++|.+....+..+..                
T Consensus        85 s~N~l~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~----------------  146 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP----------------  146 (266)
T ss_dssp             CSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT----------------
T ss_pred             cccccc-ccccccc-cccccccccccccccceeeccccccccccccccccccccceeccccccc----------------
Confidence            666663 3333333 5667777777777666555566667777777777777776333332222                


Q ss_pred             cccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCC
Q 042476          213 YYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI  292 (433)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  292 (433)
                                                  ++.++.+++++|++++..+..|..+++|++|+|++|+++ .+|+.+..+++|
T Consensus       147 ----------------------------l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L  197 (266)
T d1p9ag_         147 ----------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL  197 (266)
T ss_dssp             ----------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             ----------------------------cccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCC
Confidence                                        334677777788887777777888899999999999988 788878888999


Q ss_pred             CEEeCcCCcCC
Q 042476          293 ESLDFSTNRLF  303 (433)
Q Consensus       293 ~~L~Ls~n~l~  303 (433)
                      +.|+|++|.+.
T Consensus       198 ~~L~L~~Np~~  208 (266)
T d1p9ag_         198 PFAFLHGNPWL  208 (266)
T ss_dssp             SEEECCSCCBC
T ss_pred             CEEEecCCCCC
Confidence            99999998764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=1.9e-17  Score=153.53  Aligned_cols=281  Identities=22%  Similarity=0.274  Sum_probs=147.8

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +||||+|.++ .+|++        +++|++|++++|+++ .+|..      ..+|+.|++++|+++. +++.   .+.|+
T Consensus        42 ~LdLs~~~L~-~lp~~--------~~~L~~L~Ls~N~l~-~lp~~------~~~L~~L~l~~n~l~~-l~~l---p~~L~  101 (353)
T d1jl5a_          42 ELELNNLGLS-SLPEL--------PPHLESLVASCNSLT-ELPEL------PQSLKSLLVDNNNLKA-LSDL---PPLLE  101 (353)
T ss_dssp             EEECTTSCCS-CCCSC--------CTTCSEEECCSSCCS-SCCCC------CTTCCEEECCSSCCSC-CCSC---CTTCC
T ss_pred             EEEeCCCCCC-CCCCC--------CCCCCEEECCCCCCc-ccccc------hhhhhhhhhhhcccch-hhhh---ccccc
Confidence            4788888887 45653        457888999888887 34532      4678888888888763 3321   13588


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN  160 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  160 (433)
                      +|++++|.+. .+|. ++.+++|++|+++++.+.... .   ....+..+.+..+....  ...+. .++.++.+++.+|
T Consensus       102 ~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~~--~~~l~-~l~~l~~L~l~~n  172 (353)
T d1jl5a_         102 YLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLEE--LPELQ-NLPFLTAIYADNN  172 (353)
T ss_dssp             EEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSS--CCCCT-TCTTCCEEECCSS
T ss_pred             cccccccccc-cccc-hhhhccceeeccccccccccc-c---ccccccchhhccccccc--ccccc-ccccceecccccc
Confidence            8888888887 4553 567888888888888776332 2   23445555555443311  11111 4556666666655


Q ss_pred             ccccc------------------CCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCcee
Q 042476          161 KFNGS------------------LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIV  222 (433)
Q Consensus       161 ~l~~~------------------~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  222 (433)
                      .....                  ....+..++.|+.+++++|... ..+.....+..+...+.....   ..... ....
T Consensus       173 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~~~~~~~~~~~---~~~~~-~~l~  247 (353)
T d1jl5a_         173 SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD---LPELP-QSLT  247 (353)
T ss_dssp             CCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSC---CCCCC-TTCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc---ccccc-cccc
Confidence            54321                  1112345566677777666554 333333222222111111100   00000 0000


Q ss_pred             eecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcC
Q 042476          223 FEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRL  302 (433)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  302 (433)
                      ....   ..................++..+.+.+.    ...+++|++|+|++|+++ .+|..   +++|+.|++++|++
T Consensus       248 ~~~~---~~~~~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L  316 (353)
T d1jl5a_         248 FLDV---SENIFSGLSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHL  316 (353)
T ss_dssp             EEEC---CSSCCSEESCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC
T ss_pred             cccc---ccccccccccccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcC
Confidence            0000   0000000000112233444444444321    223567777777777776 45532   46777777777777


Q ss_pred             CCCCCccccCCCCCCeeeCcCCcCcccCC
Q 042476          303 FGRIPQSMSSLSFLNHLNLSENDLSGQIP  331 (433)
Q Consensus       303 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p  331 (433)
                      + .+|..   +++|+.|++++|+++ .+|
T Consensus       317 ~-~l~~~---~~~L~~L~L~~N~L~-~lp  340 (353)
T d1jl5a_         317 A-EVPEL---PQNLKQLHVEYNPLR-EFP  340 (353)
T ss_dssp             S-CCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred             C-ccccc---cCCCCEEECcCCcCC-CCC
Confidence            5 44442   356777777777776 344

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-18  Score=153.43  Aligned_cols=79  Identities=13%  Similarity=0.022  Sum_probs=48.6

Q ss_pred             eeEEEcccCcccccCCccccCCccCce-EeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476          244 VRSIDISKNNFSGEIPMQLTNLEGLQT-LNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS  322 (433)
Q Consensus       244 L~~L~L~~n~~~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  322 (433)
                      ++.+++++|.++...+..+.. .++++ +++++|+++...+..|.++++|+.|++++|+++...+..|.++++|+.+++.
T Consensus       155 l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         155 SVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ceeeecccccccccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            556666666666444433333 34333 3566677764444557777888888888888775555566666666666654


Q ss_pred             C
Q 042476          323 E  323 (433)
Q Consensus       323 ~  323 (433)
                      +
T Consensus       234 ~  234 (242)
T d1xwdc1         234 N  234 (242)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.3e-18  Score=149.04  Aligned_cols=219  Identities=13%  Similarity=0.069  Sum_probs=115.8

Q ss_pred             cEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCccc-CCcccCCCCCcCEEE
Q 042476           29 GLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGN-LPISIGTLSSLRSLH  107 (433)
Q Consensus        29 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~  107 (433)
                      ++++.++++++ .+|..+     .+++++|++++|+++...+.+|.++++|++|++++|.+... .+.+|.++++++++.
T Consensus        11 ~~i~c~~~~l~-~iP~~l-----~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL-----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS-----CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CEEEEeCCCCC-CcCCCC-----CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            45566666555 344443     34566666666666655555666666666666666665533 234566666666666


Q ss_pred             ccC-CcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCC-CcCEEEccCCc
Q 042476          108 LRN-NRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLT-FLRILDVAHNN  185 (433)
Q Consensus       108 L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~  185 (433)
                      +.. +.+....+..|..+++|+++++++|.+...-+......+..+..+...++.+....+..+..++ .++.|++++|+
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc
Confidence            543 4555555556666666666666666653222222222344555555555555543344444443 55566666666


Q ss_pred             CcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCC
Q 042476          186 LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL  265 (433)
Q Consensus       186 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l  265 (433)
                      ++...+..+ ...                                           ...+.+++++|.++...+..|.++
T Consensus       165 l~~i~~~~~-~~~-------------------------------------------~l~~~~~l~~n~l~~l~~~~f~~l  200 (242)
T d1xwdc1         165 IQEIHNCAF-NGT-------------------------------------------QLDELNLSDNNNLEELPNDVFHGA  200 (242)
T ss_dssp             CCEECTTTT-TTC-------------------------------------------CEEEEECTTCTTCCCCCTTTTTTS
T ss_pred             ccccccccc-cch-------------------------------------------hhhccccccccccccccHHHhcCC
Confidence            552222111 111                                           112223345556654444456666


Q ss_pred             ccCceEeCcCcccccCCCcccCCCCCCCEEeC
Q 042476          266 EGLQTLNLSHNFFVGKIPENIGNMRSIESLDF  297 (433)
Q Consensus       266 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  297 (433)
                      ++|+.|+|++|+++...+..|.++++|+.+++
T Consensus       201 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         201 SGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             CCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            77777777777766433444555555555444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=6.2e-18  Score=147.04  Aligned_cols=76  Identities=18%  Similarity=0.263  Sum_probs=49.3

Q ss_pred             cceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC
Q 042476          242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL  321 (433)
Q Consensus       242 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  321 (433)
                      ++|+.|++++|.++..  ..+.++++|++|+|++|++++ ++ .++.+++|+.|++++|++++. + .+.++++|+.|++
T Consensus       151 ~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~l  224 (227)
T d1h6ua2         151 TNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTL  224 (227)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEE
T ss_pred             cccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEe
Confidence            3455666666655432  225667777777877777764 33 266777888888888877643 3 2667777888777


Q ss_pred             cC
Q 042476          322 SE  323 (433)
Q Consensus       322 ~~  323 (433)
                      ++
T Consensus       225 sn  226 (227)
T d1h6ua2         225 TN  226 (227)
T ss_dssp             EE
T ss_pred             eC
Confidence            63

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.1e-17  Score=145.55  Aligned_cols=206  Identities=17%  Similarity=0.229  Sum_probs=150.0

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476           28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH  107 (433)
Q Consensus        28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~  107 (433)
                      +..++++.+++++.+..     ..+.+|+.|++.+|.++. + +.+.++++|++|++++|.+.+..  .+.++++|++++
T Consensus        21 ~~~~~l~~~~~~d~~~~-----~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~   91 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTVTQ-----ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELE   91 (227)
T ss_dssp             HHHHHTTCSSTTSEECH-----HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEE
T ss_pred             HHHHHhCCCCcCCcCCH-----HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccc
Confidence            34456677777665432     226788999999998874 3 35788899999999999888543  378888999999


Q ss_pred             ccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476          108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                      +++|.++..  ..+..+++|+.++++++...+ ++ .+. ..+.++.+.++++.+...  ..+..+++|++|++++|.+.
T Consensus        92 ~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~-~~-~~~-~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~  164 (227)
T d1h6ua2          92 LSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLA-GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS  164 (227)
T ss_dssp             CCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGT-TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred             ccccccccc--ccccccccccccccccccccc-cc-hhc-cccchhhhhchhhhhchh--hhhccccccccccccccccc
Confidence            998887743  357788899999998887632 22 222 578888888888877632  34667788888988888775


Q ss_pred             ccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCcc
Q 042476          188 GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEG  267 (433)
Q Consensus       188 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~  267 (433)
                      +..  .+.                                            .+++|+.|++++|.+++. + .+.++++
T Consensus       165 ~~~--~l~--------------------------------------------~l~~L~~L~Ls~n~l~~l-~-~l~~l~~  196 (227)
T d1h6ua2         165 DLT--PLA--------------------------------------------NLSKLTTLKADDNKISDI-S-PLASLPN  196 (227)
T ss_dssp             CCG--GGT--------------------------------------------TCTTCCEEECCSSCCCCC-G-GGGGCTT
T ss_pred             cch--hhc--------------------------------------------ccccceecccCCCccCCC-h-hhcCCCC
Confidence            211  122                                            245688889999888743 3 3788899


Q ss_pred             CceEeCcCcccccCCCcccCCCCCCCEEeCcC
Q 042476          268 LQTLNLSHNFFVGKIPENIGNMRSIESLDFST  299 (433)
Q Consensus       268 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  299 (433)
                      |++|+|++|++++. + .++++++|+.|++++
T Consensus       197 L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         197 LIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             CCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            99999999999854 3 378899999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=2.1e-18  Score=145.80  Aligned_cols=170  Identities=22%  Similarity=0.278  Sum_probs=105.3

Q ss_pred             EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccC-CccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476            2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSI-IHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ   80 (433)
Q Consensus         2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (433)
                      +|.++++++ .+|.    .+   ++++++|+|++|++++.+ +..|   .++++|++|++++|.+....+..|..+++|+
T Consensus        13 v~Cs~~~L~-~iP~----~l---p~~l~~L~Ls~N~i~~~~~~~~f---~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_          13 VDCTGRGLK-EIPR----DI---PLHTTELLLNDNELGRISSDGLF---GRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             EECTTSCCS-SCCS----CC---CTTCSEEECCSCCCCSBCCSCSG---GGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             EEEeCCCcC-ccCC----CC---CCCCCEEEeCCCCCccccccccc---CCCceEeeeeccccccccccccccccccccc
Confidence            456666666 4442    12   246777777777776544 3333   3477777777777777777777777777777


Q ss_pred             EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476           81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN  160 (433)
Q Consensus        81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  160 (433)
                      +|+|++|++....+.+|.++++|++|+|++|.|+++.+.+|..+++|++|++++|.+........+  ...++.+.+..+
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~  159 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGG  159 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGG
T ss_pred             eeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCC
Confidence            777777777766666777777777777777777777777777777777777777776432222211  122444445555


Q ss_pred             cccccCCccccCCCCcCEEEccCCcCc
Q 042476          161 KFNGSLPVQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (433)
                      .+....|..   +..++.++++.+.+.
T Consensus       160 ~~~c~~p~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         160 AARCGAPSK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             GCBBCSSTT---TTTSBGGGSCTTTCC
T ss_pred             CeEeCCChh---hcCCEeeecCHhhCc
Confidence            554433433   233444455555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=1.4e-15  Score=140.69  Aligned_cols=268  Identities=26%  Similarity=0.329  Sum_probs=170.5

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476           26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS  105 (433)
Q Consensus        26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~  105 (433)
                      .++++||+++++++. +|..      .++|++|++++|+++ .+|+.   ..+|+.|++++|.++ .++..   .+.|++
T Consensus        38 ~~l~~LdLs~~~L~~-lp~~------~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPEL------PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCSC------CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCE
T ss_pred             cCCCEEEeCCCCCCC-CCCC------CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccc
Confidence            468999999999974 5532      578999999999998 56765   457999999999988 34421   246999


Q ss_pred             EEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCc
Q 042476          106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNN  185 (433)
Q Consensus       106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  185 (433)
                      |++++|.+.. +|. ++.+++|++|+++++.+. ..+.    ....+..+.+..+...  ....+..++.++.+++++|.
T Consensus       103 L~L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         103 LGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EECCSSCCSS-CCC-CTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSC
T ss_pred             cccccccccc-ccc-hhhhccceeecccccccc-cccc----ccccccchhhcccccc--ccccccccccceeccccccc
Confidence            9999999984 454 678999999999998873 3332    3467778887766654  23567788889999998887


Q ss_pred             CcccCCCCc-------------------cccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeE
Q 042476          186 LSGTIPRCI-------------------NNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRS  246 (433)
Q Consensus       186 ~~~~~p~~~-------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  246 (433)
                      ... .+...                   ..++.++.+.+..+.                        ..........+..
T Consensus       174 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~------------------------~~~~~~~~~~l~~  228 (353)
T d1jl5a_         174 LKK-LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL------------------------LKTLPDLPPSLEA  228 (353)
T ss_dssp             CSS-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC------------------------CSSCCSCCTTCCE
T ss_pred             ccc-ccccccccccccccccccccccccccccccccccccccc------------------------ccccccccccccc
Confidence            652 22211                   111222222222111                        0001111233444


Q ss_pred             EEcccCcccccCCccccCCccCceEeCcCccccc----------------CCCcccCCCCCCCEEeCcCCcCCCCCCccc
Q 042476          247 IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVG----------------KIPENIGNMRSIESLDFSTNRLFGRIPQSM  310 (433)
Q Consensus       247 L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----------------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  310 (433)
                      +.+.++.+... +..   .+.+...++..+.+.+                .++.....+++|++|++++|+++ .+|.. 
T Consensus       229 ~~~~~~~~~~~-~~~---~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~-  302 (353)
T d1jl5a_         229 LNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL-  302 (353)
T ss_dssp             EECCSSCCSCC-CCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC-
T ss_pred             ccccccccccc-ccc---cccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccC-ccccc-
Confidence            55555444321 111   1222233332222110                11222334689999999999997 56653 


Q ss_pred             cCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCC
Q 042476          311 SSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAP  353 (433)
Q Consensus       311 ~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~  353 (433)
                        +++|+.|++++|+++ .+|..  ..+++.+++++|.+...|
T Consensus       303 --~~~L~~L~L~~N~L~-~l~~~--~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         303 --PPRLERLIASFNHLA-EVPEL--PQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             --CTTCCEEECCSSCCS-CCCCC--CTTCCEEECCSSCCSSCC
T ss_pred             --cCCCCEEECCCCcCC-ccccc--cCCCCEEECcCCcCCCCC
Confidence              578999999999998 46643  567889999999887654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=2.3e-17  Score=139.30  Aligned_cols=55  Identities=24%  Similarity=0.342  Sum_probs=25.4

Q ss_pred             cccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC
Q 042476          249 ISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF  303 (433)
Q Consensus       249 L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  303 (433)
                      +++|++++..+..|.++++|++|+|++|++++..+++|..+++|++|+|++|.+.
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            3333333333334444445555555555554444444444555555555555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.2e-16  Score=135.14  Aligned_cols=53  Identities=21%  Similarity=0.397  Sum_probs=30.7

Q ss_pred             ceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcC
Q 042476          243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFST  299 (433)
Q Consensus       243 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  299 (433)
                      +|+.+++++|.+++. + .+.++++|++|+|++|+++ .++ .+..+++|+.|+|++
T Consensus       157 ~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         157 KLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccc-c-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            355555555555432 1 2556666777777777665 333 366667777776653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4e-16  Score=133.53  Aligned_cols=165  Identities=24%  Similarity=0.269  Sum_probs=135.3

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      +.+|++|++++|.+++...  +   ..+++|++|++++|.+++..  .+.++++|++|++++|+++. +| .+.++++|+
T Consensus        45 L~~L~~L~l~~~~i~~l~~--l---~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~  115 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG--I---QYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLK  115 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT--G---GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             hcCccEEECcCCCCCCchh--H---hhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccc
Confidence            5679999999999876432  3   45899999999999998643  36789999999999999984 44 588999999


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN  184 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  184 (433)
                      .|++++|.+.. + ..+..++.++.+++++|.+.+ . .... .+++|+++++++|.+.+. + .+.++++|++|++++|
T Consensus       116 ~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~-~-~~~~-~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         116 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             EEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSS
T ss_pred             ccccccccccc-c-ccccccccccccccccccccc-c-cccc-cccccccccccccccccc-c-cccCCCCCCEEECCCC
Confidence            99999998874 3 458889999999999998843 2 3333 689999999999999853 3 4889999999999999


Q ss_pred             cCcccCCCCcccccccccccccc
Q 042476          185 NLSGTIPRCINNFTAMATINSSN  207 (433)
Q Consensus       185 ~~~~~~p~~~~~l~~L~~L~l~~  207 (433)
                      .++ .++ .+.++++|+.|++++
T Consensus       189 ~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         189 HIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             CCC-CCh-hhcCCCCCCEEEccC
Confidence            997 455 588899999988764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=7.6e-16  Score=130.64  Aligned_cols=161  Identities=22%  Similarity=0.319  Sum_probs=129.4

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      ++++++|+++++.++.. . .+   ..+++|++|++++|++++..+  +.++++|++|++++|.+.. ++ .+.++++|+
T Consensus        39 l~~l~~L~l~~~~i~~l-~-~l---~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~  109 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI-D-GV---EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLT  109 (199)
T ss_dssp             HTTCCEEECTTSCCCCC-T-TG---GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred             hcCCCEEECCCCCCCCc-c-cc---ccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccc
Confidence            56899999999998753 1 23   458999999999999986543  8899999999999998874 33 488999999


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN  184 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  184 (433)
                      .|+++++.+...  ..+..+++|+.|++++|.+. .++ .+. .+++|+.|++.+|.+++.  ..++++++|++|++++|
T Consensus       110 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~-~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         110 GLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALS-GLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSN  182 (199)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGT-TCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred             cccccccccccc--cccchhhhhHHhhhhhhhhc-ccc-ccc-ccccccccccccccccCC--ccccCCCCCCEEECCCC
Confidence            999999988743  35788999999999999883 444 343 789999999999998853  35889999999999999


Q ss_pred             cCcccCCCCcccccccccc
Q 042476          185 NLSGTIPRCINNFTAMATI  203 (433)
Q Consensus       185 ~~~~~~p~~~~~l~~L~~L  203 (433)
                      ++++ ++ .+.++++|+.|
T Consensus       183 ~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         183 KVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCCC-CG-GGGGCTTCSEE
T ss_pred             CCCC-Cc-cccCCCCCCcC
Confidence            9873 44 46677777653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-19  Score=175.04  Aligned_cols=309  Identities=18%  Similarity=0.141  Sum_probs=182.3

Q ss_pred             CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCcCcCc----CCcccC-
Q 042476            1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNYFSGD----IPDCWM-   74 (433)
Q Consensus         1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~----~~~~~~-   74 (433)
                      .||+++|++++.    .+..+...++++++|+|++|.++......++.. ..+++|++|+|++|.++..    +...+. 
T Consensus         6 ~ld~~~~~i~~~----~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           6 SLDIQCEELSDA----RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEESCCCCHH----HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             EEEeeCCcCChH----HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            489999999874    111111126789999999999885433333221 4588999999999988632    223333 


Q ss_pred             CCCCCCEEEccCCcCccc----CCcccCCCCCcCEEEccCCcccccC---------------------------------
Q 042476           75 NWPHLQVLNLDDNYFTGN----LPISIGTLSSLRSLHLRNNRLAGIF---------------------------------  117 (433)
Q Consensus        75 ~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~~---------------------------------  117 (433)
                      ...+|++|+|++|.++..    ++.++..+++|++|++++|.+....                                 
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            235799999999998743    4567788899999999999764210                                 


Q ss_pred             CccccCCCCCcEEECcCccccc----------------------------cC----ChhhhhcCCCccEEEeeCccccc-
Q 042476          118 PVSLKNCSSLISLDIGENDFFG----------------------------SI----PTWVGERFPRLLILNLRSNKFNG-  164 (433)
Q Consensus       118 ~~~~~~l~~L~~L~L~~n~~~~----------------------------~~----~~~~~~~l~~L~~L~L~~n~l~~-  164 (433)
                      ...+.....++.++++++....                            ..    ........+.++.+++.+|.+.. 
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            0011223455555555443310                            00    00111246788999999887642 


Q ss_pred             ----cCCccccCCCCcCEEEccCCcCcccC----CCCccccccccccccccccccccccccCCceeeecceeeeccceee
Q 042476          165 ----SLPVQLCHLTFLRILDVAHNNLSGTI----PRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVE  236 (433)
Q Consensus       165 ----~~~~~l~~l~~L~~L~l~~n~~~~~~----p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (433)
                          ...........++.+++++|.+....    ...+...+.++.++++.+...-...               ......
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~---------------~~l~~~  306 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA---------------RLLCET  306 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH---------------HHHHHH
T ss_pred             ccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccc---------------chhhcc
Confidence                12234455678999999998875321    1223445566666665543110000               000000


Q ss_pred             hhhhccceeEEEcccCcccccCCc----cccCCccCceEeCcCcccccC----CCcccC-CCCCCCEEeCcCCcCCCC--
Q 042476          237 YNSILNLVRSIDISKNNFSGEIPM----QLTNLEGLQTLNLSHNFFVGK----IPENIG-NMRSIESLDFSTNRLFGR--  305 (433)
Q Consensus       237 ~~~~~~~L~~L~L~~n~~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~----~~~~l~-~l~~L~~L~Ls~n~l~~~--  305 (433)
                      .......|+.+++++|.++.....    .+...++|++|+|++|+++++    +++.+. ..+.|+.|++++|.++..  
T Consensus       307 l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~  386 (460)
T d1z7xw1         307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC  386 (460)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred             ccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHH
Confidence            111234577788887777644222    223445788888888877543    222232 346688888888877642  


Q ss_pred             --CCccccCCCCCCeeeCcCCcCcc
Q 042476          306 --IPQSMSSLSFLNHLNLSENDLSG  328 (433)
Q Consensus       306 --~~~~l~~l~~L~~L~L~~n~l~~  328 (433)
                        ++..+..+++|++|++++|+++.
T Consensus       387 ~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         387 SSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHHHhcCCCCCEEECCCCcCCH
Confidence              34445666778888888887753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=8.5e-16  Score=130.33  Aligned_cols=48  Identities=27%  Similarity=0.441  Sum_probs=27.4

Q ss_pred             eeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEE
Q 042476          244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESL  295 (433)
Q Consensus       244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  295 (433)
                      ++.|++.+|.+++.  ..+.++++|++|++++|++++ ++ .++.+++|+.|
T Consensus       152 L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         152 LQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ccccccccccccCC--ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            45555555555432  125566777777777777663 32 35566666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4e-17  Score=146.72  Aligned_cols=226  Identities=17%  Similarity=0.194  Sum_probs=131.3

Q ss_pred             cEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCccc-CCcccCCCCCcCEEE
Q 042476           29 GLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGN-LPISIGTLSSLRSLH  107 (433)
Q Consensus        29 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~  107 (433)
                      +.||++++.+.......+.    -..+..+.++...+...... .....+|++|+++++.+... +...+..+++|++|+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~----~~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~   77 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLL----SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS   77 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHH----HTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             CEEECCCCCCCchHHHHHH----hccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCccccc
Confidence            4677777776544333221    12344566665554433222 23455788888888877643 344567788888888


Q ss_pred             ccCCcccccCCccccCCCCCcEEECcCcc-ccccCChhhhhcCCCccEEEeeCcc-cccc-CCcccc-CCCCcCEEEccC
Q 042476          108 LRNNRLAGIFPVSLKNCSSLISLDIGEND-FFGSIPTWVGERFPRLLILNLRSNK-FNGS-LPVQLC-HLTFLRILDVAH  183 (433)
Q Consensus       108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~-~l~~L~~L~l~~  183 (433)
                      ++++.+....+..+..+++|++|+++++. +++..-..+...+++|++|++++|. ++.. +...+. ..++|+.|++++
T Consensus        78 L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~  157 (284)
T d2astb2          78 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  157 (284)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             ccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcc
Confidence            88888776666667778888888888753 4322222334467888888887763 3211 111222 235677777765


Q ss_pred             CcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCc-ccccCCccc
Q 042476          184 NNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNN-FSGEIPMQL  262 (433)
Q Consensus       184 n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~  262 (433)
                      +...  +.                                       ..........+++|++|++++|. ++......+
T Consensus       158 ~~~~--i~---------------------------------------~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l  196 (284)
T d2astb2         158 YRKN--LQ---------------------------------------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  196 (284)
T ss_dssp             CGGG--SC---------------------------------------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             cccc--cc---------------------------------------cccccccccccccccccccccccCCCchhhhhh
Confidence            4211  00                                       00011112335567777777653 554555566


Q ss_pred             cCCccCceEeCcCc-ccccCCCcccCCCCCCCEEeCcCC
Q 042476          263 TNLEGLQTLNLSHN-FFVGKIPENIGNMRSIESLDFSTN  300 (433)
Q Consensus       263 ~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n  300 (433)
                      ..+++|++|+|++| .+++.....++.+++|+.|++++|
T Consensus       197 ~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            66777777777774 455555556666777777777766

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.1e-18  Score=161.70  Aligned_cols=307  Identities=19%  Similarity=0.163  Sum_probs=199.7

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcC----cCCcccCCCCCCCEEEccCCcCccc----CCcccC
Q 042476           27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSG----DIPDCWMNWPHLQVLNLDDNYFTGN----LPISIG   98 (433)
Q Consensus        27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~----~p~~~~   98 (433)
                      +|++||+++|++++..-..+.  ..++++++|+|++|.++.    .+..++..+++|++|+|++|.++..    +...+.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~--~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELL--PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHH--HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHH--HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            689999999999875322221  237899999999998873    3455677899999999999998632    233333


Q ss_pred             -CCCCcCEEEccCCccccc----CCccccCCCCCcEEECcCccccccCChhhh---------------------------
Q 042476           99 -TLSSLRSLHLRNNRLAGI----FPVSLKNCSSLISLDIGENDFFGSIPTWVG---------------------------  146 (433)
Q Consensus        99 -~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~---------------------------  146 (433)
                       ...+|++|++++|.++..    ++..+..+++|++|++++|.+...-...+.                           
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence             235899999999998743    455678899999999999987321100000                           


Q ss_pred             -----hcCCCccEEEeeCcccccc---------------------------------CCccccCCCCcCEEEccCCcCcc
Q 042476          147 -----ERFPRLLILNLRSNKFNGS---------------------------------LPVQLCHLTFLRILDVAHNNLSG  188 (433)
Q Consensus       147 -----~~l~~L~~L~L~~n~l~~~---------------------------------~~~~l~~l~~L~~L~l~~n~~~~  188 (433)
                           .....++.++++.+.....                                 ....+...+.++.+++++|....
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence                 1234566666665543210                                 00112345678888888887632


Q ss_pred             -----cCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcc--
Q 042476          189 -----TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ--  261 (433)
Q Consensus       189 -----~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~--  261 (433)
                           ..+........++.++++.+......                ...........+.++.+++++|.++......  
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~----------------~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKG----------------CGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHH----------------HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccchhhcccccccccccccccccccccccc----------------cccccccccccccccccccccccccccccchhh
Confidence                 12223344567777877766421110                1111222345677999999999986432111  


Q ss_pred             ---ccCCccCceEeCcCcccccCCCcc----cCCCCCCCEEeCcCCcCCCC----CCcccc-CCCCCCeeeCcCCcCccc
Q 042476          262 ---LTNLEGLQTLNLSHNFFVGKIPEN----IGNMRSIESLDFSTNRLFGR----IPQSMS-SLSFLNHLNLSENDLSGQ  329 (433)
Q Consensus       262 ---~~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~Ls~n~l~~~----~~~~l~-~l~~L~~L~L~~n~l~~~  329 (433)
                         ......|+.+++++|.++......    +...++|+.|+|++|++++.    ++..+. ..+.|++|++++|.++..
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence               123468999999999987554333    34557899999999998643    333332 467799999999999742


Q ss_pred             ----CCC-CcccCccCcccccCCcCCC
Q 042476          330 ----IPS-STQLQSFGASCFSGNDLCG  351 (433)
Q Consensus       330 ----~p~-~~~~~~l~~~~~~~n~l~~  351 (433)
                          +.. ....+.++.+++++|.+..
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence                111 1234678999999998754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.4e-16  Score=139.80  Aligned_cols=182  Identities=15%  Similarity=0.185  Sum_probs=111.4

Q ss_pred             CCCcCEEEccCCccccc-CCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc-cccc-CCccccCCCCc
Q 042476          100 LSSLRSLHLRNNRLAGI-FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK-FNGS-LPVQLCHLTFL  176 (433)
Q Consensus       100 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L  176 (433)
                      ..+|++|+++++.+... ++..+..+++|++|+++++.+.+..+..+. .+++|++|++++|. ++.. +......+++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhc
Confidence            34666666666655422 233355566666666666655444444444 45666666666642 3211 11112345566


Q ss_pred             CEEEccCCc-CcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCc--
Q 042476          177 RILDVAHNN-LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNN--  253 (433)
Q Consensus       177 ~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~--  253 (433)
                      ++|++++|. +++.                                          +........++.|+.|+++++.  
T Consensus       124 ~~L~ls~c~~~~~~------------------------------------------~~~~~~~~~~~~L~~L~l~~~~~~  161 (284)
T d2astb2         124 DELNLSWCFDFTEK------------------------------------------HVQVAVAHVSETITQLNLSGYRKN  161 (284)
T ss_dssp             CEEECCCCTTCCHH------------------------------------------HHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             cccccccccccccc------------------------------------------cchhhhcccccccchhhhcccccc
Confidence            666665542 2100                                          0000011224578999998753  


Q ss_pred             cccc-CCccccCCccCceEeCcCcc-cccCCCcccCCCCCCCEEeCcCC-cCCCCCCccccCCCCCCeeeCcCC
Q 042476          254 FSGE-IPMQLTNLEGLQTLNLSHNF-FVGKIPENIGNMRSIESLDFSTN-RLFGRIPQSMSSLSFLNHLNLSEN  324 (433)
Q Consensus       254 ~~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n  324 (433)
                      ++.. +.....++++|++|++++|. +++.....+..+++|++|++++| .+++.....+.++++|+.|+++++
T Consensus       162 i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3322 23334568999999999864 77777888889999999999996 677666667888999999999987

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=118.60  Aligned_cols=108  Identities=18%  Similarity=0.123  Sum_probs=52.4

Q ss_pred             CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476           52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD  131 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  131 (433)
                      ..++++|+|++|+|+. ++..+..+++|+.|+|++|.+.. + +.|..+++|++|++++|.++...+..+..+++|++|+
T Consensus        17 ~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            3445555555555543 23444445555555555555552 2 2345555555555555555544444444555555555


Q ss_pred             CcCccccccCCh-hhhhcCCCccEEEeeCcccc
Q 042476          132 IGENDFFGSIPT-WVGERFPRLLILNLRSNKFN  163 (433)
Q Consensus       132 L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~  163 (433)
                      +++|.+. .++. .....+++|++|++++|.++
T Consensus        94 L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          94 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ecccccc-ccccccccccccccchhhcCCCccc
Confidence            5555542 2221 11224555555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=4.2e-14  Score=109.53  Aligned_cols=119  Identities=24%  Similarity=0.380  Sum_probs=70.5

Q ss_pred             cEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEc
Q 042476           29 GLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHL  108 (433)
Q Consensus        29 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L  108 (433)
                      |+|++++|+++.. + .+   ..+++|++|++++|.++ .+|..|..+++|++|++++|.++. +| .+.++++|++|++
T Consensus         1 R~L~Ls~n~l~~l-~-~l---~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HL---EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSSC-C-CG---GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCCCC-c-cc---ccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEEC
Confidence            4566666666532 2 23   33666777777777666 345566667777777777777663 33 3666677777777


Q ss_pred             cCCcccccCC-ccccCCCCCcEEECcCccccc--cCChhhhhcCCCccEE
Q 042476          109 RNNRLAGIFP-VSLKNCSSLISLDIGENDFFG--SIPTWVGERFPRLLIL  155 (433)
Q Consensus       109 ~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L  155 (433)
                      ++|++..... ..+..+++|++|++++|++..  ..+..+...+|+|+.+
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            7777664322 345666677777777766632  2234444445665554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1e-14  Score=118.82  Aligned_cols=129  Identities=16%  Similarity=0.147  Sum_probs=107.2

Q ss_pred             ccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCC
Q 042476           72 CWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPR  151 (433)
Q Consensus        72 ~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  151 (433)
                      .|.+..++++|+|++|+|+ .++..+..+++|++|++++|.++..  +.+..+++|++|++++|.+ ..++..++..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccc-cCCCccccccccc
Confidence            3567889999999999999 4577778899999999999999855  3588999999999999999 5677777668999


Q ss_pred             ccEEEeeCccccccCC-ccccCCCCcCEEEccCCcCcccCCC----Ccccccccccccc
Q 042476          152 LLILNLRSNKFNGSLP-VQLCHLTFLRILDVAHNNLSGTIPR----CINNFTAMATINS  205 (433)
Q Consensus       152 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~----~~~~l~~L~~L~l  205 (433)
                      |++|++++|.+..... ..+..+++|++|++++|.++ ..|.    .+..+++|+.|+-
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            9999999999974321 46789999999999999987 4443    4677888887763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=1.7e-15  Score=140.02  Aligned_cols=238  Identities=14%  Similarity=0.167  Sum_probs=122.2

Q ss_pred             CCCccEEEcCCCcCcCc----CCcccCCCCCCCEEEccCCcCccc----------CCcccCCCCCcCEEEccCCccccc-
Q 042476           52 KSVIISLKLSKNYFSGD----IPDCWMNWPHLQVLNLDDNYFTGN----------LPISIGTLSSLRSLHLRNNRLAGI-  116 (433)
Q Consensus        52 ~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----------~p~~~~~l~~L~~L~L~~n~l~~~-  116 (433)
                      ...++.|+|++|.+...    +...+...+.|+.++++++.....          +..++...++|+.|++++|.+... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            44455555555544321    222334445555555554432210          122344455666666666655432 


Q ss_pred             ---CCccccCCCCCcEEECcCccccccCCh------------hhhhcCCCccEEEeeCcccccc----CCccccCCCCcC
Q 042476          117 ---FPVSLKNCSSLISLDIGENDFFGSIPT------------WVGERFPRLLILNLRSNKFNGS----LPVQLCHLTFLR  177 (433)
Q Consensus       117 ---~~~~~~~l~~L~~L~L~~n~~~~~~~~------------~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~  177 (433)
                         +...+..+++|++|++++|.+...-..            ......+.|+.+.+++|.+...    +...+...+.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               222234456666666666654211000            0112355677777777665421    223345566777


Q ss_pred             EEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCccccc
Q 042476          178 ILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGE  257 (433)
Q Consensus       178 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~  257 (433)
                      .|++++|.+...-...  .+.                                     ......+.|+.|++++|.++..
T Consensus       190 ~L~L~~n~i~~~g~~~--~l~-------------------------------------~~l~~~~~L~~L~Ls~N~i~~~  230 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEH--LLL-------------------------------------EGLAYCQELKVLDLQDNTFTHL  230 (344)
T ss_dssp             EEECCSSCCCHHHHHH--HHH-------------------------------------TTGGGCTTCCEEECCSSCCHHH
T ss_pred             cccccccccccccccc--chh-------------------------------------hhhcchhhhccccccccccccc
Confidence            7777777664210000  000                                     0011234466677777766432


Q ss_pred             ----CCccccCCccCceEeCcCcccccCCCcc----cC--CCCCCCEEeCcCCcCCCC----CCcccc-CCCCCCeeeCc
Q 042476          258 ----IPMQLTNLEGLQTLNLSHNFFVGKIPEN----IG--NMRSIESLDFSTNRLFGR----IPQSMS-SLSFLNHLNLS  322 (433)
Q Consensus       258 ----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----l~--~l~~L~~L~Ls~n~l~~~----~~~~l~-~l~~L~~L~L~  322 (433)
                          +...+..+++|++|+|++|.+++.....    +.  ..+.|+.|++++|+++..    +...+. +++.|+.|+++
T Consensus       231 g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~  310 (344)
T d2ca6a1         231 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN  310 (344)
T ss_dssp             HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             ccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECC
Confidence                3344556777888888888776442222    22  235688888888887542    223332 46778888888


Q ss_pred             CCcCcc
Q 042476          323 ENDLSG  328 (433)
Q Consensus       323 ~n~l~~  328 (433)
                      +|++..
T Consensus       311 ~N~~~~  316 (344)
T d2ca6a1         311 GNRFSE  316 (344)
T ss_dssp             TSBSCT
T ss_pred             CCcCCC
Confidence            888764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=5.9e-14  Score=108.67  Aligned_cols=102  Identities=23%  Similarity=0.282  Sum_probs=74.2

Q ss_pred             cEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCc
Q 042476           56 ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN  135 (433)
Q Consensus        56 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  135 (433)
                      |.|++++|+++. ++ .+..+++|++|++++|.++ .+|..|..+++|+.|++++|.+++. | .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            567888888873 34 3677888888888888887 5677788888888888888888743 3 4777888888888888


Q ss_pred             cccccCCh-hhhhcCCCccEEEeeCcccc
Q 042476          136 DFFGSIPT-WVGERFPRLLILNLRSNKFN  163 (433)
Q Consensus       136 ~~~~~~~~-~~~~~l~~L~~L~L~~n~l~  163 (433)
                      ++. .++. .....+++|++|++++|.++
T Consensus        76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccC-CCCCchhhcCCCCCCEEECCCCcCC
Confidence            773 3332 22336777888888777776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=3.9e-15  Score=137.58  Aligned_cols=239  Identities=19%  Similarity=0.165  Sum_probs=139.4

Q ss_pred             CCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCcCcCc----------CCcccCCCCCCCEEEccCCcCccc-
Q 042476           25 PFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNYFSGD----------IPDCWMNWPHLQVLNLDDNYFTGN-   92 (433)
Q Consensus        25 ~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~n~i~~~-   92 (433)
                      ..+++.|+|++|.++......++.. ...+.|+.++++++.....          +...+..+++|++|+|++|.+... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            5568888888887765544444332 4567788888876643311          123344567788888888877643 


Q ss_pred             ---CCcccCCCCCcCEEEccCCcccccCC----c---------cccCCCCCcEEECcCcccccc----CChhhhhcCCCc
Q 042476           93 ---LPISIGTLSSLRSLHLRNNRLAGIFP----V---------SLKNCSSLISLDIGENDFFGS----IPTWVGERFPRL  152 (433)
Q Consensus        93 ---~p~~~~~l~~L~~L~L~~n~l~~~~~----~---------~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L  152 (433)
                         +...+...++|++|++++|.+...-.    .         .....+.|+.+++++|.+...    +...+ ...+.|
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l-~~~~~L  188 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF-QSHRLL  188 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH-HHCTTC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh-hhhhhh
Confidence               23334556778888888776542100    0         113456778888887766322    11122 246778


Q ss_pred             cEEEeeCcccccc-----CCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecce
Q 042476          153 LILNLRSNKFNGS-----LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDAS  227 (433)
Q Consensus       153 ~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  227 (433)
                      ++|++++|.+...     +...+..+++|+.|++++|.++......+                                 
T Consensus       189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L---------------------------------  235 (344)
T d2ca6a1         189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL---------------------------------  235 (344)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH---------------------------------
T ss_pred             cccccccccccccccccchhhhhcchhhhcccccccccccccccccc---------------------------------
Confidence            8888888776532     23445667778888888777642110000                                 


Q ss_pred             eeeccceeehhhhccceeEEEcccCcccccC----Ccccc--CCccCceEeCcCcccccCC----CcccC-CCCCCCEEe
Q 042476          228 VVTKGLLVEYNSILNLVRSIDISKNNFSGEI----PMQLT--NLEGLQTLNLSHNFFVGKI----PENIG-NMRSIESLD  296 (433)
Q Consensus       228 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~~~--~l~~L~~L~Ls~n~l~~~~----~~~l~-~l~~L~~L~  296 (433)
                             ......+++|++|++++|.++...    ...+.  ..+.|++|++++|+++...    ...+. ..++|+.|+
T Consensus       236 -------~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~  308 (344)
T d2ca6a1         236 -------AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  308 (344)
T ss_dssp             -------HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             -------cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEE
Confidence                   111223456777888888776432    11222  2356788888888775432    22222 356788888


Q ss_pred             CcCCcCCC
Q 042476          297 FSTNRLFG  304 (433)
Q Consensus       297 Ls~n~l~~  304 (433)
                      +++|++..
T Consensus       309 l~~N~~~~  316 (344)
T d2ca6a1         309 LNGNRFSE  316 (344)
T ss_dssp             CTTSBSCT
T ss_pred             CCCCcCCC
Confidence            88887753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-11  Score=99.86  Aligned_cols=88  Identities=19%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             cceeEEEcccC-cccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeee
Q 042476          242 NLVRSIDISKN-NFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLN  320 (433)
Q Consensus       242 ~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  320 (433)
                      ++|++|++++| .++...+..|.++++|+.|+|++|+++...+.+|..+++|+.|+|++|+++...+..+... +|+.|+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccc
Confidence            44677777655 4666666778899999999999999987778889999999999999999985555556544 699999


Q ss_pred             CcCCcCcccC
Q 042476          321 LSENDLSGQI  330 (433)
Q Consensus       321 L~~n~l~~~~  330 (433)
                      |++|++.+..
T Consensus       110 L~~Np~~C~C  119 (156)
T d2ifga3         110 LSGNPLHCSC  119 (156)
T ss_dssp             CCSSCCCCCG
T ss_pred             cCCCcccCCc
Confidence            9999997643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.8e-11  Score=98.48  Aligned_cols=102  Identities=18%  Similarity=0.117  Sum_probs=48.3

Q ss_pred             EEcCCCcCcCcCCcccCCCCCCCEEEccCC-cCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCcc
Q 042476           58 LKLSKNYFSGDIPDCWMNWPHLQVLNLDDN-YFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEND  136 (433)
Q Consensus        58 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  136 (433)
                      ++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|++++|.|+.+.+.+|..+++|++|+|++|+
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            444444433 23344444555555555433 3443334445555555555555555554445555555555555555555


Q ss_pred             ccccCChhhhhcCCCccEEEeeCccc
Q 042476          137 FFGSIPTWVGERFPRLLILNLRSNKF  162 (433)
Q Consensus       137 ~~~~~~~~~~~~l~~L~~L~L~~n~l  162 (433)
                      + ..+|..++. ..+|++|+|++|.+
T Consensus        92 l-~~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          92 L-ESLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             C-SCCCSTTTC-SCCCCEEECCSSCC
T ss_pred             C-cccChhhhc-cccccccccCCCcc
Confidence            5 244444442 22444444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=1.4e-13  Score=115.86  Aligned_cols=111  Identities=23%  Similarity=0.187  Sum_probs=57.1

Q ss_pred             cccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCC
Q 042476           71 DCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP  150 (433)
Q Consensus        71 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  150 (433)
                      ..+..+++|++|+|++|.++ .++ .+.++++|++|++++|.++. +|.....+++|++|++++|.+. .++ .+. .++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~-~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SLS-GIE-KLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECC-CHH-HHH-HHH
T ss_pred             hHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccccc-cccccccccccccccccccccc-ccc-ccc-ccc
Confidence            34555555666666665555 222 35555566666666665552 3333333445666666666552 222 222 455


Q ss_pred             CccEEEeeCccccccCC-ccccCCCCcCEEEccCCcCc
Q 042476          151 RLLILNLRSNKFNGSLP-VQLCHLTFLRILDVAHNNLS  187 (433)
Q Consensus       151 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~  187 (433)
                      +|+.|++++|.++.... ..+..+++|+.|++++|.+.
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccc
Confidence            66666666665542211 24555666666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=2.1e-13  Score=114.82  Aligned_cols=144  Identities=17%  Similarity=0.164  Sum_probs=104.7

Q ss_pred             CccEEEccCCc--ccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476           27 EFGLLDLSNNA--LSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR  104 (433)
Q Consensus        27 ~L~~L~l~~n~--l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  104 (433)
                      .++.++++++-  +. ..+..+   ..+++|++|++++|+|+.. + .+.++++|++|++++|.++ .+|..+..+++|+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl---~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~   96 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATL---STLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE   96 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHH---HHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCC
T ss_pred             ccceeeeecccCchh-hhhhHH---hcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccc
Confidence            35556665431  11 122334   4488999999999999853 3 5888999999999999988 5665555667899


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEECcCccccccCCh-hhhhcCCCccEEEeeCccccccCCcc----------ccCC
Q 042476          105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPT-WVGERFPRLLILNLRSNKFNGSLPVQ----------LCHL  173 (433)
Q Consensus       105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----------l~~l  173 (433)
                      +|++++|.++..  +.+..+++|++|++++|.+. .++. ..+..+++|+.|++++|.+....+..          +..+
T Consensus        97 ~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~l  173 (198)
T d1m9la_          97 ELWISYNQIASL--SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             EEECSEEECCCH--HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHC
T ss_pred             cccccccccccc--ccccccccccccccccchhc-cccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHC
Confidence            999999999854  35778899999999999884 4432 23447999999999999887443322          4567


Q ss_pred             CCcCEEE
Q 042476          174 TFLRILD  180 (433)
Q Consensus       174 ~~L~~L~  180 (433)
                      ++|+.||
T Consensus       174 p~L~~LD  180 (198)
T d1m9la_         174 PNLKKLD  180 (198)
T ss_dssp             SSCCEES
T ss_pred             CCcCEeC
Confidence            7888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=9.7e-09  Score=82.70  Aligned_cols=65  Identities=25%  Similarity=0.226  Sum_probs=30.2

Q ss_pred             CCCCCcCEEEccCCcccccC--CccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcccc
Q 042476           98 GTLSSLRSLHLRNNRLAGIF--PVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN  163 (433)
Q Consensus        98 ~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  163 (433)
                      ..+++|++|++++|+|+...  +..+..+++|+.|++++|.+. .++........+|+.|++++|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            34555555555555555321  223444555555555555552 333222213344555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=3e-07  Score=73.67  Aligned_cols=88  Identities=25%  Similarity=0.245  Sum_probs=63.1

Q ss_pred             CCcccCCCCCCCEEEccCCcCcccC--CcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCCh---
Q 042476           69 IPDCWMNWPHLQVLNLDDNYFTGNL--PISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPT---  143 (433)
Q Consensus        69 ~~~~~~~l~~L~~L~L~~n~i~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---  143 (433)
                      ++..+..++.|++|+|++|+++...  +..+..+++|+.|++++|.++...+-.+.....|++|++++|++......   
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            3444456888999999999988532  34567788999999999998865443444556789999999988543321   


Q ss_pred             ---hhhhcCCCccEEE
Q 042476          144 ---WVGERFPRLLILN  156 (433)
Q Consensus       144 ---~~~~~l~~L~~L~  156 (433)
                         .+...+|+|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               3345789999885

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.98  E-value=8.1e-07  Score=71.47  Aligned_cols=87  Identities=22%  Similarity=0.268  Sum_probs=40.7

Q ss_pred             CCccEEEccCC-cccccCCccccCC-CCCCCccEEEcCCCcCcCc----CCcccCCCCCCCEEEccCCcCccc----CCc
Q 042476           26 FEFGLLDLSNN-ALSGSIIHLICNG-DNKSVIISLKLSKNYFSGD----IPDCWMNWPHLQVLNLDDNYFTGN----LPI   95 (433)
Q Consensus        26 ~~L~~L~l~~n-~l~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~p~   95 (433)
                      ++|++|+|+++ .++......++.. ...+.|++|+|++|.+...    +...+...+.|++|+|++|.+...    +..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            45666666653 3443322222111 3345566666666655421    122233345556666666555532    222


Q ss_pred             ccCCCCCcCEEEccCCc
Q 042476           96 SIGTLSSLRSLHLRNNR  112 (433)
Q Consensus        96 ~~~~l~~L~~L~L~~n~  112 (433)
                      ++...++|++|++++|.
T Consensus        95 aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          95 STLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HTTTTCCCSEEECCCCS
T ss_pred             HHHhCCcCCEEECCCCc
Confidence            34444555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.71  E-value=8.3e-06  Score=65.28  Aligned_cols=16  Identities=6%  Similarity=-0.014  Sum_probs=8.2

Q ss_pred             cccCCCCcCEEEccCC
Q 042476          169 QLCHLTFLRILDVAHN  184 (433)
Q Consensus       169 ~l~~l~~L~~L~l~~n  184 (433)
                      .+...++|+.|+++.+
T Consensus       126 ~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         126 AIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHCSSCCEEECCCC
T ss_pred             HHHhCCCccEeeCcCC
Confidence            3344455666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.31  E-value=1.1e-05  Score=64.55  Aligned_cols=13  Identities=15%  Similarity=0.158  Sum_probs=6.7

Q ss_pred             cCCCccEEEeeCc
Q 042476          148 RFPRLLILNLRSN  160 (433)
Q Consensus       148 ~l~~L~~L~L~~n  160 (433)
                      ..++|++|++..+
T Consensus       130 ~n~~L~~L~l~~~  142 (166)
T d1io0a_         130 KNTTLLKFGYHFT  142 (166)
T ss_dssp             HCSSCCEEECCCS
T ss_pred             hCCCcCEEeCcCC
Confidence            3455555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.02  E-value=8.8e-05  Score=58.99  Aligned_cols=89  Identities=18%  Similarity=0.126  Sum_probs=39.0

Q ss_pred             cCCCCCcCEEEccCCccccc----CCccccCCCCCcEEECcCccccccCChhhh---hcCCCccEEEee--Cccccc---
Q 042476           97 IGTLSSLRSLHLRNNRLAGI----FPVSLKNCSSLISLDIGENDFFGSIPTWVG---ERFPRLLILNLR--SNKFNG---  164 (433)
Q Consensus        97 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~---~~l~~L~~L~L~--~n~l~~---  164 (433)
                      +...++|++|++++|.+...    +...+...+.++.++++++.+....-..+.   ...++|+.++|.  +|.+..   
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            33444555555555544321    112233445555555555544221111111   134455554443  333331   


Q ss_pred             -cCCccccCCCCcCEEEccCCc
Q 042476          165 -SLPVQLCHLTFLRILDVAHNN  185 (433)
Q Consensus       165 -~~~~~l~~l~~L~~L~l~~n~  185 (433)
                       .+...+...++|++|++..+.
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCCCcCEEeCcCCC
Confidence             123344556677777776543