Citrus Sinensis ID: 042480

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MDITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYFLDNIL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHcccHHHHHHHHHccHHHHHHHccHHHHHHHccccHHHHHHcccccccccccccHHHHHHccccccEEccccccEEccccccccEEEEEcccccEEEcccccccEEEEccccccccccEEEEEEEEEEEEEEEEEEccccccEEEEEEEEEEccccccccccEEEEEEEEcccEEEEEEEEEEccccccccccccccccEEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccHccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHHccccccccccccHHHHHHHHccccEEEccccEEEEEEcccccEEEEEEccEEEEEEccccccEEEcccccccHHHHHHHHHEEEEEEEEEEcccccccccEEEEEEEEEEccccccccccEEEEEEEEcccccEEEEEEEEccccccccccccccccEEEEEEccEEcccccccc
Coil and Loop (DISEMBL)
mditnalpVECISHIISLTTPRDACRLAAVSHIFKsaadsdlvwekflpsdykliisnsvsssslstslpkkdlyfhlchypvfinnctmSFALEKetgkkcymvGARGLCIEWGSTANFWKWtslsksrfpevAELVYFWFFEVNARIETRILSNRTNYAAYLVFKfgkstdgfgstllasgvyvegindeerqglfldpsrntpqlfhdrrDGWMEIEMADKCNYFLDNIL
Flexible Loop (DISEMBL)
MDITNALPVECISHIISLTTPRDACRLAAVSHIFksaadsdlvWEKFLPSDYKLIISNSVSSSSLSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEErqglfldpsrntpqLFHDRRDGWMEIEMADKCNYFLDNIL
Low Complexity Region (SEG)
MDITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIIsnsvsssslstsLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYFLDNIL
Disordered region (IsUnstruct)
****NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNS**********PKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGLFLD*****PQLFHDRRDGWMEIEMADKCNYFLD***
Disordered Region (DISOPRED)
**ITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLI*******************YFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGL*****************GWMEIEMADKCNYFLDN**
Disordered Region (DISEMBL)
MDITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNS********SLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYFLDNIL
Disordered Region (DISPRO)
***TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYFLDNIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q949S5	257	F-box protein PP2-B11 OS=	yes	no	0.914	0.828	0.424	1e-43
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.914	0.665	0.407	2e-43
Q9ZVQ6	272	F-box protein PP2-B10 OS=	no	no	0.914	0.783	0.418	1e-42
Q9ZVR5	310	Putative F-box protein PP	no	no	0.905	0.680	0.422	5e-42
Q9FLU7	251	Putative F-box protein PP	no	no	0.879	0.816	0.424	2e-41
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.914	0.698	0.393	1e-37
Q9FV02	294	F-box protein SKIP3 OS=Ar	no	no	0.888	0.704	0.409	1e-35
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.746	0.517	0.436	3e-35
Q9ZVR0	307	Putative F-box protein PP	no	no	0.909	0.690	0.374	2e-34
O80494	289	F-box protein PP2-B15 OS=	no	no	0.909	0.733	0.349	5e-32

>sp|Q949S5|P2B11_ARATH F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 128/224 (57%), Gaps = 11/224 (4%)

Query: 5   NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           N LP +CI+ I+SLTTP D CRL+AVS IF+SAA SD VW  FLP+D+    +   + + 
Sbjct: 2   NNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFP---AGFAAPAG 58

Query: 65  LSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWT 124
           L T   +K L+F L   P+ IN   +SF+LE+++G KCYM+ AR L I WG    +W W 
Sbjct: 59  LPT---RKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWI 115

Query: 125 SLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGF-----GSTL 179
           SL  +RF EVAEL+  W+ E+  +I   +LS+ T YAAY VFK+  S  GF      S +
Sbjct: 116 SLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFRQPVETSLV 175

Query: 180 LASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMAD 223
           LA     + +       L  D      Q    RRDGW E+E+  
Sbjct: 176 LADTESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQ 219

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 13/226 (5%)

Query: 5   NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           + LP +CIS+IIS T+PRDAC  A+VS  F+SA  SD VW+KFLP +Y+ ++S S   +S
Sbjct: 62  DVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFAS 121

Query: 65  LSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWT 124
                 KK+LYF LCH PV I +   SF LEK +GK+C M+ ++ L I WGS+  +W+W 
Sbjct: 122 ------KKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWI 175

Query: 125 SLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGV 184
           S+ +SRF ++AEL+   +FE+  +   R+LS  T Y+AY+VFK      G G   +  G+
Sbjct: 176 SIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGL 235

Query: 185 YVEGINDEERQGLFLDPSRNTPQLF-------HDRRDGWMEIEMAD 223
            + G    +R   F+ P     +           R DGWME E+ +
Sbjct: 236 GLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGE 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  173 bits (438), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/222 (41%), Positives = 128/222 (57%), Gaps = 9/222 (4%)

Query: 5   NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           ++ P +CIS+IIS T PRDAC  A VS  F+S   SD++WEKFLP+DY+ +I  S   SS
Sbjct: 15  DSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS 74

Query: 65  LSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWT 124
                 KK+LYF LC+ PV  ++   S  LEK +GK+C M+ A  L I WG    +W+W 
Sbjct: 75  ------KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWI 128

Query: 125 SLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGV 184
            + +SRF +VA+L    +FE+  R  TR+LS RT Y+AY+VFK      GF +  + + V
Sbjct: 129 PIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAV 188

Query: 185 YVEGINDEERQGLFLDPSRNTPQLF---HDRRDGWMEIEMAD 223
            V G     R   F +  R   +       R DGWMEIE+ +
Sbjct: 189 GVVGQEPSRRLICFSEAIRRGRRNVVKPKQREDGWMEIELGE 230

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR5|PP2B2_ARATH Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=4 SV=2

 Score =  171 bits (432), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 131/225 (58%), Gaps = 14/225 (6%)

Query: 7   LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLS 66
           LP +CIS+IIS T+PRDAC  A+VS  F+SA +SD VW+KFLPSDY  ++  S   SS  
Sbjct: 50  LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSS-- 107

Query: 67  TSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGA-RGLCIEWGSTANFWKWTS 125
               KK+LYF +C  PV + +   SF LEKE GKKC+M+   + + I W ST  +W+W S
Sbjct: 108 ----KKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWIS 163

Query: 126 LSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVY 185
           + ++RF EV EL+   +FEV   + T+ LS  T Y+AY+VFK        G   + + V 
Sbjct: 164 IPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVG 223

Query: 186 VEGINDEERQGLFLDPS-----RNTPQLFH--DRRDGWMEIEMAD 223
           + G    +R   F+ PS     R T  +     R+DGWME E+  
Sbjct: 224 LVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQ 268

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/219 (42%), Positives = 126/219 (57%), Gaps = 14/219 (6%)

Query: 7   LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLS 66
           LP ECI+ +IS T+P DACR++AVS + +SAADS+  WE+FLPSDY++ I NS+S  S  
Sbjct: 6   LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSRFS-- 63

Query: 67  TSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSL 126
                K L+   C  P+ I +   SF +EK +GKKC+M+ AR L I W  +  FW W S+
Sbjct: 64  ----NKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSI 119

Query: 127 SKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYV 186
             SRF EVA L+   +FE+  +I T +LS  TNY+AYLVFK  +    FG   L   V  
Sbjct: 120 PDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFK-EQEMGSFGFESLPLEVSF 178

Query: 187 EGINDE--ERQGLFLDPSRNTPQLFHDRRDGWMEIEMAD 223
                E    + +FL            R DGW+EIE+ +
Sbjct: 179 RSTRTEVYNNRRVFLKSGTQ-----ESREDGWLEIELGE 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/229 (39%), Positives = 132/229 (57%), Gaps = 16/229 (6%)

Query: 7   LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLS 66
           LP EC+S I+S T+P+DAC LA+VS  F SA  SD+VWEKF+P +Y+ +IS S +   LS
Sbjct: 39  LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFLS 98

Query: 67  TSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSL 126
               KK+LYF LC   V I++   S  +EK   K+C M+ A  L I WG++   W+W   
Sbjct: 99  ----KKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPD 154

Query: 127 SKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYV 186
            ++RF  VAEL+    FE+  RI +R++S +T Y+AY+V+K      GF +  +   V V
Sbjct: 155 PQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGV 214

Query: 187 EGINDEE--RQGLFLDPSRNTPQLFHD----------RRDGWMEIEMAD 223
            G + EE  R+ +  D + +      D          R+DGWMEI++ +
Sbjct: 215 VGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGE 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FV02|SKIP3_ARATH F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/232 (40%), Positives = 126/232 (54%), Gaps = 25/232 (10%)

Query: 5   NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           ++LP  CIS+IIS T+P DAC  AAVS IF+SA  SD+VWEKFLP+DY+ +I+ S   SS
Sbjct: 25  DSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSRVFSS 84

Query: 65  LSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCI-EWGSTANFWKW 123
                 KK+LYF LC+ P+ I +  MS  LEK +GK+C M+ A  + +      +  + W
Sbjct: 85  ------KKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLW 138

Query: 124 TSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASG 183
               +SRF  VA L   + FE N R+ TR+LS RT Y+ Y+VFK   +  GF       G
Sbjct: 139 IPCPESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGF------KG 192

Query: 184 VYVE---GINDEER---------QGLFLDPSRNTPQLFHDRRDGWMEIEMAD 223
           V +E   GI  EE           G      R        R DGWME E+ +
Sbjct: 193 VSIEAVVGIVGEESFRSFICFDTHGKGQARKRKVVAKPELREDGWMETEIGE 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score =  148 bits (374), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 7/181 (3%)

Query: 5   NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           +ALP +CIS +IS T+PRDAC +A+VS   KSAA SDLVWE FLPS+Y  ++  S     
Sbjct: 33  DALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQS----- 87

Query: 65  LSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWT 124
            +  L KK+++  L    V + N   SF +EK +GKKCYM+ A  L I WG +  +WKW 
Sbjct: 88  -ANHLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWI 146

Query: 125 SLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTD-GFGSTLLASG 183
           ++ +S+F +VAEL    +FEV  +I   +LS  T+Y+ Y+VFK       GF    + +G
Sbjct: 147 TVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAG 206

Query: 184 V 184
           V
Sbjct: 207 V 207

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR0|PP2B6_ARATH Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=4 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 124/227 (54%), Gaps = 15/227 (6%)

Query: 5   NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           + LP +CIS+IIS T+PRD C  A+VS  F  A   D +WEKFLPS+Y+ +I      SS
Sbjct: 46  DDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRVFSS 105

Query: 65  LSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWT 124
                 KKDLYF LC+ PV + +   SF LE  +GKKC ++ A+ L I  G+   +W+W 
Sbjct: 106 ------KKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWI 159

Query: 125 SLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGV 184
            L +S F +V EL+    F++   + T+ILS  T+Y+ Y+V+K      G     +  GV
Sbjct: 160 ELCESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGV 219

Query: 185 YVEGINDEERQGLFLDPSRNTPQLF--------HDRRDGWMEIEMAD 223
             +G  +  +Q +  D S +  + +          R DGWME E+ D
Sbjct: 220 GFKG-QEMPKQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGD 265

Arabidopsis thaliana (taxid: 3702)

>sp|O80494|P2B15_ARATH F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2

 Score =  137 bits (346), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 128/243 (52%), Gaps = 31/243 (12%)

Query: 7   LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLS 66
           LP  C++ I+S TTP D    AAVS +F+ A DSD VWEKFLP+DY  +IS S     + 
Sbjct: 3   LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRIF 62

Query: 67  TSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSL 126
           +S  KK+LY  LC   + I+N    F +EK +GK  Y++ +R L I W    ++W W+  
Sbjct: 63  SS--KKELYRCLCE-SILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPR 119

Query: 127 SKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYV 186
           S SRF E  +L+   + E+  +I+T  LS  TNY AYL+ K   ++  +G  L+ +   +
Sbjct: 120 SDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKV--TSRAYGLDLVPAETSI 177

Query: 187 EGINDEER-QGLFLDPSRNTPQ----LFHDRR---------------------DGWMEIE 220
           +  N E++ +  +L    N  Q    +F+ +R                     DGWMEIE
Sbjct: 178 KVGNGEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSHRREPEVRDDGWMEIE 237

Query: 221 MAD 223
           + +
Sbjct: 238 LGE 240

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
118485882	267	unknown [Populus trichocarpa]	0.978	0.853	0.548	4e-61
224053426	243	f-box family protein [Populus trichocarp	0.884	0.847	0.519	5e-55
449433185	267	PREDICTED: putative F-box protein PP2-B1	0.987	0.861	0.491	7e-54
449487520	268	PREDICTED: putative F-box protein PP2-B1	0.987	0.858	0.478	3e-49
449432438	268	PREDICTED: putative F-box protein PP2-B1	0.987	0.858	0.478	5e-49
225470210	349	PREDICTED: F-box protein PP2-B1 [Vitis v	0.879	0.587	0.483	6e-48
296088854	287	unnamed protein product [Vitis vinifera]	0.931	0.756	0.458	8e-48
449518583	267	PREDICTED: putative F-box protein PP2-B1	0.987	0.861	0.466	1e-47
296088861	312	unnamed protein product [Vitis vinifera]	0.974	0.727	0.427	2e-45
225470220	277	PREDICTED: F-box protein PP2-B10-like [V	0.927	0.779	0.436	2e-44

>gi|118485882|gb|ABK94787.1| unknown [Populus trichocarpa]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 129/235 (54%), Positives = 160/235 (68%), Gaps = 7/235 (2%)

Query: 1   MDITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSV 60
           MD++  LP EC++HIIS T+PRDAC  A VS  F+SAADSD VW+ FLPSD+  IIS+S 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 61  SSSSLS-TSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTAN 119
           +SSS   T+L KK+LYFHLC+ P+ +NN  MSFALEK  GKKCYM+GARGL I WG T +
Sbjct: 61  ASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDTPD 120

Query: 120 FWKWTSL-SKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGST 178
           +W W  L  +SRF EVAEL Y W+ +V  RI+ +I S +T YAAYLVFK   ST GF   
Sbjct: 121 YWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDER 180

Query: 179 LLASGVYVEGINDEERQGLFLD--PSRNTPQLFHDRRDGWMEIEMADKCNYFLDN 231
           L+   V  E    EE+  +FLD  P  + P L  +R DGWMEIEM +   +F DN
Sbjct: 181 LVELSVNFEESVGEEKLHVFLDVPPDYDMPPLPRERSDGWMEIEMGE---FFYDN 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053426|ref|XP_002297813.1| f-box family protein [Populus trichocarpa] gi|222845071|gb|EEE82618.1| f-box family protein [Populus trichocarpa]

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 121/233 (51%), Positives = 148/233 (63%), Gaps = 27/233 (11%)

Query: 1   MDITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSV 60
           MD++  LP EC++HIIS T+PRDAC  A VS  F+SAADSD VW+ FLPSD+  IIS+S 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 61  SSSSLS-TSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTAN 119
           +SSS   T+L KK+LYFHLC+ P+ +NN  MSFALEK  GKKCYM+GARGL I WG T +
Sbjct: 61  ASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDTPD 120

Query: 120 FWKWTSL-SKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGST 178
           +W W  L  +SRF EVAEL Y W+ +V  RI+ +I S +T YAAYLVFK   ST GF   
Sbjct: 121 YWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDER 180

Query: 179 LLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYFLDN 231
           L+   V  E                        R DGWMEIEM +   +F DN
Sbjct: 181 LVELSVNFE----------------------ESRSDGWMEIEMGE---FFYDN 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433185|ref|XP_004134378.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 153/238 (64%), Gaps = 8/238 (3%)

Query: 1   MDITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSV 60
           MDI N LP ECIS I++ T+P+DACR A  S  F+SAADSD +W  FLPSDY+ IIS + 
Sbjct: 1   MDI-NQLPAECISSILAFTSPKDACRSAVASPAFRSAADSDAIWTTFLPSDYRQIISQAS 59

Query: 61  SSSSLSTSLP--KKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTA 118
           SSS+ S      KK LY  L  + +FI +   SF LEKE+GKKCYM+GAR L I WGS+ 
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLEIVWGSSP 119

Query: 119 NFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKST---DGF 175
            +W W S+  SRF EVAEL Y W+ E+  +IE R LS +T YAAY VFKF +     DGF
Sbjct: 120 AYWTWQSIPTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKFKEGDFQHDGF 179

Query: 176 GSTLLASGVYVEG--INDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYFLDN 231
           G+  ++  VY EG  + ++  + + LDP   +P +  +R DGWME+EM +  N   D+
Sbjct: 180 GTKPVSLEVYFEGEEVGEDGTKMVLLDPPEGSPVVCKERSDGWMEVEMGEFFNELGDD 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487520|ref|XP_004157667.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/238 (47%), Positives = 149/238 (62%), Gaps = 8/238 (3%)

Query: 1   MDITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSV 60
           MDI N LP EC+S I++ T+P+DACR A  S  F+SAADSD +W  FLPSDY+ IIS + 
Sbjct: 1   MDI-NQLPAECLSSILAFTSPKDACRSAVASPAFRSAADSDALWITFLPSDYRQIISQAS 59

Query: 61  SSSSLSTSLP--KKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTA 118
           SSS+ S      KK LYF L  + +FI +   SF LEKE+GKKCYM+GAR L I WG++ 
Sbjct: 60  SSSTSSFLNSLSKKALYFRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNSP 119

Query: 119 NFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGK---STDGF 175
            +W W S+  SRF EVAEL   W+ E+  +IE R LS +T YAAY VFK  +   S  GF
Sbjct: 120 QYWTWKSIPTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRGF 179

Query: 176 GSTLLASGVYVEGINDEE--RQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYFLDN 231
               ++  V+ EG   EE  R+ + LDP   +  +  +R DGWME+EM +  N   D+
Sbjct: 180 QIRPVSLEVHFEGAEVEEDGRKRVILDPPEGSLVVCEERSDGWMEVEMGEIFNELGDD 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432438|ref|XP_004134006.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 114/238 (47%), Positives = 149/238 (62%), Gaps = 8/238 (3%)

Query: 1   MDITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSV 60
           MDI N LP EC+S I++ T+P+DACR A VS  F+SAADSD +W  FLPSDY+ IIS + 
Sbjct: 1   MDI-NQLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQAS 59

Query: 61  SSSSLSTSLP--KKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTA 118
           SSS+ S      KK LY  L  + +FI +   SF LEKE+GKKCYM+GAR L I WG++ 
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNSP 119

Query: 119 NFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGK---STDGF 175
            +W W S+  SRF EVAEL   W+ E+  +IE R LS +T YAAY VFK  +   S  GF
Sbjct: 120 QYWTWKSIPTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRGF 179

Query: 176 GSTLLASGVYVEGINDEE--RQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYFLDN 231
               ++  V+ EG   EE  R+ + LDP   +  +  +R DGWME+EM +  N   D+
Sbjct: 180 QIRPVSLEVHFEGAEVEEDGRKRVILDPPEGSLVVCEERSDGWMEVEMGEIFNELGDD 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470210|ref|XP_002270048.1| PREDICTED: F-box protein PP2-B1 [Vitis vinifera]

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 100/207 (48%), Positives = 139/207 (67%), Gaps = 2/207 (0%)

Query: 5   NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           ++LP  CI+ +++LT+PRD CR++AV+ +F SAA+SD +WE+FLP+DY+ II+ S  SSS
Sbjct: 21  SSLPEGCIADVLALTSPRDVCRMSAVASVFLSAAESDALWERFLPADYREIIARSSESSS 80

Query: 65  LSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWT 124
                 KK+LYF LC YP+ I+    SF LEK +GKKCYM+ +R L I WG T  +W+WT
Sbjct: 81  WRHFSSKKELYFTLCDYPLLIDEGKKSFWLEKRSGKKCYMLASRELTIIWGDTPGYWEWT 140

Query: 125 SLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGV 184
           SL +SRFPEVA L    +FE+  +I T +LS RTNYAAYLVF  G+S  GF    + S +
Sbjct: 141 SLPESRFPEVAYLQAVCWFEIRGKINTCMLSPRTNYAAYLVFHAGRS-HGFEDVPVESSI 199

Query: 185 YVEGINDEERQGLFLDPSRNTPQLFHD 211
            + G N+   + ++L   R+  Q  HD
Sbjct: 200 EIVG-NETTTRVIYLARYRSEEQAEHD 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088854|emb|CBI38318.3| unnamed protein product [Vitis vinifera]

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 105/229 (45%), Positives = 146/229 (63%), Gaps = 12/229 (5%)

Query: 5   NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           ++LP  CI+ +++LT+PRD CR++AV+ +F SAA+SD +WE+FLP+DY+ II+ S  SSS
Sbjct: 21  SSLPEGCIADVLALTSPRDVCRMSAVASVFLSAAESDALWERFLPADYREIIARSSESSS 80

Query: 65  LSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWT 124
                 KK+LYF LC YP+ I+    SF LEK +GKKCYM+ +R L I WG T  +W+WT
Sbjct: 81  WRHFSSKKELYFTLCDYPLLIDEGKKSFWLEKRSGKKCYMLASRELTIIWGDTPGYWEWT 140

Query: 125 SLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGV 184
           SL +SRFPEVA L    +FE+  +I T +LS RTNYAAYLVF  G+S  GF    + S +
Sbjct: 141 SLPESRFPEVAYLQAVCWFEIRGKINTCMLSPRTNYAAYLVFHAGRS-HGFEDVPVESSI 199

Query: 185 YVEGINDEERQGLFLDPSRN----TPQLFHD------RRDGWMEIEMAD 223
            + G N+   + ++L   R     T  +  D      R D W EIE+ +
Sbjct: 200 EIVG-NETTTRVIYLARYRKNEEPTSSIRSDLPYPKKREDSWFEIELGE 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518583|ref|XP_004166316.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 149/238 (62%), Gaps = 8/238 (3%)

Query: 1   MDITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSV 60
           MDI N LP EC+S I++ T+P+DACR A VS  F+SAADSD +W  FLPSDY+ IIS + 
Sbjct: 1   MDI-NQLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQAS 59

Query: 61  SSSSLSTSLP--KKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTA 118
           SSS+ S      KK LY  L  + +FI +    F LEK +GKKCYM+GAR L I WGS+ 
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSGFVLEKGSGKKCYMIGARDLEIVWGSSP 119

Query: 119 NFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKST---DGF 175
            +W W S+  SRF EVAEL Y W+ E+  +IE R LS +T YAAY VFK  +       F
Sbjct: 120 EYWTWQSIPTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKLVEDNFCRHVF 179

Query: 176 GSTLLASGVYVEG--INDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYFLDN 231
            +T ++  V+ EG  + ++ R+ + LDP   +  +  +R DGWME+EM +  N   D+
Sbjct: 180 ETTPVSLEVHFEGAEVEEDRRKRVILDPLEGSSVVCVERSDGWMEVEMGEFFNECGDD 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088861|emb|CBI38325.3| unnamed protein product [Vitis vinifera]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/241 (42%), Positives = 136/241 (56%), Gaps = 14/241 (5%)

Query: 5   NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
            +LP+EC++ IIS T+P DA R++ VS   + AADSD VWE FLP D++ II+ +  SS 
Sbjct: 45  TSLPLECVTEIISRTSPPDASRMSVVSTDLRFAADSDAVWEGFLPKDFQSIIAGAAGSSR 104

Query: 65  LSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWT 124
                 KK+LY  L   P+ I     SF++EK +GKKCYM+ AR L IEWG T  +WKW 
Sbjct: 105 AEVQ-SKKELYLRLSDEPILIEGGLKSFSIEKRSGKKCYMIAARALTIEWGDTPMYWKWI 163

Query: 125 SLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGF--------- 175
           SL +SRF EVAEL+   +FE+  RI T +L  +TNYAAYLVF     T GF         
Sbjct: 164 SLPQSRFKEVAELISVCWFEIRGRINTCLLCLKTNYAAYLVFNSTTETYGFEYHPVEVSI 223

Query: 176 ---GSTLLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYFLDNI 232
              G  +    VY+     + R+   + P R   Q    R DGW+EIE+ +  N   D  
Sbjct: 224 GIIGGRISTQSVYLNPSKTQTRR-FPVVPRRGNCQHPKKREDGWLEIELGEFFNEGGDEE 282

Query: 233 L 233
           L
Sbjct: 283 L 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470220|ref|XP_002270580.1| PREDICTED: F-box protein PP2-B10-like [Vitis vinifera]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/220 (43%), Positives = 138/220 (62%), Gaps = 4/220 (1%)

Query: 5   NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           +ALP +CI+ I++ T+ RDACR++ VS  F SAA+SD +WE FLP+DY+ II  S  SS+
Sbjct: 21  SALPEDCIAGILARTSIRDACRMSTVSPEFLSAAESDALWETFLPADYREIIGRSSESSA 80

Query: 65  LSTSLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWT 124
                 KK+L+F LC+ P+ I+    SF L+KE+GKKCYM+ AR L I W  T  +W W 
Sbjct: 81  RQDFSSKKELFFRLCNSPLLIDGGKKSFWLDKESGKKCYMIAARELTIIWSETPRYWTWI 140

Query: 125 SLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGV 184
           S  +SRF EVA L   W+F +  ++ T +LS  TNYAAYL+F+     DGF    + S +
Sbjct: 141 SPPQSRFTEVANLKIVWWFVIKGKMNTCMLSPCTNYAAYLIFQRNDIFDGFEDNPIESSI 200

Query: 185 YVEGINDEERQGLFLDPSRN-TPQLFHDRRDGWMEIEMAD 223
            V G  +  ++ ++LDP  + +P     R DGW E+E+ +
Sbjct: 201 GVTG-GETAKKVIYLDPEHDISPN--PTRIDGWYEVELGE 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.927	0.675	0.401	7.5e-41
TAIR|locus:2016349	257	PP2-B11 "phloem protein 2-B11"	0.901	0.817	0.426	2e-40
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.927	0.794	0.404	1.8e-39
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.918	0.690	0.407	2.3e-39
TAIR|locus:2153954	251	PP2-B12 "phloem protein 2-B12"	0.879	0.816	0.410	7e-38
TAIR|locus:2056191	336	PP2-B1 "phloem protein 2-B1" [	0.746	0.517	0.430	1.3e-36
TAIR|locus:2056201	305	PP2-B8 "phloem protein 2-B8" [	0.927	0.708	0.379	1.9e-35
TAIR|locus:2056166	307	PP2-B6 "phloem protein 2-B6" [	0.914	0.693	0.372	5.2e-33
TAIR|locus:505006110	289	PP2-B15 "phloem protein 2-B15"	0.871	0.702	0.352	1.6e-32
TAIR|locus:2056176	307	PP2-B7 "phloem protein 2-B7" [	0.905	0.687	0.378	4.9e-30

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 92/229 (40%), Positives = 132/229 (57%)

Query:     5 NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIIXXXXXXXX 64
             + LP +CIS+IIS T+PRDAC  A+VS  F+SA  SD VW+KFLP +Y+ ++        
Sbjct:    62 DVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFAS 121

Query:    65 XXXXLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWT 124
                   KK+LYF LCH PV I +   SF LEK +GK+C M+ ++ L I WGS+  +W+W 
Sbjct:   122 ------KKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWI 175

Query:   125 SLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGV 184
             S+ +SRF ++AEL+   +FE+  +   R+LS  T Y+AY+VFK      G G   +  G+
Sbjct:   176 SIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGL 235

Query:   185 YVEGINDEERQGLFLDPS-----RNTPQLFH--DRRDGWMEIEMADKCN 226
              + G    +R   F+ P      R T  +     R DGWME E+ +  N
Sbjct:   236 GLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFN 284

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2016349 PP2-B11 "phloem protein 2-B11" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 95/223 (42%), Positives = 125/223 (56%)

Query:     5 NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIIXXXXXXXX 64
             N LP +CI+ I+SLTTP D CRL+AVS IF+SAA SD VW  FLP+D+            
Sbjct:     2 NNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFP-------AGFA 54

Query:    65 XXXXLP-KKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKW 123
                 LP +K L+F L   P+ IN   +SF+LE+++G KCYM+ AR L I WG    +W W
Sbjct:    55 APAGLPTRKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHW 114

Query:   124 TSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFG-----ST 178
              SL  +RF EVAEL+  W+ E+  +I   +LS+ T YAAY VFK+  S  GF      S 
Sbjct:   115 ISLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFRQPVETSL 174

Query:   179 LLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEM 221
             +LA     + +       L  D      Q    RRDGW E+E+
Sbjct:   175 VLADTESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVEL 217

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 91/225 (40%), Positives = 126/225 (56%)

Query:     5 NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIIXXXXXXXX 64
             ++ P +CIS+IIS T PRDAC  A VS  F+S   SD++WEKFLP+DY+ +I        
Sbjct:    15 DSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS 74

Query:    65 XXXXLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWT 124
                   KK+LYF LC+ PV  ++   S  LEK +GK+C M+ A  L I WG    +W+W 
Sbjct:    75 ------KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWI 128

Query:   125 SLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGV 184
              + +SRF +VA+L    +FE+  R  TR+LS RT Y+AY+VFK      GF +  + + V
Sbjct:   129 PIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAV 188

Query:   185 YVEGINDEERQGLFLDPSRNTPQLF---HDRRDGWMEIEMADKCN 226
              V G     R   F +  R   +       R DGWMEIE+ +  N
Sbjct:   189 GVVGQEPSRRLICFSEAIRRGRRNVVKPKQREDGWMEIELGEFFN 233

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 93/228 (40%), Positives = 129/228 (56%)

Query:     7 LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIIXXXXXXXXXX 66
             LP +CIS+IIS T+PRDAC  A+VS  F+SA +SD VW+KFLPSDY  ++          
Sbjct:    50 LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSS-- 107

Query:    67 XXLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGAR-GLCIEWGSTANFWKWTS 125
                 KK+LYF +C  PV + +   SF LEKE GKKC+M+  +  + I W ST  +W+W S
Sbjct:   108 ----KKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWIS 163

Query:   126 LSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVY 185
             + ++RF EV EL+   +FEV   + T+ LS  T Y+AY+VFK        G   + + V 
Sbjct:   164 IPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVG 223

Query:   186 VEGINDEERQGLFLDPS-----RNTPQLFHD--RRDGWMEIEMADKCN 226
             + G    +R   F+ PS     R T  +     R+DGWME E+    N
Sbjct:   224 LVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFN 271

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2153954 PP2-B12 "phloem protein 2-B12" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 90/219 (41%), Positives = 123/219 (56%)

Query:     7 LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIIXXXXXXXXXX 66
             LP ECI+ +IS T+P DACR++AVS + +SAADS+  WE+FLPSDY++ I          
Sbjct:     6 LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSRFS-- 63

Query:    67 XXLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSL 126
                  K L+   C  P+ I +   SF +EK +GKKC+M+ AR L I W  +  FW W S+
Sbjct:    64 ----NKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSI 119

Query:   127 SKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYV 186
               SRF EVA L+   +FE+  +I T +LS  TNY+AYLVFK  +    FG   L   V  
Sbjct:   120 PDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFK-EQEMGSFGFESLPLEVSF 178

Query:   187 EGINDE--ERQGLFLDPSRNTPQLFHDRRDGWMEIEMAD 223
                  E    + +FL     T +    R DGW+EIE+ +
Sbjct:   179 RSTRTEVYNNRRVFL--KSGTQE---SREDGWLEIELGE 212

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056191 PP2-B1 "phloem protein 2-B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 78/181 (43%), Positives = 109/181 (60%)

Query:     5 NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIIXXXXXXXX 64
             +ALP +CIS +IS T+PRDAC +A+VS   KSAA SDLVWE FLPS+Y  ++        
Sbjct:    33 DALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANH-- 90

Query:    65 XXXXLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWT 124
                 L KK+++  L    V + N   SF +EK +GKKCYM+ A  L I WG +  +WKW 
Sbjct:    91 ----LSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWI 146

Query:   125 SLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTD-GFGSTLLASG 183
             ++ +S+F +VAEL    +FEV  +I   +LS  T+Y+ Y+VFK       GF    + +G
Sbjct:   147 TVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAG 206

Query:   184 V 184
             V
Sbjct:   207 V 207

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056201 PP2-B8 "phloem protein 2-B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 88/232 (37%), Positives = 129/232 (55%)

Query:     7 LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIIXXXXXXXXXX 66
             LP EC+S I+S T+P+DAC LA+VS  F SA  SD+VWEKF+P +Y+ +I          
Sbjct:    39 LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKF-- 96

Query:    67 XXLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSL 126
               L KK+LYF LC   V I++   S  +EK   K+C M+ A  L I WG++   W+W   
Sbjct:    97 --LSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPD 154

Query:   127 SKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYV 186
              ++RF  VAEL+    FE+  RI +R++S +T Y+AY+V+K      GF +  +   V V
Sbjct:   155 PQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGV 214

Query:   187 EGINDEE--RQGLFLDPSRNTPQLFHDR----------RDGWMEIEMADKCN 226
              G + EE  R+ +  D + +      DR          +DGWMEI++ +  N
Sbjct:   215 VGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFN 266

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056166 PP2-B6 "phloem protein 2-B6" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 85/228 (37%), Positives = 124/228 (54%)

Query:     7 LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIIXXXXXXXXXX 66
             LP +CIS+IIS T+PRD C  A+VS  F  A   D +WEKFLPS+Y+ +I          
Sbjct:    48 LPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRVFSS-- 105

Query:    67 XXLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSL 126
                 KKDLYF LC+ PV + +   SF LE  +GKKC ++ A+ L I  G+   +W+W  L
Sbjct:   106 ----KKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIEL 161

Query:   127 SKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYV 186
              +S F +V EL+    F++   + T+ILS  T+Y+ Y+V+K      G     +  GV  
Sbjct:   162 CESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGVGF 221

Query:   187 EGINDEERQGLFLDPS----RNTPQ--LFHDRR--DGWMEIEMADKCN 226
             +G  +  +Q +  D S    +  P+  L   ++  DGWME E+ D  N
Sbjct:   222 KG-QEMPKQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFN 268

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:505006110 PP2-B15 "phloem protein 2-B15" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 75/213 (35%), Positives = 115/213 (53%)

Query:     7 LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIIXXXXXXXXXX 66
             LP  C++ I+S TTP D    AAVS +F+ A DSD VWEKFLP+DY  +I          
Sbjct:     3 LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRIF 62

Query:    67 XXLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSL 126
                 KK+LY  LC   + I+N    F +EK +GK  Y++ +R L I W    ++W W+  
Sbjct:    63 SS--KKELYRCLCE-SILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPR 119

Query:   127 SKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYV 186
             S SRF E  +L+   + E+  +I+T  LS  TNY AYL+ K   ++  +G  L+ +   +
Sbjct:   120 SDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKV--TSRAYGLDLVPAETSI 177

Query:   187 EGINDEER-QGLFLDPSRNTPQ----LFHDRRD 214
             +  N E++ +  +L    N  Q    +F+ +R+
Sbjct:   178 KVGNGEKKIKSTYLSCLDNKKQQMERVFYGQRE 210

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056176 PP2-B7 "phloem protein 2-B7" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 87/230 (37%), Positives = 121/230 (52%)

Query:     7 LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIIXXXXXXXXXX 66
             LP ECIS IIS T+PRDAC  A VS  F+SA  SD+VWEKF+P +Y+ ++          
Sbjct:    43 LPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEYESLLSRSQHFSS-- 100

Query:    67 XXLPKKDLYFHLCHYPVFINNCTMSFALEKETGKKCYMVGARGLCIEWGSTANFWKWTSL 126
                 KK+L+F LC   V IN       +EK TGK+C M+ A  L +   ST + WKW + 
Sbjct:   101 ----KKELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASALNL---STHHTWKWITN 153

Query:   127 SKSRFPE-VAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVY 185
               S + E V EL+   +FE+  R  TR LS RT Y+ Y+VF       GF    + + V 
Sbjct:   154 PVSAWLETVPELLTTRWFEIRCRTNTRFLSPRTRYSVYIVFLKADICYGFAYVAMEAVVR 213

Query:   186 VEG--INDEERQGLFLDPSRNTPQLFH------DRR-DGWMEIEMADKCN 226
             + G  +++  R+ +    +     L        +RR DGWMEIE+ +  N
Sbjct:   214 MVGHELSESCRRYVCFHEAMEWQFLTRKNLVNPERREDGWMEIEIGEFFN 263

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q949S5	P2B11_ARATH	No assigned EC number	0.4241	0.9141	0.8287	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
pfam14299	154	pfam14299, PP2, Phloem protein 2	3e-37
pfam12937	47	pfam12937, F-box-like, F-box-like	2e-05
pfam00646	48	pfam00646, F-box, F-box domain	5e-04
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	8e-04

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  127 bits (321), Expect = 3e-37
 Identities = 49/125 (39%), Positives = 66/125 (52%), Gaps = 8/125 (6%)

Query: 99  GKKCYMVGARGLCIEWGSTANFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRT 158
           GKKCYM+ AR L I WG    +W+W  L +SRF EVAEL+   + E+  +I TR+LS  T
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 159 NYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWME 218
            Y+AYLVFK      G+    +   V V       ++     P +        R DGWME
Sbjct: 61  TYSAYLVFKLADRAYGWDEKPVEFSVSVPDGQKSRQERYVCLPEK--------RGDGWME 112

Query: 219 IEMAD 223
           IE+ +
Sbjct: 113 IEVGE 117

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 5  NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKF 47
          + LP E +  I S   PRD  RLA V   ++  A  D +W + 
Sbjct: 2  SDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRL 44

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 7  LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFL 48
          LP + +  I+S   P+D  RL+ VS  ++S  DS  +W+K L
Sbjct: 6  LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 7  LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKF 47
          LP E +  I+S   P+D  RL  VS  ++S  DS   W K 
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.82
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.54
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.46
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.81
PF06881	109	Elongin_A: RNA polymerase II transcription factor	93.63
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	89.77
KOG3926	332	consensus F-box proteins [Amino acid transport and	87.91
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	86.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	83.36
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	83.0

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=1.7e-51  Score=341.04  Aligned_cols=124  Identities=42%  Similarity=0.751  Sum_probs=116.5

Q ss_pred             CCeeEEeeccceeeeeCCCCCceeEEecCCCCcccceEEeeeeEEEEEEEEeccccCCCcceEEEEEEEeCCCcCCCCcc
Q 042480           99 GKKCYMVGARGLCIEWGSTANFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGST  178 (233)
Q Consensus        99 G~kcymlsAR~L~I~Wg~~~~yW~W~~~~~srf~evAeL~~V~WleI~G~i~~~~LSp~t~Y~ay~v~kl~~~~~G~~~~  178 (233)
                      |+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||||+|+||||||+++++|||+..
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~   80 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP   80 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ceEEEEEEeCCeee-eeEEEEccCCCCCCCCccccCCcEEEEeeeEEEeCCCCC
Q 042480          179 LLASGVYVEGINDE-ERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYFLDN  231 (233)
Q Consensus       179 pv~~~v~~~g~~~~-~~~~v~l~~~~~~~~~p~~r~DgW~EielGEF~~~~g~~  231 (233)
                      ||+++|+++++... +++.+++         |++|+|||||||+|||+|++++|
T Consensus        81 pv~~~v~~~~~~~~~~~~~~~~---------~~~r~dgW~Eie~GeF~~~~~~~  125 (154)
T PF14299_consen   81 PVEFSVKVPDGEKYEQERKVCL---------PKERGDGWMEIELGEFFNEGGDD  125 (154)
T ss_pred             CEEEEEEeCCCccccceeeEEc---------CCCCCCCEEEEEcceEEecCCCC
Confidence            99999999887653 4566776         48999999999999999998765

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.82  E-value=4.1e-09  Score=70.16  Aligned_cols=45  Identities=29%  Similarity=0.551  Sum_probs=40.3

Q ss_pred             cccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccC
Q 042480            4 TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFL   48 (233)
Q Consensus         4 ~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fL   48 (233)
                      +++||+|.+.+|+++++|.|.+++++|||.|+.++.++.+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            468999999999999999999999999999999999999999864

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.54  E-value=4.6e-08  Score=64.79  Aligned_cols=44  Identities=36%  Similarity=0.600  Sum_probs=39.0

Q ss_pred             cccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhcc
Q 042480            4 TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKF   47 (233)
Q Consensus         4 ~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~f   47 (233)
                      +.+||++++.+|++++++.|.++++.||+.|+.+++++..|.++
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            56899999999999999999999999999999999999999875

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.46  E-value=2.2e-07  Score=58.94  Aligned_cols=40  Identities=40%  Similarity=0.563  Sum_probs=38.7

Q ss_pred             CcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhc
Q 042480            7 LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEK   46 (233)
Q Consensus         7 LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~   46 (233)
                      ||++++..|+++++|.|.+++++||+.|+.+++++.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.81  E-value=0.016  Score=53.88  Aligned_cols=74  Identities=14%  Similarity=0.148  Sum_probs=54.1

Q ss_pred             cccCcHHHHHHHHhcCCh-----HHHHHHhhccHHHHhhhcChhhhhccCCCcchhhhcccCCCCC-CCCCCCHHHHHHh
Q 042480            4 TNALPVECISHIISLTTP-----RDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS-LSTSLPKKDLYFH   77 (233)
Q Consensus         4 ~~~LPe~cia~ils~tsP-----~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~i~~~~~~~~~-~~~~~SkKely~~   77 (233)
                      +..||+|.+-.|+...=|     ++.-++|+||+.|+-+|..|.+|+.++=.-|..-+-...+-.. -.-..|-+++|..
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~  186 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE  186 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence            478999999998876554     9999999999999999999999999988766643332221100 0113467788765

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=93.63  E-value=0.074  Score=41.53  Aligned_cols=72  Identities=17%  Similarity=0.298  Sum_probs=57.7

Q ss_pred             ccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCcchhhhcccCCCCCCCCCCCHHHHHHhhcc
Q 042480            3 ITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLSTSLPKKDLYFHLCH   80 (233)
Q Consensus         3 ~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~i~~~~~~~~~~~~~~SkKely~~L~~   80 (233)
                      -++++|.++|.-||...+|....++-.-|+.+  +-++|.+|.+|+-.||+.-..... +   ....|-+++|.++.+
T Consensus         3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~-~---~~~~~Wr~~Y~~~~~   74 (109)
T PF06881_consen    3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK-P---KEPESWRELYEKLKK   74 (109)
T ss_pred             ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc-c---cccchHHHHHHHHHH
Confidence            46789999999999999999999999999765  456999999999999986222222 2   124689999999864

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=89.77  E-value=0.32  Score=46.11  Aligned_cols=39  Identities=15%  Similarity=0.209  Sum_probs=35.4

Q ss_pred             cccccCcHHHHHHHHhcC-ChHHHHHHhhccHHHHhhhcC
Q 042480            2 DITNALPVECISHIISLT-TPRDACRLAAVSHIFKSAADS   40 (233)
Q Consensus         2 ~~~~~LPe~cia~ils~t-sP~dacr~a~Vs~~fr~aa~s   40 (233)
                      .--.+||+|.+..|..++ +..|..|+++||+++|+|+..
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            344689999999999998 789999999999999999986

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=87.91  E-value=0.39  Score=43.98  Aligned_cols=74  Identities=23%  Similarity=0.378  Sum_probs=54.0

Q ss_pred             cccCcHHHHHHHHhcCC-hHHHHHHhhccHHHHhhhcChhhhhccCCCcchh--hhcccCCCCCCCCCCCHHHHHHhhc
Q 042480            4 TNALPVECISHIISLTT-PRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKL--IISNSVSSSSLSTSLPKKDLYFHLC   79 (233)
Q Consensus         4 ~~~LPe~cia~ils~ts-P~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~--i~~~~~~~~~~~~~~SkKely~~L~   79 (233)
                      |-|||++|+..||-+++ -+|.--+|.|-.++....+.+-+|.+.+-=.|.+  |-...... . .-..--|++|+.|-
T Consensus       202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~-k-~~q~dWkqmyf~L~  278 (332)
T KOG3926|consen  202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILS-K-KGQKDWKQMYFQLR  278 (332)
T ss_pred             cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhc-c-ccchhHHHHHHHHH
Confidence            57999999999999876 7999999999999999999999999887655441  22111100 0 00123678888885

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=86.60  E-value=0.43  Score=47.21  Aligned_cols=50  Identities=26%  Similarity=0.329  Sum_probs=44.6

Q ss_pred             cccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCcch
Q 042480            4 TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYK   53 (233)
Q Consensus         4 ~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~   53 (233)
                      +..||-+..-.|++++++++.+++++||+.|+..++.+.+|.+.+.....
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~  157 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG  157 (537)
T ss_pred             hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence            46799999999999999999999999999999999999999876665443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=83.36  E-value=1.1  Score=41.99  Aligned_cols=43  Identities=21%  Similarity=0.384  Sum_probs=40.8

Q ss_pred             cccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhc
Q 042480            4 TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEK   46 (233)
Q Consensus         4 ~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~   46 (233)
                      ++.||+|.+-.|.+.+--.|.-+++.||+.|...|...++|..
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~  140 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT  140 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence            4799999999999999999999999999999999999999943

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=83.00  E-value=0.31  Score=45.69  Aligned_cols=48  Identities=21%  Similarity=0.209  Sum_probs=44.5

Q ss_pred             cccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCc
Q 042480            4 TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSD   51 (233)
Q Consensus         4 ~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~d   51 (233)
                      ++.+|.+.+..|++++.++++.+.|+||+.++..++-+..|++++-.+
T Consensus         8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~   55 (386)
T KOG4408|consen    8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKY   55 (386)
T ss_pred             hhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccc
Confidence            578899999999999999999999999999999999999999998444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	3e-07

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 5  NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYK 53
            LP++   +I+S  +P D C+L + +H +       ++W  FL  D  
Sbjct: 6  TRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.87
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.82
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.08
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.07
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.81
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.26
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	90.52
1dyo_A	160	Endo-1,4-beta-xylanase Y; carbohydrate-binding mod	82.07

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.87  E-value=1.9e-09  Score=72.33  Aligned_cols=45  Identities=18%  Similarity=0.302  Sum_probs=40.1

Q ss_pred             ccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhcc
Q 042480            3 ITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKF   47 (233)
Q Consensus         3 ~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~f   47 (233)
                      .+++||+|++.+|+++++|+|.+++++|||.|+.++.++.+|+++
T Consensus         8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            468999999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.82  E-value=3.1e-09  Score=96.01  Aligned_cols=78  Identities=21%  Similarity=0.419  Sum_probs=62.6

Q ss_pred             cccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCcch---hhhcccCCCC----------CCCCC
Q 042480            2 DITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYK---LIISNSVSSS----------SLSTS   68 (233)
Q Consensus         2 ~~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~---~i~~~~~~~~----------~~~~~   68 (233)
                      |++++||.+++.+|+||++|+|+||+|+||+.||.+|+++.+|+.||-.|++   +|-..+.+..          ....+
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~   82 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAF   82 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----C
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccc
Confidence            6789999999999999999999999999999999999999999999987644   4444332211          00124


Q ss_pred             CCHHHHHHhhc
Q 042480           69 LPKKDLYFHLC   79 (233)
Q Consensus        69 ~SkKely~~L~   79 (233)
                      ..++.+|.+=|
T Consensus        83 ~~~~~~y~~~~   93 (312)
T 3l2o_B           83 FDYMAVYRMCC   93 (312)
T ss_dssp             CCHHHHHHHHC
T ss_pred             ccHHHHHHhcC
Confidence            56899999988

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.08  E-value=2.2e-06  Score=77.11  Aligned_cols=81  Identities=11%  Similarity=0.162  Sum_probs=60.3

Q ss_pred             cccccCcHHHHHHHHhcCChHHHH-HHhhccHHHHhhhcChhhhhccCCCcchhhhcccCCCCCCCCCCCHHHHHHhhcc
Q 042480            2 DITNALPVECISHIISLTTPRDAC-RLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLSTSLPKKDLYFHLCH   80 (233)
Q Consensus         2 ~~~~~LPe~cia~ils~tsP~dac-r~a~Vs~~fr~aa~sD~vW~~fLP~dy~~i~~~~~~~~~~~~~~SkKely~~L~~   80 (233)
                      ..++.||+|.+..||+++.|++.+ |+++|||.||..++++.+|++.+.+.  .+......+   .+..+-|.+|..--.
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~~---~~~~~Wk~~y~~~~~  123 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSAD---EERDHWQQFYFLSKR  123 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC--------CCSCHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--CcccccccC---CCCCChhhhheheec
Confidence            456899999999999999999999 99999999999999999999988765  121111101   023578999987433


Q ss_pred             CCeEecC
Q 042480           81 YPVFINN   87 (233)
Q Consensus        81 ~~vlld~   87 (233)
                      .-+||.+
T Consensus       124 gRNLL~N  130 (297)
T 2e31_A          124 RRNLLRN  130 (297)
T ss_dssp             CCCCSSC
T ss_pred             ccceeec
Confidence            3455544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.07  E-value=2e-06  Score=77.12  Aligned_cols=48  Identities=23%  Similarity=0.435  Sum_probs=45.1

Q ss_pred             cccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCC
Q 042480            2 DITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLP   49 (233)
Q Consensus         2 ~~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP   49 (233)
                      ..++.||++++.+|++|++|+|.|++++||+.|+.+++++.+|++++-
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            457899999999999999999999999999999999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.81  E-value=7.9e-06  Score=73.06  Aligned_cols=46  Identities=22%  Similarity=0.343  Sum_probs=43.0

Q ss_pred             ccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcC-hhhhhccC
Q 042480            3 ITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADS-DLVWEKFL   48 (233)
Q Consensus         3 ~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~s-D~vW~~fL   48 (233)
                      .+..||+|++.+|++|++|+|.|++++||+.|+.++++ +.+|++++
T Consensus        14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35789999999999999999999999999999999988 99999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.77  E-value=6.8e-06  Score=73.67  Aligned_cols=49  Identities=18%  Similarity=0.424  Sum_probs=45.2

Q ss_pred             ccccCcHH----HHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCc
Q 042480            3 ITNALPVE----CISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSD   51 (233)
Q Consensus         3 ~~~~LPe~----cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~d   51 (233)
                      .+..||++    ++.+|++|++|+|.|++++||+.|+..++++.+|++++.+.
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            45789999    99999999999999999999999999999999999887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.11  E-value=0.00027  Score=61.16  Aligned_cols=45  Identities=18%  Similarity=0.302  Sum_probs=41.0

Q ss_pred             ccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhcc
Q 042480            3 ITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKF   47 (233)
Q Consensus         3 ~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~f   47 (233)
                      .+++||+|++.+|+++++++|.++++.||+.|+.++.+...|.+.
T Consensus         8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            468999999999999999999999999999999999877778653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.65  E-value=0.0067  Score=56.27  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=29.5

Q ss_pred             cccccCcHHHHHHHHhcCC-hHHHHHHhhccHHHHhh
Q 042480            2 DITNALPVECISHIISLTT-PRDACRLAAVSHIFKSA   37 (233)
Q Consensus         2 ~~~~~LPe~cia~ils~ts-P~dacr~a~Vs~~fr~a   37 (233)
                      ..+++||+|++.+|++|++ ++|++++|.||+.|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4578999999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.26  E-value=0.024  Score=52.64  Aligned_cols=33  Identities=15%  Similarity=0.202  Sum_probs=31.3

Q ss_pred             ccCcHHHHHHHHhcC-ChHHHHHHhhccHHHHhh
Q 042480            5 NALPVECISHIISLT-TPRDACRLAAVSHIFKSA   37 (233)
Q Consensus         5 ~~LPe~cia~ils~t-sP~dacr~a~Vs~~fr~a   37 (233)
                      .+||++++.+|++|+ +++|+++++.||+.|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            379999999999999 899999999999999988

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=90.52  E-value=0.1  Score=39.41  Aligned_cols=65  Identities=17%  Similarity=0.407  Sum_probs=40.1

Q ss_pred             cCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCcchhhhcccCCCCCCCCCCCHHHHHHhhcc
Q 042480            6 ALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLSTSLPKKDLYFHLCH   80 (233)
Q Consensus         6 ~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~i~~~~~~~~~~~~~~SkKely~~L~~   80 (233)
                      ..|-+.+.-||...||....++-.-|+.+  .-++|-+|.+++-+||..--     +   ....|-+++|.+|.+
T Consensus        12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p---~e~esWRelY~rl~~   76 (97)
T 4hfx_A           12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----P---EEYESWREMYLRLQD   76 (97)
T ss_dssp             --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----C---CSSSCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----C---CCCCCHHHHHHHHHH
Confidence            46888999999999999999999999966  57899999999999998432     1   124699999999975

>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A

Probab=82.07  E-value=6.7  Score=30.97  Aligned_cols=69  Identities=12%  Similarity=0.077  Sum_probs=41.1

Q ss_pred             EeccccCCCcceEEEEEEEeCCCcCCCCccceEEEEEEeCCeeeeeEEEEccCCCCCCCCccccCCcEEEEeeeEEEeCC
Q 042480          149 IETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYF  228 (233)
Q Consensus       149 i~~~~LSp~t~Y~ay~v~kl~~~~~G~~~~pv~~~v~~~g~~~~~~~~v~l~~~~~~~~~p~~r~DgW~EielGEF~~~~  228 (233)
                      +....|.||++|.+..-+|+.++.   ....+.+++...+... ..+...+.       .-....++|.+|+-|.|....
T Consensus        60 ~t~~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g-~~~y~~i~-------~~~~~~~~W~~L~G~~ft~~~  128 (160)
T 1dyo_A           60 LNPRTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSG-TQRYDTID-------MKTVGPNQWVHLYNPQYRIPS  128 (160)
T ss_dssp             ECTTTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTS-CEEEEEEE-------EEEECSSCCEEEEEEEEECCT
T ss_pred             cchhhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCC-CEEEEEEe-------eEEEcCCccEEEECcEEEeCC
Confidence            333468999999999999998743   2234444444423221 11222221       002346899999988888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	4e-05
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	4e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	8e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 1e-05
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 5  NALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVW 44
          ++LP E +  I S     +  +++ V   +   A  + +W
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (91), Expect = 4e-05
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 1  MDITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSD-LVWEKFLPSDYKLIISNS 59
           D+  +LP E    I +     D      VS  +         +W+K L S+   +    
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE-NFVSPKG 61

Query: 60 VSSSSLSTSLPKKDLYFHLCHYPVFINNC 88
           +S +L  S     L         F+ N 
Sbjct: 62 FNSLNLKLSQKYPKLSQQDRLRLSFLENI 90

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 4e-05
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 1  MDITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSV 60
           D  + LP E   +++S   P+D  + A     ++  A+ +L+W +    +      +  
Sbjct: 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIK 75

Query: 61 SSSSLSTSLPK---KDLY 75
              +         K  Y
Sbjct: 76 RRKVIKPGFIHSPWKSAY 93

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 8e-04
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 1  MDITNALPV----ECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKF 47
           D   ALP         +I+S    +  C    V   +       ++W+K 
Sbjct: 8  RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.03
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.99
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.47
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.3
d1h6ya_	157	Xylan-binding domain {Clostridium thermocellum [Ta	85.56

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=9.1e-11  Score=74.28  Aligned_cols=41  Identities=20%  Similarity=0.314  Sum_probs=39.8

Q ss_pred             cccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhh
Q 042480            4 TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVW   44 (233)
Q Consensus         4 ~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW   44 (233)
                      ++.||+|++.+|+++++|+|.+|+++|||.|+.+++++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            57899999999999999999999999999999999999998

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.2e-10  Score=84.35  Aligned_cols=77  Identities=18%  Similarity=0.215  Sum_probs=55.9

Q ss_pred             cccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCcchhhhcc---cCCCCCCCCCCCHHHHHHhh
Q 042480            2 DITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISN---SVSSSSLSTSLPKKDLYFHL   78 (233)
Q Consensus         2 ~~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~i~~~---~~~~~~~~~~~SkKely~~L   78 (233)
                      +-|+.||+|++.+|+++++|+|+|++|+||+.|+.++.+|.+|++.+-.++...-..   ...........+-|++|.+.
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~~~   96 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ   96 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHHHHH
Confidence            346889999999999999999999999999999999999999988775543211110   00000111234578999875

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=2.4e-08  Score=73.46  Aligned_cols=45  Identities=20%  Similarity=0.321  Sum_probs=40.7

Q ss_pred             ccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcC-hhhhhcc
Q 042480            3 ITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADS-DLVWEKF   47 (233)
Q Consensus         3 ~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~s-D~vW~~f   47 (233)
                      -+..||+|.+.+|+++++|.|.+++|+||+.|+..+++ ..+|++.
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            46789999999999999999999999999999988765 5899875

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=8.6e-08  Score=72.18  Aligned_cols=49  Identities=18%  Similarity=0.410  Sum_probs=43.7

Q ss_pred             cccCcH----HHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCcc
Q 042480            4 TNALPV----ECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDY   52 (233)
Q Consensus         4 ~~~LPe----~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy   52 (233)
                      +..||.    |.+..|+||++|+|.|++|+||+.|+..++++.+|.+++-+.+
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~   63 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV   63 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhc
Confidence            456775    9999999999999999999999999999999999998875543

>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM22
domain: Xylan-binding domain
species: Clostridium thermocellum [TaxId: 1515]

Probab=85.56  E-value=2.3  Score=30.28  Aligned_cols=74  Identities=9%  Similarity=0.042  Sum_probs=43.8

Q ss_pred             EEEEeccccCCCcceEEEEEEEeCCCcCCCCccceEEEEEEeCCeeeeeEEEEccCCCCCCCCccccCCcEEEEeeeEEE
Q 042480          146 NARIETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKC  225 (233)
Q Consensus       146 ~G~i~~~~LSp~t~Y~ay~v~kl~~~~~G~~~~pv~~~v~~~g~~~~~~~~v~l~~~~~~~~~p~~r~DgW~EielGEF~  225 (233)
                      .-.+....|.||++|.+.+-+|+.+...+   ..+.+.+...++.. ......+.       ......++|.++..++|.
T Consensus        54 ~~~~~~~~l~~g~tY~~s~~vk~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~W~~~~~~~~~  122 (157)
T d1h6ya_          54 QRALNPRTFVPGNTYCFSVVASFIEGASS---TTFCMKLQYVDGSG-TQRYDTID-------MKTVGPNQWVHLYNPQYR  122 (157)
T ss_dssp             EEECCTTTSCTTCEEEEEEEEECCSSSSC---EEEEEEEEEECTTS-CEEEEEEE-------EEEECTTCCEEEEEEEEE
T ss_pred             eEEecceeccCCCEEEEEEEEEeCCCCcc---eeEEEEEEEecCCC-ceeEEEee-------EEEeccCccEEEEEEEEE
Confidence            34445556899999999999998874322   23344444433322 11211111       012335889999889998


Q ss_pred             eCCCC
Q 042480          226 NYFLD  230 (233)
Q Consensus       226 ~~~g~  230 (233)
                      ...+.
T Consensus       123 ~~~~~  127 (157)
T d1h6ya_         123 IPSDA  127 (157)
T ss_dssp             CCTTC
T ss_pred             CCCCC
Confidence            77653