Citrus Sinensis ID: 042484
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 620 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.975 | 0.799 | 0.396 | 1e-121 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.974 | 0.779 | 0.365 | 1e-104 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.948 | 0.804 | 0.355 | 1e-102 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.935 | 0.774 | 0.352 | 1e-94 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.562 | 0.433 | 0.232 | 1e-09 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 272/686 (39%), Positives = 369/686 (53%), Gaps = 81/686 (11%)
Query: 7 IFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIPP 66
+ Y+Y I+GF+ +L A + P V+SV +LHTT + FLGL+++
Sbjct: 65 LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEH----T 120
Query: 67 NSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKD-ARFHCNR-- 123
++ +A D+++G LDTGVW ESKS+ DEGFGPIPS WKG C+ + CNR
Sbjct: 121 ADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKL 180
Query: 124 ----YFNQDYAVHKGPLNSS--FYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKG 177
+F + Y GP++ S S RD +GHG+HT S A G+ V GAS+ G+ GTA+G
Sbjct: 181 IGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARG 240
Query: 178 GSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIGS 226
+P+ARVA YK CW +GGC+ DI+AA D AI D V++LS+SL VAIG+
Sbjct: 241 MAPRARVAVYKVCW--LGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGA 298
Query: 227 FHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISE 286
F A++ GI+V CS GN G +L N AP VGA T+DRD +LGN K F +S
Sbjct: 299 FAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSL 358
Query: 287 -RAKGLPSDKLFTFIR----------------TLDPKKVKGKILVC---LNVRSVDEGLQ 326
+ + LP DKL FI TL P+KVKGKI++C +N R V +G
Sbjct: 359 FKGEALP-DKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINAR-VQKGDV 416
Query: 327 AALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDG-YYNLFFTFTRHPVGYIKRPTT 385
AG ++L N G + D H+LPA+ + G + T +P I T
Sbjct: 417 VKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGT 476
Query: 386 EFGAKPAPYMAALSSKGPIHITPEILK---------------------------RRIPFN 418
G KP+P +AA SS+GP ITP ILK RR+ FN
Sbjct: 477 VVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFN 536
Query: 419 SISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILD-ASFTEATP 477
ISGTSMS P++SG+A L K +HP+WSPAA++SA+MTTA + +LD A+ +TP
Sbjct: 537 IISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTP 596
Query: 478 FSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTC-PKNAIIL 536
F +GAGHV P A +PGL+Y LT DYL FLCAL Y I S YTC P + +
Sbjct: 597 FDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRR-NYTCDPSKSYSV 655
Query: 537 VNFNYPSITVP-KLSGSITVTRRVKNVGSPGTYQARVKTP-QGVSVTMAPKSLKFINVGE 594
+ NYPS V G+ TR V +VG GTY +V + GV +++ P L F E
Sbjct: 656 ADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANE 715
Query: 595 EKSFKVNIKAKNASVTKDYVFGELIW 620
+KS+ V ++ + FG + W
Sbjct: 716 KKSYTVTFTVDSSKPSGSNSFGSIEW 741
|
Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 254/694 (36%), Positives = 363/694 (52%), Gaps = 90/694 (12%)
Query: 7 IFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIPP 66
+ YSY I GFAA+L ++ A + P+VV+V ++ TT+S++FLGL+ G
Sbjct: 71 LLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGN--- 127
Query: 67 NSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKD-ARFHCN--- 122
+ +W K+R+G+ IIG LDTGVW ES SF D G IP KWKGICQ + + CN
Sbjct: 128 SGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSSCNRKL 187
Query: 123 ---RYFNQDYAVHKGPLNS-----SFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGT 174
R+F + + V P S + SARD GHG+HT S GG+ V+ A+V G G G
Sbjct: 188 IGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGNGAGV 247
Query: 175 AKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL-----------VA 223
A+G +P A +A YK CW GCY DI+AA D+AI D VD+LS+SL +A
Sbjct: 248 ARGMAPGAHIAVYKVCW--FNGCYSSDILAAIDVAIQDKVDVLSLSLGGFPIPLYDDTIA 305
Query: 224 IGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRF-- 281
IG+F A++ GI V+C+ GN G ++ ++ N AP +GA T+DR V L N K
Sbjct: 306 IGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANGKLLYG 365
Query: 282 ------KLISERAK--------GLPSDKLFTFIRTLDPKKVKGKILVC---LNVRSVDEG 324
K I + G F +L ++++GK+++C +N RS ++G
Sbjct: 366 ESLYPGKGIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEIRGKMVICDRGVNGRS-EKG 424
Query: 325 LQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDG-YYNLFFTFTRHPVGYIKRP 383
AG ++L N + + D H+LPA++I + + + T P I
Sbjct: 425 EAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLKAYVNATVKPKARIIFG 484
Query: 384 TTEFGAKPAPYMAALSSKGPIHITPEILK---------------------------RRIP 416
T G AP +A S++GP P ILK RR+
Sbjct: 485 GTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQNLGPTGLPYDSRRVN 544
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
F +SGTSMS P++SGI L + +P+WSPAA++SA+MTTA D + + I D + A
Sbjct: 545 FTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAIKDGN-KPAG 603
Query: 477 PFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNAIIL 536
F+ GAGHV P A++PGLVY + DY+ +LC LG+ ++ I L T+ +C N I+
Sbjct: 604 VFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDI-LAITHKNVSC--NGILR 660
Query: 537 VN----FNYPSITVPKLSGSIT--VTRRVKNVGSPGT-YQARVKTPQGVSVTMAPKSLKF 589
N NYPSI V G T +TRRV NVGSP + Y VK P+G+ V + PK L F
Sbjct: 661 KNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNPKRLVF 720
Query: 590 INVGEEKSFKV--NIKAKN-ASVTKDYVFGELIW 620
+V + S++V +K KN + G+L W
Sbjct: 721 KHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTW 754
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 240/676 (35%), Positives = 355/676 (52%), Gaps = 88/676 (13%)
Query: 5 HAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRI 64
++ ++Y R NGFA KL + A ++A VVSVFL++ +LHTT SW+FLG
Sbjct: 67 ESVLHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGF------ 120
Query: 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRY 124
P ++ +++ +I++G LDTG+W ES SF DEGF P P KWKG C+ + F CNR
Sbjct: 121 -PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNN--FRCNRK 177
Query: 125 FNQDYAVHKG-PLN-SSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKA 182
+ H G P++ RD NGHG+HT S A G V+ A+++G G GTA+GG P A
Sbjct: 178 IIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLA 237
Query: 183 RVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL------------VAIGSFHAV 230
R+A YK CW+ GC D DI+AA+D AI DGVD++S+S+ +AIGSFHAV
Sbjct: 238 RIAAYKVCWN--DGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAV 295
Query: 231 QHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLIS----- 285
+ GI+ S GN G T + +P + V ASTMDR V +GN + F+ +S
Sbjct: 296 ERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD 355
Query: 286 ------ERAKGLP------SDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAA 333
+ +P S F ++++P +KGKI+VC E + +L GAA
Sbjct: 356 NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFK-SLDGAA 414
Query: 334 DIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFT-RHPVGYIKRPTTEFGAKPA 392
+++ + D + LP+SV+ ND L + ++ R P I + TT A A
Sbjct: 415 GVLMTS----NTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-A 469
Query: 393 PYMAALSSKGPIHITPEILK------------------------RRIPFNSISGTSMSGP 428
P + + SS+GP T +++K R FN ISGTSMS P
Sbjct: 470 PVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCP 529
Query: 429 YISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPN 488
+I+GIA K +P WSPAA++SA+MTTA+ ++A F F+YG+GHV P
Sbjct: 530 HITGIATYVKTYNPTWSPAAIKSALMTTASP--------MNARFNPQAEFAYGSGHVNPL 581
Query: 489 LAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNAIILVNFNYPSITV-- 546
A+ PGLVY +DY+ FLC GYN + + + + N + + NYPS +
Sbjct: 582 KAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSV 641
Query: 547 -PKLSGSITVTRRVKNVG-SPGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKA 604
P + + R + +V TY+A + PQG+++++ P L F +G+ KSF + ++
Sbjct: 642 SPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVR- 700
Query: 605 KNASVTKDYVFGELIW 620
S+ V L+W
Sbjct: 701 --GSIKGFVVSASLVW 714
|
Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 242/687 (35%), Positives = 348/687 (50%), Gaps = 107/687 (15%)
Query: 9 YSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIPPNS 68
YSYT+ N FAAKL+ A +M + +VVSV ++ +KLHTT SW+F+GL P +
Sbjct: 76 YSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGL-------PLT 128
Query: 69 IWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCN------ 122
+ D+IIG LDTG+ +S+SF D G GP P+KWKG C K+ CN
Sbjct: 129 AKRHLKAERDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGPYKNFT-GCNNKIIGA 187
Query: 123 RYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKA 182
+YF D V G + S D +GHG+HT S G VA AS++G GTA+G P A
Sbjct: 188 KYFKHDGNVPAGEVRSPI----DIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSA 243
Query: 183 RVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDM-----------LSVSLVAIGSFHAVQ 231
R+A YK CW GC D DI+A F+ AIHDGV++ S +++GSFHA++
Sbjct: 244 RLAMYKVCW-ARSGCADMDILAGFEAAIHDGVEIISISIGGPIADYSSDSISVGSFHAMR 302
Query: 232 HGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRF-----KLISE 286
GI+ V S GN+G T+ N P + V AS +DR + + LGN K F + S
Sbjct: 303 KGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSP 362
Query: 287 RAKGLP-----------SDKL---FTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGA 332
+AK P DK + F +LD KKVKGK++VC E + GA
Sbjct: 363 KAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGGGGVESTIKSYGGA 422
Query: 333 ADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTF---TRHPVGYIKRPTTEFGA 389
I++ + + + + A + N ++ + + TR I++ T
Sbjct: 423 GAIIV------SDQYLDNAQIFMAPATSVNSSVGDIIYRYINSTRSASAVIQK--TRQVT 474
Query: 390 KPAPYMAALSSKGP-----IHITPEI------------LKRRI----------PFNSISG 422
PAP++A+ SS+GP + P+I LKR + F +SG
Sbjct: 475 IPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSG 534
Query: 423 TSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGA 482
TSM+ P+++G+A K HPDW+PAA++SAI+T+A + + DA F+YG
Sbjct: 535 TSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRRVNK--DAE------FAYGG 586
Query: 483 GHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLF----STNCTYTCPKNAIILVN 538
G + P A PGLVY + Y+ FLC GYN ++ S +C+ P + +
Sbjct: 587 GQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVP--GLGHDS 644
Query: 539 FNYPSITV----PKLSGSITVTRRVKNVGSPGT-YQARVKTPQGVSVTMAPKSLKFINVG 593
NYP+I + K S RRV NVG P + Y A V+ P+GV +T+ P+SL F
Sbjct: 645 LNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKAS 704
Query: 594 EEKSFKVNIKAKNASVTKDYVFGELIW 620
+++SFKV +KAK + K V G L+W
Sbjct: 705 QKRSFKVVVKAKQMTPGK-IVSGLLVW 730
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 108/465 (23%), Positives = 176/465 (37%), Gaps = 116/465 (24%)
Query: 64 IPPNSIWEKARYGEDIIIGNLDTGVWRE----SKSFGDEGFGPIPSKWKGICQNDKDARF 119
I N W+ G+ I + +DTGV K+FG ++
Sbjct: 168 IGANDAWDLGYTGKGIKVAIIDTGVEYNHPDLKKNFG---------------------QY 206
Query: 120 HCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGS 179
+ + DY + P A D HG+H N GT KG +
Sbjct: 207 KGYDFVDNDYDPKETPTGDPRGEATD---HGTHVAGTVAAN------------GTIKGVA 251
Query: 180 PKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----------VAIGSFHA 229
P A + Y+ G G + ++IA + A+ DG D++++SL + A
Sbjct: 252 PDATLLAYRVLGPGGSGTTE-NVIAGVERAVQDGADVMNLSLGNSLNNPDWATSTALDWA 310
Query: 230 VQHGIVVVCSDGNEGLVDVTLQN--AAPRQIVVGASTMDRD--------LSNYVVLG--- 276
+ G+V V S+GN G T+ + + I VGA+ + + S+ V+G
Sbjct: 311 MSEGVVAVTSNGNSGPNGWTVGSPGTSREAISVGATQLPLNEYAVTFGSYSSAKVMGYNK 370
Query: 277 -------NNKRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCL--NVRSVDEGLQA 327
NNK +L+ G+ K F + K + GK+ V ++ VD+ A
Sbjct: 371 EDDVKALNNKEVELVE---AGIGEAKDF------EGKDLTGKVAVVKRGSIAFVDKADNA 421
Query: 328 ALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPTTEF 387
AGA +V+ N + +P ++ DG V +K T+
Sbjct: 422 KKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDG---------EKLVSALKAGETKT 472
Query: 388 GAKP------APYMAALSSKGPIH----ITPEI------LKRRIP---------FNSISG 422
K +A SS+GP+ I P+I + IP + S G
Sbjct: 473 TFKLTVSKALGEQVADFSSRGPVMDTWMIKPDISAPGVNIVSTIPTHDPDHPYGYGSKQG 532
Query: 423 TSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQI 467
TSM+ P+I+G + K P WS +++AIM TA T + ++
Sbjct: 533 TSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDGEV 577
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 620 | ||||||
| 225447456 | 769 | PREDICTED: subtilisin-like protease [Vit | 0.985 | 0.794 | 0.606 | 0.0 | |
| 227053577 | 771 | subtilisin-like serine protease [Carica | 0.990 | 0.796 | 0.590 | 0.0 | |
| 224129258 | 769 | predicted protein [Populus trichocarpa] | 0.987 | 0.795 | 0.594 | 0.0 | |
| 255567212 | 771 | Xylem serine proteinase 1 precursor, put | 0.988 | 0.795 | 0.584 | 0.0 | |
| 356510927 | 773 | PREDICTED: subtilisin-like protease-like | 0.982 | 0.787 | 0.585 | 0.0 | |
| 449453760 | 758 | PREDICTED: subtilisin-like protease-like | 0.985 | 0.806 | 0.580 | 0.0 | |
| 357462409 | 772 | Subtilisin-like protease [Medicago trunc | 0.987 | 0.792 | 0.579 | 0.0 | |
| 225462068 | 745 | PREDICTED: subtilisin-like protease-like | 0.987 | 0.821 | 0.570 | 0.0 | |
| 296090005 | 803 | unnamed protein product [Vitis vinifera] | 0.987 | 0.762 | 0.565 | 0.0 | |
| 356525207 | 773 | PREDICTED: subtilisin-like protease-like | 0.983 | 0.789 | 0.571 | 0.0 |
| >gi|225447456|ref|XP_002266728.1| PREDICTED: subtilisin-like protease [Vitis vinifera] gi|296085071|emb|CBI28486.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/688 (60%), Positives = 481/688 (69%), Gaps = 77/688 (11%)
Query: 5 HAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRI 64
AI YSYTRHINGFAA L D AA++A HPKVVSVFL+K +KLHTT SW FLGLE +G I
Sbjct: 71 EAIIYSYTRHINGFAATLQDHEAAQIANHPKVVSVFLNKGRKLHTTRSWHFLGLENDGII 130
Query: 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCN-- 122
P NSIW+KAR+G+D IIGNLDTGVW ES SF DEG GPIPS+W+GICQNDKDA FHCN
Sbjct: 131 PSNSIWKKARFGQDTIIGNLDTGVWPESASFSDEGMGPIPSRWRGICQNDKDAGFHCNRK 190
Query: 123 ----RYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGG 178
RYF+Q YA G LNSSF++ RD GHGSHTLS AGGNFV GASVFGFG GTAKGG
Sbjct: 191 LIGARYFHQGYAAAVGSLNSSFHTPRDTEGHGSHTLSTAGGNFVEGASVFGFGNGTAKGG 250
Query: 179 SPKARVAGYKACWDGMGG--CYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIG 225
SPKARVA YK CW +GG C+D DI+AAFD+AIHDGVD+LS SL ++IG
Sbjct: 251 SPKARVAAYKVCWPPVGGNECFDADILAAFDIAIHDGVDVLSASLGGLPTPFFNDSLSIG 310
Query: 226 SFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLIS 285
SFHAV+HGIVVVCS GN G D T+ N +P Q VGASTMDR +Y+VLGN KR + S
Sbjct: 311 SFHAVKHGIVVVCSAGNSGPADGTVSNISPWQFTVGASTMDRQFPSYLVLGNKKRLEGGS 370
Query: 286 ERAKGLPSDKLFTFIR--------------------TLDPKKVKGKILVCL---NVRSVD 322
K LP +K F I TLD KVKGKILVCL N R VD
Sbjct: 371 LSPKALPPNKFFPLISAADAKAANASADDALLCKAGTLDHSKVKGKILVCLRGENAR-VD 429
Query: 323 EGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTF---TRHPVGY 379
+G QAALAGA +VL N GN+ D HVLPAS I F DG FT+ T+ P+ Y
Sbjct: 430 KGQQAALAGAVGMVLANNELTGNEVIADPHVLPASHINFTDGV--AVFTYLNSTKSPIAY 487
Query: 380 IKRPTTEFGAKPAPYMAALSSKGPIHITPEIL---------------------------K 412
I TTE G KPAP+MAA SSKGP ITPEIL K
Sbjct: 488 ITPSTTELGTKPAPFMAAFSSKGPNTITPEILKPDITAPGVSVIAAYTEAQGPTNQDFDK 547
Query: 413 RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASF 472
RR+ FNS+SGTSMS P++SGI GL K LHPDWSPAA++SA+MTTA T DN + IL+AS+
Sbjct: 548 RRVLFNSVSGTSMSCPHVSGIVGLLKTLHPDWSPAAIRSAMMTTARTMDNSMEAILNASY 607
Query: 473 TEATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKN 532
+ATPFSYGAGHV+PN AM+PGLVY L VNDYLNFLCALGYN+ +I +FS YTCPK
Sbjct: 608 FKATPFSYGAGHVRPNRAMNPGLVYDLNVNDYLNFLCALGYNQTLIKMFSER-PYTCPK- 665
Query: 533 AIILVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAPKSLKFINV 592
I L NFNYPSITVPKL GSITVTR +KNVG PGTY+AR++ P G+SV++ P SLKF +
Sbjct: 666 PISLTNFNYPSITVPKLHGSITVTRTLKNVGPPGTYKARIRKPTGISVSVKPDSLKFNKI 725
Query: 593 GEEKSFKVNIKAKNASVTKDYVFGELIW 620
GEEK+F + ++A+ A +DYVFGELIW
Sbjct: 726 GEEKTFSLTLQAERAGAARDYVFGELIW 753
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227053577|gb|ACP18876.1| subtilisin-like serine protease [Carica papaya] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/686 (59%), Positives = 474/686 (69%), Gaps = 72/686 (10%)
Query: 5 HAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRI 64
+IFYSYT+HINGFAA+L D VAA++AKHPKVVSVFL+K +KLHTT SW+FLGLEQNG +
Sbjct: 71 ESIFYSYTKHINGFAAELNDEVAAKLAKHPKVVSVFLNKGRKLHTTRSWDFLGLEQNGVV 130
Query: 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCN-- 122
P +SIW+KAR+GED IIGNLDTGVW ESKSF DEG GPIPSKW+GIC + KD+ FHCN
Sbjct: 131 PSSSIWKKARFGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWRGICDHGKDSSFHCNRK 190
Query: 123 ----RYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGG 178
R+FN+ YA G LNSSF S RD GHG+HTLS AGGN VA ASVFG GKGTAKGG
Sbjct: 191 LIGARFFNRGYASAVGSLNSSFESPRDNEGHGTHTLSTAGGNMVANASVFGLGKGTAKGG 250
Query: 179 SPKARVAGYKACWDGMGG--CYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIG 225
SP+ARVA YK CW + G C+D DI+AAFD AIHD VD+LSVSL VAIG
Sbjct: 251 SPRARVAAYKVCWPPVLGNECFDADILAAFDAAIHDRVDVLSVSLGGTAGGFFNDSVAIG 310
Query: 226 SFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLIS 285
SFHAV+HGIVVVCS GN G D ++ N AP QI VGASTMDR+ +YV+LGNN FK S
Sbjct: 311 SFHAVKHGIVVVCSAGNSGPDDGSVSNVAPWQITVGASTMDREFPSYVLLGNNMSFKGES 370
Query: 286 ERAKGLPSDKLFTFIR--------------------TLDPKKVKGKILVC---LNVRSVD 322
LP F I LDPKKVKGKILVC LN R VD
Sbjct: 371 LSDAVLPGTNFFPLISALNAKATNASNEEAILCEAGALDPKKVKGKILVCLRGLNAR-VD 429
Query: 323 EGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNL-FFTFTRHPVGYIK 381
+G QAALAGA ++L N GN+ D HVLPAS I+F DG + T PV Y+
Sbjct: 430 KGQQAALAGAVGMILANSELNGNEIIADAHVLPASHISFTDGLSVFEYINLTNSPVAYMT 489
Query: 382 RPTTEFGAKPAPYMAALSSKGPIHITPEILK---------------------------RR 414
RP T+ KPAP MAA SSKGP +TPEILK RR
Sbjct: 490 RPKTKLPTKPAPVMAAFSSKGPNIVTPEILKPDITAPGVNVIAAYTRAQGPTNQNFDRRR 549
Query: 415 IPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTE 474
+ FNS+SGTSMS P++SGI GL K L+P WSPAA++SAIMT+ATT DN + IL+AS +
Sbjct: 550 VQFNSVSGTSMSCPHVSGIVGLLKTLYPSWSPAAIRSAIMTSATTMDNINESILNASNVK 609
Query: 475 ATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNAI 534
ATPFSYGAGHVQPN AM+PGLVY L DYL FLCALGY+K +IS+FS N + CP+ I
Sbjct: 610 ATPFSYGAGHVQPNQAMNPGLVYDLNTKDYLKFLCALGYSKTLISIFS-NDKFNCPRTNI 668
Query: 535 ILVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAPKSLKFINVGE 594
L +FNYPSITVP+L G IT++R+VKNVGSP TY+ V+ P+G+SVT+ PK LKF GE
Sbjct: 669 SLADFNYPSITVPELKGLITLSRKVKNVGSPTTYRVTVQKPKGISVTVKPKILKFKKAGE 728
Query: 595 EKSFKVNIKAKNASVTKDYVFGELIW 620
EKSF V +K K + TK+YVFGEL+W
Sbjct: 729 EKSFTVTLKMKAKNPTKEYVFGELVW 754
|
Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129258|ref|XP_002320540.1| predicted protein [Populus trichocarpa] gi|222861313|gb|EEE98855.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/685 (59%), Positives = 476/685 (69%), Gaps = 73/685 (10%)
Query: 6 AIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIP 65
AIFYSYTRHINGFAA L D VAAE+AKHP+VVSVFL++ +K HTTHSW FLGLE++G +P
Sbjct: 72 AIFYSYTRHINGFAATLEDEVAAEIAKHPRVVSVFLNQGRKQHTTHSWSFLGLEKDGVVP 131
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCN--- 122
+SIW+KAR+GED IIGNLDTGVW ES+SF DEG GP+PSKWKGICQN D FHCN
Sbjct: 132 SSSIWKKARFGEDAIIGNLDTGVWPESESFSDEGLGPVPSKWKGICQNGYDPGFHCNRKL 191
Query: 123 ---RYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGS 179
RYFN+ YA G LNSSF + RD++GHGSHTLS AGGNFVAGASVF G GTAKGGS
Sbjct: 192 IGARYFNKGYASIVGHLNSSFDTPRDEDGHGSHTLSTAGGNFVAGASVFYMGNGTAKGGS 251
Query: 180 PKARVAGYKACWDGMGG--CYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIGS 226
PKARVA YK C+ + G C+D DI+AAFD AI DGVD+LSVSL VAIGS
Sbjct: 252 PKARVAAYKVCYPPVDGDECFDADILAAFDAAISDGVDVLSVSLGGNPTAFFNDSVAIGS 311
Query: 227 FHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISE 286
FHAV+HGIVV+CS GN G VD T+ N AP +I VGASTMDR+ +YVVLGN FK S
Sbjct: 312 FHAVKHGIVVICSAGNSGPVDGTVSNVAPWEITVGASTMDREFPSYVVLGNKISFKGESL 371
Query: 287 RAKGLPSDKLFTFIR--------------------TLDPKKVKGKILVCL---NVRSVDE 323
AK LP +K F + +LDP+K KGKILVCL N R VD+
Sbjct: 372 SAKALPKNKFFPLMSAADARATNASVENALLCKDGSLDPEKAKGKILVCLRGINAR-VDK 430
Query: 324 GLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNL-FFTFTRHPVGYIKR 382
G QAALAGA +VL N + GN+ D HVLP S I + G + T +PV YI
Sbjct: 431 GQQAALAGAVGMVLANNKDAGNEILADPHVLPVSHINYTSGVAIFKYINSTEYPVAYITH 490
Query: 383 PTTEFGAKPAPYMAALSSKGPIHITPEILK---------------------------RRI 415
P T G KPAP +AA SSKGP +TPEILK RR+
Sbjct: 491 PVTRIGTKPAPVVAAFSSKGPNTVTPEILKPDITAPGVSVIAAYTKAQGPTNQDFDTRRV 550
Query: 416 PFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEA 475
FNS+SGTSMS P++SGI GL K LHP WSPA+++SAIMTTA TQDN + IL+A+ T+A
Sbjct: 551 LFNSVSGTSMSCPHVSGIVGLLKTLHPTWSPASIKSAIMTTAMTQDNTMEPILNANHTKA 610
Query: 476 TPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNAII 535
+PFSYGAGH++PN AMDPGLVY LTVNDYLN LCALGYN+ IS FS + Y CP I
Sbjct: 611 SPFSYGAGHIRPNKAMDPGLVYDLTVNDYLNLLCALGYNETQISTFS-DAPYECPSKPIS 669
Query: 536 LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAPKSLKFINVGEE 595
L NFNYPSITVPK +GSIT++R VKNVGSP TY+ R++ P GVSV++ PK L+F VGEE
Sbjct: 670 LANFNYPSITVPKFNGSITLSRTVKNVGSPSTYKLRIRKPTGVSVSVEPKKLEFKKVGEE 729
Query: 596 KSFKVNIKAKNASVTKDYVFGELIW 620
K+F V +K K + KDYVFGELIW
Sbjct: 730 KAFTVTLKGKGKAA-KDYVFGELIW 753
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567212|ref|XP_002524587.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223536140|gb|EEF37795.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/686 (58%), Positives = 478/686 (69%), Gaps = 73/686 (10%)
Query: 6 AIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIP 65
+IFYSYTRHINGFAA + D VAAE+AKHPKVVSVFL++ KKLHTTHSW FLGLEQ+G +P
Sbjct: 72 SIFYSYTRHINGFAANIEDEVAAEIAKHPKVVSVFLNRGKKLHTTHSWSFLGLEQDGVVP 131
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCN--- 122
NS+W+KARYG+DIIIGNLDTGVW ESKSF D G+GPIPSKW+GICQN D HCN
Sbjct: 132 SNSLWKKARYGQDIIIGNLDTGVWPESKSFSDGGYGPIPSKWRGICQNGSDPYLHCNRKL 191
Query: 123 ---RYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGS 179
RYFN+ YA G LNS+F S RD+ GHG+HTLS AGGNFVAGASVFG GKG AKGGS
Sbjct: 192 IGARYFNKGYASVVGHLNSTFDSPRDREGHGTHTLSTAGGNFVAGASVFGLGKGKAKGGS 251
Query: 180 PKARVAGYKACWDGMGG--CYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIGS 226
PKARVA YK C+ +GG C+D DI+AAFD AI DGVD+LSVSL VAIGS
Sbjct: 252 PKARVAAYKVCYPPVGGNECFDADILAAFDTAISDGVDVLSVSLGGEAAQLFNDSVAIGS 311
Query: 227 FHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISE 286
FHAV+HGIVV+CS GN G D T N AP QI VGAST+DR+ +YVVLGNN +K S
Sbjct: 312 FHAVKHGIVVICSAGNSGPADGTASNLAPWQITVGASTIDREFPSYVVLGNNISYKGESL 371
Query: 287 RAKGLPSDKLFTFIR--------------------TLDPKKVKGKILVCL---NVRSVDE 323
K LP +K + + +LD KK KGKILVCL N R VD+
Sbjct: 372 SKKALPKNKFYPLMSAADARAANASVEDAKLCKAGSLDRKKAKGKILVCLRGVNAR-VDK 430
Query: 324 GLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNL-FFTFTRHPVGYIKR 382
G QAA AGA +VLVN + GN+ D H+LPAS + + +G L + T++P+ ++ R
Sbjct: 431 GQQAARAGAVGMVLVNDKDSGNEILADVHILPASHLNYTNGVAILNYINSTKYPIAHVTR 490
Query: 383 PTTEFGAKPAPYMAALSSKGPIHITPEILK---------------------------RRI 415
P T G KPAP+MAA SS+GP ITPEILK RR+
Sbjct: 491 PETHIGTKPAPFMAAFSSRGPNTITPEILKPDITAPGVSIIAAYTQAAGPTNEDFDTRRV 550
Query: 416 PFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEA 475
FNS+SGTSMS P++SGI GL KILHP WSPAA++SAIMTTA T+DN ++ IL+A++++A
Sbjct: 551 LFNSVSGTSMSCPHVSGIVGLLKILHPTWSPAAIKSAIMTTAMTRDNNREPILNATYSKA 610
Query: 476 TPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNAII 535
PFSYGAGH++PN AM+PGLVY LT NDYLNFLCALGYN+ I FS Y CP +
Sbjct: 611 NPFSYGAGHIRPNQAMEPGLVYDLTANDYLNFLCALGYNETQILSFS-QAPYKCPNKLVN 669
Query: 536 LVNFNYPSITVPKLSGSITVTRRVKNVGSP-GTYQARVKTPQGVSVTMAPKSLKFINVGE 594
L NFNYPSITVPK GSITVTRRVKNVGSP TY+ ++ P G+SV++ P+ L F +GE
Sbjct: 670 LANFNYPSITVPKFKGSITVTRRVKNVGSPSSTYKVSIRKPTGISVSVEPEILNFREIGE 729
Query: 595 EKSFKVNIKAKNASVTKDYVFGELIW 620
EK+FKV +K K K+YVFGEL W
Sbjct: 730 EKTFKVTLKGKKFKARKEYVFGELTW 755
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510927|ref|XP_003524185.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/687 (58%), Positives = 467/687 (67%), Gaps = 78/687 (11%)
Query: 6 AIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIP 65
+IFYSYTRHINGFAA L + VAAE++KHPKV+SVF ++ +KLHTT SW+F+GLE NG I
Sbjct: 73 SIFYSYTRHINGFAAILEEEVAAEISKHPKVLSVFENRGRKLHTTRSWDFMGLEHNGVIQ 132
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCN--- 122
NSIW+KAR+GE +IIGNLDTGVW ESKSF +EG GPIPSKW+GIC N D FHCN
Sbjct: 133 SNSIWKKARFGEGVIIGNLDTGVWPESKSFSEEGLGPIPSKWRGICHNGIDHTFHCNRKL 192
Query: 123 ---RYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGS 179
RYFN+ YA GPLNSSF S RD GHG+HTLS AGGN VA SVFG G GTAKGGS
Sbjct: 193 IGARYFNKGYASVAGPLNSSFDSPRDNEGHGTHTLSTAGGNMVARVSVFGQGHGTAKGGS 252
Query: 180 PKARVAGYKACWDGMGG--CYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIGS 226
P ARVA YK CW + G C+D DI+AAFD+AIHDGVD+LS+SL VAIGS
Sbjct: 253 PMARVAAYKVCWPPVAGDECFDADILAAFDLAIHDGVDVLSLSLGGSASTFFKDSVAIGS 312
Query: 227 FHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISE 286
FHA +HGIVVVCS GN G D T +N AP + V ASTMDR YV LGNN FK S
Sbjct: 313 FHAAKHGIVVVCSAGNSGPADATAENLAPWHVTVAASTMDRQFPTYVFLGNNITFKGESL 372
Query: 287 RAKGLPSDKLFTFIR--------------------TLDPKKVKGKILVCL---NVRSVDE 323
A L + K + I+ TLDP KVKGKI+VCL N R VD+
Sbjct: 373 SATIL-APKFYPIIKATDAKLASARAEDAVLCQNGTLDPNKVKGKIVVCLRGINAR-VDK 430
Query: 324 GLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTF---TRHPVGYI 380
G QA LAGA +VL N GN+ D HVLPAS I F DG + FT+ T+ PV YI
Sbjct: 431 GEQAFLAGAVGMVLANDKTTGNEIIADPHVLPASHINFTDG--SAVFTYINSTKFPVAYI 488
Query: 381 KRPTTEFGAKPAPYMAALSSKGPIHITPEIL---------------------------KR 413
P T+ KPAP+MAA SSKGP I PEIL KR
Sbjct: 489 THPKTQLDTKPAPFMAAFSSKGPNTIVPEILKPDITAPGVSVIAAYTEAQGPTNQVFDKR 548
Query: 414 RIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFT 473
RIPFNS+SGTSMS P++SGI GL + L+P WSPAA++SAIMTTATT DN+ + +L+A+
Sbjct: 549 RIPFNSVSGTSMSCPHVSGIVGLLRALYPTWSPAAIKSAIMTTATTLDNEVEPLLNATDG 608
Query: 474 EATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNA 533
+ATPFSYGAGHVQPN AMDPGLVY T++DYLNFLCALGYN IS+F T Y C K
Sbjct: 609 KATPFSYGAGHVQPNRAMDPGLVYDTTIDDYLNFLCALGYNATQISVF-TEGPYQCRKK- 666
Query: 534 IILVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAPKSLKFINVG 593
L+N NYPSITVPKLSGS+TVTRR+KNVGSPGTY A V+ P G+++++ P LKF NVG
Sbjct: 667 FSLLNLNYPSITVPKLSGSVTVTRRLKNVGSPGTYIAHVQNPHGITISVKPSILKFKNVG 726
Query: 594 EEKSFKVNIKAKNASVTKDYVFGELIW 620
EEKSFKV KA T +YVFG+LIW
Sbjct: 727 EEKSFKVTFKAMQGKATNNYVFGKLIW 753
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453760|ref|XP_004144624.1| PREDICTED: subtilisin-like protease-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/686 (58%), Positives = 469/686 (68%), Gaps = 75/686 (10%)
Query: 7 IFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLE-QNGRIP 65
IFYSYTRHINGFAA L D VA ++AKHPKVVSVFL++ +KLHTT SWEF+GLE +NG I
Sbjct: 60 IFYSYTRHINGFAAMLEDEVAVQLAKHPKVVSVFLNRGRKLHTTRSWEFMGLENKNGVIN 119
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNR-- 123
SIW+KAR+GED IIGNL+ GVW ESKSF D+ +GPIP +WKGICQN KD FHCNR
Sbjct: 120 SESIWKKARFGEDTIIGNLEIGVWAESKSFSDDEYGPIPHRWKGICQNQKDPSFHCNRKL 179
Query: 124 ----YFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGS 179
YFN+ YA GPLNSSF+S RDK GHGSHTLS AGGNFVAGASVFG GKGTAKGGS
Sbjct: 180 IGARYFNKGYASVVGPLNSSFHSPRDKEGHGSHTLSTAGGNFVAGASVFGLGKGTAKGGS 239
Query: 180 PKARVAGYKACWDGMGG--CYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIGS 226
P+ARVA YK CW G C+D DI+AAFD AIHDGVD+LSVSL VAIGS
Sbjct: 240 PRARVAAYKVCWPPKAGNECFDADILAAFDFAIHDGVDVLSVSLGGDPNPLFNDSVAIGS 299
Query: 227 FHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISE 286
FHA++HGIVV+CS GN G T+ N AP QI VGASTMDR + VVLGN K+ + S
Sbjct: 300 FHAIKHGIVVICSAGNSGPAAGTVTNVAPWQITVGASTMDRKFPSLVVLGNRKQIEGESL 359
Query: 287 RAKGLPSDKLFTFIR--------------------TLDPKKVKGKILVCL---NVRSVDE 323
LPS KL+ + TL+P K KGKILVCL N R VD+
Sbjct: 360 SQDALPSKKLYPLMNAADVRLANASVHEAQLCKAGTLNPMKAKGKILVCLRGDNAR-VDK 418
Query: 324 GLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNL-FFTFTRHPVGYIKR 382
G QA LAGAA ++L N GN+ D HVLPAS I F DG + T++P YI
Sbjct: 419 GEQALLAGAAGMILANNELSGNEILADPHVLPASHINFTDGSAVFAYINSTKYPEAYITP 478
Query: 383 PTTEFGAKPAPYMAALSSKGPIHITPEILK---------------------------RRI 415
TT+ G +PAP+MAA SS GP +TPEILK RRI
Sbjct: 479 ATTQLGIRPAPFMAAFSSVGPNTVTPEILKPDITAPGLSVIAAYTEAEGPTNQEFDNRRI 538
Query: 416 PFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEA 475
PFNS+SGTSMS P++SGIAGL K L+P WSPAA++SAIMTTA+ DN + +L+AS++ A
Sbjct: 539 PFNSVSGTSMSCPHVSGIAGLLKTLYPHWSPAAIKSAIMTTASILDNNFEPLLNASYSVA 598
Query: 476 TPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNAII 535
+PF+YGAGHV PN A DPGLVY + VN+YL+FLCALGYNK IS FS N + C + I
Sbjct: 599 SPFNYGAGHVHPNGAADPGLVYDIEVNEYLSFLCALGYNKAQISQFS-NGPFNC-SDPIS 656
Query: 536 LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAPKSLKFINVGEE 595
N NYPSITVPKLS SIT+TRR+KNVGSPGTY+A ++ P G+SV + PK L F +GEE
Sbjct: 657 PTNLNYPSITVPKLSRSITITRRLKNVGSPGTYKAEIRKPAGISVWVKPKKLSFTRLGEE 716
Query: 596 KSFKVNIKAKNASVT-KDYVFGELIW 620
SFKV +K K V K+YV+G+LIW
Sbjct: 717 LSFKVLMKVKERKVAKKNYVYGDLIW 742
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462409|ref|XP_003601486.1| Subtilisin-like protease [Medicago truncatula] gi|355490534|gb|AES71737.1| Subtilisin-like protease [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/688 (57%), Positives = 466/688 (67%), Gaps = 76/688 (11%)
Query: 5 HAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQN-GR 63
+IFYSYTRHINGFAA L + VAAE+AKHPKV+SVF + +KLHTTHSW F+GLE + G
Sbjct: 73 ESIFYSYTRHINGFAATLEEEVAAEIAKHPKVLSVFENNGRKLHTTHSWGFMGLEDSYGV 132
Query: 64 IPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNR 123
IP +SIW KAR+G+ III NLDTGVW ESKSF DEGFGPIPSKW+GIC +D FHCNR
Sbjct: 133 IPSSSIWNKARFGDGIIIANLDTGVWPESKSFSDEGFGPIPSKWRGICDKGRDPSFHCNR 192
Query: 124 ------YFNQDYAVH-KGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAK 176
YFN+ YA PLNSSF + RD GHGSHTLS AGGN V G SVFG G GTAK
Sbjct: 193 KLIGARYFNKGYASRLTVPLNSSFETPRDNEGHGSHTLSTAGGNMVPGVSVFGQGYGTAK 252
Query: 177 GGSPKARVAGYKACWDGMGG--CYDCDIIAAFDMAIHDGVDMLSVSL-----------VA 223
GGSPKARVA YK CW + G C+D DI+AAFD AIHDGVD+LSVSL VA
Sbjct: 253 GGSPKARVASYKVCWPPINGDECFDADILAAFDAAIHDGVDVLSVSLGGSASNLFNDSVA 312
Query: 224 IGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKL 283
IGSFHA + GIVVVCS GN G D T N AP I VGASTMDR+ +YVVLGNN FK
Sbjct: 313 IGSFHAAKKGIVVVCSAGNSGPNDATASNLAPWYITVGASTMDREFPSYVVLGNNLTFKG 372
Query: 284 ISERAKGLPSDKLFTFIR--------------------TLDPKKVKGKILVCL---NVRS 320
S A L +DK + I+ TLDPKKVKGKI++CL N R
Sbjct: 373 ESLSAARL-ADKFYPIIKATDAKLASATNEDAVLCQNGTLDPKKVKGKIVLCLRGINAR- 430
Query: 321 VDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNL-FFTFTRHPVGY 379
VD+G QA LAGA +VL N GN+ D HVLPAS I F+DG + ++ PV Y
Sbjct: 431 VDKGEQALLAGAVGMVLANDKTTGNEIIADPHVLPASHINFSDGVEVFHYVNSSKSPVAY 490
Query: 380 IKRPTTEFGAKPAPYMAALSSKGPIHITPEILK--------------------------- 412
I PTT+ KPAP+MAA SSKGP I PEILK
Sbjct: 491 ITHPTTKLHTKPAPFMAAFSSKGPNTIIPEILKPDITAPGVSVIAAYTEAEGPTNQEFDN 550
Query: 413 RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASF 472
RRI FNS+SGTSMS P+ISGI GL + L+P W+PAA++SAIMTTATT DNK + I++A+
Sbjct: 551 RRIQFNSVSGTSMSCPHISGIVGLLRSLYPSWTPAAIKSAIMTTATTLDNKAEPIMNATK 610
Query: 473 TEATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKN 532
++ATPFSYGAGHVQPN AMDPGLVY +T NDY NFLCALGYN+ +SLFS Y C KN
Sbjct: 611 SQATPFSYGAGHVQPNSAMDPGLVYDITTNDYFNFLCALGYNETQMSLFSKG-PYKCHKN 669
Query: 533 AIILVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAPKSLKFINV 592
IL N NYPSITVP LSGS+TVTR +KNVG+PGTY V++P G+++++ P L+F V
Sbjct: 670 FSIL-NLNYPSITVPNLSGSVTVTRTLKNVGAPGTYIVHVQSPSGITISVKPNILEFKKV 728
Query: 593 GEEKSFKVNIKAKNASVTKDYVFGELIW 620
GEEK F+V +K K TK YVFG++IW
Sbjct: 729 GEEKRFEVKLKVKKGKATKSYVFGKMIW 756
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462068|ref|XP_002269877.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/685 (57%), Positives = 472/685 (68%), Gaps = 73/685 (10%)
Query: 6 AIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIP 65
A+FYSY ++INGFAA L + AAE+AKHP V+SVFL+K +KLHTT SW FL LE+NG I
Sbjct: 49 AMFYSYNKNINGFAAILEEEEAAEIAKHPNVISVFLNKGRKLHTTRSWHFLDLEKNGVIQ 108
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCN--- 122
PNSIW+KAR+GED IIGNLDTGVW ESKSF DEG G +PSKW+G CQ++ CN
Sbjct: 109 PNSIWKKARFGEDTIIGNLDTGVWPESKSFSDEGMGLVPSKWRGTCQDETKNAVTCNRKL 168
Query: 123 ---RYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGS 179
RYFN+ YA + GPLNSSF SARD GHGSHTLS AGG+ V GASVFG+G GTAKGGS
Sbjct: 169 IGARYFNKGYAAYAGPLNSSFNSARDHEGHGSHTLSTAGGSLVYGASVFGYGNGTAKGGS 228
Query: 180 PKARVAGYKACWDGM--GGCYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIGS 226
P ARVA YK CW + GGC+D DI+AAFD AIHDGVD+LSVSL +AIGS
Sbjct: 229 PGARVAAYKVCWPQVNNGGCFDADIMAAFDAAIHDGVDVLSVSLGGDASDYFTDGLAIGS 288
Query: 227 FHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISE 286
FHAV+ GIVVV S GN+G D ++ N +P I VGAST+DR+ +NYV LGN K K +S
Sbjct: 289 FHAVKRGIVVVSSAGNDGPKDASVSNVSPWMITVGASTIDREFTNYVALGNRKHLKGMSL 348
Query: 287 RAKGLPSDKLFTFIRTLD--------------------PKKVKGKILVCLNVRS--VDEG 324
KGLPS+K + I +LD PKKVKGKILVCL + VD+G
Sbjct: 349 STKGLPSNKFYPVISSLDAKAANASAQDAILCKPGTLNPKKVKGKILVCLRGENPRVDKG 408
Query: 325 LQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDG--YYNLFFTFTRHPVGYIKR 382
QAALAGA +L N + GN+ D HVLPAS + F+DG +N + T++P+ Y+ R
Sbjct: 409 EQAALAGAVGFILANDMQSGNELIADPHVLPASHVNFSDGAAVFN-YINSTKNPMAYLTR 467
Query: 383 PTTEFGAKPAPYMAALSSKGPIHITPEIL---------------------------KRRI 415
T+ G KPAP+MA+ SSKGP ITPEIL KRRI
Sbjct: 468 VRTQLGIKPAPFMASFSSKGPNTITPEILKPDITAPGVNIIAAYSESIGPTDQTFDKRRI 527
Query: 416 PFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEA 475
PFN+ SGTSMS P+ISGI GL K LHPDWSPAA++SAIMT+A T+D+ + +L++S +A
Sbjct: 528 PFNAQSGTSMSCPHISGIVGLLKTLHPDWSPAAIKSAIMTSARTRDDNMEPMLNSSNLKA 587
Query: 476 TPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNAII 535
TPFSYGAGHV+PN AMDPGLVY TVNDYLNFLCA+GYN+ + +FS Y CPK +
Sbjct: 588 TPFSYGAGHVRPNRAMDPGLVYDSTVNDYLNFLCAIGYNETQLQIFSQK-PYKCPK-SFS 645
Query: 536 LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAPKSLKFINVGEE 595
L FNYPSIT P LSGS+T++R VKNVG+PGTY A VK P G+SV + P L+F GEE
Sbjct: 646 LTGFNYPSITAPNLSGSVTISRTVKNVGTPGTYTASVKAPPGISVAVKPNKLEFREYGEE 705
Query: 596 KSFKVNIKAKNASVTKDYVFGELIW 620
KSF++ +KAK V +DYVFG LIW
Sbjct: 706 KSFRLTLKAKGRRVAEDYVFGRLIW 730
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090005|emb|CBI39824.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/691 (56%), Positives = 472/691 (68%), Gaps = 79/691 (11%)
Query: 6 AIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIP 65
A+FYSY ++INGFAA L + AAE+AKHP V+SVFL+K +KLHTT SW FL LE+NG I
Sbjct: 101 AMFYSYNKNINGFAAILEEEEAAEIAKHPNVISVFLNKGRKLHTTRSWHFLDLEKNGVIQ 160
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCN--- 122
PNSIW+KAR+GED IIGNLDTGVW ESKSF DEG G +PSKW+G CQ++ CN
Sbjct: 161 PNSIWKKARFGEDTIIGNLDTGVWPESKSFSDEGMGLVPSKWRGTCQDETKNAVTCNRKL 220
Query: 123 ---RYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGS 179
RYFN+ YA + GPLNSSF SARD GHGSHTLS AGG+ V GASVFG+G GTAKGGS
Sbjct: 221 IGARYFNKGYAAYAGPLNSSFNSARDHEGHGSHTLSTAGGSLVYGASVFGYGNGTAKGGS 280
Query: 180 PKARVAGYKACWDGM--GGCYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIGS 226
P ARVA YK CW + GGC+D DI+AAFD AIHDGVD+LSVSL +AIGS
Sbjct: 281 PGARVAAYKVCWPQVNNGGCFDADIMAAFDAAIHDGVDVLSVSLGGDASDYFTDGLAIGS 340
Query: 227 FHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKL--- 283
FHAV+ GIVVV S GN+G D ++ N +P I VGAST+DR+ +NYV LGN K K
Sbjct: 341 FHAVKRGIVVVSSAGNDGPKDASVSNVSPWMITVGASTIDREFTNYVALGNRKHLKNEHL 400
Query: 284 ---ISERAKGLPSDKLFTFIRTLD--------------------PKKVKGKILVCLNVRS 320
+S KGLPS+K + I +LD PKKVKGKILVCL +
Sbjct: 401 QMGMSLSTKGLPSNKFYPVISSLDAKAANASAQDAILCKPGTLNPKKVKGKILVCLRGEN 460
Query: 321 --VDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDG--YYNLFFTFTRHP 376
VD+G QAALAGA +L N + GN+ D HVLPAS + F+DG +N + T++P
Sbjct: 461 PRVDKGEQAALAGAVGFILANDMQSGNELIADPHVLPASHVNFSDGAAVFN-YINSTKNP 519
Query: 377 VGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEIL------------------------- 411
+ Y+ R T+ G KPAP+MA+ SSKGP ITPEIL
Sbjct: 520 MAYLTRVRTQLGIKPAPFMASFSSKGPNTITPEILKPDITAPGVNIIAAYSESIGPTDQT 579
Query: 412 --KRRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILD 469
KRRIPFN+ SGTSMS P+ISGI GL K LHPDWSPAA++SAIMT+A T+D+ + +L+
Sbjct: 580 FDKRRIPFNAQSGTSMSCPHISGIVGLLKTLHPDWSPAAIKSAIMTSARTRDDNMEPMLN 639
Query: 470 ASFTEATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTC 529
+S +ATPFSYGAGHV+PN AMDPGLVY TVNDYLNFLCA+GYN+ + +FS Y C
Sbjct: 640 SSNLKATPFSYGAGHVRPNRAMDPGLVYDSTVNDYLNFLCAIGYNETQLQIFSQK-PYKC 698
Query: 530 PKNAIILVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAPKSLKF 589
PK + L FNYPSIT P LSGS+T++R VKNVG+PGTY A VK P G+SV + P L+F
Sbjct: 699 PK-SFSLTGFNYPSITAPNLSGSVTISRTVKNVGTPGTYTASVKAPPGISVAVKPNKLEF 757
Query: 590 INVGEEKSFKVNIKAKNASVTKDYVFGELIW 620
GEEKSF++ +KAK V +DYVFG LIW
Sbjct: 758 REYGEEKSFRLTLKAKGRRVAEDYVFGRLIW 788
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525207|ref|XP_003531218.1| PREDICTED: subtilisin-like protease-like [Glycine max] gi|33621210|gb|AAQ23176.1| subtilisin-like protease [Glycine max] gi|409032216|gb|AFV08660.1| subtilisin-like protease [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/686 (57%), Positives = 464/686 (67%), Gaps = 76/686 (11%)
Query: 6 AIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIP 65
+IFYSYTRHINGFAA L + VA E+AKHPKV+SVF ++ +KLHTT SW+F+ LE NG I
Sbjct: 73 SIFYSYTRHINGFAATLDEEVAVEIAKHPKVLSVFENRGRKLHTTRSWDFMELEHNGVIQ 132
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCN--- 122
+SIW+KAR+GE +IIGNLDTGVW ESKSF ++G GPIPSKW+GIC N D FHCN
Sbjct: 133 SSSIWKKARFGEGVIIGNLDTGVWPESKSFSEQGLGPIPSKWRGICDNGIDHTFHCNRKL 192
Query: 123 ---RYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGS 179
RYFN+ YA GPLNSSF S RD GHG+HTLS AGGN VA SVFG G+GTAKGGS
Sbjct: 193 IGARYFNKGYASVAGPLNSSFDSPRDNEGHGTHTLSTAGGNMVARVSVFGQGQGTAKGGS 252
Query: 180 PKARVAGYKACWDGMGG--CYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIGS 226
P ARVA YK CW +GG C+D DI+AAFD+AIHDGVD+LSVSL VAIGS
Sbjct: 253 PMARVAAYKVCWPPVGGEECFDADILAAFDLAIHDGVDVLSVSLGGSSSTFFKDSVAIGS 312
Query: 227 FHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISE 286
FHA + G+VVVCS GN G + T +N AP + V ASTMDR YVVLGN+ FK S
Sbjct: 313 FHAAKRGVVVVCSAGNSGPAEATAENLAPWHVTVAASTMDRQFPTYVVLGNDITFKGESL 372
Query: 287 RAKGLPSDKLFTFIR--------------------TLDPKKVKGKILVCL---NVRSVDE 323
A L + K + I+ TLDP K KGKI+VCL N R VD+
Sbjct: 373 SATKL-AHKFYPIIKATDAKLASARAEDAVLCQNGTLDPNKAKGKIVVCLRGINAR-VDK 430
Query: 324 GLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDG--YYNLFFTFTRHPVGYIK 381
G QA LAGA +VL N GN+ D HVLPAS I F DG +N + T+ PV YI
Sbjct: 431 GEQAFLAGAVGMVLANDKTTGNEIIADPHVLPASHINFTDGSAVFN-YINSTKFPVAYIT 489
Query: 382 RPTTEFGAKPAPYMAALSSKGPIHITPEIL---------------------------KRR 414
P T+ KPAP+MAA SSKGP + PEIL KRR
Sbjct: 490 HPKTQLDTKPAPFMAAFSSKGPNTMVPEILKPDITAPGVSVIAAYTEAQGPTNQVFDKRR 549
Query: 415 IPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTE 474
IPFNS+SGTSMS P++SGI GL + L+P WS AA++SAIMTTATT DN+ + +L+A+ +
Sbjct: 550 IPFNSVSGTSMSCPHVSGIVGLLRALYPTWSTAAIKSAIMTTATTLDNEVEPLLNATDGK 609
Query: 475 ATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNAI 534
ATPFSYGAGHVQPN AMDPGLVY +T++DYLNFLCALGYN+ IS+F T Y C K
Sbjct: 610 ATPFSYGAGHVQPNRAMDPGLVYDITIDDYLNFLCALGYNETQISVF-TEGPYKCRKK-F 667
Query: 535 ILVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAPKSLKFINVGE 594
L+N NYPSITVPKLSGS+TVTR +KNVGSPGTY A V+ P G++V++ P LKF NVGE
Sbjct: 668 SLLNLNYPSITVPKLSGSVTVTRTLKNVGSPGTYIAHVQNPYGITVSVKPSILKFKNVGE 727
Query: 595 EKSFKVNIKAKNASVTKDYVFGELIW 620
EKSFK+ KA T +Y FG+LIW
Sbjct: 728 EKSFKLTFKAMQGKATNNYAFGKLIW 753
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 620 | ||||||
| TAIR|locus:2168057 | 778 | SBT5.4 "AT5G59810" [Arabidopsi | 0.493 | 0.393 | 0.541 | 2.3e-181 | |
| UNIPROTKB|Q6H733 | 799 | P0026H03.20-1 "Putative subtil | 0.348 | 0.270 | 0.613 | 9.9e-154 | |
| TAIR|locus:2050215 | 772 | AIR3 "AT2G04160" [Arabidopsis | 0.348 | 0.279 | 0.678 | 1.1e-144 | |
| UNIPROTKB|Q8H4X8 | 762 | OJ1136_A10.113 "Putative subti | 0.340 | 0.276 | 0.515 | 2.8e-129 | |
| UNIPROTKB|Q0JK21 | 741 | Os01g0702300 "Os01g0702300 pro | 0.383 | 0.321 | 0.479 | 2.2e-125 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.462 | 0.379 | 0.431 | 8.2e-118 | |
| UNIPROTKB|Q0J050 | 769 | Os09g0530800 "Os09g0530800 pro | 0.446 | 0.360 | 0.450 | 1.3e-113 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.467 | 0.374 | 0.405 | 1.7e-109 | |
| TAIR|locus:2198656 | 769 | ATSBT5.2 "AT1G20160" [Arabidop | 0.438 | 0.353 | 0.458 | 6.4e-108 | |
| TAIR|locus:2037935 | 777 | SBT3.3 "AT1G32960" [Arabidopsi | 0.343 | 0.274 | 0.459 | 2.2e-105 |
| TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 864 (309.2 bits), Expect = 2.3e-181, Sum P(3) = 2.3e-181
Identities = 175/323 (54%), Positives = 218/323 (67%)
Query: 6 AIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIP 65
AIFYSY RHINGFAA L + AAE+AKHP VVSVF +K +KLHTTHSW F+ L +NG +
Sbjct: 84 AIFYSYKRHINGFAAILDENEAAEIAKHPDVVSVFPNKGRKLHTTHSWNFMLLAKNGVVH 143
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDK--DARFHCNR 123
+S+W KA YGED II NLDTGVW ESKSF DEG+G +P++WKG C D + + R
Sbjct: 144 KSSLWNKAGYGEDTIIANLDTGVWPESKSFSDEGYGAVPARWKGRCHKDVPCNRKLIGAR 203
Query: 124 YFNQDYAVHKG-PLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKA 182
YFN+ Y + G P N+S+ + RD +GHGSHTLS A GNFV GA+VFG G GTA GGSPKA
Sbjct: 204 YFNKGYLAYTGLPSNASYETCRDHDGHGSHTLSTAAGNFVPGANVFGIGNGTASGGSPKA 263
Query: 183 RVAGYKACWDGMGG--CYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIGSFHA 229
RVA YK CW + G C+D DI+AA + AI DGVD+LS S+ +AIGSFHA
Sbjct: 264 RVAAYKVCWPPVDGAECFDADILAAIEAAIEDGVDVLSASVGGDAGDYMSDGIAIGSFHA 323
Query: 230 VQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAK 289
V++G+ VVCS GN G T+ N AP I VGAS+MDR+ +V L N + FK S +K
Sbjct: 324 VKNGVTVVCSAGNSGPKSGTVSNVAPWVITVGASSMDREFQAFVELKNGQSFKGTS-LSK 382
Query: 290 GLPSDKLFTFIRTLDPKKVKGKI 312
LP +K+++ I D G +
Sbjct: 383 PLPEEKMYSLISAADANVANGNV 405
|
|
| UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 9.9e-154, Sum P(3) = 9.9e-154
Identities = 138/225 (61%), Positives = 164/225 (72%)
Query: 6 AIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIP 65
AIFYSYTRHINGFAA L A AA++A+ P VVSVF ++ KLHTT SW+FLGL G P
Sbjct: 91 AIFYSYTRHINGFAANLDAAAAAKIAEKPGVVSVFPNRGHKLHTTRSWQFLGLAGVGGAP 150
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNR-- 123
+ W+KAR+GED IIGNLDTGVW ES+SF D+G GPIPS W+G CQ +D F CNR
Sbjct: 151 TGAAWKKARFGEDTIIGNLDTGVWPESESFRDDGLGPIPSWWRGECQKGQDDAFSCNRKL 210
Query: 124 ----YFNQDYAVHKGPLNSSFYSA-RDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGG 178
+FN+ YA G LN+S + RD +GHG+HTLS AGG VAGASVFG+G GTA GG
Sbjct: 211 IGARFFNKGYASAVGNLNTSLFDTPRDTDGHGTHTLSTAGGAPVAGASVFGYGNGTASGG 270
Query: 179 SPKARVAGYKACWDGMGG--CYDCDIIAAFDMAIHDGVDMLSVSL 221
SP ARVA Y+ C+ + G C+D DI+AAFD AIHDGV +LSVSL
Sbjct: 271 SPMARVAAYRVCYTPVNGSECFDADILAAFDAAIHDGVHVLSVSL 315
|
|
| TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 801 (287.0 bits), Expect = 1.1e-144, Sum P(2) = 1.1e-144
Identities = 152/224 (67%), Positives = 173/224 (77%)
Query: 6 AIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIP 65
AIFYSYT+HINGFAA L +A E++KHP+VVSVF +K KLHTT SW+FLGLE N +P
Sbjct: 74 AIFYSYTKHINGFAAHLDHDLAYEISKHPEVVSVFPNKALKLHTTRSWDFLGLEHNSYVP 133
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNR-- 123
+SIW KAR+GED II NLDTGVW ESKSF DEG GPIPS+WKGICQN KDA FHCNR
Sbjct: 134 SSSIWRKARFGEDTIIANLDTGVWPESKSFRDEGLGPIPSRWKGICQNQKDATFHCNRKL 193
Query: 124 ----YFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGS 179
YFN+ YA G LNSSF S RD +GHGSHTLS A G+FV G S+FG G GTAKGGS
Sbjct: 194 IGARYFNKGYAAAVGHLNSSFDSPRDLDGHGSHTLSTAAGDFVPGVSIFGQGNGTAKGGS 253
Query: 180 PKARVAGYKACWDGMGG--CYDCDIIAAFDMAIHDGVDMLSVSL 221
P+ARVA YK CW + G CYD D++AAFD AIHDG D++SVSL
Sbjct: 254 PRARVAAYKVCWPPVKGNECYDADVLAAFDAAIHDGADVISVSL 297
|
|
| UNIPROTKB|Q8H4X8 OJ1136_A10.113 "Putative subtilisin-like serine protease AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 2.8e-129, Sum P(3) = 2.8e-129
Identities = 115/223 (51%), Positives = 155/223 (69%)
Query: 6 AIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIP 65
AI YSYT++INGFAA L + VA ++A+HP VV+V S KLHTT SW+F+ +E++G+I
Sbjct: 61 AILYSYTKNINGFAAHLEEEVATQIARHPDVVTVMASTMLKLHTTRSWDFMDMERDGQIL 120
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGF-GPIPSKWKGICQNDKDARFHCN-- 122
P+SIW+ R+G+D+II NLD+GVW ES SF DE G +P +WKG C + CN
Sbjct: 121 PDSIWKHGRFGQDVIIANLDSGVWPESNSFTDEEVVGEVPKRWKGSCSDTAKYGVSCNKK 180
Query: 123 ----RYFNQDYAV-HKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKG 177
RYFN+D + + G ++ ++ +RD GHG+HTLS AGG FV AS+FG+ GTAKG
Sbjct: 181 LIGARYFNKDMLLSNPGAVDGNW--SRDTEGHGTHTLSTAGGRFVPRASLFGYANGTAKG 238
Query: 178 GSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVS 220
G+P+ARVA YK CW G C D++A F+ AIHDG D++SVS
Sbjct: 239 GAPRARVAAYKVCWSGE--CAAADVLAGFEAAIHDGADVISVS 279
|
|
| UNIPROTKB|Q0JK21 Os01g0702300 "Os01g0702300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 2.2e-125, Sum P(3) = 2.2e-125
Identities = 128/267 (47%), Positives = 162/267 (60%)
Query: 34 PKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIPPNSIW-EKARYGEDIIIGNLDTGVWRES 92
P V++V K+HTT SW+FL LE+NG W + A+YG D IIGN+DTGVW ES
Sbjct: 51 PGVLAVIPDVLHKVHTTRSWDFLELERNGAA--TGAWKDAAKYGVDAIIGNVDTGVWPES 108
Query: 93 KSFGDEGFGPIPSKWKGICQNDKDARFHCNR------YFNQDYAVH-----KGPLNSS-F 140
SF D+G+ +PS+W+G C D F CN +FN + K P ++
Sbjct: 109 ASFKDDGYS-VPSRWRGKCITGNDTTFKCNNKLIGAGFFNLGFLASGLLQGKPPSQAAEL 167
Query: 141 YSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDC 200
Y+ RD GHG+HTLS AGG FV ASVFG GKGTAKGGSP ARVA YKAC+ GC
Sbjct: 168 YTPRDYIGHGTHTLSTAGGGFVPDASVFGHGKGTAKGGSPLARVAAYKACY--AEGCSSS 225
Query: 201 DIIAAFDMAIHDGVDMLSVSL-----------VAIGSFHAVQHGIVVVCSDGNEGLVDVT 249
DI+AA A+ DGV++LS+S+ +AIG+F+AVQ G++VVCS N G +
Sbjct: 226 DILAAMVTAVEDGVNVLSLSVGGPADDYLSDPIAIGAFYAVQKGVIVVCSASNSGPQPGS 285
Query: 250 LQNAAPRQIVVGASTMDRDLSNYVVLG 276
+ N AP + VGASTMDRD YV G
Sbjct: 286 VTNVAPWILTVGASTMDRDFPAYVTFG 312
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 8.2e-118, Sum P(3) = 8.2e-118
Identities = 136/315 (43%), Positives = 185/315 (58%)
Query: 7 IFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIPP 66
+ Y+Y I+GF+ +L A + P V+SV +LHTT + FLGL+++
Sbjct: 65 LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTA--- 121
Query: 67 NSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFH-CNR-- 123
++ +A D+++G LDTGVW ESKS+ DEGFGPIPS WKG C+ + CNR
Sbjct: 122 -DLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKL 180
Query: 124 ----YFNQDYAVHKGPLNSS--FYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKG 177
+F + Y GP++ S S RD +GHG+HT S A G+ V GAS+ G+ GTA+G
Sbjct: 181 IGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARG 240
Query: 178 GSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIGS 226
+P+ARVA YK CW +GGC+ DI+AA D AI D V++LS+SL VAIG+
Sbjct: 241 MAPRARVAVYKVCW--LGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGA 298
Query: 227 FHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISE 286
F A++ GI+V CS GN G +L N AP VGA T+DRD +LGN K F +S
Sbjct: 299 FAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSL 358
Query: 287 -RAKGLPSDKLFTFI 300
+ + LP DKL FI
Sbjct: 359 FKGEALP-DKLLPFI 372
|
|
| UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 1.3e-113, Sum P(3) = 1.3e-113
Identities = 137/304 (45%), Positives = 177/304 (58%)
Query: 2 ALAHAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQN 61
A AI YSY +GFAA L AA ++ P VV V ++ LHTT SW+F+G+ N
Sbjct: 60 AAMDAILYSYRHGFSGFAAVLTGGQAARLSDWPGVVRVVRNRVLDLHTTRSWDFMGV--N 117
Query: 62 GRIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGIC-QNDKDARFH 120
I ++R+GED IIG LDTG+W ES SF D+G G +P +WKG C +K +
Sbjct: 118 PSPSGGGILLESRFGEDSIIGVLDTGIWPESASFRDDGIGEVPRRWKGQCVAGEKFNASN 177
Query: 121 CNR------YFNQDYAVHKGPLNSS----FYSARDKNGHGSHTLSRAGGNFVAGASVFGF 170
CNR ++ + Y G +N+S F SARD GHG+HT S A G VA AS G
Sbjct: 178 CNRKIIGAKWYVKGYEAEYGKMNTSDIYEFMSARDAVGHGTHTASTAAGALVANASFRGL 237
Query: 171 GKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--------- 221
KG A+GG+ +AR+A YK CW G C DI+AAFD AIHDGVD++SVSL
Sbjct: 238 AKGVARGGAQRARLAVYKVCW-ATGDCTAADILAAFDDAIHDGVDVISVSLGQAPPLPAY 296
Query: 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGN 277
++IGSFHAV G+VVVCS GN G T+ N+AP + V A T+DR ++LGN
Sbjct: 297 VDDVLSIGSFHAVAKGVVVVCSAGNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGN 356
Query: 278 NKRF 281
N +
Sbjct: 357 NSTY 360
|
|
| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 1.7e-109, Sum P(3) = 1.7e-109
Identities = 128/316 (40%), Positives = 178/316 (56%)
Query: 6 AIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIP 65
+I ++Y +GF+A+L A+++ HP V+SV + + LHTT S EFLGL +
Sbjct: 61 SIIHTYDTVFHGFSARLTSQDASQLLDHPHVISVIPEQVRHLHTTRSPEFLGLRSTDKA- 119
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKD-ARFHCNR- 123
+ E++ +G D++IG +DTGVW E SF D G GP+P KWKG C +D CNR
Sbjct: 120 --GLLEESDFGSDLVIGVIDTGVWPERPSFDDRGLGPVPIKWKGQCIASQDFPESACNRK 177
Query: 124 -----YFNQDYAVHKGPLNSS--FYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAK 176
+F Y G +N + F S RD +GHG+HT S + G +V AS G+ G A
Sbjct: 178 LVGARFFCGGYEATNGKMNETTEFRSPRDSDGHGTHTASISAGRYVFPASTLGYAHGVAA 237
Query: 177 GGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIG 225
G +PKAR+A YK CW+ GCYD DI+AAFD A+ DGVD++S+S+ +AIG
Sbjct: 238 GMAPKARLAAYKVCWNS--GCYDSDILAAFDTAVADGVDVISLSVGGVVVPYYLDAIAIG 295
Query: 226 SFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLIS 285
+F A+ GI V S GN G +T+ N AP VGA T+DRD V LGN K +S
Sbjct: 296 AFGAIDRGIFVSASAGNGGPGALTVTNVAPWMTTVGAGTIDRDFPANVKLGNGKMISGVS 355
Query: 286 ERA-KGLPSDKLFTFI 300
GL +++ +
Sbjct: 356 VYGGPGLDPGRMYPLV 371
|
|
| TAIR|locus:2198656 ATSBT5.2 "AT1G20160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 6.4e-108, Sum P(3) = 6.4e-108
Identities = 137/299 (45%), Positives = 181/299 (60%)
Query: 4 AHAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGR 63
A+ + ++Y +GFAA+L A +AK P VVSVF +LHTTHSW+FL + + +
Sbjct: 64 ANDLLHTYKHGFSGFAARLTAEEAKVIAKKPGVVSVFPDPHFQLHTTHSWDFLKYQTSVK 123
Query: 64 I---PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARF- 119
+ PP+S + + Y D I+G LDTG+W ES+SF D+ GPIPS+WKG C KD +
Sbjct: 124 VDSGPPSSASDGS-Y--DSIVGILDTGIWPESESFNDKDMGPIPSRWKGTCMEAKDFKSS 180
Query: 120 HCNR-YFNQDYAVHKGPLNSS-FYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKG 177
+CNR Y +K P + S +Y+ RD GHGSH S G+ V AS +G GTAKG
Sbjct: 181 NCNRKIIGARY--YKNPDDDSEYYTTRDVIGHGSHVSSTIAGSAVENASYYGVASGTAKG 238
Query: 178 GSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--------------VA 223
GS AR+A YK C GGC I+AAFD AI DGVD+LS+SL +A
Sbjct: 239 GSQNARIAMYKVC--NPGGCTGSSILAAFDDAIADGVDVLSLSLGAPAYARIDLNTDPIA 296
Query: 224 IGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFK 282
IG+FHAV+ GI+V+CS GN+G T+ N AP + V A+T+DRD + VVLG NK K
Sbjct: 297 IGAFHAVEQGILVICSAGNDGPDGGTVTNTAPWIMTVAANTIDRDFESDVVLGGNKVIK 355
|
|
| TAIR|locus:2037935 SBT3.3 "AT1G32960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 2.2e-105, Sum P(4) = 2.2e-105
Identities = 107/233 (45%), Positives = 143/233 (61%)
Query: 6 AIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIP 65
++ YSY +GFAAKL + A ++A P+VV V +L TT +WE+LGL
Sbjct: 69 SMVYSYRHGFSGFAAKLTKSQAKKIADLPEVVHVIPDGFHELATTRTWEYLGLSSAN--- 125
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARF-HCNR- 123
P ++ G+ +IIG +DTGVW ES+SF D G GPIP KWKG C++ ++ R CNR
Sbjct: 126 PKNLLNDTNMGDQVIIGVIDTGVWPESESFNDNGVGPIPRKWKGGCESGENFRSTDCNRK 185
Query: 124 -----YF-NQDYAVHKGPLNSS----FYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKG 173
YF N A +KG N++ + SARD +GHG+H S AGG+FV S G G
Sbjct: 186 LIGAKYFINGFLAENKG-FNTTESRDYISARDFDGHGTHVASIAGGSFVPNVSYKGLAGG 244
Query: 174 TAKGGSPKARVAGYKACW--DGMGG--CYDCDIIAAFDMAIHDGVDMLSVSLV 222
T +GG+P+AR+A YKACW + + G C D DI+ A D AIHDGVD+LS+SLV
Sbjct: 245 TLRGGAPRARIAMYKACWFHEELKGVTCSDSDIMKAIDEAIHDGVDVLSISLV 297
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 620 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-85 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 6e-18 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 4e-15 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 7e-13 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 3e-11 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 8e-11 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 1e-10 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 1e-08 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-07 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 9e-07 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-06 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 3e-06 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 3e-06 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 8e-06 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-05 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-05 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 3e-05 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 8e-05 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 8e-05 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 3e-04 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 5e-04 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 5e-04 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 6e-04 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 7e-04 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 0.002 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 0.003 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 0.003 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 268 bits (688), Expect = 2e-85
Identities = 107/240 (44%), Positives = 129/240 (53%), Gaps = 23/240 (9%)
Query: 45 KKLHTTHSWEFLGLEQNGRIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIP 104
+LHTT S +FLGL S+ A GE IIIG LDTG+W E SF D G GP P
Sbjct: 1 YQLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYP 57
Query: 105 SKWKGICQ-NDKDARFHCN------RYFNQDY-AVHKGPLNSSFYSARDKNGHGSHTLSR 156
W G C + F CN RYF+ Y A + + S RD +GHG+HT S
Sbjct: 58 HTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTAST 117
Query: 157 AGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDM 216
A GN V ASV GF GTA G +P+AR+A YK CW GGC+ DI+AA D AI DGVD+
Sbjct: 118 AAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD-GGCFGSDILAAIDQAIADGVDV 176
Query: 217 LSVSL-----------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTM 265
+S S+ +AI HAV+ GI V S GN G T+ N AP V AST+
Sbjct: 177 ISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 6e-18
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 395 MAALSSKGPIHITPEILKRRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIM 454
+AA + +G R F ISGTSM+ P+++G+A L K HPDWSPAA++SA+M
Sbjct: 248 LAAWTPEGA----DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALM 303
Query: 455 TTAT 458
TTA
Sbjct: 304 TTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-15
Identities = 66/204 (32%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGP 135
G+ + + +DTG+ G GF K KG D + Y D + P
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGGPGFPN--DKVKG----GYDFVD--DDYDPMDTRPYPSP 52
Query: 136 LNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMG 195
L + SA D GHG+H GN G GT KG +PKA + YK G G
Sbjct: 53 LGDA--SAGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPKADLYAYKVLGPG-G 101
Query: 196 GCYDCDIIAAFDMAIHDGVDMLSVSL------------VAIGSFHAVQHGIVVVCSDGNE 243
IIAA + A+ DG+D++++SL +AI + AV+ G+VVV + GN
Sbjct: 102 SGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAINN--AVKAGVVVVAAAGNS 159
Query: 244 GLVDVTLQN--AAPRQIVVGASTM 265
G T+ + AP I VGAST+
Sbjct: 160 GPAPYTIGSPATAPSAITVGASTV 183
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 7e-13
Identities = 37/110 (33%), Positives = 45/110 (40%), Gaps = 16/110 (14%)
Query: 272 YVVLGNNKRFK---LISERAKGLPSDKLFTFI----------RTLDPKKVKGKILVC--- 315
V LGN K L K P +LDP KVKGKI++C
Sbjct: 1 VVTLGNGKTIVGQSLYPGNLKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRG 60
Query: 316 LNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGY 365
N V +G AG A ++L N P G D D HVLPA + + DG
Sbjct: 61 GNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGT 110
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 48/219 (21%), Positives = 74/219 (33%), Gaps = 60/219 (27%)
Query: 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGP 135
G+ I + LDTG+ F R+ + V+
Sbjct: 1 GKGITVAVLDTGIDAPHPDFDG----------------------RIIRFADFVNTVNGRT 38
Query: 136 LNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMG 195
+ D NGHG+H G+ A G KG +P A + G K D G
Sbjct: 39 ------TPYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKV-LDDSG 84
Query: 196 GCYDCDIIAAFDMAI----HDGVDMLSVSLVAIGSFH---------------AVQHGIVV 236
+ DIIA D + + ++++SL G+ GIVV
Sbjct: 85 SGSESDIIAGIDWVVENNEKYNIRVVNLSL---GAPPDPSYGEDPLCQAVERLWDAGIVV 141
Query: 237 VCSDGNEGLVD--VTLQNAAPRQIVVGASTMDRDLSNYV 273
V + GN G +T +P+ I VGA + + +
Sbjct: 142 VVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPHDDGI 180
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 8e-11
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 419 SISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPF 478
+SGTSM+ P+++G A L K HPDWSPA +++A+M TA + D+
Sbjct: 231 RMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAK-------PLYDSDGVVYPVS 283
Query: 479 SYGAGHVQPNLA 490
GAG V A
Sbjct: 284 RQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 45/201 (22%), Positives = 66/201 (32%), Gaps = 50/201 (24%)
Query: 79 IIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNS 138
+ + +DTGV + G +
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGG-------------------------NDDDDNEN 35
Query: 139 SFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCY 198
D NGHG+H + G V G +P A++ K G
Sbjct: 36 GPTDPDDGNGHGTHVAGIIAASANNGGGV---------GVAPGAKLIPVKVLDGD-GSGS 85
Query: 199 DCDIIAAFDMAIHD-GVDMLSVSLVAIGS------FHAV-----QHGIVVVCSDGNEGLV 246
DI AA D A D G D++++SL GS A+ + G++VV + GN+G
Sbjct: 86 SSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALAKLGVLVVAAAGNDGPD 145
Query: 247 DVTLQN---AAPRQIVVGAST 264
T A+P I VGA
Sbjct: 146 GGTNIGYPAASPNVIAVGAVD 166
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-08
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 2 ALAHAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLH 48
A +I YSY NGFAAKL + A ++ KHP V V + +LH
Sbjct: 30 AAGASILYSYKHGFNGFAAKLTEEEAEKLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 47/143 (32%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 143 ARDKNGHGSHTLSRAGGNFVAG--ASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDC 200
A D NGHG+H VAG A+ G G A G +PKA++ K G
Sbjct: 64 AMDDNGHGTH---------VAGIIAAATNNGTGVA-GVAPKAKIMPVKVLDANGSGSLA- 112
Query: 201 DIIAAFDMAIHDGVDMLSVSLVA-IGSF---HAVQ----HGIVVVCSDGNEGLVDVTLQN 252
DI A G ++++SL +GS A+ G+VVV + GNEG+ V+
Sbjct: 113 DIANGIRYAADKGAKVINLSLGGGLGSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPA 172
Query: 253 AAPRQIVVGASTMDR---DLSNY 272
A P I V A+ D SNY
Sbjct: 173 AYPGAIAVAATDQDDKRASFSNY 195
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 9e-07
Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 32/157 (20%)
Query: 137 NSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGG 196
+ D NGHG+H G+ G +P A++ K G GG
Sbjct: 35 DPDPTPDDDNNGHGTHVAGIIAAGDNNGSGGVGV--------APNAKLESVKVL-PGSGG 85
Query: 197 CYDCDIIAAFDMAIHDGVDMLSVSLVAIGSFH-----------------AVQHGIVVVCS 239
D ++ A + A + + V +++G A G + V +
Sbjct: 86 -TDSELAGAIEWAAERP-NDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVA 143
Query: 240 DGNEGLVDVTLQNAAPRQ----IVVGASTMDRDLSNY 272
GN G + P I VGA T + ++++
Sbjct: 144 AGNGGDYADNNPVSDPASANNIITVGAVTENGTIADF 180
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 26/150 (17%)
Query: 136 LNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMG 195
+D NGHG+H AG + A G G G +P+A + K D
Sbjct: 29 TGDDNNDYQDGNGHGTHV---AG---IIAALDNGVG---VVGVAPEADLYAVKVLNDDGS 79
Query: 196 GCYDCDIIAAFDMAIHDGVDMLSVSLVAIGS------FH-----AVQHGIVVVCSDGNEG 244
G Y DIIA + AI +G+D++++SL G A GI+VV + GN G
Sbjct: 80 GTYS-DIIAGIEWAIENGMDIINMSL---GGPSDSPALREAIKKAYAAGILVVAAAGNSG 135
Query: 245 LVDVTLQNAA--PRQIVVGASTMDRDLSNY 272
D + A P I VGA + + +++
Sbjct: 136 NGDSSYDYPAKYPSVIAVGAVDSNNNRASF 165
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTA 457
+ +SGTSM+ P+++G+A L HPD SP ++ A+ TA
Sbjct: 213 YTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 38/123 (30%)
Query: 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIA 204
DK GHG+ VAG G KG +P + Y+ + G II
Sbjct: 51 DKLGHGTA---------VAGQIA---ANGNIKGVAPGIGIVSYRV-FGSCGSAESSWIIK 97
Query: 205 AFDMAIHDGVDMLSVSLVAIGSF----------------------HAVQHGIVVVCSDGN 242
A A DGVD++++SL G + +A G +VV + GN
Sbjct: 98 AIIDAADDGVDVINLSL---GGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGN 154
Query: 243 EGL 245
+GL
Sbjct: 155 DGL 157
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
++S SGTSM+ P ++G A L +P +P +++ ++TTAT
Sbjct: 213 YDSHSGTSMAAPLVAGAAALLLSANPSLTPETLRALLVTTATD 255
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 38/134 (28%), Positives = 52/134 (38%), Gaps = 23/134 (17%)
Query: 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIA 204
D GHG+H + G G G A P+A + K D GG IIA
Sbjct: 41 DAGGHGTHVSGT-----IGGGGAKGVYIGVA----PEADLLHGKVLDD--GGGSLSQIIA 89
Query: 205 AFDMAIHDGVDMLSVSL----VAIGSFHAV------QHGIVVVCSDGNEGLVDVTLQNAA 254
+ A+ D++S+SL + Q G + V S GNEG +A
Sbjct: 90 GMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSA 149
Query: 255 PRQIVVGASTMDRD 268
+ VGA +DRD
Sbjct: 150 YAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 30/115 (26%)
Query: 145 DKNGHGSHTLSRAGGNFVAG-----ASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYD 199
D GHG+H VAG + +GF G +P+A + Y+ + G +
Sbjct: 66 DCQGHGTH---------VAGIIAANPNAYGF-----TGVAPEATLGAYRV-FGCSGSTTE 110
Query: 200 CDIIAAFDMAIHDGVDMLSVSL----------VAIGSFHAVQHGIVVVCSDGNEG 244
IIAAF A DG D+++ SL A+ + V G+VV + GN+G
Sbjct: 111 DTIIAAFLRAYEDGADVITASLGGPSGWSEDPWAVVASRIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 41/146 (28%), Positives = 56/146 (38%), Gaps = 29/146 (19%)
Query: 145 DKNGHGSHTLSRAGGNFVAG--ASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDI 202
D NGHG+H VAG +V G G A G + ++ K G D
Sbjct: 61 DDNGHGTH---------VAGIIGAVGNNGIGIA-GVAWNVKIMPLKFL-GADGSGTTSDA 109
Query: 203 IAAFDMAIHDGVDMLSVSLVAIGSFH--------AVQHGIVVVCSDGNEGL-VDVTLQNA 253
I A D A+ G +++ S G A+ GI+ V + GN+G D T
Sbjct: 110 IKAIDYAVDMGAKIINNSWGGGGPSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYP 169
Query: 254 A----PRQIVVGASTMDRDL---SNY 272
A I V A+ + L SNY
Sbjct: 170 ASYDLDNIISVAATDSNDALASFSNY 195
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 419 SISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+SGTSM+ P+++G A L L+P+ + A ++ AI+++A
Sbjct: 220 YMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 36/199 (18%)
Query: 69 IWEKARY-GEDIIIGNLDTGVWRESKSF-GDEGFGPIPSKWKGICQNDKDARFHC-NRYF 125
+W+K Y GE +++ +D+GV +F D+ +K+ + K +Y+
Sbjct: 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDD---DSKAKYSEEFEAKKKKAGIGYGKYY 58
Query: 126 NQDYAVHKGPL-------NSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGG 178
N K P N D + HG H GN + G KG A
Sbjct: 59 N-----EKVPFAYNYADNNDDILDEDDGSSHGMHVAGIVAGNGDEEDNGEGI-KGVA--- 109
Query: 179 SPKARVAGYK-ACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSLVAIGSF---------- 227
P+A++ K G YD A + A+ G D++++SL + F
Sbjct: 110 -PEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQA 168
Query: 228 --HAVQHGIVVVCSDGNEG 244
A + G+VVV + GN+G
Sbjct: 169 IKRAREAGVVVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
++SGTSM+ P+++G+A L PD SPA V++ ++ AT
Sbjct: 213 TATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLAT 254
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 16/40 (40%), Positives = 30/40 (75%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTT 456
+ ++SGTSM+ P ++G+A L +PD +PA V++A+++T
Sbjct: 202 YATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+ +SGTSM+ P+++G+A L P S + V+ A+ TA
Sbjct: 217 YAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADD 258
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 417 FNSISGTSMSGPYISGIAGLPK-ILHPDWSPAAVQSAIMTTATTQ---DNKKQQILDASF 472
+ +SGTSM+ PY++G A L H SPA ++ + +TA D A
Sbjct: 224 YAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGT-----SALP 278
Query: 473 TEATPFSYGAGHVQ 486
A GAG V
Sbjct: 279 DLAPVAQQGAGLVN 292
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 7e-04
Identities = 42/153 (27%), Positives = 56/153 (36%), Gaps = 43/153 (28%)
Query: 142 SARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCD 201
D NGHG+H AG G +G K KA + K D G
Sbjct: 58 PDSDCNGHGTHV---AG---TVGGKTYGVAK--------KANLVAVKVL-DCNGSGTLSG 102
Query: 202 IIAAFDMAIHDGVDML--SVSLVAIGSF----------HAVQHGIVVVCSDGNEGLVDVT 249
IIA + +D +V+ +++G AV G+VVV + GN
Sbjct: 103 IIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVAAAVNAGVVVVVAAGNSN----- 157
Query: 250 LQNA-------APRQIVVGASTMDRDL---SNY 272
Q+A AP I VGA+ D SNY
Sbjct: 158 -QDACNYSPASAPEAITVGATDSDDARASFSNY 189
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 421 SGTSMSGPYISGIAGLPKIL--HPDWSPAAVQSAIMTTAT 458
SGTSM+ P++SG L +L +P +P V+ + TAT
Sbjct: 227 SGTSMATPHVSGAIAL--LLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 421 SGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTT 456
SGTSM+ P+++G+A L P+ + A V+ A+ T
Sbjct: 194 SGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 421 SGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSY 480
SGTS + P++SG A L + PD + A V+ I TA D
Sbjct: 223 SGTSFAAPFVSGTAALVRSRFPDLTAAQVRRRIEATA-----------DHPARGGRDDYV 271
Query: 481 GAGHVQPNLA 490
G G V P A
Sbjct: 272 GYGVVDPVAA 281
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 620 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 99.96 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.96 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 99.95 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.86 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.74 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.58 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 98.97 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 98.81 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.36 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.2 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.11 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.08 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 97.96 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 97.94 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 97.86 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 97.86 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 97.81 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 97.8 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 97.79 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 97.78 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 97.75 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 97.66 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.53 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.43 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 97.37 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.26 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 97.25 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.2 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 96.65 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 96.04 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 94.6 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 93.95 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 93.18 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 92.62 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 92.09 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 92.03 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 91.11 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 89.03 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 88.56 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 87.21 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 86.17 | |
| PF07718 | 140 | Coatamer_beta_C: Coatomer beta C-terminal region; | 85.6 | |
| PF00635 | 109 | Motile_Sperm: MSP (Major sperm protein) domain; In | 85.3 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 85.26 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 85.18 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 80.81 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=405.86 Aligned_cols=216 Identities=50% Similarity=0.790 Sum_probs=177.3
Q ss_pred eeeccCCCccccCcccCCCCCCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCC-CCcccCc
Q 042484 45 KKLHTTHSWEFLGLEQNGRIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKD-ARFHCNR 123 (620)
Q Consensus 45 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~-~~~~~n~ 123 (620)
++++++++++|++++..- ...+|..+.+|+||+|||||||||++||+|.+.+..+.+..|.+.|..+.. ....||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCC---CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 468899999999998542 112577799999999999999999999999998888899999999987766 4445666
Q ss_pred ------cccccc-cccCCCCCCCCCCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCC
Q 042484 124 ------YFNQDY-AVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGG 196 (620)
Q Consensus 124 ------~~~~~~-~~~~~~~~~~~~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~ 196 (620)
+|..++ .......+.+..++.|..||||||||||||+...+..+.|...+.+.||||+|+|+++|+++.. +.
T Consensus 78 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~-~~ 156 (307)
T cd04852 78 KLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD-GG 156 (307)
T ss_pred eEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCC-CC
Confidence 222222 1100112334667889999999999999999877666666667789999999999999999985 56
Q ss_pred CCHHHHHHHHHHHHhCCCcEEeecH-----------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccc
Q 042484 197 CYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGAST 264 (620)
Q Consensus 197 ~~~~~i~~ai~~a~~~gvdVIn~Sl-----------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~ 264 (620)
+..+++++||++|++++++|||||| +..+...+.++|+++|+||||+|+...+.++..||+++||+++
T Consensus 157 ~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~ 235 (307)
T cd04852 157 CFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST 235 (307)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc
Confidence 8999999999999999999999999 4556677889999999999999988888888899999999965
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=403.76 Aligned_cols=275 Identities=17% Similarity=0.110 Sum_probs=189.7
Q ss_pred ccccc--cCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccc--cccccCCCCCCCCCC
Q 042484 67 NSIWE--KARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQ--DYAVHKGPLNSSFYS 142 (620)
Q Consensus 67 ~~~~~--~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~--~~~~~~~~~~~~~~~ 142 (620)
.++|+ .+.+|+||+|||||||||++||+|.+.-.. -+....|+...+.+ -|.+..+ +| .+-....+
T Consensus 304 ~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~-n~~el~GrdgiDdD----~nG~vdd~~G~-----nfVd~~~~ 373 (639)
T PTZ00262 304 DETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDV-NVKELHGRKGIDDD----NNGNVDDEYGA-----NFVNNDGG 373 (639)
T ss_pred hHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccc-ccccccCccccccc----cCCcccccccc-----cccCCCCC
Confidence 45665 456899999999999999999999864110 01111111100000 0001111 11 11122345
Q ss_pred CCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-
Q 042484 143 ARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL- 221 (620)
Q Consensus 143 ~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl- 221 (620)
|.|..||||||||||||...+ ...+.||||+|+|+++|+++.. |.+..+++++||+||++.|++||||||
T Consensus 374 P~D~~GHGTHVAGIIAA~gnN--------~~Gi~GVAP~AkLi~vKVld~~-G~G~~sdI~~AI~yA~~~GA~VINmSlG 444 (639)
T PTZ00262 374 PMDDNYHGTHVSGIISAIGNN--------NIGIVGVDKRSKLIICKALDSH-KLGRLGDMFKCFDYCISREAHMINGSFS 444 (639)
T ss_pred CCCCCCcchHHHHHHhccccC--------CCceeeeecccccceEEEecCC-CCccHHHHHHHHHHHHHCCCCEEEeccc
Confidence 789999999999999987532 3458899999999999999887 778999999999999999999999999
Q ss_pred -------HHHHHHHHHhcCcEEEEecCCCCCCCCc--------------cCC----CCCceEEecccccCCcccceEEeC
Q 042484 222 -------VAIGSFHAVQHGIVVVCSDGNEGLVDVT--------------LQN----AAPRQIVVGASTMDRDLSNYVVLG 276 (620)
Q Consensus 222 -------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t--------------~~~----~ap~vitVga~~~~~~~~~~~~~g 276 (620)
+..++.+|.++|++||+||||+|+.... .+. ..|.||+|||+..+..-. ..+
T Consensus 445 ~~~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~~~--~s~- 521 (639)
T PTZ00262 445 FDEYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKNNQ--YSL- 521 (639)
T ss_pred cCCccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCCCc--ccc-
Confidence 5667778899999999999999854211 111 136789998865332100 000
Q ss_pred CCeEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccE
Q 042484 277 NNKRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPA 356 (620)
Q Consensus 277 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~ 356 (620)
T Consensus 522 -------------------------------------------------------------------------------- 521 (639)
T PTZ00262 522 -------------------------------------------------------------------------------- 521 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchh
Q 042484 357 SVITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSG 427 (620)
Q Consensus 357 ~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAa 427 (620)
+.||.+|. .++||+| +++.|..++||||||
T Consensus 522 ---------------------------------------s~~Snyg~--~~VDIaAPG~dI~St~p~g~Y~~~SGTSmAA 560 (639)
T PTZ00262 522 ---------------------------------------SPNSFYSA--KYCQLAAPGTNIYSTFPKNSYRKLNGTSMAA 560 (639)
T ss_pred ---------------------------------------cccccCCC--CcceEEeCCCCeeeccCCCceeecCCCchhH
Confidence 00000000 0011111 356899999999999
Q ss_pred hhhhhhhhhhcccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceec-ccccCccccCCCceee
Q 042484 428 PYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYG-AGHVQPNLAMDPGLVY 497 (620)
Q Consensus 428 P~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G-aG~vn~~~A~~~~lv~ 497 (620)
|||||+||||++++|+|+++||+++|++||.++.. .+..+| .|+||+++|++..+-+
T Consensus 561 P~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~-------------~~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 561 PHVAAIASLILSINPSLSYEEVIRILKESIVQLPS-------------LKNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCC-------------CCCccccCcEEcHHHHHHHHHhc
Confidence 99999999999999999999999999999987532 112233 3899999999865543
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=374.03 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=178.0
Q ss_pred cccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCC
Q 042484 70 WEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGH 149 (620)
Q Consensus 70 ~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gH 149 (620)
|+++++|+||+|||||||||.+||+|.+.. . .. +| .......|+.||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~------------~-~~------------~~--------~~~~~~~d~~gH 47 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK------------E-RT------------NW--------TNEKTLDDGLGH 47 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc------------c-cc------------cc--------CCCCCCCCCCCc
Confidence 889999999999999999999999997410 0 00 01 001234577899
Q ss_pred hhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH--------
Q 042484 150 GSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL-------- 221 (620)
Q Consensus 150 GTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl-------- 221 (620)
||||||||+|+. ....||||+|+|+.+|++.+. +.+..+.++++|++|++.++|||||||
T Consensus 48 GT~VAGiIa~~~-----------~~~~GvAp~a~l~~~~v~~~~-~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~~~~~ 115 (255)
T cd07479 48 GTFVAGVIASSR-----------EQCLGFAPDAEIYIFRVFTNN-QVSYTSWFLDAFNYAILTKIDVLNLSIGGPDFMDK 115 (255)
T ss_pred HHHHHHHHHccC-----------CCceeECCCCEEEEEEeecCC-CCchHHHHHHHHHhhhhcCCCEEEeeccCCCCCCc
Confidence 999999999874 236899999999999999887 567788899999999999999999999
Q ss_pred -HHHHHHHHHhcCcEEEEecCCCCCCCCccCCC--CCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceee
Q 042484 222 -VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNA--APRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFT 298 (620)
Q Consensus 222 -~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~--ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 298 (620)
+..+...+.++|++||+||||+|+...+..+| .+++|+|||...+
T Consensus 116 ~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~-------------------------------- 163 (255)
T cd07479 116 PFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD-------------------------------- 163 (255)
T ss_pred HHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC--------------------------------
Confidence 33456667789999999999999866665444 5789999985422
Q ss_pred EEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEE
Q 042484 299 FIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVG 378 (620)
Q Consensus 299 ~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 378 (620)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCceeecCCCCCceeeccCCCCC---------CCCCceee---------cCCCcEEeccccchhhhhhhhhhhhccc
Q 042484 379 YIKRPTTEFGAKPAPYMAALSSKGPI---------HITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKIL 440 (620)
Q Consensus 379 ~i~~~~~~~~~~~~~~~a~FSS~GP~---------~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~ 440 (620)
+.++.||++||+ ++||||+| ..+.|..++|||||||||||++|||+|+
T Consensus 164 --------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~~~~~~sGTS~AaP~VaG~aAll~s~ 229 (255)
T cd07479 164 --------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKGGCRALSGTSVASPVVAGAVALLLST 229 (255)
T ss_pred --------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCCCeEEeccHHHHHHHHHHHHHHHHHh
Confidence 223456777653 35788877 3467999999999999999999999999
Q ss_pred CC----CCCHHHHHHHHHcccccC
Q 042484 441 HP----DWSPAAVQSAIMTTATTQ 460 (620)
Q Consensus 441 ~P----~~sp~~ik~~L~~TA~~~ 460 (620)
+| .++|++||++|++||+++
T Consensus 230 ~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 230 VPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred CccccCCCCHHHHHHHHHhhcccC
Confidence 99 799999999999999876
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=376.31 Aligned_cols=247 Identities=21% Similarity=0.227 Sum_probs=183.3
Q ss_pred CCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhh
Q 042484 73 ARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSH 152 (620)
Q Consensus 73 ~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTH 152 (620)
+++|+||+|||||||||.+||+|.+..-..+ .+..... .......|..+||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l----~~~~~~~-----------------------~~~~~~~d~~gHGT~ 53 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDL----PGNVNVL-----------------------GDLDGGSGGGDEGRA 53 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCC----Ccceeec-----------------------cccCCCCCCCchHHH
Confidence 5789999999999999999986543111111 1111000 002234578899999
Q ss_pred hhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-----------
Q 042484 153 TLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----------- 221 (620)
Q Consensus 153 VAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl----------- 221 (620)
|||||+ ||||+|+|+.+|+. ...+++++||+||++.|++||||||
T Consensus 54 vAgii~------------------GvAP~a~l~~~~~~------~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 109 (275)
T cd05562 54 MLEIIH------------------DIAPGAELAFHTAG------GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDG 109 (275)
T ss_pred HHHHHh------------------ccCCCCEEEEEecC------CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCC
Confidence 999995 89999999998863 3478999999999999999999999
Q ss_pred -HHHHHHHHHhc-CcEEEEecCCCCCCCCc-cCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceee
Q 042484 222 -VAIGSFHAVQH-GIVVVCSDGNEGLVDVT-LQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFT 298 (620)
Q Consensus 222 -~~~~~~~a~~~-Gv~vV~AAGN~G~~~~t-~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 298 (620)
+..+..++.++ |++||+||||+|+.... .+...|++|+|||++.+.........+.
T Consensus 110 ~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~--------------------- 168 (275)
T cd05562 110 PIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAP--------------------- 168 (275)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccccc---------------------
Confidence 34556667776 99999999999974322 2345799999999764432100000000
Q ss_pred EEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEE
Q 042484 299 FIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVG 378 (620)
Q Consensus 299 ~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 378 (620)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCceeecCCCCCceeeccCCCCC---CCCCceeec----------CCCcEEeccccchhhhhhhhhhhhcccCCCCC
Q 042484 379 YIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKR----------RIPFNSISGTSMSGPYISGIAGLPKILHPDWS 445 (620)
Q Consensus 379 ~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~----------~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~s 445 (620)
.......+.||+|||+ ..||||+|+ ++.|..++|||||||||||++|||+|++|+|+
T Consensus 169 ----------~~~~s~~~~~~~~~p~~~~~~~~di~Apgg~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt 238 (275)
T cd05562 169 ----------GGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDGDGDGPPNFFGTSAAAPHAAGVAALVLSANPGLT 238 (275)
T ss_pred ----------CCCcccccCCcccCcCCCCCcCCeEEcCCcccccCCCcCCceeecccchHHHHHHHHHHHHHHHhCCCCC
Confidence 0001123457888886 579999883 35789999999999999999999999999999
Q ss_pred HHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 446 PAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 446 p~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
++|||++|++||+++.. +..+..||||+||+.+|++
T Consensus 239 ~~~v~~~L~~tA~~~~~-----------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 239 PADIRDALRSTALDMGE-----------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHhCcccCC-----------CCCCCCcCcCcccHHHHhh
Confidence 99999999999987642 2345689999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=381.13 Aligned_cols=254 Identities=26% Similarity=0.313 Sum_probs=171.3
Q ss_pred CCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhH
Q 042484 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLS 155 (620)
Q Consensus 76 G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAG 155 (620)
|+||+|||||||||++||+|.+.... .|...+ .+...+..++ .........+.|+.||||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~--------d~~~~~~~g~----d~~~~~~~~~~D~~gHGThvAG 64 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKF--------DYKAYLLPGM----DKWGGFYVIMYDFFSHGTSCAS 64 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccccc--------CcCCCccCCc----CCCCCccCCCCCccccchhHHH
Confidence 89999999999999999999753110 000000 0000011111 0001112346789999999999
Q ss_pred hhcccCCCCCceecc-CCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHH-------HHH--HHhCCCcEEeecH-H--
Q 042484 156 RAGGNFVAGASVFGF-GKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAA-------FDM--AIHDGVDMLSVSL-V-- 222 (620)
Q Consensus 156 iaag~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~a-------i~~--a~~~gvdVIn~Sl-~-- 222 (620)
||||.........|+ ....+.||||+|+|+.+|++... +.+....+.++ ++| +.++++||||||| .
T Consensus 65 iiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~ 143 (311)
T cd07497 65 VAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFG-DVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISN 143 (311)
T ss_pred HHhccCcccccccccccccceeeeCCCCEEEEEEEEecC-CcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCC
Confidence 999986432221111 12468999999999999999755 33433333333 333 3368999999999 1
Q ss_pred -------------HHHHHH-HHhcCcEEEEecCCCCCCCCccCCC--CCceEEecccccCCcccceEEeCCCeEEEEeec
Q 042484 223 -------------AIGSFH-AVQHGIVVVCSDGNEGLVDVTLQNA--APRQIVVGASTMDRDLSNYVVLGNNKRFKLISE 286 (620)
Q Consensus 223 -------------~~~~~~-a~~~Gv~vV~AAGN~G~~~~t~~~~--ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~ 286 (620)
...... +.++|+++|+||||+|+...++..| ++++|+|||++.....+...
T Consensus 144 ~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~------------- 210 (311)
T cd07497 144 FAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL------------- 210 (311)
T ss_pred CCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh-------------
Confidence 111221 2489999999999999876666655 58999999975322100000
Q ss_pred cCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcce
Q 042484 287 RAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYY 366 (620)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 366 (620)
T Consensus 211 -------------------------------------------------------------------------------- 210 (311)
T cd07497 211 -------------------------------------------------------------------------------- 210 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceeecC-------------------CCcEEecccc
Q 042484 367 NLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKRR-------------------IPFNSISGTS 424 (620)
Q Consensus 367 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~~-------------------~~y~~~sGTS 424 (620)
........+.++.||||||+ ++||||+|++ ..|..++|||
T Consensus 211 ------------------~~~~~~~~~~~~~fSs~Gp~~~g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTS 272 (311)
T cd07497 211 ------------------FGYLPGGSGDVVSWSSRGPSIAGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTS 272 (311)
T ss_pred ------------------hccccCCCCCccccccCCCCcccCCCCceeccCcceEeecccCCCCcccCCCcceeeecchh
Confidence 00000113557899999997 6899999821 2689999999
Q ss_pred chhhhhhhhhhhhcccCC------CCCHHHHHHHHHccc
Q 042484 425 MSGPYISGIAGLPKILHP------DWSPAAVQSAIMTTA 457 (620)
Q Consensus 425 MAaP~VAG~aALl~~~~P------~~sp~~ik~~L~~TA 457 (620)
||||||||++|||+|++| .++|++||++|++||
T Consensus 273 mAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 273 MATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred hhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999999999999999886 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-45 Score=395.52 Aligned_cols=376 Identities=19% Similarity=0.229 Sum_probs=222.6
Q ss_pred CCCCCcEEEEeccccCCCCcCcCC-CCCCCCCCCcceeeecCCCCCcccCc-cccccc--cccCCCCCCCCCCCCCCCCC
Q 042484 74 RYGEDIIIGNLDTGVWRESKSFGD-EGFGPIPSKWKGICQNDKDARFHCNR-YFNQDY--AVHKGPLNSSFYSARDKNGH 149 (620)
Q Consensus 74 ~~G~GV~VgVIDTGId~~Hp~f~~-~g~~~~~~~~~g~~~~~~~~~~~~n~-~~~~~~--~~~~~~~~~~~~~~~D~~gH 149 (620)
.+|+||+|||||||||++||+|++ +|.+++...|++....+..+...... ++..+- .......+.+.....|+.||
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~GH 80 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGH 80 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCccccCceEEeHHHHHHHHhcCCccccCcCCCCCCc
Confidence 379999999999999999999996 67889999999887755431111111 111100 00011122334456789999
Q ss_pred hhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCC----------CCHHHHHHHHHHHHhC-----CC
Q 042484 150 GSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGG----------CYDCDIIAAFDMAIHD-----GV 214 (620)
Q Consensus 150 GTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~----------~~~~~i~~ai~~a~~~-----gv 214 (620)
||||||||||+..+ ...+.||||+|+|+++|++... +. +...+++.||+|+++. .+
T Consensus 81 GThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~-~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p 151 (455)
T cd07478 81 GTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAK-KYLREFYEDVPFYQETDIMLAIKYLYDKALELNKP 151 (455)
T ss_pred hHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCC-CcccccccccccCcHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999642 2568999999999999999887 43 6788999999999874 36
Q ss_pred cEEeecH------------HHHHHHHHHhc-CcEEEEecCCCCCCCCccCCC-----CC--ceEEecccccCCcccceEE
Q 042484 215 DMLSVSL------------VAIGSFHAVQH-GIVVVCSDGNEGLVDVTLQNA-----AP--RQIVVGASTMDRDLSNYVV 274 (620)
Q Consensus 215 dVIn~Sl------------~~~~~~~a~~~-Gv~vV~AAGN~G~~~~t~~~~-----ap--~vitVga~~~~~~~~~~~~ 274 (620)
.|||||| ++.+...+..+ |++||+||||+|....+.... .. --+.|+. .+..+.-+++
T Consensus 152 ~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~--~~~~~~~eiW 229 (455)
T cd07478 152 LVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGE--GEKGFNLEIW 229 (455)
T ss_pred eEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECC--CCcceEEEEe
Confidence 7999999 45555555554 999999999999643333221 11 1123333 1122211222
Q ss_pred eCCCeEEEEeeccC-CC----CC----CCceeeEE--------EccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEE
Q 042484 275 LGNNKRFKLISERA-KG----LP----SDKLFTFI--------RTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVL 337 (620)
Q Consensus 275 ~g~~~~~~g~~~~~-~~----~~----~~~~~~~~--------~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~ 337 (620)
...-..+.-.-+.+ ++ .. ....+.+. ....+....|.-.+..+. .+ ...|---+.+
T Consensus 230 ~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~------~~-~~~GiW~i~~ 302 (455)
T cd07478 230 GDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRF------KN-IKPGIWKIRL 302 (455)
T ss_pred cCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEc------cC-CCccceEEEE
Confidence 21111110000000 00 00 00001111 122233333333333220 00 0011111222
Q ss_pred ecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEEeCCce---eec--CCCCCceeeccCCCCC---CCCCc
Q 042484 338 VNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPTT---EFG--AKPAPYMAALSSKGPI---HITPE 409 (620)
Q Consensus 338 ~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~~---~~~--~~~~~~~a~FSS~GP~---~~kPd 409 (620)
..... .......|+|.-.+...+. .++......++++..... .++ +.....++.||||||+ ++|||
T Consensus 303 ~~~~~---~~g~~~~Wlp~~~~~~~~t---~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~~~~~kpd 376 (455)
T cd07478 303 TGVSI---TDGRFDAWLPSRGLLSENT---RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTRDGRIKPD 376 (455)
T ss_pred EeccC---CCceEEEEecCcCcCCCCC---EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCCCCCcCce
Confidence 22111 1112234555444333222 233333333333322111 111 2234568999999998 68999
Q ss_pred eee---------cCCCcEEeccccchhhhhhhhhhhhcccC------CCCCHHHHHHHHHcccccCCCCcceeccCCCCC
Q 042484 410 ILK---------RRIPFNSISGTSMSGPYISGIAGLPKILH------PDWSPAAVQSAIMTTATTQDNKKQQILDASFTE 474 (620)
Q Consensus 410 i~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~------P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~ 474 (620)
|+| +.+.|..++|||||||||||++|||+|.+ |.|++++||++|++||+++.. ..
T Consensus 377 i~APG~~i~s~~~~~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~----------~~ 446 (455)
T cd07478 377 IAAPGVNILTASPGGGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPG----------DE 446 (455)
T ss_pred EEecCCCEEEeecCCcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCC----------CC
Confidence 999 66789999999999999999999999865 567999999999999998742 24
Q ss_pred CCCceeccc
Q 042484 475 ATPFSYGAG 483 (620)
Q Consensus 475 ~~~~~~GaG 483 (620)
+++.+||||
T Consensus 447 ~pn~~~GyG 455 (455)
T cd07478 447 YPNPEWGYG 455 (455)
T ss_pred CCCCCCCCC
Confidence 567899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-44 Score=377.70 Aligned_cols=289 Identities=26% Similarity=0.387 Sum_probs=203.8
Q ss_pred cccccCC-CCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCC-CCcccCcccccc----c-cccCCCCCCCC
Q 042484 68 SIWEKAR-YGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKD-ARFHCNRYFNQD----Y-AVHKGPLNSSF 140 (620)
Q Consensus 68 ~~~~~~~-~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~-~~~~~n~~~~~~----~-~~~~~~~~~~~ 140 (620)
++|+++. +|+||+|||||||||++||+|.+....+. .|+..+..... ....+++|+.+. | .. ......
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 75 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKA--KYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYA---DNNDDI 75 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCccc--ccchhhhhhhhcccCCCCcccccCCCeeEcCC---CCCCcc
Confidence 3788887 99999999999999999999986533221 11100000000 111122222221 1 00 001112
Q ss_pred CCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeC--CCCCCCHHHHHHHHHHHHhCCCcEEe
Q 042484 141 YSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWD--GMGGCYDCDIIAAFDMAIHDGVDMLS 218 (620)
Q Consensus 141 ~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~~~~i~~ai~~a~~~gvdVIn 218 (620)
....|..+|||||||||+|...+.. ....+.||||+|+|+.+|++.. . +.+....++++++++++.|++|||
T Consensus 76 ~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~-~~~~~~~~~~ai~~a~~~g~~Vin 149 (346)
T cd07475 76 LDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEG-GSTYDDAYAKAIEDAVKLGADVIN 149 (346)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCC-CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 2245788999999999999874311 1346899999999999999974 3 568889999999999999999999
Q ss_pred ecH------------HHHHHHHHHhcCcEEEEecCCCCCCCCccCC----------------CCCceEEecccccCCccc
Q 042484 219 VSL------------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQN----------------AAPRQIVVGASTMDRDLS 270 (620)
Q Consensus 219 ~Sl------------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~----------------~ap~vitVga~~~~~~~~ 270 (620)
||| +..+..++.++|+++|+||||+|........ ..+.+|+|++...
T Consensus 150 ~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~----- 224 (346)
T cd07475 150 MSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK----- 224 (346)
T ss_pred ECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccc-----
Confidence 999 4556677889999999999999853322111 1244455544220
Q ss_pred ceEEeCCCeEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCC
Q 042484 271 NYVVLGNNKRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTD 350 (620)
Q Consensus 271 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~ 350 (620)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEeecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceee---------cCCCcE
Q 042484 351 RHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK---------RRIPFN 418 (620)
Q Consensus 351 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a---------~~~~y~ 418 (620)
.........++.||+|||+ ++||||+| ..+.|.
T Consensus 225 -----------------------------------~~~~~~~~~~~~~S~~G~~~~~~~~pdi~apG~~i~s~~~~~~~~ 269 (346)
T cd07475 225 -----------------------------------KVPNPNGGQMSGFSSWGPTPDLDLKPDITAPGGNIYSTVNDNTYG 269 (346)
T ss_pred -----------------------------------ccCCCCCCccCCCcCCCCCcccCcCCeEEeCCCCeEEecCCCceE
Confidence 0011223557789999997 58999998 456788
Q ss_pred Eeccccchhhhhhhhhhhhccc----CCCCCHHH----HHHHHHcccccCCCCcceeccCCCCCCCCceecccccCcccc
Q 042484 419 SISGTSMSGPYISGIAGLPKIL----HPDWSPAA----VQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLA 490 (620)
Q Consensus 419 ~~sGTSMAaP~VAG~aALl~~~----~P~~sp~~----ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A 490 (620)
.++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+.... ...+.++.+.++|+|+||+.+|
T Consensus 270 ~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~A 344 (346)
T cd07475 270 YMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKA 344 (346)
T ss_pred eeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc-----CCCCccCCccccCcchhcHHHh
Confidence 9999999999999999999997 79999877 788899999853211 1224567888999999999999
Q ss_pred CC
Q 042484 491 MD 492 (620)
Q Consensus 491 ~~ 492 (620)
++
T Consensus 345 v~ 346 (346)
T cd07475 345 IA 346 (346)
T ss_pred hC
Confidence 85
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=361.19 Aligned_cols=228 Identities=25% Similarity=0.285 Sum_probs=183.6
Q ss_pred ccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCC
Q 042484 69 IWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNG 148 (620)
Q Consensus 69 ~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~g 148 (620)
+|..+++|+||+|||||+|||++||+|.+..+.+....| ....+..|..+
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~------------------------------~~~~~~~~~~g 51 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYA------------------------------AAACQDGGASA 51 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCcc------------------------------ccCCCCCCCCC
Confidence 799999999999999999999999999864221110000 01123456789
Q ss_pred ChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-------
Q 042484 149 HGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL------- 221 (620)
Q Consensus 149 HGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl------- 221 (620)
|||||||||+|+. ...+.||||+|+|+.+|++......++..++++||++|++.|+|||||||
T Consensus 52 HGT~VAgii~g~~----------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~ 121 (267)
T cd07476 52 HGTHVASLIFGQP----------CSSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTG 121 (267)
T ss_pred cHHHHHHHHhcCC----------CCCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCC
Confidence 9999999999875 22478999999999999998762234578999999999999999999999
Q ss_pred -----HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCce
Q 042484 222 -----VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKL 296 (620)
Q Consensus 222 -----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 296 (620)
+..+..++.++|+++|+||||+|......+...|++|+||+...+
T Consensus 122 ~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 171 (267)
T cd07476 122 EADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------------------------ 171 (267)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC------------------------------
Confidence 456677788999999999999997665566667999999985421
Q ss_pred eeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCc
Q 042484 297 FTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHP 376 (620)
Q Consensus 297 ~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 376 (620)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCC----
Q 042484 377 VGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPD---- 443 (620)
Q Consensus 377 ~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~---- 443 (620)
+.++.||++||...+|||+| +++.|..++|||||||||||++|||+|++|.
T Consensus 172 ----------------~~~~~~s~~g~~~~~~~l~ApG~~i~~~~~~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~ 235 (267)
T cd07476 172 ----------------GLPLKFSNWGADYRKKGILAPGENILGAALGGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAP 235 (267)
T ss_pred ----------------CCeeeecCCCCCCCCceEEecCCCceeecCCCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCC
Confidence 11345777777666777776 5678999999999999999999999999887
Q ss_pred CCHHHHHHHHHcccccCCC
Q 042484 444 WSPAAVQSAIMTTATTQDN 462 (620)
Q Consensus 444 ~sp~~ik~~L~~TA~~~~~ 462 (620)
++|++||++|++||+++..
T Consensus 236 ~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 236 PDPLAVRRALLETATPCDP 254 (267)
T ss_pred CCHHHHHHHHHHhCccCCC
Confidence 9999999999999998854
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=368.63 Aligned_cols=270 Identities=26% Similarity=0.322 Sum_probs=201.6
Q ss_pred ccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCC
Q 042484 67 NSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDK 146 (620)
Q Consensus 67 ~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~ 146 (620)
+.+|+.+++|+||+|||||+|||++||+|.+. +.+.... ..+.+ +..+.+. ......+..++.|.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~-~~~~~~~-----~~~~d-------~~~~~~~--~~~~~~~~~~~~d~ 67 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGC-FGPGCKV-----AGGYD-------FVGDDYD--GTNPPVPDDDPMDC 67 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcC-CCCCcee-----ccccc-------cCCcccc--cccCCCCCCCCCCC
Confidence 48999999999999999999999999999853 1111000 00000 1111110 00111223456778
Q ss_pred CCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-----
Q 042484 147 NGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----- 221 (620)
Q Consensus 147 ~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl----- 221 (620)
.+|||||||||+|...+ ..+.||||+|+|+.+|++... +....+.+++++++|++++++||||||
T Consensus 68 ~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~-~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~~ 137 (312)
T cd07489 68 QGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCS-GSTTEDTIIAAFLRAYEDGADVITASLGGPSG 137 (312)
T ss_pred CCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCC-CCCCHHHHHHHHHHHHhcCCCEEEeCCCcCCC
Confidence 99999999999988632 458899999999999999876 668888999999999999999999999
Q ss_pred -----HHHHHHHHHhcCcEEEEecCCCCCCCC---ccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCC
Q 042484 222 -----VAIGSFHAVQHGIVVVCSDGNEGLVDV---TLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPS 293 (620)
Q Consensus 222 -----~~~~~~~a~~~Gv~vV~AAGN~G~~~~---t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 293 (620)
+.....++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 138 ~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------------------------- 188 (312)
T cd07489 138 WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------------------------- 188 (312)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------------------------
Confidence 456667788899999999999985422 1223357888888732
Q ss_pred CceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccC
Q 042484 294 DKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFT 373 (620)
Q Consensus 294 ~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 373 (620)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceeec-----------CCCcEEeccccchhhhhhhhhhhhcc
Q 042484 374 RHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKR-----------RIPFNSISGTSMSGPYISGIAGLPKI 439 (620)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~-----------~~~y~~~sGTSMAaP~VAG~aALl~~ 439 (620)
+.||+|||+ ..||||+|+ .+.|..++|||||||+|||++|||+|
T Consensus 189 ----------------------~~~s~~g~~~~~~~kpdv~ApG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~ 246 (312)
T cd07489 189 ----------------------SYFSSWGPTNELYLKPDVAAPGGNILSTYPLAGGGYAVLSGTSMATPYVAGAAALLIQ 246 (312)
T ss_pred ----------------------CCccCCCCCCCCCcCccEEcCCCCEEEeeeCCCCceEeeccHHHHHHHHHHHHHHHHH
Confidence 235666665 356777661 23488999999999999999999999
Q ss_pred cC-CCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCCCc
Q 042484 440 LH-PDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDPG 494 (620)
Q Consensus 440 ~~-P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~~~ 494 (620)
++ |.+++.+||++|++||..+......-. ...+++...+|+|+||+.+|++..
T Consensus 247 ~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~--~~~~~~~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 247 ARHGKLSPAELRDLLASTAKPLPWSDGTSA--LPDLAPVAQQGAGLVNAYKALYAT 300 (312)
T ss_pred hcCCCCCHHHHHHHHHHhCccccccCCCcc--ccCCCCHhhcCcceeeHHHHhcCC
Confidence 99 999999999999999998754321100 011466789999999999999954
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=355.03 Aligned_cols=265 Identities=38% Similarity=0.544 Sum_probs=193.3
Q ss_pred CCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccc-ccc--CCCCCCCCCCCCCCCCChhh
Q 042484 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDY-AVH--KGPLNSSFYSARDKNGHGSH 152 (620)
Q Consensus 76 G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~-~~~--~~~~~~~~~~~~D~~gHGTH 152 (620)
|+||+|||||+|||++||+|.+..+ +.. .+.. +.+ +....+ ... ............|..+||||
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-~~~-~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~ 67 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-PND-KVKG----GYD-------FVDDDYDPMDTRPYPSPLGDASAGDATGHGTH 67 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-CCC-ceee----eeE-------CccCCCCcccccccccccccCCCCCCCCcHHH
Confidence 8999999999999999999984321 000 0010 000 000000 000 00000012234568899999
Q ss_pred hhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----------H
Q 042484 153 TLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----------V 222 (620)
Q Consensus 153 VAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl----------~ 222 (620)
|||+|+|...+ ...+.|+||+|+|+.+|++... +.+....++++|+++++++++|||||| +
T Consensus 68 vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~-~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~~~~~~ 138 (295)
T cd07474 68 VAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPG-GSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDDPD 138 (295)
T ss_pred HHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCC-CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHH
Confidence 99999988643 3468899999999999999865 568899999999999999999999999 5
Q ss_pred HHHHHHHHhcCcEEEEecCCCCCCCCccCC--CCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeEE
Q 042484 223 AIGSFHAVQHGIVVVCSDGNEGLVDVTLQN--AAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTFI 300 (620)
Q Consensus 223 ~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~--~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 300 (620)
..+...+.++|+++|+||||+|........ ..+++|+||++.....
T Consensus 139 ~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------------------- 186 (295)
T cd07474 139 AIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------------------- 186 (295)
T ss_pred HHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------------------
Confidence 667778889999999999999976655533 4689999999541110
Q ss_pred EccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEE
Q 042484 301 RTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYI 380 (620)
Q Consensus 301 ~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i 380 (620)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCceeecCCCCCceeeccCCC-CC---CCCCceee---------cC--CCcEEeccccchhhhhhhhhhhhcccCCCCC
Q 042484 381 KRPTTEFGAKPAPYMAALSSKG-PI---HITPEILK---------RR--IPFNSISGTSMSGPYISGIAGLPKILHPDWS 445 (620)
Q Consensus 381 ~~~~~~~~~~~~~~~a~FSS~G-P~---~~kPdi~a---------~~--~~y~~~sGTSMAaP~VAG~aALl~~~~P~~s 445 (620)
........|+++| |+ .+||||+| .. ..|..++|||||||+|||++|||+|++|+|+
T Consensus 187 ---------~~~~~~~~~~s~~~~~~~~~~kpdv~apG~~i~~~~~~~~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~ 257 (295)
T cd07474 187 ---------AEADTVGPSSSRGPPTSDSAIKPDIVAPGVDIMSTAPGSGTGYARMSGTSMAAPHVAGAAALLKQAHPDWS 257 (295)
T ss_pred ---------CCCCceeccCCCCCCCCCCCcCCCEECCcCceEeeccCCCCceEEeccHHHHHHHHHHHHHHHHhhCCCCC
Confidence 0001122344444 43 57999988 12 6789999999999999999999999999999
Q ss_pred HHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCcccc
Q 042484 446 PAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLA 490 (620)
Q Consensus 446 p~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A 490 (620)
+++||++|++||++....+. ...++..+|+|+||+.+|
T Consensus 258 ~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 258 PAQIKAALMNTAKPLYDSDG-------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHHHHHHhhCcccccCCC-------CcCChhccCcceeccccC
Confidence 99999999999998764332 123567899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=353.31 Aligned_cols=183 Identities=23% Similarity=0.305 Sum_probs=143.1
Q ss_pred CCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeec
Q 042484 141 YSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVS 220 (620)
Q Consensus 141 ~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~S 220 (620)
..+.|..+|||||||||+|...+ ...+.||||+|+|+.+|++.. +.....++++||+||++.|++|||||
T Consensus 79 ~~~~~~~gHGT~VAGiIaa~~~n--------~~g~~GvAp~a~i~~~k~~~~--g~~~~~~i~~Ai~~a~~~g~~IiN~S 148 (291)
T cd07483 79 NGPISDADHGTHVAGIIAAVRDN--------GIGIDGVADNVKIMPLRIVPN--GDERDKDIANAIRYAVDNGAKVINMS 148 (291)
T ss_pred CCCCCCCCcHHHHHHHHhCcCCC--------CCceEEECCCCEEEEEEEecC--CCcCHHHHHHHHHHHHHCCCcEEEeC
Confidence 34567899999999999988643 234889999999999999864 34778899999999999999999999
Q ss_pred H----------HHHHHHHHHhcCcEEEEecCCCCCCCCcc---C--------CCCCceEEecccccCCcccceEEeCCCe
Q 042484 221 L----------VAIGSFHAVQHGIVVVCSDGNEGLVDVTL---Q--------NAAPRQIVVGASTMDRDLSNYVVLGNNK 279 (620)
Q Consensus 221 l----------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~---~--------~~ap~vitVga~~~~~~~~~~~~~g~~~ 279 (620)
| +..+...+.++|+++|+||||+|...... + ...+.+|+||++.....
T Consensus 149 ~G~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~~----------- 217 (291)
T cd07483 149 FGKSFSPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKYE----------- 217 (291)
T ss_pred CCCCCCCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccCC-----------
Confidence 9 44566678899999999999998532111 1 11355666666432110
Q ss_pred EEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEe
Q 042484 280 RFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVI 359 (620)
Q Consensus 280 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i 359 (620)
T Consensus 218 -------------------------------------------------------------------------------- 217 (291)
T cd07483 218 -------------------------------------------------------------------------------- 217 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhh
Q 042484 360 TFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYI 430 (620)
Q Consensus 360 ~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~V 430 (620)
...++.||++|+. ++||+| +.+.|..++|||||||||
T Consensus 218 --------------------------------~~~~~~~Sn~G~~--~vdi~APG~~i~s~~~~~~~~~~sGTS~AaP~v 263 (291)
T cd07483 218 --------------------------------NNLVANFSNYGKK--NVDVFAPGERIYSTTPDNEYETDSGTSMAAPVV 263 (291)
T ss_pred --------------------------------cccccccCCCCCC--ceEEEeCCCCeEeccCcCCeEeeccHHHHHHHH
Confidence 1124567777763 456665 556899999999999999
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHHcccc
Q 042484 431 SGIAGLPKILHPDWSPAAVQSAIMTTAT 458 (620)
Q Consensus 431 AG~aALl~~~~P~~sp~~ik~~L~~TA~ 458 (620)
||++|||+|++|+|++.|||++|++||.
T Consensus 264 aG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 264 SGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=339.75 Aligned_cols=220 Identities=21% Similarity=0.276 Sum_probs=168.2
Q ss_pred cEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhhc
Q 042484 79 IIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAG 158 (620)
Q Consensus 79 V~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiaa 158 (620)
|+|||||||||++||+|.+.-.. ..+. ......|..+|||||||||+
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~-------------------------~~~~--------~~~~~~~~~~HGT~vAgiia 47 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA-------------------------RLFF--------AGPGAPAPSAHGTAVASLLA 47 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc-------------------------cccC--------CCCCCCCCCCCHHHHHHHHh
Confidence 78999999999999999753110 0000 01135678899999999999
Q ss_pred ccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCC--CCCCHHHHHHHHHHHHhCCCcEEeecH-------HHHHHHHH
Q 042484 159 GNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGM--GGCYDCDIIAAFDMAIHDGVDMLSVSL-------VAIGSFHA 229 (620)
Q Consensus 159 g~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~--g~~~~~~i~~ai~~a~~~gvdVIn~Sl-------~~~~~~~a 229 (620)
|+... ..||||+|+|+.+|++.... +.++.+++++||+||++.|++|||||| +..+..++
T Consensus 48 ~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~~~~l~~ai~~a 116 (239)
T cd05561 48 GAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPPNALLAAAVAAA 116 (239)
T ss_pred CCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCHHHHHHHHHH
Confidence 88521 17999999999999998641 246788999999999999999999999 66777788
Q ss_pred HhcCcEEEEecCCCCCCC-CccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeEEEccCCCcc
Q 042484 230 VQHGIVVVCSDGNEGLVD-VTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTFIRTLDPKKV 308 (620)
Q Consensus 230 ~~~Gv~vV~AAGN~G~~~-~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (620)
.++|+++|+||||+|+.. ...+...+.+|+|++++.+..
T Consensus 117 ~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~~~---------------------------------------- 156 (239)
T cd05561 117 AARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDARGR---------------------------------------- 156 (239)
T ss_pred HHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCCCC----------------------------------------
Confidence 899999999999999653 234445689999998653321
Q ss_pred cccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEEeCCceeec
Q 042484 309 KGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPTTEFG 388 (620)
Q Consensus 309 ~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~ 388 (620)
T Consensus 157 -------------------------------------------------------------------------------- 156 (239)
T cd05561 157 -------------------------------------------------------------------------------- 156 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHHHHHHHHccccc
Q 042484 389 AKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459 (620)
Q Consensus 389 ~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~ 459 (620)
++.||++||. +||.| +.+.|..++|||||||||||++|||+|++| ++++|||++|++||++
T Consensus 157 ------~~~~s~~g~~---~di~ApG~~i~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~ 226 (239)
T cd05561 157 ------LYREANRGAH---VDFAAPGVDVWVAAPGGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKD 226 (239)
T ss_pred ------ccccCCCCCc---ceEEccccceecccCCCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhc
Confidence 1122223221 11111 356799999999999999999999999999 9999999999999988
Q ss_pred CCCCcceeccCCCCCCCCceeccc
Q 042484 460 QDNKKQQILDASFTEATPFSYGAG 483 (620)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~GaG 483 (620)
+.. +.....||||
T Consensus 227 ~g~-----------~~~d~~~G~G 239 (239)
T cd05561 227 LGP-----------PGRDPVFGYG 239 (239)
T ss_pred cCC-----------CCcCCCcCCC
Confidence 743 3345688887
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=352.71 Aligned_cols=197 Identities=24% Similarity=0.267 Sum_probs=151.8
Q ss_pred CCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCC-CCHHHHHHHHHHHHhCCCcEEeecH-
Q 042484 144 RDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGG-CYDCDIIAAFDMAIHDGVDMLSVSL- 221 (620)
Q Consensus 144 ~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~-~~~~~i~~ai~~a~~~gvdVIn~Sl- 221 (620)
.|+.+|||||||||||+..+ ...+.||||+|+|+.+|++....+. +....+++||++|++.|+|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 47789999999999998532 3568899999999999998754222 3446799999999999999999999
Q ss_pred ----------HHHHHH-HHHhcCcEEEEecCCCCCCCCccCCC---CCceEEecccccCCcccceEEeCCCeEEEEeecc
Q 042484 222 ----------VAIGSF-HAVQHGIVVVCSDGNEGLVDVTLQNA---APRQIVVGASTMDRDLSNYVVLGNNKRFKLISER 287 (620)
Q Consensus 222 ----------~~~~~~-~a~~~Gv~vV~AAGN~G~~~~t~~~~---ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~ 287 (620)
+...+. .+.++|+++|+||||+|+..+++..| .+.+|+|||......+.....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~------------- 320 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYS------------- 320 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccccc-------------
Confidence 112222 34578999999999999987777655 478999999532211000000
Q ss_pred CCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCccee
Q 042484 288 AKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYN 367 (620)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 367 (620)
T Consensus 321 -------------------------------------------------------------------------------- 320 (412)
T cd04857 321 -------------------------------------------------------------------------------- 320 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceeecC-----------CCcEEeccccchhhhhhhh
Q 042484 368 LFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKRR-----------IPFNSISGTSMSGPYISGI 433 (620)
Q Consensus 368 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~~-----------~~y~~~sGTSMAaP~VAG~ 433 (620)
......+.++.||||||+ .+||||+|++ ..|..|+|||||||||||+
T Consensus 321 -------------------~~~~~~~~~~~fSSrGP~~dG~~~pdI~APG~~I~s~p~~~~~~~~~~sGTSmAaP~VAG~ 381 (412)
T cd04857 321 -------------------LREKLPGNQYTWSSRGPTADGALGVSISAPGGAIASVPNWTLQGSQLMNGTSMSSPNACGG 381 (412)
T ss_pred -------------------cccccCCccccccccCCcccCCcCceEEeCCCcEEEcccCCCCCeEEecccHHHHHHHHHH
Confidence 000113457899999998 6899999932 4588999999999999999
Q ss_pred hhhhcc----cCCCCCHHHHHHHHHcccccC
Q 042484 434 AGLPKI----LHPDWSPAAVQSAIMTTATTQ 460 (620)
Q Consensus 434 aALl~~----~~P~~sp~~ik~~L~~TA~~~ 460 (620)
+|||++ .+|+|+|++||++|++||+++
T Consensus 382 aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 382 IALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred HHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 999974 578999999999999999863
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=340.63 Aligned_cols=226 Identities=28% Similarity=0.379 Sum_probs=174.3
Q ss_pred CCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhH
Q 042484 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLS 155 (620)
Q Consensus 76 G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAG 155 (620)
|+||+|||||||||++||+|.+. |++......+ ...| ++. .......+.|..+|||||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~~~~--~~~~-~~d---------~~~~~~~~~d~~~HGT~vag 60 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGGSAD--HDYN-WFD---------PVGNTPLPYDDNGHGTHTMG 60 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCCCcc--cccc-ccc---------CCCCCCCCCCCCCchhhhhh
Confidence 89999999999999999999863 1111100000 0000 110 01123456688899999999
Q ss_pred hhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh------------CCCcEEeecH--
Q 042484 156 RAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH------------DGVDMLSVSL-- 221 (620)
Q Consensus 156 iaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~------------~gvdVIn~Sl-- 221 (620)
||+|.... +...||||+|+|+.+|++... + +...+++++++++++ .++|||||||
T Consensus 61 ii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~ 129 (264)
T cd07481 61 TMVGNDGD---------GQQIGVAPGARWIACRALDRN-G-GNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGG 129 (264)
T ss_pred heeecCCC---------CCceEECCCCeEEEEEeecCC-C-CcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCc
Confidence 99987532 334899999999999999877 4 888999999999975 7899999999
Q ss_pred -------HHHHHHHHHhcCcEEEEecCCCCCCCCc---cCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCC
Q 042484 222 -------VAIGSFHAVQHGIVVVCSDGNEGLVDVT---LQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGL 291 (620)
Q Consensus 222 -------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t---~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 291 (620)
+..+...+.++|++||+||||+|..... .+...+++|+||+.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------- 184 (264)
T cd07481 130 PSGDNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN------------------------- 184 (264)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-------------------------
Confidence 3445566778999999999999854433 23346889999884321
Q ss_pred CCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecc
Q 042484 292 PSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFT 371 (620)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 371 (620)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcc
Q 042484 372 FTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKI 439 (620)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~ 439 (620)
..++.||++||. +.||||+| +++.|..++|||||||+|||++|||+|
T Consensus 185 ---------------------~~~~~~S~~g~~~~~~~~~dv~ApG~~i~s~~~~~~~~~~~GTS~AaP~vaG~aAll~~ 243 (264)
T cd07481 185 ---------------------DVLADFSSRGPSTYGRIKPDISAPGVNIRSAVPGGGYGSSSGTSMAAPHVAGVAALLWS 243 (264)
T ss_pred ---------------------CCCccccCCCCCCCCCcCceEEECCCCeEEecCCCceEeeCcHHHHHHHHHHHHHHHHH
Confidence 234578999997 48999988 567889999999999999999999999
Q ss_pred cCCC--CCHHHHHHHHHcccc
Q 042484 440 LHPD--WSPAAVQSAIMTTAT 458 (620)
Q Consensus 440 ~~P~--~sp~~ik~~L~~TA~ 458 (620)
++|+ ++++|||++|++||+
T Consensus 244 ~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 244 ANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred hCCCCCCCHHHHHHHHHHhcC
Confidence 9999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=341.25 Aligned_cols=177 Identities=23% Similarity=0.213 Sum_probs=128.9
Q ss_pred cccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCC
Q 042484 68 SIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKN 147 (620)
Q Consensus 68 ~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~ 147 (620)
.+|..+++|+||+|||||||||++||+|.+...... .. .+..++.. ............|..
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~-----------~~-------~~~~~~~~-~~~~~~~~~~~~~~~ 61 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG-----------YD-------PAVNGYNF-VPNVGDIDNDVSVGG 61 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCC-----------cc-------cccCCccc-ccccCCcCCCCCCCC
Confidence 479999999999999999999999999986411100 00 00000000 000001123445778
Q ss_pred CChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH------
Q 042484 148 GHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL------ 221 (620)
Q Consensus 148 gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl------ 221 (620)
||||||||||+|+..+.....|.+ ...|+||+|+|+.+|++... +.+..+.++++|++|++.|++||||||
T Consensus 62 gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~-~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~ 138 (273)
T cd07485 62 GHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGR-YYVGDDAVAAAIVYAADNGAVILQNSWGGTGGG 138 (273)
T ss_pred CCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCC-CCccHHHHHHHHHHHHHcCCcEEEecCCCCCcc
Confidence 999999999999864322222221 34579999999999999887 568889999999999999999999999
Q ss_pred -----HHHHHHHHHhc-------CcEEEEecCCCCCCCCccCCCCCceEEecccccC
Q 042484 222 -----VAIGSFHAVQH-------GIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMD 266 (620)
Q Consensus 222 -----~~~~~~~a~~~-------Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~ 266 (620)
+..+...+.++ |+++|+||||+|......+...+.+|+|++++.+
T Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~ 195 (273)
T cd07485 139 IYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN 195 (273)
T ss_pred ccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC
Confidence 34455566677 9999999999997766656667999999997644
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=334.30 Aligned_cols=221 Identities=25% Similarity=0.327 Sum_probs=166.7
Q ss_pred CcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCC-CCCCCCChhhhhHh
Q 042484 78 DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYS-ARDKNGHGSHTLSR 156 (620)
Q Consensus 78 GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~D~~gHGTHVAGi 156 (620)
||+|||||||||++||+|....... +.+...+ .++ ..+... ..|..+||||||||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~~-----~~~i~~~------------~~~-------~~~~~~~~~~~~~HGT~vagi 56 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLFK-----NLRILGE------------YDF-------VDNSNNTNYTDDDHGTAVLST 56 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcccc-----CCceeee------------ecC-------ccCCCCCCCCCCCchhhhhee
Confidence 7999999999999999995211000 0000000 011 001111 36788999999999
Q ss_pred hcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCC-CCCCHHHHHHHHHHHHhCCCcEEeecH-------H------
Q 042484 157 AGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGM-GGCYDCDIIAAFDMAIHDGVDMLSVSL-------V------ 222 (620)
Q Consensus 157 aag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~~i~~ai~~a~~~gvdVIn~Sl-------~------ 222 (620)
|+|.. .+.+.||||+|+|+.+|+..... .......+++|+++|.+.|++|||||| .
T Consensus 57 ia~~~----------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~ 126 (261)
T cd07493 57 MAGYT----------PGVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTY 126 (261)
T ss_pred eeeCC----------CCCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccc
Confidence 99875 24578999999999999875431 224566789999999999999999999 1
Q ss_pred ----------HHHHHHHHhcCcEEEEecCCCCCCC---CccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCC
Q 042484 223 ----------AIGSFHAVQHGIVVVCSDGNEGLVD---VTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAK 289 (620)
Q Consensus 223 ----------~~~~~~a~~~Gv~vV~AAGN~G~~~---~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~ 289 (620)
..+...+.++|+++|+||||+|... ...+...+++|+|||...+
T Consensus 127 ~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~----------------------- 183 (261)
T cd07493 127 ADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN----------------------- 183 (261)
T ss_pred ccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC-----------------------
Confidence 2345567899999999999999652 2233346899999984311
Q ss_pred CCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeee
Q 042484 290 GLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLF 369 (620)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 369 (620)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceee---------cCCCcEEeccccchhhhhhhhhhhh
Q 042484 370 FTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK---------RRIPFNSISGTSMSGPYISGIAGLP 437 (620)
Q Consensus 370 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl 437 (620)
+.++.||++||+ ++||||++ ..+.|..++|||||||+|||++|||
T Consensus 184 -----------------------~~~~~~S~~G~~~~~~~~pdi~a~G~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAll 240 (261)
T cd07493 184 -----------------------GNKASFSSIGPTADGRLKPDVMALGTGIYVINGDGNITYANGTSFSCPLIAGLIACL 240 (261)
T ss_pred -----------------------CCCCccCCcCCCCCCCcCCceEecCCCeEEEcCCCcEEeeCcHHHHHHHHHHHHHHH
Confidence 124568888886 57888888 4567899999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHcccc
Q 042484 438 KILHPDWSPAAVQSAIMTTAT 458 (620)
Q Consensus 438 ~~~~P~~sp~~ik~~L~~TA~ 458 (620)
+|++|+|++.|||++|++||+
T Consensus 241 ~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 241 WQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred HHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=335.70 Aligned_cols=146 Identities=27% Similarity=0.342 Sum_probs=112.5
Q ss_pred CCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCC
Q 042484 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSAR 144 (620)
Q Consensus 65 ~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 144 (620)
++..+|+++++|+||+|||||||||..|| |...++ .+.... .. .......
T Consensus 9 ~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~~~~------------~~----------~~~~~~~ 58 (298)
T cd07494 9 NATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVRVVL------------AP----------GATDPAC 58 (298)
T ss_pred ChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cceeec------------CC----------CCCCCCC
Confidence 34699999999999999999999999998 764321 111100 00 0122356
Q ss_pred CCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH---
Q 042484 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--- 221 (620)
Q Consensus 145 D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--- 221 (620)
|+.|||||||+++ .||||+|+|+.+|++.+ ..+.+++||+||++.++|||||||
T Consensus 59 D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~-----~~~~~~~ai~~a~~~g~dVIn~SlG~~ 115 (298)
T cd07494 59 DENGHGTGESANL------------------FAIAPGAQFIGVKLGGP-----DLVNSVGAFKKAISLSPDIISNSWGYD 115 (298)
T ss_pred CCCCcchheeece------------------eEeCCCCeEEEEEccCC-----CcHHHHHHHHHHHhcCCCEEEeecccC
Confidence 7889999998764 38999999999999753 456789999999999999999999
Q ss_pred ------------------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccC
Q 042484 222 ------------------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMD 266 (620)
Q Consensus 222 ------------------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~ 266 (620)
+..++.+|.++|++||+||||++. ..+...|++|+||+++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~ 175 (298)
T cd07494 116 LRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVD 175 (298)
T ss_pred CCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEecc
Confidence 123445677999999999999974 345667999999997543
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=328.36 Aligned_cols=225 Identities=30% Similarity=0.412 Sum_probs=178.4
Q ss_pred CCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhH
Q 042484 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLS 155 (620)
Q Consensus 76 G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAG 155 (620)
|+||+|+|||+|||++||+|.+..... +. +.. .........|..+|||||||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~----~~----------------~~~--------~~~~~~~~~d~~~HGT~vAg 52 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRF----AD----------------FVN--------TVNGRTTPYDDNGHGTHVAG 52 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccccc----cc----------------ccc--------cccCCCCCCCCCCchHHHHH
Confidence 899999999999999999998631100 00 000 00123345677899999999
Q ss_pred hhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC----CCcEEeecH----------
Q 042484 156 RAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD----GVDMLSVSL---------- 221 (620)
Q Consensus 156 iaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~----gvdVIn~Sl---------- 221 (620)
||+|...+. ...+.||||+|+|+.+|++... +....+++++||+++++. +++||||||
T Consensus 53 iiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~-~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~ 124 (264)
T cd07487 53 IIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDS-GSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGE 124 (264)
T ss_pred HHhcCCccc-------CCceEEECCCCeEEEEEeecCC-CCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCC
Confidence 999986431 3558999999999999999887 677889999999999998 999999999
Q ss_pred --HHHHHHHHHhcCcEEEEecCCCCCCCCccC--CCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCcee
Q 042484 222 --VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQ--NAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLF 297 (620)
Q Consensus 222 --~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~--~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 297 (620)
+..+...+.++|+++|+||||++....++. ...+.+|+||+...+...
T Consensus 125 ~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~---------------------------- 176 (264)
T cd07487 125 DPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPH---------------------------- 176 (264)
T ss_pred CHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCC----------------------------
Confidence 456677788999999999999997665433 346899999995433210
Q ss_pred eEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcE
Q 042484 298 TFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPV 377 (620)
Q Consensus 298 ~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 377 (620)
T Consensus 177 -------------------------------------------------------------------------------- 176 (264)
T cd07487 177 -------------------------------------------------------------------------------- 176 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCceeecCCCCCceeeccCCCCC---CCCCceee------------------cCCCcEEeccccchhhhhhhhhhh
Q 042484 378 GYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK------------------RRIPFNSISGTSMSGPYISGIAGL 436 (620)
Q Consensus 378 ~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a------------------~~~~y~~~sGTSMAaP~VAG~aAL 436 (620)
...++.||++||+ +.||||+| ..+.|..++|||||||+|||++||
T Consensus 177 --------------~~~~~~~s~~G~~~~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al 242 (264)
T cd07487 177 --------------DDGISYFSSRGPTGDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATPHVSGAIAL 242 (264)
T ss_pred --------------CccccccccCCCCCCCCcCCCEEccccceEeccccccccCCCCCCceEeccccchHHHHHHHHHHH
Confidence 0224578888886 57888887 234678899999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHcccc
Q 042484 437 PKILHPDWSPAAVQSAIMTTAT 458 (620)
Q Consensus 437 l~~~~P~~sp~~ik~~L~~TA~ 458 (620)
|+|++|++++.+||++|++||+
T Consensus 243 l~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 243 LLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=325.31 Aligned_cols=161 Identities=27% Similarity=0.354 Sum_probs=129.2
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
...+|..+ +|+||+|||||+|||++||+|....+ ..++. .......+.|
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~~-------------------------~~~~~-----~~~~~~~~~d 66 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVKF-------------------------VLGYD-----FVDNDSDAMD 66 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccCCc-------------------------cccee-----ccCCCCCCCC
Confidence 35889988 99999999999999999999853211 00110 0001223567
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---- 221 (620)
..+|||||||||++...+ ...+.|+||+|+|+.+|++... +.+...+++++|+++++.+++||||||
T Consensus 67 ~~~HGT~vagii~~~~~~--------~~~~~Giap~a~l~~~~v~~~~-~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~ 137 (260)
T cd07484 67 DNGHGTHVAGIIAAATNN--------GTGVAGVAPKAKIMPVKVLDAN-GSGSLADIANGIRYAADKGAKVINLSLGGGL 137 (260)
T ss_pred CCCcHHHHHHHHhCccCC--------CCceEeECCCCEEEEEEEECCC-CCcCHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 889999999999987532 2457899999999999999877 668889999999999999999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccC
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMD 266 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~ 266 (620)
+......+.++|++||+||||+|......+...+++|+||+.+.+
T Consensus 138 ~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~ 186 (260)
T cd07484 138 GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD 186 (260)
T ss_pred CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC
Confidence 566667778999999999999998776777778999999996543
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=333.54 Aligned_cols=228 Identities=22% Similarity=0.207 Sum_probs=166.1
Q ss_pred EEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhhcc
Q 042484 80 IIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGG 159 (620)
Q Consensus 80 ~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiaag 159 (620)
+|||||||||..||+|.+.-. ... .+ ......+.|..||||||||||++
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~------------~~~------------~~-------~~~~~~~~d~~gHGT~vAgiia~ 50 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALA------------EDD------------LD-------SDEPGWTADDLGHGTAVAGLALY 50 (291)
T ss_pred EEEEecCCCCCCChhhhhhhc------------ccc------------cc-------ccCCCCcCCCCCChHHHHHHHHc
Confidence 799999999999999975200 000 00 00011156899999999999997
Q ss_pred cCCCCCceeccCCceeeeecCCCeEEEEEeeeCCC---CCCCHHHHHHHHHHHHhCC---CcEEeecH------------
Q 042484 160 NFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGM---GGCYDCDIIAAFDMAIHDG---VDMLSVSL------------ 221 (620)
Q Consensus 160 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~---g~~~~~~i~~ai~~a~~~g---vdVIn~Sl------------ 221 (620)
.... .....|+||+|+|+.+|++.... +..+.+++++||+++++.. ++||||||
T Consensus 51 ~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~ 122 (291)
T cd04847 51 GDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPS 122 (291)
T ss_pred Cccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCC
Confidence 6522 23567999999999999998761 2456789999999999853 48999999
Q ss_pred -HHHHH-HHHHhcCcEEEEecCCCCCCCCcc------------CCCCCceEEecccccCCcccceEEeCCCeEEEEeecc
Q 042484 222 -VAIGS-FHAVQHGIVVVCSDGNEGLVDVTL------------QNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISER 287 (620)
Q Consensus 222 -~~~~~-~~a~~~Gv~vV~AAGN~G~~~~t~------------~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~ 287 (620)
+.... ..+.++|++||+||||+|+..... +..++++|+|||.+.+........ +
T Consensus 123 ~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~------------~ 190 (291)
T cd04847 123 SWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR------------Y 190 (291)
T ss_pred cHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc------------c
Confidence 12233 235689999999999999765432 123578999999764432100000 0
Q ss_pred CCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCccee
Q 042484 288 AKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYN 367 (620)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 367 (620)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceeec---------------------------CCCc
Q 042484 368 LFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKR---------------------------RIPF 417 (620)
Q Consensus 368 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~---------------------------~~~y 417 (620)
+.......+.||||||. .+||||+|+ ...|
T Consensus 191 --------------------~~~~~~~~~~fs~~Gp~~~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T cd04847 191 --------------------SAVGPAPAGATTSSGPGSPGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGF 250 (291)
T ss_pred --------------------cccccccCCCccccCCCCCCCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcc
Confidence 00000112239999997 689999981 3568
Q ss_pred EEeccccchhhhhhhhhhhhcccCCCCCHHHHHHHHHcccc
Q 042484 418 NSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458 (620)
Q Consensus 418 ~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 458 (620)
..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 251 ~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 251 VTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred cccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=321.60 Aligned_cols=152 Identities=30% Similarity=0.374 Sum_probs=114.5
Q ss_pred CcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhh
Q 042484 78 DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRA 157 (620)
Q Consensus 78 GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGia 157 (620)
||+|||||||||++||+|.+.-. .|+. |.. ..........|..+|||||||||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~-----~~~~---------------~~~-------~~~~~~~~~~d~~~HGT~vAgii 53 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA-----QWAD---------------FDE-------NRRISATEVFDAGGHGTHVSGTI 53 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC-----Ccee---------------ccC-------CCCCCCCCCCCCCCcHHHHHHHH
Confidence 79999999999999999975310 0000 000 00112334567889999999999
Q ss_pred cccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH---------HHHHHHH
Q 042484 158 GGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---------VAIGSFH 228 (620)
Q Consensus 158 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---------~~~~~~~ 228 (620)
+|+.. ++...||||+|+|+.+|++... + +..++++++|+++++.+++|||||| +......
T Consensus 54 a~~~~---------~~~~~GvAp~a~i~~~~v~~~~-~-~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~ 122 (254)
T cd07490 54 GGGGA---------KGVYIGVAPEADLLHGKVLDDG-G-GSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEA 122 (254)
T ss_pred hcCCC---------CCCEEEECCCCEEEEEEEecCC-C-CcHHHHHHHHHHHHhCCCCEEEECCCcCCCCCcHHHHHHHH
Confidence 99863 2456799999999999999877 4 8889999999999999999999999 2222223
Q ss_pred HH-hcCcEEEEecCCCCCCCCccCCCCCceEEecccccCC
Q 042484 229 AV-QHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDR 267 (620)
Q Consensus 229 a~-~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~ 267 (620)
.. ++|+++|+||||+|......+...+++|+||+++.+.
T Consensus 123 ~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~ 162 (254)
T cd07490 123 LSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDD 162 (254)
T ss_pred HHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccC
Confidence 32 3699999999999977555555579999999976443
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=320.96 Aligned_cols=233 Identities=25% Similarity=0.330 Sum_probs=170.7
Q ss_pred CCcEEEEeccccCCCCcCcCCCCCCCCCCCccee---eecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhh
Q 042484 77 EDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGI---CQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHT 153 (620)
Q Consensus 77 ~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~---~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHV 153 (620)
+||+|||||||||++||+|.+. .|... +..+.+ ..++.+..+-+. ........++.|..+|||||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~d~~~HGT~v 69 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGID--DDGNGYVDDIYG---WNFVNNDNDPMDDNGHGTHV 69 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcc--cCCCCcccCCCc---ccccCCCCCCCCCCCcHHHH
Confidence 7999999999999999999864 22211 111111 001111111110 01112345567889999999
Q ss_pred hHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH--------HHHH
Q 042484 154 LSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--------VAIG 225 (620)
Q Consensus 154 AGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--------~~~~ 225 (620)
||||+|...+ ...+.||||+|+|+.+|++... +.++..+++++|+++++.+++|||+|| +..+
T Consensus 70 a~ii~~~~~~--------~~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~~~~~~~~ 140 (259)
T cd07473 70 AGIIGAVGNN--------GIGIAGVAWNVKIMPLKFLGAD-GSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDA 140 (259)
T ss_pred HHHHHCcCCC--------CCceEEeCCCCEEEEEEEeCCC-CCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCCCHHHHHH
Confidence 9999988643 2447899999999999999887 668899999999999999999999999 5667
Q ss_pred HHHHHhcCcEEEEecCCCCCCC---CccCC--CCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeEE
Q 042484 226 SFHAVQHGIVVVCSDGNEGLVD---VTLQN--AAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTFI 300 (620)
Q Consensus 226 ~~~a~~~Gv~vV~AAGN~G~~~---~t~~~--~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 300 (620)
...+.++|+++|+||||+|... ...+. ..+++|+||+.+.+..
T Consensus 141 ~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~~~-------------------------------- 188 (259)
T cd07473 141 IARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSNDA-------------------------------- 188 (259)
T ss_pred HHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCCCC--------------------------------
Confidence 7788899999999999998652 22222 2478999998653321
Q ss_pred EccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEE
Q 042484 301 RTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYI 380 (620)
Q Consensus 301 ~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i 380 (620)
T Consensus 189 -------------------------------------------------------------------------------- 188 (259)
T cd07473 189 -------------------------------------------------------------------------------- 188 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHHHHH
Q 042484 381 KRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQS 451 (620)
Q Consensus 381 ~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~ 451 (620)
.+.||++||. +||+.| ..+.|..++|||||||+|||++|||+|++|.+++++||+
T Consensus 189 --------------~~~~s~~g~~--~~~~~apG~~~~~~~~~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~ 252 (259)
T cd07473 189 --------------LASFSNYGKK--TVDLAAPGVDILSTSPGGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKD 252 (259)
T ss_pred --------------cCcccCCCCC--CcEEEeccCCeEeccCCCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 1224444442 223332 456789999999999999999999999999999999999
Q ss_pred HHHcccc
Q 042484 452 AIMTTAT 458 (620)
Q Consensus 452 ~L~~TA~ 458 (620)
+|++||+
T Consensus 253 ~L~~tA~ 259 (259)
T cd07473 253 AILSSAD 259 (259)
T ss_pred HHHHhCC
Confidence 9999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=324.90 Aligned_cols=176 Identities=18% Similarity=0.171 Sum_probs=118.9
Q ss_pred CcEEEEeccccCCCCcCcCCCCCCCCCCCccee-e-ecC--CC-CCcccCccccccccccCCCCCCCCCCCCCCCCChhh
Q 042484 78 DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGI-C-QND--KD-ARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSH 152 (620)
Q Consensus 78 GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~-~-~~~--~~-~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTH 152 (620)
||+|||||||||++||+|.+.-.... ...... . ..+ .+ .......|+...+ ............+..+||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~-d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~HGT~ 76 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGY-DFISDPAIANDGDGRDSDPTDPGDWVTGDD---VPPGGFCGSGVSPSSWHGTH 76 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCc-ccccCcccccCCCCCCCCCCCccccccccc---ccccccccCCCCCCCCCHHH
Confidence 79999999999999999986421000 000000 0 000 00 0000000111111 00011123345678899999
Q ss_pred hhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHH----------hCCCcEEeecH-
Q 042484 153 TLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAI----------HDGVDMLSVSL- 221 (620)
Q Consensus 153 VAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~----------~~gvdVIn~Sl- 221 (620)
|||||+|...+ ...+.||||+|+|+.+|++... + .+.+++++|++|++ .++++||||||
T Consensus 77 vAgiiaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~-~-~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G 146 (285)
T cd07496 77 VAGTIAAVTNN--------GVGVAGVAWGARILPVRVLGKC-G-GTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLG 146 (285)
T ss_pred HHHHHhCcCCC--------CCCceeecCCCeEEEEEEecCC-C-CcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCC
Confidence 99999998642 2457899999999999999876 4 48889999999998 46789999999
Q ss_pred --------HHHHHHHHHhcCcEEEEecCCCCCCC-CccCCCCCceEEecccccCC
Q 042484 222 --------VAIGSFHAVQHGIVVVCSDGNEGLVD-VTLQNAAPRQIVVGASTMDR 267 (620)
Q Consensus 222 --------~~~~~~~a~~~Gv~vV~AAGN~G~~~-~t~~~~ap~vitVga~~~~~ 267 (620)
+..+...+.++|++||+||||+|... ...+...+.+|+||++..+.
T Consensus 147 ~~~~~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~~ 201 (285)
T cd07496 147 GDGACSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLRG 201 (285)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCCC
Confidence 45566778899999999999999765 33445578999999976554
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=321.42 Aligned_cols=215 Identities=30% Similarity=0.401 Sum_probs=168.9
Q ss_pred ccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCC
Q 042484 69 IWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNG 148 (620)
Q Consensus 69 ~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~g 148 (620)
.|..+++|+||+|||||+||+++||+|.+.. ..+. .+ . ...+..|..+
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~------------~~~~------------~~-~-------~~~~~~d~~~ 64 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRA------------IWGA------------DF-V-------GGDPDSDCNG 64 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCe------------eeee------------ec-C-------CCCCCCCCCc
Confidence 7778899999999999999999999997531 0000 00 0 0111567889
Q ss_pred ChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC-----CCcEEeecH--
Q 042484 149 HGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD-----GVDMLSVSL-- 221 (620)
Q Consensus 149 HGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~-----gvdVIn~Sl-- 221 (620)
|||||||||+++. .||||+|+|+.+|++... +....+.++++++++++. +++||||||
T Consensus 65 HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~-~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~ 129 (255)
T cd04077 65 HGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCN-GSGTLSGIIAGLEWVANDATKRGKPAVANMSLGG 129 (255)
T ss_pred cHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCC-CCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCC
Confidence 9999999999652 599999999999999887 668889999999999987 489999999
Q ss_pred -----HHHHHHHHHhcCcEEEEecCCCCCCCC-ccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCc
Q 042484 222 -----VAIGSFHAVQHGIVVVCSDGNEGLVDV-TLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDK 295 (620)
Q Consensus 222 -----~~~~~~~a~~~Gv~vV~AAGN~G~~~~-t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 295 (620)
+..+...+.++|+++|+||||+|.... ..+...+++|+||+.+.+..
T Consensus 130 ~~~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~~~--------------------------- 182 (255)
T cd04077 130 GASTALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSDDA--------------------------- 182 (255)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCCCC---------------------------
Confidence 666777888999999999999996543 33445689999999654332
Q ss_pred eeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCC
Q 042484 296 LFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRH 375 (620)
Q Consensus 296 ~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 375 (620)
T Consensus 183 -------------------------------------------------------------------------------- 182 (255)
T cd04077 183 -------------------------------------------------------------------------------- 182 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee-----------cCCCcEEeccccchhhhhhhhhhhhcccCCCC
Q 042484 376 PVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK-----------RRIPFNSISGTSMSGPYISGIAGLPKILHPDW 444 (620)
Q Consensus 376 ~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a-----------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~ 444 (620)
.+.||++||.. |++| ..+.|..++|||||||+|||++|||+|++|++
T Consensus 183 -------------------~~~~S~~g~~~---~i~apG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~ 240 (255)
T cd04077 183 -------------------RASFSNYGSCV---DIFAPGVDILSAWIGSDTATATLSGTSMAAPHVAGLAAYLLSLGPDL 240 (255)
T ss_pred -------------------ccCcccCCCCC---cEEeCCCCeEecccCCCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCC
Confidence 12233333321 1221 14678999999999999999999999999999
Q ss_pred CHHHHHHHHHccccc
Q 042484 445 SPAAVQSAIMTTATT 459 (620)
Q Consensus 445 sp~~ik~~L~~TA~~ 459 (620)
+++|||++|++||++
T Consensus 241 ~~~~v~~~L~~tA~~ 255 (255)
T cd04077 241 SPAEVKARLLNLATK 255 (255)
T ss_pred CHHHHHHHHHhhccC
Confidence 999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=313.25 Aligned_cols=151 Identities=23% Similarity=0.245 Sum_probs=117.0
Q ss_pred cEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhhc
Q 042484 79 IIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAG 158 (620)
Q Consensus 79 V~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiaa 158 (620)
|+|||||+|||++||+|.+.. +. ..++. .......+.|..+|||||||||+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~--~~----------------------~~~~~-----~~~~~~~~~~~~~HGT~vAgiia 51 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP--KL----------------------VPGWN-----FVSNNDPTSDIDGHGTACAGVAA 51 (242)
T ss_pred CEEEEecCCCCCCChhhccCc--Cc----------------------cCCcc-----ccCCCCCCCCCCCCHHHHHHHHH
Confidence 789999999999999998620 00 00110 00011245678899999999999
Q ss_pred ccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH------------HHHHH
Q 042484 159 GNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL------------VAIGS 226 (620)
Q Consensus 159 g~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl------------~~~~~ 226 (620)
|+..+ ...+.||||+|+|+.+|++... +.+...++.++++++++.+++|||||| +..+.
T Consensus 52 g~~~~--------~~~~~Gvap~a~i~~~~~~~~~-~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~ 122 (242)
T cd07498 52 AVGNN--------GLGVAGVAPGAKLMPVRIADSL-GYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAA 122 (242)
T ss_pred hccCC--------CceeEeECCCCEEEEEEEECCC-CCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHH
Confidence 88632 3457899999999999999877 567889999999999999999999999 33444
Q ss_pred HHHHh-cCcEEEEecCCCCCCCCccCCCCCceEEecccccCC
Q 042484 227 FHAVQ-HGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDR 267 (620)
Q Consensus 227 ~~a~~-~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~ 267 (620)
..+.. +|+++|+||||+|......+...+++|+||+.+.+.
T Consensus 123 ~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~~ 164 (242)
T cd07498 123 TYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSND 164 (242)
T ss_pred HHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCCC
Confidence 55667 999999999999976655566689999999976443
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=321.38 Aligned_cols=134 Identities=25% Similarity=0.353 Sum_probs=103.5
Q ss_pred cCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChh
Q 042484 72 KARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGS 151 (620)
Q Consensus 72 ~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 151 (620)
.+++|+||+|||||||||.+||+|.+.... ..+| .+...+.|..||||
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~~------------------------~~~~--------~~~~~~~d~~gHGT 50 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDIT------------------------TKSF--------VGGEDVQDGHGHGT 50 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCccc------------------------Cccc--------CCCCCCCCCCCcHH
Confidence 568999999999999999999999853110 0011 00112467889999
Q ss_pred hhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-H--------
Q 042484 152 HTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL-V-------- 222 (620)
Q Consensus 152 HVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl-~-------- 222 (620)
||||||+|+..+ +...||||+|+|+.+|++... +.+....+++||+||++.|++|||||| .
T Consensus 51 ~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~-~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~ 120 (297)
T cd07480 51 HCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGD-GGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQ 120 (297)
T ss_pred HHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCC-CCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccc
Confidence 999999988632 445799999999999999876 567788899999999999999999999 1
Q ss_pred ------------HHHHHHH---------------HhcCcEEEEecCCCCCCC
Q 042484 223 ------------AIGSFHA---------------VQHGIVVVCSDGNEGLVD 247 (620)
Q Consensus 223 ------------~~~~~~a---------------~~~Gv~vV~AAGN~G~~~ 247 (620)
......+ ..+|+++|+||||+|...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 121 GWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred cCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 0111122 578999999999998543
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=322.80 Aligned_cols=248 Identities=25% Similarity=0.258 Sum_probs=175.5
Q ss_pred cCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChh
Q 042484 72 KARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGS 151 (620)
Q Consensus 72 ~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 151 (620)
++++|+||+|||||||||++||+|.+..... . ...++...... .......|..+|||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~~------------~---~~~~~~~~~~~--------~~~~~~~d~~~HGT 58 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFNK------------T---NLFHRKIVRYD--------SLSDTKDDVDGHGT 58 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcCc------------C---ccCcccEEEee--------ccCCCCCCCCCCcc
Confidence 5789999999999999999999997642100 0 00000000000 00112227899999
Q ss_pred hhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----------
Q 042484 152 HTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---------- 221 (620)
Q Consensus 152 HVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---------- 221 (620)
||||||+|....... ...+.||||+|+|+.+|++..........++..+++++.+.+++||||||
T Consensus 59 ~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~~~~ 133 (293)
T cd04842 59 HVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTL 133 (293)
T ss_pred hhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccccch
Confidence 999999998743210 11579999999999999988762135667789999999999999999999
Q ss_pred HHHHHHHHH-h-cCcEEEEecCCCCCCCC---ccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCce
Q 042484 222 VAIGSFHAV-Q-HGIVVVCSDGNEGLVDV---TLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKL 296 (620)
Q Consensus 222 ~~~~~~~a~-~-~Gv~vV~AAGN~G~~~~---t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 296 (620)
...+..++. + +|+++|+||||+|.... ..+...+++|+|||++.+.......
T Consensus 134 ~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~~----------------------- 190 (293)
T cd04842 134 LARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGEG----------------------- 190 (293)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccccc-----------------------
Confidence 122332222 3 89999999999996654 3444579999999976443210000
Q ss_pred eeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCc
Q 042484 297 FTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHP 376 (620)
Q Consensus 297 ~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 376 (620)
...
T Consensus 191 -----------------------------------------------~~~------------------------------ 193 (293)
T cd04842 191 -----------------------------------------------GLG------------------------------ 193 (293)
T ss_pred -----------------------------------------------ccc------------------------------
Confidence 000
Q ss_pred EEEEeCCceeecCCCCCceeeccCCCCC---CCCCceee-------c-----------CCCcEEeccccchhhhhhhhhh
Q 042484 377 VGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK-------R-----------RIPFNSISGTSMSGPYISGIAG 435 (620)
Q Consensus 377 ~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a-------~-----------~~~y~~~sGTSMAaP~VAG~aA 435 (620)
.......++.||++||+ +.||||+| . ...|...+|||||||+|||++|
T Consensus 194 -----------~~~~~~~~~~~S~~G~~~~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aA 262 (293)
T cd04842 194 -----------QSDNSDTVASFSSRGPTYDGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSKSGTSMATPLVAGAAA 262 (293)
T ss_pred -----------ccCCCCccccccCcCCCCCCCcCCCEECCCCCeEeccCCCCCCCCCChhheeecCcHHHHHHHHHHHHH
Confidence 00113457789999997 67999998 1 2467889999999999999999
Q ss_pred hhcccC-----C---CCCHHHHHHHHHcccc
Q 042484 436 LPKILH-----P---DWSPAAVQSAIMTTAT 458 (620)
Q Consensus 436 Ll~~~~-----P---~~sp~~ik~~L~~TA~ 458 (620)
||+|++ | .+++.++|++|++||+
T Consensus 263 ll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 263 LLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred HHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=318.21 Aligned_cols=149 Identities=19% Similarity=0.146 Sum_probs=106.1
Q ss_pred CccccccC-CCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCC
Q 042484 66 PNSIWEKA-RYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSAR 144 (620)
Q Consensus 66 ~~~~~~~~-~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 144 (620)
+..+|+.. ..|+||+|+|||+|||.+||+|.++.... + ....+.
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~--------------------------~---------~~~~~~ 48 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL--------------------------I---------SGLTDQ 48 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc--------------------------c---------CCCCCC
Confidence 56899874 45999999999999999999998641100 0 001156
Q ss_pred CCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh----CCCcEEeec
Q 042484 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH----DGVDMLSVS 220 (620)
Q Consensus 145 D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~----~gvdVIn~S 220 (620)
|+.+|||||||||+|..+ ...+.||||+|+|+.+|++. .++++++|++|++ .++.+||||
T Consensus 49 d~~gHGT~VAGiIaa~~n---------~~G~~GvAp~a~l~~i~v~~-------~~~~~~ai~~A~~~~~~~~v~~in~s 112 (277)
T cd04843 49 ADSDHGTAVLGIIVAKDN---------GIGVTGIAHGAQAAVVSSTR-------VSNTADAILDAADYLSPGDVILLEMQ 112 (277)
T ss_pred CCCCCcchhheeeeeecC---------CCceeeeccCCEEEEEEecC-------CCCHHHHHHHHHhccCCCCEEEEEcc
Confidence 788999999999998741 23478999999999999975 1234555666655 456678998
Q ss_pred H-----------------HHHHHHHHHhcCcEEEEecCCCCCCCCccC----------C---CCCceEEeccccc
Q 042484 221 L-----------------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQ----------N---AAPRQIVVGASTM 265 (620)
Q Consensus 221 l-----------------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~----------~---~ap~vitVga~~~ 265 (620)
| +..++.++.++|+++|+||||++....... . ..+++|+|||++.
T Consensus 113 ~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~ 187 (277)
T cd04843 113 TGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSS 187 (277)
T ss_pred ccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccC
Confidence 7 123556777999999999999985421111 1 1357888888653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=320.23 Aligned_cols=160 Identities=23% Similarity=0.304 Sum_probs=112.6
Q ss_pred CcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCcccccc-ccccCCCCCCCCCCCCCCCCChhhhhHh
Q 042484 78 DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQD-YAVHKGPLNSSFYSARDKNGHGSHTLSR 156 (620)
Q Consensus 78 GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~-~~~~~~~~~~~~~~~~D~~gHGTHVAGi 156 (620)
.|+|||||||||++||+|.+.-. .. .+- +...+ +...............|..||||||||+
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~-~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgi 62 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSIS-SY---SKN--------------LVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQ 62 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccc-cc---ccc--------------cccCCCcCCccccccCCCCcCCCCCCcHhHHHHH
Confidence 48999999999999999985210 00 000 00000 0000000111234456789999999999
Q ss_pred hcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH---------------
Q 042484 157 AGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--------------- 221 (620)
Q Consensus 157 aag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--------------- 221 (620)
|+|+. ...||||+|+|+.+|+++.. +.....+++++|++|++++++||||||
T Consensus 63 ia~~~------------~~~GvAp~a~i~~~~v~~~~-~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~ 129 (294)
T cd07482 63 IAANG------------NIKGVAPGIGIVSYRVFGSC-GSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDV 129 (294)
T ss_pred HhcCC------------CCceeCCCCEEEEEEeecCC-CCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchh
Confidence 99864 13499999999999999877 556889999999999999999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCCC----------------------ccCCCCCceEEecccccCCc
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDV----------------------TLQNAAPRQIVVGASTMDRD 268 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~~----------------------t~~~~ap~vitVga~~~~~~ 268 (620)
+..+...+.++|++||+||||+|.... ..+...+++|+|||++.+..
T Consensus 130 ~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~~~~ 202 (294)
T cd07482 130 EYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDNNGN 202 (294)
T ss_pred hhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCCCCC
Confidence 122344566899999999999996431 12223589999999765543
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=306.01 Aligned_cols=149 Identities=26% Similarity=0.341 Sum_probs=118.4
Q ss_pred CcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhh
Q 042484 78 DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRA 157 (620)
Q Consensus 78 GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGia 157 (620)
||+|||||+||+++||+|.+.-. .+ ..+. ........|..+|||||||||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~------------~~------------~~~~------~~~~~~~~~~~~HGT~vA~ii 50 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIV------------GG------------ANFT------GDDNNDYQDGNGHGTHVAGII 50 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcccc------------Cc------------cccc------CCCCCCCCCCCCCHHHHHHHH
Confidence 79999999999999999985310 00 0010 000134567889999999999
Q ss_pred cccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH--------HHHHHHHH
Q 042484 158 GGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--------VAIGSFHA 229 (620)
Q Consensus 158 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--------~~~~~~~a 229 (620)
++... ...+.|+||+|+|+.+|++... +.+...++++++++|++.|++|||||| +..+...+
T Consensus 51 ~~~~~---------~~~~~giap~a~i~~~~~~~~~-~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~a 120 (229)
T cd07477 51 AALDN---------GVGVVGVAPEADLYAVKVLNDD-GSGTYSDIIAGIEWAIENGMDIINMSLGGPSDSPALREAIKKA 120 (229)
T ss_pred hcccC---------CCccEeeCCCCEEEEEEEECCC-CCcCHHHHHHHHHHHHHCCCCEEEECCccCCCCHHHHHHHHHH
Confidence 98863 2357899999999999999887 667788999999999999999999999 55666778
Q ss_pred HhcCcEEEEecCCCCCCCCcc--CCCCCceEEecccccC
Q 042484 230 VQHGIVVVCSDGNEGLVDVTL--QNAAPRQIVVGASTMD 266 (620)
Q Consensus 230 ~~~Gv~vV~AAGN~G~~~~t~--~~~ap~vitVga~~~~ 266 (620)
.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 121 ~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~ 159 (229)
T cd07477 121 YAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN 159 (229)
T ss_pred HHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC
Confidence 899999999999999765554 5567999999997644
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=319.52 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=114.3
Q ss_pred CCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCC-
Q 042484 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSA- 143 (620)
Q Consensus 65 ~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~- 143 (620)
....+|+.+++|+||+|+|||||||+.||+|.+...... .|. |... .....+
T Consensus 27 ~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~~--~~~----------------~~~~---------~~~~~~~ 79 (297)
T cd04059 27 NVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEA--SYD----------------FNDN---------DPDPTPR 79 (297)
T ss_pred ccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccccc--ccc----------------ccCC---------CCCCCCc
Confidence 457999999999999999999999999999985311000 000 0000 011112
Q ss_pred -CCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-
Q 042484 144 -RDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL- 221 (620)
Q Consensus 144 -~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl- 221 (620)
.|..||||||||||+|+... .....||||+|+|+.+|++... ........++.++.+ .++||||||
T Consensus 80 ~~~~~gHGT~vAgiiag~~~~--------~~~~~GvAp~a~l~~~~~~~~~---~~~~~~~~~~~~~~~-~~~Vin~S~g 147 (297)
T cd04059 80 YDDDNSHGTRCAGEIAAVGNN--------GICGVGVAPGAKLGGIRMLDGD---VTDVVEAESLGLNPD-YIDIYSNSWG 147 (297)
T ss_pred cccccccCcceeeEEEeecCC--------CcccccccccceEeEEEecCCc---cccHHHHHHHhcccC-CceEEECCCC
Confidence 27889999999999988632 1246899999999999998764 444555666666554 469999999
Q ss_pred --------------HHHHHHHHHh-----cCcEEEEecCCCCCCCCc--cC--CCCCceEEecccccCCc
Q 042484 222 --------------VAIGSFHAVQ-----HGIVVVCSDGNEGLVDVT--LQ--NAAPRQIVVGASTMDRD 268 (620)
Q Consensus 222 --------------~~~~~~~a~~-----~Gv~vV~AAGN~G~~~~t--~~--~~ap~vitVga~~~~~~ 268 (620)
...+..++.. +|+++|+||||+|+.... .. ...+++|+|||++.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~g~ 217 (297)
T cd04059 148 PDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTANGV 217 (297)
T ss_pred CCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCCCC
Confidence 1223334433 699999999999973222 11 23589999999775543
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=298.78 Aligned_cols=143 Identities=18% Similarity=0.263 Sum_probs=109.6
Q ss_pred CcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhh
Q 042484 78 DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRA 157 (620)
Q Consensus 78 GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGia 157 (620)
||+|||||||||++||+|.+.-... .. +....+ ........|..||||||||||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~------------~~-------~~~~~~-------~~~~~~~~d~~gHGT~vAgii 54 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDG------------EV-------TIDLEI-------IVVSAEGGDKDGHGTACAGII 54 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccccc------------cc-------cccccc-------ccCCCCCCCCCCcHHHHHHHH
Confidence 7999999999999999998631100 00 000001 112334567889999999999
Q ss_pred cccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----------HHHHHH
Q 042484 158 GGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----------VAIGSF 227 (620)
Q Consensus 158 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl----------~~~~~~ 227 (620)
++. +|+++|+.+|++... +.+..+.+++||+|++++|++|||||| +..+..
T Consensus 55 a~~------------------~p~~~i~~~~v~~~~-~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~~~~~~~~~~~ 115 (222)
T cd07492 55 KKY------------------APEAEIGSIKILGED-GRCNSFVLEKALRACVENDIRIVNLSLGGPGDRDFPLLKELLE 115 (222)
T ss_pred Hcc------------------CCCCeEEEEEEeCCC-CCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCcCHHHHHHHH
Confidence 843 499999999999887 678899999999999999999999999 455666
Q ss_pred HHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccC
Q 042484 228 HAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMD 266 (620)
Q Consensus 228 ~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~ 266 (620)
++.++|+++|+||||+++.... +...+.+|+|++...+
T Consensus 116 ~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~ 153 (222)
T cd07492 116 YAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTAD 153 (222)
T ss_pred HHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCC
Confidence 7778899999999999864332 4456899999986533
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=304.83 Aligned_cols=156 Identities=22% Similarity=0.292 Sum_probs=116.9
Q ss_pred CCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhh
Q 042484 75 YGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTL 154 (620)
Q Consensus 75 ~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVA 154 (620)
+|+||+|+|||+||+++||+|.+...... . +.. ..........|..+||||||
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~-------~-------------~~~-------~~~~~~~~~~~~~~HGT~va 53 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS-------Y-------------YVA-------VNDAGYASNGDGDSHGTHVA 53 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc-------c-------------ccc-------cccccCCCCCCCCChHHHHH
Confidence 69999999999999999999986411100 0 000 00001233457789999999
Q ss_pred HhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCC-CCCHHHHHHHHHHHHhCCCcEEeecH---H--------
Q 042484 155 SRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMG-GCYDCDIIAAFDMAIHDGVDMLSVSL---V-------- 222 (620)
Q Consensus 155 Giaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~~i~~ai~~a~~~gvdVIn~Sl---~-------- 222 (620)
|||+|+.. .....|+||+|+|+.+|+++.. + .+....+.++++++++.+++|||||| .
T Consensus 54 giiag~~~---------~~~~~GiAp~a~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~ 123 (267)
T cd04848 54 GVIAAARD---------GGGMHGVAPDATLYSARASASA-GSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTT 123 (267)
T ss_pred HHHhcCcC---------CCCcccCCcCCEEEEEeccCCC-CcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccc
Confidence 99998863 2558899999999999999876 4 57788999999999999999999999 1
Q ss_pred ------------HHHHHHHHhcCcEEEEecCCCCCCCCccC---------CCCCceEEecccccCC
Q 042484 223 ------------AIGSFHAVQHGIVVVCSDGNEGLVDVTLQ---------NAAPRQIVVGASTMDR 267 (620)
Q Consensus 223 ------------~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~---------~~ap~vitVga~~~~~ 267 (620)
......+.++|+++|+||||++....... ...+.+|+||+++.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~ 189 (267)
T cd04848 124 YKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG 189 (267)
T ss_pred hhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC
Confidence 12345677899999999999985433322 2347899999976543
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=311.98 Aligned_cols=246 Identities=29% Similarity=0.437 Sum_probs=181.3
Q ss_pred EEEEeccccCCCCcCcC-CCCCCCCCCCcceeeecCCCCCcccCccccccc-cccCCCCCCCCCCCCCCCCChhhhhHhh
Q 042484 80 IIGNLDTGVWRESKSFG-DEGFGPIPSKWKGICQNDKDARFHCNRYFNQDY-AVHKGPLNSSFYSARDKNGHGSHTLSRA 157 (620)
Q Consensus 80 ~VgVIDTGId~~Hp~f~-~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~D~~gHGTHVAGia 157 (620)
+|||||||||++||+|. +. +. |.. +...| .. ..........|..+|||||||||
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~~-----~~~---------------~~~~~~~~---~~~~~~~~~~~~~~HGT~va~ii 56 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-FI-----WSK---------------VPGGYNFV---DGNPNPSPSDDDNGHGTHVAGII 56 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-EE-----EEE---------------EEEEEETT---TTBSTTTSSSTSSSHHHHHHHHH
T ss_pred CEEEEcCCcCCCChhHccCC-cc-----ccc---------------ccceeecc---CCCCCcCccccCCCccchhhhhc
Confidence 69999999999999998 32 10 000 00011 00 00012344567889999999999
Q ss_pred cccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHH-hCCCcEEeecH--------------H
Q 042484 158 GGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAI-HDGVDMLSVSL--------------V 222 (620)
Q Consensus 158 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~-~~gvdVIn~Sl--------------~ 222 (620)
+|.. .. ....+.|+||+|+|+.+|++... + .....++++|++++ +.+++|||||| +
T Consensus 57 ~~~~-~~------~~~~~~Gva~~a~l~~~~i~~~~-~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~ 127 (282)
T PF00082_consen 57 AGNG-GN------NGPGINGVAPNAKLYSYKIFDNS-G-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDIL 127 (282)
T ss_dssp HHTT-SS------SSSSETCSSTTSEEEEEECSSTT-S-EEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHH
T ss_pred cccc-cc------ccccccccccccccccccccccc-c-cccccccchhhhhhhccCCcccccccccccccccccccccc
Confidence 9986 11 23457899999999999998776 4 78889999999999 89999999999 2
Q ss_pred HHHHHHHHhcCcEEEEecCCCCCCCCc-cCCC--CCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeE
Q 042484 223 AIGSFHAVQHGIVVVCSDGNEGLVDVT-LQNA--APRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTF 299 (620)
Q Consensus 223 ~~~~~~a~~~Gv~vV~AAGN~G~~~~t-~~~~--ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 299 (620)
......+.++|+++|+||||+|+.... +..| .+++|+||+.....
T Consensus 128 ~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~~-------------------------------- 175 (282)
T PF00082_consen 128 EEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNNG-------------------------------- 175 (282)
T ss_dssp HHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETTS--------------------------------
T ss_pred ccccccccccCcceeecccccccccccccccccccccccccccccccc--------------------------------
Confidence 334456789999999999999866543 3333 47889998854211
Q ss_pred EEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEE
Q 042484 300 IRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGY 379 (620)
Q Consensus 300 ~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 379 (620)
T Consensus 176 -------------------------------------------------------------------------------- 175 (282)
T PF00082_consen 176 -------------------------------------------------------------------------------- 175 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCceeecCCCCCceeeccCCCCC----CCCCceeecC------------CCcEEeccccchhhhhhhhhhhhcccCCC
Q 042484 380 IKRPTTEFGAKPAPYMAALSSKGPI----HITPEILKRR------------IPFNSISGTSMSGPYISGIAGLPKILHPD 443 (620)
Q Consensus 380 i~~~~~~~~~~~~~~~a~FSS~GP~----~~kPdi~a~~------------~~y~~~sGTSMAaP~VAG~aALl~~~~P~ 443 (620)
.++.||++|+. ++||||++++ ..|..++|||||||+|||++|||+|++|+
T Consensus 176 --------------~~~~~s~~g~~~~~~~~~~di~a~G~~i~~~~~~~~~~~~~~~~GTS~Aap~vag~~All~~~~p~ 241 (282)
T PF00082_consen 176 --------------QPASYSNYGGPSDDGRIKPDIAAPGGNILSAVPGSDRGSYTSFSGTSFAAPVVAGAAALLLSKYPN 241 (282)
T ss_dssp --------------SBSTTSSBSTTETTCTTCEEEEEECSSEEEEETTTESEEEEEEESHHHHHHHHHHHHHHHHHHSTT
T ss_pred --------------cccccccccccccccccccccccccccccccccccccccccccCcCCchHHHHHHHHHHHHHHCCC
Confidence 23457777543 5788888722 23677999999999999999999999999
Q ss_pred CCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 444 WSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 444 ~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
|++++||.+|++||..+.... .......||+|++|+.+|++
T Consensus 242 ~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 242 LTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp SHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHHHH
T ss_pred CCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHHhC
Confidence 999999999999999876211 23455678999999999974
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=299.34 Aligned_cols=150 Identities=21% Similarity=0.204 Sum_probs=112.3
Q ss_pred CCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhH
Q 042484 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLS 155 (620)
Q Consensus 76 G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAG 155 (620)
+++|+|||||||||++||+|.+.- ..+.+ |... ....+.......|..||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i------------~~~~~--------~~~~----~~~~~~~~~~~~d~~gHGT~vAg 57 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKI------------IGGKS--------FSPY----EGDGNKVSPYYVSADGHGTAMAR 57 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccc------------ccCCC--------CCCC----CCCcccCCCCCCCCCCcHHHHHH
Confidence 789999999999999999998530 00000 0000 00000011223578899999999
Q ss_pred hhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCC------CCCHHHHHHHHHHHHhCCCcEEeecH--------
Q 042484 156 RAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMG------GCYDCDIIAAFDMAIHDGVDMLSVSL-------- 221 (620)
Q Consensus 156 iaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g------~~~~~~i~~ai~~a~~~gvdVIn~Sl-------- 221 (620)
||+ |+||+|+|+.+|++... + .+....+++||+||+++|+|||||||
T Consensus 58 iI~------------------gvap~a~i~~~kv~~~~-~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~ 118 (247)
T cd07491 58 MIC------------------RICPSAKLYVIKLEDRP-SPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDN 118 (247)
T ss_pred HHH------------------HHCCCCeEEEEEecccC-CCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccccc
Confidence 997 68999999999999876 3 45678999999999999999999999
Q ss_pred ------HHHHHHHHHhcCcEEEEecCCCCCCCC-ccCCC--CCceEEecccccCCc
Q 042484 222 ------VAIGSFHAVQHGIVVVCSDGNEGLVDV-TLQNA--APRQIVVGASTMDRD 268 (620)
Q Consensus 222 ------~~~~~~~a~~~Gv~vV~AAGN~G~~~~-t~~~~--ap~vitVga~~~~~~ 268 (620)
+..++.+|.++|++||+||||+|.... +...+ .|+||+|||++.++.
T Consensus 119 ~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~g~ 174 (247)
T cd07491 119 DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADEDGG 174 (247)
T ss_pred ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCCCC
Confidence 345566788999999999999997654 34333 589999999876543
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=291.11 Aligned_cols=271 Identities=22% Similarity=0.294 Sum_probs=204.4
Q ss_pred eeeeEEEEcCHHHHHHHhcCCCeEEEEeceeeeeccCC-----CccccCcccCCCCC-------CccccccCCCCCCcEE
Q 042484 14 HINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTH-----SWEFLGLEQNGRIP-------PNSIWEKARYGEDIII 81 (620)
Q Consensus 14 ~~~G~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~~~~~-----s~~~~g~~~~~~~~-------~~~~~~~~~~G~GV~V 81 (620)
+|+|+.-..+.+-...+++.|-++.++++......... .-.-+|+-...|.. ...+++ ...|+||..
T Consensus 145 ~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvta 223 (501)
T KOG1153|consen 145 VFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTA 223 (501)
T ss_pred hhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEE
Confidence 88889888999999999999999999988776543311 11112333222110 011222 237999999
Q ss_pred EEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhhcccC
Q 042484 82 GNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNF 161 (620)
Q Consensus 82 gVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiaag~~ 161 (620)
-|+||||+..||+|.+. ..|-- |. ..-....|++||||||||+|++.
T Consensus 224 Yv~DTGVni~H~dFegR------a~wGa-~i-------------------------~~~~~~~D~nGHGTH~AG~I~sK- 270 (501)
T KOG1153|consen 224 YVLDTGVNIEHPDFEGR------AIWGA-TI-------------------------PPKDGDEDCNGHGTHVAGLIGSK- 270 (501)
T ss_pred EEecccccccccccccc------eeccc-cc-------------------------CCCCcccccCCCcceeeeeeecc-
Confidence 99999999999999863 11111 10 00122468999999999999966
Q ss_pred CCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC---------CCcEEeecH-------HHHH
Q 042484 162 VAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD---------GVDMLSVSL-------VAIG 225 (620)
Q Consensus 162 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~---------gvdVIn~Sl-------~~~~ 225 (620)
.-|||.+++|+++||+.++ |.+..+++++++|++++. +..|.|||+ +..+
T Consensus 271 -------------t~GvAK~s~lvaVKVl~~d-GsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S~aLn~A 336 (501)
T KOG1153|consen 271 -------------TFGVAKNSNLVAVKVLRSD-GSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRSAALNMA 336 (501)
T ss_pred -------------ccccccccceEEEEEeccC-CcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcccHHHHHH
Confidence 3599999999999999999 999999999999999986 466999999 7888
Q ss_pred HHHHHhcCcEEEEecCCCCCCCCcc-CCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeEEEccC
Q 042484 226 SFHAVQHGIVVVCSDGNEGLVDVTL-QNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTFIRTLD 304 (620)
Q Consensus 226 ~~~a~~~Gv~vV~AAGN~G~~~~t~-~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 304 (620)
+.+|.+.|+++++||||+-.+.+.. +..+..+|||||++..
T Consensus 337 V~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~-------------------------------------- 378 (501)
T KOG1153|consen 337 VNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN-------------------------------------- 378 (501)
T ss_pred HHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc--------------------------------------
Confidence 8999999999999999998665544 4457899999996522
Q ss_pred CCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEEeCCc
Q 042484 305 PKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPT 384 (620)
Q Consensus 305 ~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~ 384 (620)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCCceeeccCCCCC--CCCCceee------cCCCcEEeccccchhhhhhhhhhhhcccCCC---------CCHH
Q 042484 385 TEFGAKPAPYMAALSSKGPI--HITPEILK------RRIPFNSISGTSMSGPYISGIAGLPKILHPD---------WSPA 447 (620)
Q Consensus 385 ~~~~~~~~~~~a~FSS~GP~--~~kPdi~a------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~---------~sp~ 447 (620)
+.+|.||.||+. ...|.+.- ....-...||||||+|||||++|..++.+|. .||.
T Consensus 379 --------D~iA~FSN~G~CVdiFAPGv~IlSs~iGs~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~ 450 (501)
T KOG1153|consen 379 --------DTIAFFSNWGKCVDIFAPGVNILSSWIGSNNATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPS 450 (501)
T ss_pred --------cchhhhcCccceeeeecCchhhhhhhhcCccchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChH
Confidence 346677777775 34554433 4456678999999999999999999999883 3888
Q ss_pred HHHHHHHcccc
Q 042484 448 AVQSAIMTTAT 458 (620)
Q Consensus 448 ~ik~~L~~TA~ 458 (620)
++|..|..-..
T Consensus 451 ~lk~~~l~~~~ 461 (501)
T KOG1153|consen 451 ELKKRLLKFKT 461 (501)
T ss_pred Hhhhhhhcccc
Confidence 99887776543
|
|
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=296.66 Aligned_cols=244 Identities=23% Similarity=0.359 Sum_probs=198.4
Q ss_pred CCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCC
Q 042484 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSAR 144 (620)
Q Consensus 65 ~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 144 (620)
+++-+|+.|+||++|+|||.|||+.-.||.|+.- |-+. + |-+ -..-.
T Consensus 189 ~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnv---------KERT----N-------WTN-------------E~tLd 235 (1033)
T KOG4266|consen 189 GADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNV---------KERT----N-------WTN-------------EDTLD 235 (1033)
T ss_pred chhhHHhccccCCceEEEEeecccccCCccccch---------hhhc----C-------CcC-------------ccccc
Confidence 4678999999999999999999999999999841 0000 0 110 11234
Q ss_pred CCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH---
Q 042484 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--- 221 (620)
Q Consensus 145 D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--- 221 (620)
|..||||.|||+|||.. .-.|.||+++|+++|||.+. -..+++..+.||.|||....||+|+|+
T Consensus 236 D~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~-qVSYTSWFLDAFNYAI~~kidvLNLSIGGP 302 (1033)
T KOG4266|consen 236 DNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDA-QVSYTSWFLDAFNYAIATKIDVLNLSIGGP 302 (1033)
T ss_pred cCcccceeEeeeeccch------------hhcccCCccceeEEEeeccc-eeehhhHHHHHHHHHHhhhcceEeeccCCc
Confidence 67899999999999773 36799999999999999888 578999999999999999999999999
Q ss_pred ------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCC--ceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCC
Q 042484 222 ------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAP--RQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPS 293 (620)
Q Consensus 222 ------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap--~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 293 (620)
+-..........|++|.|+||+||-.++..+|+. .||.||...
T Consensus 303 DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGId----------------------------- 353 (1033)
T KOG4266|consen 303 DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGID----------------------------- 353 (1033)
T ss_pred ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecccc-----------------------------
Confidence 3344555668899999999999999999999863 466665421
Q ss_pred CceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccC
Q 042484 294 DKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFT 373 (620)
Q Consensus 294 ~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 373 (620)
T Consensus 354 -------------------------------------------------------------------------------- 353 (1033)
T KOG4266|consen 354 -------------------------------------------------------------------------------- 353 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeCCceeecCCCCCceeeccCCCCC---------CCCCceee---------cCCCcEEeccccchhhhhhhhhh
Q 042484 374 RHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---------HITPEILK---------RRIPFNSISGTSMSGPYISGIAG 435 (620)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---------~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aA 435 (620)
..+.+|.|||||-+ ++||||++ -..+...+||||.|+|.|||+++
T Consensus 354 -----------------fdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~GCr~LSGTSVaSPVVAGav~ 416 (1033)
T KOG4266|consen 354 -----------------FDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVSTGCRSLSGTSVASPVVAGAVC 416 (1033)
T ss_pred -----------------ccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccccchhccCCcccchhhhceee
Confidence 12567899999975 68999998 34567889999999999999999
Q ss_pred hhcc----cCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 436 LPKI----LHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 436 Ll~~----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
||.+ +.--+.|+.+|++|+..|.++... .-|.||+|++|+.++++
T Consensus 417 LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 417 LLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcchhHHHHHH
Confidence 9976 233468999999999999998532 34799999999998875
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-30 Score=277.65 Aligned_cols=214 Identities=23% Similarity=0.268 Sum_probs=162.5
Q ss_pred CCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCC-CCCHHHHHHHHHHHHhCCCcEEeecH----
Q 042484 147 NGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMG-GCYDCDIIAAFDMAIHDGVDMLSVSL---- 221 (620)
Q Consensus 147 ~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~~i~~ai~~a~~~gvdVIn~Sl---- 221 (620)
.-|||||||||+|+..+ .....||||+|+|+.+++.+..-| ..+...+.+|+..+++..+|+||||+
T Consensus 310 g~HGTHVAgIa~anhpe--------~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPE--------TPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCC--------CccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 45999999999999854 245789999999999999775533 24556899999999999999999999
Q ss_pred --------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCC---CCceEEecccccCCcccceEEeCCCeEEEEeeccCCC
Q 042484 222 --------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNA---APRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKG 290 (620)
Q Consensus 222 --------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~---ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 290 (620)
++.......++|+++|+||||+||...|++.| ...||.|||--........
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~------------------ 443 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE------------------ 443 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh------------------
Confidence 45555555689999999999999999998886 3578889883211100000
Q ss_pred CCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeec
Q 042484 291 LPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFF 370 (620)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 370 (620)
| .
T Consensus 444 -----------------------------------------------y-------~------------------------ 445 (1304)
T KOG1114|consen 444 -----------------------------------------------Y-------S------------------------ 445 (1304)
T ss_pred -----------------------------------------------h-------h------------------------
Confidence 0 0
Q ss_pred ccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceeec-----------CCCcEEeccccchhhhhhhhhhh
Q 042484 371 TFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKR-----------RIPFNSISGTSMSGPYISGIAGL 436 (620)
Q Consensus 371 ~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~-----------~~~y~~~sGTSMAaP~VAG~aAL 436 (620)
+..+....+-.+|||||+ -+.--|.|+ -..-..|+|||||+|+++|++||
T Consensus 446 ----------------~~e~vp~~~YtWsSRgP~~DG~lGVsi~APggAiAsVP~~tlq~~qLMNGTSMsSP~acG~IAl 509 (1304)
T KOG1114|consen 446 ----------------VREPVPSNPYTWSSRGPCLDGDLGVSISAPGGAIASVPQYTLQNSQLMNGTSMSSPSACGAIAL 509 (1304)
T ss_pred ----------------hhccCCCCccccccCCCCcCCCcceEEecCCccccCCchhhhhhhhhhCCcccCCccccchHHH
Confidence 000111234568999997 244445552 23346899999999999999999
Q ss_pred hc----ccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 437 PK----ILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 437 l~----~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
|+ |.+-.|||..||.+|++||.++.+ ..+|.||.|++++.+|.+
T Consensus 510 lLSgLKa~ni~ytpysVrrAlenTa~~l~~------------id~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 510 LLSGLKAQNIPYTPYSVRRALENTATKLGD------------IDSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHhcccccCc------------cchhccCcceeehhHHHH
Confidence 75 567799999999999999998853 267999999999999987
|
|
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=246.04 Aligned_cols=154 Identities=27% Similarity=0.347 Sum_probs=113.3
Q ss_pred cEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhhc
Q 042484 79 IIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAG 158 (620)
Q Consensus 79 V~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiaa 158 (620)
|+|+|||+||+++||+|... ........ ++ ...........|..+||||||++|+
T Consensus 1 v~VaiiD~G~~~~~~~~~~~---------~~~~~~~~------------~~----~~~~~~~~~~~~~~~HGt~va~~i~ 55 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGL---------FGGGDGGN------------DD----DDNENGPTDPDDGNGHGTHVAGIIA 55 (241)
T ss_pred CEEEEEeCCCCCCCcchhcc---------ccCccccc------------cc----ccCcCCCCCCCCCCCcHHHHHHHHh
Confidence 68999999999999987210 00000000 00 0000011345578899999999999
Q ss_pred ccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHH-hCCCcEEeecH----------HHHHHH
Q 042484 159 GNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAI-HDGVDMLSVSL----------VAIGSF 227 (620)
Q Consensus 159 g~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~-~~gvdVIn~Sl----------~~~~~~ 227 (620)
+.... ....|+||+++|+.+|+.... +......+++++++++ ..+++|||||| +.....
T Consensus 56 ~~~~~---------~~~~g~a~~a~i~~~~~~~~~-~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~~~~~~~~~~~ 125 (241)
T cd00306 56 ASANN---------GGGVGVAPGAKLIPVKVLDGD-GSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAID 125 (241)
T ss_pred cCCCC---------CCCEEeCCCCEEEEEEEecCC-CCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCCCCHHHHHHHH
Confidence 88633 223899999999999998877 4578889999999999 89999999999 344555
Q ss_pred HHHhc-CcEEEEecCCCCCCCC---ccCCCCCceEEecccccCC
Q 042484 228 HAVQH-GIVVVCSDGNEGLVDV---TLQNAAPRQIVVGASTMDR 267 (620)
Q Consensus 228 ~a~~~-Gv~vV~AAGN~G~~~~---t~~~~ap~vitVga~~~~~ 267 (620)
.+.++ |+++|+|+||.+.... ..+...+++|+||+.+.+.
T Consensus 126 ~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~ 169 (241)
T cd00306 126 YALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG 169 (241)
T ss_pred HHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC
Confidence 66677 9999999999997655 3555679999999976544
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-28 Score=243.32 Aligned_cols=104 Identities=19% Similarity=0.157 Sum_probs=74.4
Q ss_pred CCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHH--HhCCCcEEee
Q 042484 142 SARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMA--IHDGVDMLSV 219 (620)
Q Consensus 142 ~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a--~~~gvdVIn~ 219 (620)
...|+.+|||||||||||.. |++|+++|+..++... ..+.+.++++|+ .+.+++||||
T Consensus 32 ~~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~-----~~~~~~~~i~~~~~~~~gv~VINm 91 (247)
T cd07488 32 RNNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIK-----SNNGQWQECLEAQQNGNNVKIINH 91 (247)
T ss_pred CCCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCC-----CCCccHHHHHHHHHhcCCceEEEe
Confidence 35688999999999999863 4569999987665321 223356677777 6689999999
Q ss_pred cH-----H------------HHHHHHHHhc-CcEEEEecCCCCCCC---CccCC--CCCceEEeccccc
Q 042484 220 SL-----V------------AIGSFHAVQH-GIVVVCSDGNEGLVD---VTLQN--AAPRQIVVGASTM 265 (620)
Q Consensus 220 Sl-----~------------~~~~~~a~~~-Gv~vV~AAGN~G~~~---~t~~~--~ap~vitVga~~~ 265 (620)
|| . ..+...+.++ |+++|+||||+|... ..+.. .++.+|+|||+..
T Consensus 92 S~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~ 160 (247)
T cd07488 92 SYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDR 160 (247)
T ss_pred CCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecC
Confidence 99 1 2233444455 999999999999743 22223 3578999999653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-21 Score=209.74 Aligned_cols=163 Identities=22% Similarity=0.317 Sum_probs=119.2
Q ss_pred Ccccccc--CCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCC-C
Q 042484 66 PNSIWEK--ARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFY-S 142 (620)
Q Consensus 66 ~~~~~~~--~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~ 142 (620)
...+|.. +.+|+||.|+|||+||+..||+|.+..... .++ ...... .
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~~------------------------~~~------~~~~~~~~ 178 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVAG------------------------GDF------VDGDPEPP 178 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhcccccc------------------------ccc------ccCCCCCC
Confidence 3578887 899999999999999999999998641100 011 000111 2
Q ss_pred CCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCC--CcEEeec
Q 042484 143 ARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDG--VDMLSVS 220 (620)
Q Consensus 143 ~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~g--vdVIn~S 220 (620)
..|..+|||||+|++++.... +.....|+||+++++.+|++....|....+++++++++++..+ +++||||
T Consensus 179 ~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s 251 (508)
T COG1404 179 FLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLS 251 (508)
T ss_pred CCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEec
Confidence 568899999999999984211 1244789999999999999986535677788899999999999 9999999
Q ss_pred H-----------HHHHHHHHHhcC-cEEEEecCCCCCCCCc----cCCCC--CceEEeccccc
Q 042484 221 L-----------VAIGSFHAVQHG-IVVVCSDGNEGLVDVT----LQNAA--PRQIVVGASTM 265 (620)
Q Consensus 221 l-----------~~~~~~~a~~~G-v~vV~AAGN~G~~~~t----~~~~a--p~vitVga~~~ 265 (620)
+ +..+...++..| +++|+++||.+..... .+... +.+++|++...
T Consensus 252 ~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~ 314 (508)
T COG1404 252 LGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL 314 (508)
T ss_pred CCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC
Confidence 4 455555666666 9999999999865421 11112 47788888654
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-18 Score=174.08 Aligned_cols=160 Identities=20% Similarity=0.243 Sum_probs=100.7
Q ss_pred CCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCC-
Q 042484 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSA- 143 (620)
Q Consensus 65 ~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~- 143 (620)
++..+|..+++||+|.+||+|.||||-||++..+ + . .+..+ +| ..+++++-|
T Consensus 149 nv~~awa~g~tgknvttaimddgvdymhpdlk~n-y-------n--aeasy------------df-----ssndpfpypr 201 (629)
T KOG3526|consen 149 NVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-Y-------N--AEASY------------DF-----SSNDPFPYPR 201 (629)
T ss_pred cHHHHHhhcccCCCceEEeecCCchhcCcchhcc-c-------C--ceeec------------cc-----ccCCCCCCCc
Confidence 4568999999999999999999999999999732 1 1 00001 11 011111112
Q ss_pred -CC--CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh-CCCcEEee
Q 042484 144 -RD--KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH-DGVDMLSV 219 (620)
Q Consensus 144 -~D--~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~-~gvdVIn~ 219 (620)
.| .+.|||.|||-+++...++ -.-.|||++.++..+|+++. .+..+++.|-...-+ ...+|.+-
T Consensus 202 ytddwfnshgtrcagev~aardng--------icgvgvaydskvagirmldq----pymtdlieansmghep~kihiysa 269 (629)
T KOG3526|consen 202 YTDDWFNSHGTRCAGEVVAARDNG--------ICGVGVAYDSKVAGIRMLDQ----PYMTDLIEANSMGHEPSKIHIYSA 269 (629)
T ss_pred ccchhhhccCccccceeeeeccCC--------ceeeeeeeccccceeeecCC----chhhhhhhhcccCCCCceEEEEec
Confidence 12 4789999999887776432 23469999999999999864 445556555322211 35789999
Q ss_pred cH---------------HHHHHHHHH-----hcCcEEEEecCCCCCCCC---ccCCCCCceEEeccc
Q 042484 220 SL---------------VAIGSFHAV-----QHGIVVVCSDGNEGLVDV---TLQNAAPRQIVVGAS 263 (620)
Q Consensus 220 Sl---------------~~~~~~~a~-----~~Gv~vV~AAGN~G~~~~---t~~~~ap~vitVga~ 263 (620)
|| ...+..+-+ ..|-+.|+|.|..|.+.. .--..+-|.|++-+.
T Consensus 270 swgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsa 336 (629)
T KOG3526|consen 270 SWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSA 336 (629)
T ss_pred ccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehh
Confidence 99 122222222 245699999999884321 111234577776543
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-15 Score=157.37 Aligned_cols=91 Identities=24% Similarity=0.234 Sum_probs=71.4
Q ss_pred ceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC---CCcEEeecH--------------HHHHHHHHHhcCcE
Q 042484 173 GTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD---GVDMLSVSL--------------VAIGSFHAVQHGIV 235 (620)
Q Consensus 173 g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~---gvdVIn~Sl--------------~~~~~~~a~~~Gv~ 235 (620)
....||||+|+|+.|+++.+. ...++.++.+++.+ +++|||+|| +.....+|..+||.
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~-----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV-----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC-----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeE
Confidence 347899999999999997642 34577888888887 999999999 23455667789999
Q ss_pred EEEecCCCCCCCCc-----------cCCCCCceEEecccccCCc
Q 042484 236 VVCSDGNEGLVDVT-----------LQNAAPRQIVVGASTMDRD 268 (620)
Q Consensus 236 vV~AAGN~G~~~~t-----------~~~~ap~vitVga~~~~~~ 268 (620)
||+|+||+|..... .+...|+|++||+++....
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 99999999965432 2334699999999876544
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.3e-10 Score=101.42 Aligned_cols=97 Identities=25% Similarity=0.253 Sum_probs=76.0
Q ss_pred cCCCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCcccC-CCccccEEEeecCCccee-eecccCCCcEE
Q 042484 303 LDPKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGNDHTT-DRHVLPASVITFNDGYYN-LFFTFTRHPVG 378 (620)
Q Consensus 303 ~~~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~-~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~ 378 (620)
+...+++|||+||.| |.+..|..+++++||.|+|++++......... ....+|.+.|+..+|..| +++++ .+
T Consensus 41 ~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~----~~ 116 (143)
T cd02133 41 FEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES----SK 116 (143)
T ss_pred cCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC----CC
Confidence 445679999999999 88999999999999999999988753211111 135689999999999999 99887 44
Q ss_pred EEeCCceeecCCCCCceeeccCCCCC
Q 042484 379 YIKRPTTEFGAKPAPYMAALSSKGPI 404 (620)
Q Consensus 379 ~i~~~~~~~~~~~~~~~a~FSS~GP~ 404 (620)
++.+..+.. ..+.+.++.||||||.
T Consensus 117 ~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 117 KLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred eEEEEeccc-cccCCccccccCcCCC
Confidence 555444444 4567889999999996
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.7e-09 Score=92.77 Aligned_cols=104 Identities=37% Similarity=0.523 Sum_probs=80.9
Q ss_pred EEeCCCeEEEEeeccCCCCCCCceeeEE----------------EccCCCcccccEEEEEe--c-cchhHHHHHHHcCCc
Q 042484 273 VVLGNNKRFKLISERAKGLPSDKLFTFI----------------RTLDPKKVKGKILVCLN--V-RSVDEGLQAALAGAA 333 (620)
Q Consensus 273 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~----------------~~~~~~~~~gkivl~~~--~-~~~~~~~~~~~~ga~ 333 (620)
+++|||+.+.|.+++.+.. ..++++ ..+++.+++||||||++ | .+..+..+++++||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 6789999999999997553 122221 22445789999999999 6 778999999999999
Q ss_pred EEEEecCCCCCCcccCCCccccEEEeecCCccee-eecccCCCcEEE
Q 042484 334 DIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYN-LFFTFTRHPVGY 379 (620)
Q Consensus 334 gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~~ 379 (620)
|+|++++.............+|.+.|+.++|+.| +|+++.++++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999988754333333346899999999999999 999988776554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-06 Score=95.08 Aligned_cols=143 Identities=17% Similarity=0.229 Sum_probs=91.2
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccc-cccCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDY-AVHKGPLNSSFYSAR 144 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~ 144 (620)
....|..+++|+++.++|.|.|++..||+.... +.+.. .| ....+..+..-.+..
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~~~~~-----------------------s~d~~~~~~~p~~~~~~~ 77 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-YDPLG-----------------------SYDVNRHDNDPEPRCDGT 77 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-cCcce-----------------------eEeeecCCCCcccccCCC
Confidence 468999999999999999999999999999742 21110 01 000111222233334
Q ss_pred CCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHH-hCCCcEEeecH--
Q 042484 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAI-HDGVDMLSVSL-- 221 (620)
Q Consensus 145 D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~-~~gvdVIn~Sl-- 221 (620)
....|||-||+-.+..... ..-..|++|++++..++++... .+ +...+..... ..-.|+-+.||
T Consensus 78 ~~~~~g~~Ca~~~a~~~~~--------~~C~vg~~~~~~~~g~~~l~~~---v~--~~~~~~~~~~~~~~~di~scsw~p 144 (431)
T KOG3525|consen 78 NENKHGTRCAGCVAARANN--------LTCGVGVAYNATIGGIRMLAGC---VS--DAVEAPSLGFGPCHIDIYSCSWGP 144 (431)
T ss_pred CccccCCCCCcccccccCC--------CcCCCCcccCccccceeeeeee---cc--cceecccccCCCCCceeecCcCCc
Confidence 5688999999999877521 2346799999999999988643 11 1111211111 12367888888
Q ss_pred -------------HHHHHH-----HHHhcCcEEEEecCCCCC
Q 042484 222 -------------VAIGSF-----HAVQHGIVVVCSDGNEGL 245 (620)
Q Consensus 222 -------------~~~~~~-----~a~~~Gv~vV~AAGN~G~ 245 (620)
...+.. ....+|-+.|++.||.|.
T Consensus 145 ddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~ 186 (431)
T KOG3525|consen 145 DDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGT 186 (431)
T ss_pred ccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccc
Confidence 112222 233678899999999884
|
|
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-06 Score=70.20 Aligned_cols=46 Identities=35% Similarity=0.559 Sum_probs=40.7
Q ss_pred cccceeEEecceeeeEEEEcCHHHHHHHhcCCCeEEEEeceeeeec
Q 042484 3 LAHAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLH 48 (620)
Q Consensus 3 ~~~~~~~~y~~~~~G~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~~ 48 (620)
...++.+.|+..||||++++++++++.|+++|+|++|+|++.++++
T Consensus 37 ~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 37 INAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp TT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred cCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 3678999999999999999999999999999999999999998874
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=92.82 Aligned_cols=84 Identities=21% Similarity=0.200 Sum_probs=49.5
Q ss_pred eeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh---CCCcEEeecH--------------HHHHHHHHHhcCcEE
Q 042484 174 TAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH---DGVDMLSVSL--------------VAIGSFHAVQHGIVV 236 (620)
Q Consensus 174 ~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~---~gvdVIn~Sl--------------~~~~~~~a~~~Gv~v 236 (620)
...-+||+|+|..|-.- . ........|+..-.. ..+..++.|+ +..-...|..+|+.+
T Consensus 287 ~s~A~AP~A~I~lvvap--~---~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi 361 (1174)
T COG4934 287 WSHAMAPKANIDLVVAP--N---PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITI 361 (1174)
T ss_pred hhhccCccCceEEEEcC--C---CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEE
Confidence 35679999999988762 2 222222233222221 1222233333 233345677999999
Q ss_pred EEecCCCCCCCCc------c--CCCCCceEEecc
Q 042484 237 VCSDGNEGLVDVT------L--QNAAPRQIVVGA 262 (620)
Q Consensus 237 V~AAGN~G~~~~t------~--~~~ap~vitVga 262 (620)
++|+|.+|....+ + +..+|+|++||.
T Consensus 362 ~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 362 FAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999999854432 2 223699999997
|
|
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.1e-06 Score=72.78 Aligned_cols=69 Identities=25% Similarity=0.359 Sum_probs=53.5
Q ss_pred ccCCCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCC----CCCcccCCCccccEEEeecCCccee-eec
Q 042484 302 TLDPKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPE----FGNDHTTDRHVLPASVITFNDGYYN-LFF 370 (620)
Q Consensus 302 ~~~~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~----~~~~~~~~~~~~p~~~i~~~~g~~l-~~~ 370 (620)
.+...+++||||||+| |++.+|..+++++||.|+|+++... ...........+|.++|+..+|+.| +|+
T Consensus 26 ~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 26 DYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp HTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred ccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 3457889999999999 8999999999999999999999211 1122234468999999999999888 653
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.6e-06 Score=72.55 Aligned_cols=75 Identities=24% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCc---ccC--CCccccEEEeecCCccee-eecccCCC
Q 042484 304 DPKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGND---HTT--DRHVLPASVITFNDGYYN-LFFTFTRH 375 (620)
Q Consensus 304 ~~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~---~~~--~~~~~p~~~i~~~~g~~l-~~~~~~~~ 375 (620)
+..+++|||+||.| |.+..|..+++++||.++|++|+...... ... ....+|.+.|+..+|+.| +++..+.+
T Consensus 38 ~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~~ 117 (122)
T cd04816 38 DGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAGET 117 (122)
T ss_pred CCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCCCE
Confidence 34578999999999 89999999999999999999988662111 111 345689999999999999 99887755
Q ss_pred cEE
Q 042484 376 PVG 378 (620)
Q Consensus 376 ~~~ 378 (620)
.++
T Consensus 118 v~~ 120 (122)
T cd04816 118 LEL 120 (122)
T ss_pred EEE
Confidence 443
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.1e-05 Score=71.81 Aligned_cols=74 Identities=22% Similarity=0.122 Sum_probs=59.3
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCccc----CCCccccEEEeecCCccee-eecccCCCcEE
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGNDHT----TDRHVLPASVITFNDGYYN-LFFTFTRHPVG 378 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~ 378 (620)
.+++|||+||.| |++..|..+++++||.|+|++++......+. .....+|.+.|+..+|..| +|++.+...++
T Consensus 37 ~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v 116 (118)
T cd04818 37 AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAALAAGGTVTV 116 (118)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHHHHhcCCcEEE
Confidence 458999999999 8889999999999999999998876311111 1235799999999999999 99987765554
Q ss_pred E
Q 042484 379 Y 379 (620)
Q Consensus 379 ~ 379 (620)
+
T Consensus 117 ~ 117 (118)
T cd04818 117 T 117 (118)
T ss_pred e
Confidence 3
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.1e-05 Score=69.68 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=61.0
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCC-C-cc---c---CCCccccEEEeecCCccee-eecccCC
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFG-N-DH---T---TDRHVLPASVITFNDGYYN-LFFTFTR 374 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~-~-~~---~---~~~~~~p~~~i~~~~g~~l-~~~~~~~ 374 (620)
.+++|+|+|++| |+|.+|..+++++||.++|++|+.... . .+ . .....+|.++|+..+|+.| +.+..+.
T Consensus 31 ~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g~ 110 (118)
T cd02127 31 HDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYMIRKTLERLG 110 (118)
T ss_pred cccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHHHHHHHHcCC
Confidence 467899999999 999999999999999999999986531 1 11 1 1235789999999999999 8888887
Q ss_pred CcEEEE
Q 042484 375 HPVGYI 380 (620)
Q Consensus 375 ~~~~~i 380 (620)
.+++.|
T Consensus 111 ~~~~~~ 116 (118)
T cd02127 111 LPYAII 116 (118)
T ss_pred ceEEee
Confidence 776654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.8e-05 Score=70.86 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=59.8
Q ss_pred cCCCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCC-Cccc-----CCCccccEEEeecCCccee-eecccC
Q 042484 303 LDPKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFG-NDHT-----TDRHVLPASVITFNDGYYN-LFFTFT 373 (620)
Q Consensus 303 ~~~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~-~~~~-----~~~~~~p~~~i~~~~g~~l-~~~~~~ 373 (620)
+...+++|||+||.| |.+..|..+++++||.|+|++++.... .... .....+|.+.|+..+|+.| +++.++
T Consensus 40 ~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~~l~~~~~~~ 119 (126)
T cd00538 40 DSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEAG 119 (126)
T ss_pred ccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHHHHHHHHhcC
Confidence 346779999999999 889999999999999999999887521 1111 1345799999999999999 999876
Q ss_pred CCcE
Q 042484 374 RHPV 377 (620)
Q Consensus 374 ~~~~ 377 (620)
.+.+
T Consensus 120 ~~v~ 123 (126)
T cd00538 120 KTVT 123 (126)
T ss_pred CceE
Confidence 5443
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.2e-05 Score=71.54 Aligned_cols=75 Identities=19% Similarity=0.059 Sum_probs=60.4
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCC-cc--c-CCCccccEEEeecCCccee-eecccCCCcE
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGN-DH--T-TDRHVLPASVITFNDGYYN-LFFTFTRHPV 377 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~-~~--~-~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~ 377 (620)
+.++.|+|+|+.| |+|.+|..+++++||.++|+||+...+. .+ . .....+|.++|+..+|+.| ..+..+.+.+
T Consensus 56 ~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l~~~l~~G~~Vt 135 (138)
T cd02122 56 PPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEILELLERGISVT 135 (138)
T ss_pred CccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHHHHHHHcCCcEE
Confidence 3568999999999 9999999999999999999999986221 22 1 1234689999999999999 8888876655
Q ss_pred EE
Q 042484 378 GY 379 (620)
Q Consensus 378 ~~ 379 (620)
++
T Consensus 136 v~ 137 (138)
T cd02122 136 MV 137 (138)
T ss_pred Ee
Confidence 54
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.6e-05 Score=70.06 Aligned_cols=73 Identities=19% Similarity=0.166 Sum_probs=58.0
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCC-----Ccc---c----CCCccccEEEeecCCccee-ee
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFG-----NDH---T----TDRHVLPASVITFNDGYYN-LF 369 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~-----~~~---~----~~~~~~p~~~i~~~~g~~l-~~ 369 (620)
+.+++|||+|++| |+|.+|..+++++||.++|++|+.... ..+ . .....+|.++|+..+|+.| +.
T Consensus 36 ~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~~ 115 (126)
T cd02126 36 AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAA 115 (126)
T ss_pred ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHHH
Confidence 4468999999999 999999999999999999999876531 011 0 1245789999999999999 88
Q ss_pred cccCCCcE
Q 042484 370 FTFTRHPV 377 (620)
Q Consensus 370 ~~~~~~~~ 377 (620)
+..+...+
T Consensus 116 l~~~~~~~ 123 (126)
T cd02126 116 IKEHQNVE 123 (126)
T ss_pred HHhCCceE
Confidence 87765444
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.8e-05 Score=67.83 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=55.0
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCC--ccc--CCCccccEEEeecCCccee-eeccc
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGN--DHT--TDRHVLPASVITFNDGYYN-LFFTF 372 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~--~~~--~~~~~~p~~~i~~~~g~~l-~~~~~ 372 (620)
+.+++|||+|++| |+|..|..+++++||.++|++|+..... ... .....+|.++|+..+|+.| ..+..
T Consensus 40 ~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 40 PGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred ccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHHHHhcc
Confidence 4578999999999 9999999999999999999999875211 111 1346789999999999999 66653
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.8e-05 Score=69.57 Aligned_cols=74 Identities=20% Similarity=0.135 Sum_probs=59.6
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCC---cc-cCCCccccEEEeecCCccee-eecccCCCcEE
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGN---DH-TTDRHVLPASVITFNDGYYN-LFFTFTRHPVG 378 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~---~~-~~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~ 378 (620)
.+++|||+|++| |.+.+|..+++++||.++|++|+...+. .. ......+|.+.|+..+|+.| +.++.+.+.++
T Consensus 41 ~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 41 ASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVAALANGGEVSA 120 (122)
T ss_pred cCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHHHHhcCCcEEE
Confidence 468999999999 9999999999999999999998873221 11 11245799999999999999 88888766554
Q ss_pred E
Q 042484 379 Y 379 (620)
Q Consensus 379 ~ 379 (620)
+
T Consensus 121 ~ 121 (122)
T cd02130 121 N 121 (122)
T ss_pred e
Confidence 3
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.3e-05 Score=70.14 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=55.9
Q ss_pred cCCCcccccEEEEEe--cc-----chhHHHHHHHcCCcEEEEecCCCC-CC---cccCC--CccccEEEeecCCccee-e
Q 042484 303 LDPKKVKGKILVCLN--VR-----SVDEGLQAALAGAADIVLVNLPEF-GN---DHTTD--RHVLPASVITFNDGYYN-L 368 (620)
Q Consensus 303 ~~~~~~~gkivl~~~--~~-----~~~~~~~~~~~ga~gvi~~~~~~~-~~---~~~~~--~~~~p~~~i~~~~g~~l-~ 368 (620)
+.+.+++|||+|++| |. |.+|..+++++||.|+|+||+... +. .+... ...+|.+.|+..+|+.| .
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 345679999999999 88 999999999999999999999731 11 11211 46899999999999999 7
Q ss_pred eccc
Q 042484 369 FFTF 372 (620)
Q Consensus 369 ~~~~ 372 (620)
.+..
T Consensus 130 ~l~~ 133 (139)
T cd04817 130 ALGQ 133 (139)
T ss_pred HhcC
Confidence 6643
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.4e-05 Score=69.27 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=58.6
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCccc------CCCccccEEEeecCCccee-eecccCCCc
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGNDHT------TDRHVLPASVITFNDGYYN-LFFTFTRHP 376 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~~l-~~~~~~~~~ 376 (620)
.+++|+|+|++| |+|.+|..+++++||.++|+||+........ .....+|.+.|+..+|+.| +.+..+...
T Consensus 56 ~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~V 135 (139)
T cd02132 56 SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGKKV 135 (139)
T ss_pred cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCCcE
Confidence 478999999999 9999999999999999999998765211111 1135789999999999999 888876654
Q ss_pred EE
Q 042484 377 VG 378 (620)
Q Consensus 377 ~~ 378 (620)
++
T Consensus 136 tv 137 (139)
T cd02132 136 EV 137 (139)
T ss_pred EE
Confidence 43
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.53 E-value=9.8e-05 Score=66.33 Aligned_cols=73 Identities=16% Similarity=0.003 Sum_probs=57.8
Q ss_pred cccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCc-c----------cCCCccccEEEeecCCccee-eeccc
Q 042484 307 KVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGND-H----------TTDRHVLPASVITFNDGYYN-LFFTF 372 (620)
Q Consensus 307 ~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~-~----------~~~~~~~p~~~i~~~~g~~l-~~~~~ 372 (620)
...++|+|++| |.|..|..+++++||.++|++|+.+.... . ......+|.++|+..+|+.| ..+..
T Consensus 40 ~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~ 119 (127)
T cd02125 40 GRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISN 119 (127)
T ss_pred CCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhc
Confidence 36789999999 99999999999999999999998653111 0 11234689999999999999 88887
Q ss_pred CCCcEEE
Q 042484 373 TRHPVGY 379 (620)
Q Consensus 373 ~~~~~~~ 379 (620)
+...+++
T Consensus 120 g~~V~v~ 126 (127)
T cd02125 120 GEMVVIK 126 (127)
T ss_pred CCeEEEe
Confidence 7655443
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00018 Score=63.59 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=55.3
Q ss_pred cCCCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCc--cc----CCCccccEEEeecCCccee-eeccc
Q 042484 303 LDPKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGND--HT----TDRHVLPASVITFNDGYYN-LFFTF 372 (620)
Q Consensus 303 ~~~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~--~~----~~~~~~p~~~i~~~~g~~l-~~~~~ 372 (620)
++..+++|||+|+.| |+|.+|..+++++||.++|++|+...... .. .....+|.+.|+.++++.| .++..
T Consensus 33 ~~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 33 QEHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred CCcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 356778999999999 99999999999999999999987753111 11 2335789999999999888 65543
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=58.21 Aligned_cols=75 Identities=20% Similarity=0.369 Sum_probs=48.8
Q ss_pred EEeeccCceEEEEEEEEEcCC-CceEEEEEeCC--------CCe-----------EEEEecceEEEeeCCeEEEEEEEEE
Q 042484 544 ITVPKLSGSITVTRRVKNVGS-PGTYQARVKTP--------QGV-----------SVTMAPKSLKFINVGEEKSFKVNIK 603 (620)
Q Consensus 544 i~~~~~~~~~~~~rtv~n~~~-~~ty~~~~~~~--------~g~-----------~v~v~p~~l~~~~~g~~~~~~v~~~ 603 (620)
|++.+.....+++++|+|.|+ +.+|++++... .|. .+...|..|++ ++|++++++|+|+
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 345555567899999999999 99999987610 111 56778889999 9999999999999
Q ss_pred Eccc--cCCCCeEEEEEE
Q 042484 604 AKNA--SVTKDYVFGELI 619 (620)
Q Consensus 604 ~~~~--~~~~~~~~g~~~ 619 (620)
.+++ .....+..|.|.
T Consensus 80 ~p~~~~~~~~~~~eG~I~ 97 (112)
T PF06280_consen 80 PPSGLDASNGPFYEGFIT 97 (112)
T ss_dssp --GGGHHTT-EEEEEEEE
T ss_pred ehhcCCcccCCEEEEEEE
Confidence 9652 234678888764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=59.50 Aligned_cols=71 Identities=25% Similarity=0.184 Sum_probs=55.9
Q ss_pred cCCCcccccEEEEEe--c--cchhHHHHHHHcCCcEEEEecCCCCCCcc-----c--CCCccccEEEeecCCccee-eec
Q 042484 303 LDPKKVKGKILVCLN--V--RSVDEGLQAALAGAADIVLVNLPEFGNDH-----T--TDRHVLPASVITFNDGYYN-LFF 370 (620)
Q Consensus 303 ~~~~~~~gkivl~~~--~--~~~~~~~~~~~~ga~gvi~~~~~~~~~~~-----~--~~~~~~p~~~i~~~~g~~l-~~~ 370 (620)
+...+++|||+|+.+ + .+..|..++.++||.|+|++++....... . .....+|.+.|+.++|+.| +.+
T Consensus 38 ~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l 117 (127)
T cd04819 38 FDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVA 117 (127)
T ss_pred cCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHH
Confidence 345679999999999 6 67899999999999999999876532110 1 1235799999999999999 877
Q ss_pred ccC
Q 042484 371 TFT 373 (620)
Q Consensus 371 ~~~ 373 (620)
+.+
T Consensus 118 ~~g 120 (127)
T cd04819 118 ERN 120 (127)
T ss_pred hcC
Confidence 764
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00036 Score=62.87 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=54.1
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCc-ccCCCccccEEEeecCCccee-eecccCCCcEE
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGND-HTTDRHVLPASVITFNDGYYN-LFFTFTRHPVG 378 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~-~~~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~ 378 (620)
.+++|||+|++| |.+.+|..+++++||.++|+||+.+.... .......+|.+.+ ..+|+.| +.++.+...++
T Consensus 52 ~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 52 PDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred ccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHHhcCCeEEE
Confidence 368999999999 99999999999999999999988753221 1222334566656 8899999 88876654443
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00041 Score=64.51 Aligned_cols=70 Identities=10% Similarity=0.036 Sum_probs=57.1
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCC-cccC-----CCccccEEEeecCCccee-eecccCCC
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGN-DHTT-----DRHVLPASVITFNDGYYN-LFFTFTRH 375 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~-~~~~-----~~~~~p~~~i~~~~g~~l-~~~~~~~~ 375 (620)
....|+|+|++| |+|.+|..+++++||.++|++|+..... .... ....+|.++|+..+|+.| .++...+.
T Consensus 64 ~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 64 NASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred ccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 678899999999 9999999999999999999999865311 1111 245899999999999999 88776544
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0028 Score=57.63 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCCcccccEEEEEe--c------cchhH-------HHHHHHcCCcEEEEecCCCC-------CCccc-CCCccccEEEee
Q 042484 304 DPKKVKGKILVCLN--V------RSVDE-------GLQAALAGAADIVLVNLPEF-------GNDHT-TDRHVLPASVIT 360 (620)
Q Consensus 304 ~~~~~~gkivl~~~--~------~~~~~-------~~~~~~~ga~gvi~~~~~~~-------~~~~~-~~~~~~p~~~i~ 360 (620)
+..+++|||+++.+ | .+..| ...++++||.++|+++.... +.... .....+|.+.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999999 8 88887 69999999999999986421 11111 123469999999
Q ss_pred cCCccee-eecccCCCcE
Q 042484 361 FNDGYYN-LFFTFTRHPV 377 (620)
Q Consensus 361 ~~~g~~l-~~~~~~~~~~ 377 (620)
.+++..| +.++.+..+.
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 9999999 7777665443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.025 Score=46.14 Aligned_cols=64 Identities=22% Similarity=0.364 Sum_probs=40.8
Q ss_pred ceEEEEEEEEEcCC--CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEccccCCCCeE
Q 042484 551 GSITVTRRVKNVGS--PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKNASVTKDYV 614 (620)
Q Consensus 551 ~~~~~~rtv~n~~~--~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~ 614 (620)
...+++++|+|.+. ....++++..|.|-++...|.++.--++|++++++++++.+.++..+.|.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 57889999999997 46688889999998877888877533899999999999998645555554
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.24 Score=42.31 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=48.3
Q ss_pred ccCCCeEEeeccCceEEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 538 NFNYPSITVPKLSGSITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 538 ~ln~psi~~~~~~~~~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
.|++..+.++ ...+.+++|+|.+. +..|++.......-.++++|..-.+ .||++.+++|+|....
T Consensus 10 ~ldFG~v~~g---~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~ 75 (102)
T PF14874_consen 10 ELDFGNVFVG---QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK 75 (102)
T ss_pred EEEeeEEccC---CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC
Confidence 4555544433 46778889999999 9999987654234457778877777 8999999999999543
|
|
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.069 Score=50.82 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=34.0
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCC
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLP 341 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~ 341 (620)
..+++|||+|+.+ |.+..|..+++++||+|+|+|++.
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp 89 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDP 89 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCH
Confidence 4578999999999 888999999999999999999875
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.18 Score=54.01 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=62.3
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCC------CCCcccCCCccccEEEeecCCccee-eecccCCC
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPE------FGNDHTTDRHVLPASVITFNDGYYN-LFFTFTRH 375 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~------~~~~~~~~~~~~p~~~i~~~~g~~l-~~~~~~~~ 375 (620)
....++|+++..| |.|.+|...++++||.++++.|+.. .+.........+|..+|++.+++.+ .....+++
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 4568899999999 9999999999999999999999954 1223334567899999999999999 66666666
Q ss_pred cEEEEeC
Q 042484 376 PVGYIKR 382 (620)
Q Consensus 376 ~~~~i~~ 382 (620)
.++.+..
T Consensus 171 V~~~lYa 177 (541)
T KOG2442|consen 171 VELALYA 177 (541)
T ss_pred EEEEEEC
Confidence 6665543
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=92.62 E-value=1 Score=39.66 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=39.4
Q ss_pred eEEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 552 SITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 552 ~~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
...+++.|+|.+. +.+|.++++.++++++......+++ ++|++.++.|.+..+.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 4568899999999 9999999999889998555588999 8999999999999976
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.2 Score=45.89 Aligned_cols=37 Identities=16% Similarity=0.016 Sum_probs=33.5
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCC
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPE 342 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~ 342 (620)
-+++|||+|+.+ ..+..|..++++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 569999999999 6788999999999999999998854
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.25 Score=45.14 Aligned_cols=40 Identities=33% Similarity=0.326 Sum_probs=33.6
Q ss_pred cCCCcccccEEEEEe--c------------------cchhHHHHHHHcCCcEEEEecCCC
Q 042484 303 LDPKKVKGKILVCLN--V------------------RSVDEGLQAALAGAADIVLVNLPE 342 (620)
Q Consensus 303 ~~~~~~~gkivl~~~--~------------------~~~~~~~~~~~~ga~gvi~~~~~~ 342 (620)
+...+++|||||+.+ | .+..|...+.++||.|+|++++..
T Consensus 41 Yag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 41 YAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred cCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 445689999999987 3 356799999999999999999865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.35 Score=43.92 Aligned_cols=39 Identities=36% Similarity=0.444 Sum_probs=33.1
Q ss_pred CCCcccccEEEEEe--cc------------chhHHHHHHHcCCcEEEEecCCC
Q 042484 304 DPKKVKGKILVCLN--VR------------SVDEGLQAALAGAADIVLVNLPE 342 (620)
Q Consensus 304 ~~~~~~gkivl~~~--~~------------~~~~~~~~~~~ga~gvi~~~~~~ 342 (620)
...+++|||||+.+ |. +..|..++.++||.|+|++++..
T Consensus 44 ~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 44 AGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred cCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 45689999999998 32 55799999999999999999854
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=89.03 E-value=0.49 Score=46.60 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=33.3
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCC
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPE 342 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~ 342 (620)
.-+++|||||+.+ +.+..|..+++++||.|+|++++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 4579999999988 5667899999999999999998754
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.69 Score=42.75 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=32.4
Q ss_pred CCCcccccEEEEEe--------------------ccchhHHHHHHHcCCcEEEEecCCC
Q 042484 304 DPKKVKGKILVCLN--------------------VRSVDEGLQAALAGAADIVLVNLPE 342 (620)
Q Consensus 304 ~~~~~~gkivl~~~--------------------~~~~~~~~~~~~~ga~gvi~~~~~~ 342 (620)
...+++|||||+.+ |.+..|..++.+.||.|||++++..
T Consensus 42 ~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~ 100 (151)
T cd04822 42 AGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPN 100 (151)
T ss_pred cCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCc
Confidence 35679999999965 2456799999999999999999864
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=87.21 E-value=8.4 Score=34.21 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=49.2
Q ss_pred CceEEEEEEEEEcCC-CceEEEEEeC----CCCe--------------E------EEEecceEEEeeCCeEEEEEEEEEE
Q 042484 550 SGSITVTRRVKNVGS-PGTYQARVKT----PQGV--------------S------VTMAPKSLKFINVGEEKSFKVNIKA 604 (620)
Q Consensus 550 ~~~~~~~rtv~n~~~-~~ty~~~~~~----~~g~--------------~------v~v~p~~l~~~~~g~~~~~~v~~~~ 604 (620)
+...+++++|+|.++ +.+|.+.+.. ..|+ . +++ |..+++ +++|+++++++++.
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKM 103 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEc
Confidence 467889999999999 9999988642 1111 0 112 445888 99999999999999
Q ss_pred ccccCCCCeEEEEEE
Q 042484 605 KNASVTKDYVFGELI 619 (620)
Q Consensus 605 ~~~~~~~~~~~g~~~ 619 (620)
+. ..-.+-+.|.|.
T Consensus 104 P~-~~f~G~ilGGi~ 117 (121)
T PF06030_consen 104 PK-KAFDGIILGGIY 117 (121)
T ss_pred CC-CCcCCEEEeeEE
Confidence 87 555777777663
|
|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.17 E-value=2 Score=39.27 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=58.9
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCcc----------cCCCccccEEEeecCCccee-eecc
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGNDH----------TTDRHVLPASVITFNDGYYN-LFFT 371 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~----------~~~~~~~p~~~i~~~~g~~l-~~~~ 371 (620)
.-...+.|.|.+| |+|..|..+++++||..+|+.++....... ..+...+|++.+-..+|..+ ..++
T Consensus 83 ~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~sL~ 162 (193)
T KOG3920|consen 83 EIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVSLK 162 (193)
T ss_pred cccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehhHH
Confidence 3456789999999 999999999999999999998876532221 12457899999999999888 6666
Q ss_pred cCCCcEEEEeC
Q 042484 372 FTRHPVGYIKR 382 (620)
Q Consensus 372 ~~~~~~~~i~~ 382 (620)
.-.-+.+.|+-
T Consensus 163 r~~r~ha~i~I 173 (193)
T KOG3920|consen 163 RYFRDHAKIDI 173 (193)
T ss_pred HhCCccEEEec
Confidence 55555454443
|
|
| >PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.60 E-value=9 Score=34.76 Aligned_cols=66 Identities=14% Similarity=0.250 Sum_probs=48.9
Q ss_pred eEEEEEEEEEcCC--CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEccccCCCCeEEEEEEC
Q 042484 552 SITVTRRVKNVGS--PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKNASVTKDYVFGELIW 620 (620)
Q Consensus 552 ~~~~~rtv~n~~~--~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~g~~~w 620 (620)
...+...+-|-.+ =..-.+...+-..+.+-=.|..+++ .|++.++++.+++..+ ...+.+||.++|
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS--tetGvIfG~I~Y 137 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS--TETGVIFGNIVY 137 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe--ccCCEEEEEEEE
Confidence 4445555666654 2333344445567787778999999 9999999999999975 889999999985
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat |
| >PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm | Back alignment and domain information |
|---|
Probab=85.30 E-value=4.9 Score=34.44 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=40.8
Q ss_pred ceEEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 551 GSITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
......++|+|.++ ...|++....|.. ..|.|..-.+ .||++.++.|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEecc
Confidence 45677889999999 9999999888876 4567999888 8999999999998843
|
These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A .... |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.26 E-value=2.4 Score=45.63 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=53.4
Q ss_pred ceEEEEEEEEEcCC--CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEccccCCCCeE
Q 042484 551 GSITVTRRVKNVGS--PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKNASVTKDYV 614 (620)
Q Consensus 551 ~~~~~~rtv~n~~~--~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~ 614 (620)
...+....+.|.|+ =..-.+++..|.|-++.|+|..+-.-+||++.++++|++++.++.++.|.
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~ 462 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYR 462 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEE
Confidence 56788889999998 44567888999999999999876444999999999999998767777764
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.18 E-value=0.56 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCCCCCcEEEEeccccCCCCcCcC
Q 042484 73 ARYGEDIIIGNLDTGVWRESKSFG 96 (620)
Q Consensus 73 ~~~G~GV~VgVIDTGId~~Hp~f~ 96 (620)
.+.|+||+|||+|||+|+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 579999999999999999999886
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.81 E-value=8.5 Score=41.61 Aligned_cols=64 Identities=20% Similarity=0.366 Sum_probs=51.2
Q ss_pred ceEEEEEEEEEcCC-CceEEEEEe-CCCCeEEEEec-----ceEEEeeCCeEEEEEEEEEEccccCCCCeEE
Q 042484 551 GSITVTRRVKNVGS-PGTYQARVK-TPQGVSVTMAP-----KSLKFINVGEEKSFKVNIKAKNASVTKDYVF 615 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~~ty~~~~~-~~~g~~v~v~p-----~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~ 615 (620)
.+..+++++.|.+. +.+|.+.+. .|++-+..+.- .++.+ ++||++.|+|.+.++..+..+.|-+
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~pG~Ynv 354 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNATPGTYNV 354 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCCCCceeE
Confidence 35688999999999 999999998 78877766543 34666 8999999999999976566676654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 620 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 4e-92 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 2e-73 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 5e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 527 bits (1358), Expect = 0.0
Identities = 214/632 (33%), Positives = 314/632 (49%), Gaps = 88/632 (13%)
Query: 49 TTHSWEFLGLEQNGRIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWK 108
TT SW+FLG P ++ +++ +I++G LDTG+W ES SF DEGF P P KWK
Sbjct: 1 TTRSWDFLGF-------PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 109 GICQNDKDARFHCNRYFNQDYAVHKGPLNSS--FYSARDKNGHGSHTLSRAGGNFVAGAS 166
G C+ + F CNR + H G S RD NGHG+HT S A G V+ A+
Sbjct: 54 GTCETSNN--FRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQAN 111
Query: 167 VFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----- 221
++G G GTA+GG P AR+A YK CW+ GC D DI+AA+D AI DGVD++S+S+
Sbjct: 112 LYGLGLGTARGGVPLARIAAYKVCWN--DGCSDTDILAAYDDAIADGVDIISLSVGGANP 169
Query: 222 -------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVV 274
+AIGSFHAV+ GI+ S GN G T + +P + V ASTMDR V
Sbjct: 170 RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQ 229
Query: 275 LGNNKRFKLISERAKGLPSDKLFTFI-----------------RTLDPKKVKGKILVCLN 317
+GN + F+ +S L + ++++P +KGKI+VC
Sbjct: 230 IGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEA 289
Query: 318 VRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFF-TFTRHP 376
E ++ GAA +++ + D + LP+SV+ ND L + R P
Sbjct: 290 SFGPHEFFKSL-DGAAGVLMTS----NTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSP 344
Query: 377 VGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK------------------------ 412
I +T AP + + SS+GP T +++K
Sbjct: 345 GATIF-KSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIR 403
Query: 413 RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASF 472
R FN ISGTSMS P+I+GIA K +P WSPAA++SA+MTTA+ + +
Sbjct: 404 RNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNP------ 457
Query: 473 TEATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKN 532
F+YG+GHV P A+ PGLVY +DY+ FLC GYN + + + + N
Sbjct: 458 --QAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGN 515
Query: 533 AIILVNFNYPSITV---PKLSGSITVTRRVKNVGSP-GTYQARVKTPQGVSVTMAPKSLK 588
+ + NYPS + P + + R + +V TY+A + PQG+++++ P L
Sbjct: 516 TGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLS 575
Query: 589 FINVGEEKSFKVNIKAKNASVTKDYVFGELIW 620
F +G+ KSF + ++ + V L+W
Sbjct: 576 FNGLGDRKSFTLTVRGS---IKGFVVSASLVW 604
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 524 bits (1350), Expect = e-180
Identities = 194/641 (30%), Positives = 302/641 (47%), Gaps = 83/641 (12%)
Query: 49 TTHSWEFLGLEQNGRIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWK 108
TTH+ +FL L P + +W + G+D+I+ LD+G+W ES SF D+G IP +WK
Sbjct: 1 TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 109 GICQNDKDA-RFHCN------RYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNF 161
GIC+ CN YFN+ + +N + SARD +GHG+H S GNF
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNF 115
Query: 162 VAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL 221
G S FG+ GTA+G +P+AR+A YK ++ G + D+IAA D A+ DGVDM+S+S
Sbjct: 116 AKGVSHFGYAPGTARGVAPRARLAVYKFSFN--EGTFTSDLIAAMDQAVADGVDMISISY 173
Query: 222 -----------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLS 270
++I SF A+ G++V S GN G +L N +P + V + DR +
Sbjct: 174 GYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFA 233
Query: 271 NYVVLGNNKRFKLISERAKGLPSDKLFTFI------------RTLDPKKVKGKILVCL-N 317
+ LGN + + S + I + + I++C N
Sbjct: 234 GTLTLGNGLKIRGWSL-FPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDN 292
Query: 318 VRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNL-FFTFTRHP 376
D+ A + ++ E + P V+ +G + + + P
Sbjct: 293 GDFSDQMRIITRARLKAAIFIS--EDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTP 350
Query: 377 VGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK------------------------ 412
I T KPAP +AA S++GP I K
Sbjct: 351 TATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIG 410
Query: 413 ----RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQIL 468
+ SGTSM+ P+ +GIA + K HP+WSP+A++SA+MTTA DN ++ I
Sbjct: 411 TNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIK 470
Query: 469 DASFTE-ATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFS-TNCT 526
D+ + ATP GAGHV PN A+DPGLVY T DY+N LC+L + + + ++ +
Sbjct: 471 DSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSAS 530
Query: 527 YTCPKNAIILVNFNYPS-ITVPKLSGSI-----TVTRRVKNVGSP-GTYQARVKTPQGVS 579
+ C + + NYPS I + + G+ R V NVG TY+A++K P+ +
Sbjct: 531 HNCSNPS---ADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNST 587
Query: 580 VTMAPKSLKFINVGEEKSFKVNIKAKNASVTKDYVFGELIW 620
++++P+ L F N E++S+ + I+ + G + W
Sbjct: 588 ISVSPQILVFKNKNEKQSYTLTIRYI-GDEGQSRNVGSITW 627
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 353 bits (908), Expect = e-111
Identities = 95/601 (15%), Positives = 178/601 (29%), Gaps = 92/601 (15%)
Query: 67 NSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDAR-FHCNRYF 125
++ EKA G ++ +D G + +++ + K + K +
Sbjct: 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWV 66
Query: 126 NQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVA 185
N A + HG+H GN A +G P+A++
Sbjct: 67 NDKVAYYHDYSKD--GKTAVDQEHGTHVSGILSGN----APSETKEPYRLEGAMPEAQLL 120
Query: 186 GYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL-------------VAIGSFHAVQH 232
+ Y + A AI+ G ++++S +A
Sbjct: 121 LMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSK 180
Query: 233 GIVVVCSDGNEGLVDVTLQ---------------NAAPRQIVVGASTMDRDLSNYVVLGN 277
G+ +V S GN+ + AA + V + + D+ L+ V +
Sbjct: 181 GVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKT 240
Query: 278 NKRFKLIS--------ERAKGLPSDKLFTFIRTLDPKKVKGKILVCL--NVRSVDEGLQA 327
+ E K + D K VKGKI + ++ D+ +A
Sbjct: 241 ADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIAKA 300
Query: 328 ALAGAADIVLVNLPEFGND-HTTDRHVLPASVITFNDGYY---NLFFTFTRHPVGYIKRP 383
AGA +++ + + G + +PA+ I+ DG N T T
Sbjct: 301 KKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKTIT------FNAT 354
Query: 384 TTEFGAKPAPYMAALSSKGPIHITPEILKRRI--------------PFNSISGTSMSGPY 429
++ SS G +K I + +SGTSMS P
Sbjct: 355 PKVLPTASGTKLSRFSSWGL--TADGNIKPDIAAPGQDILSSVANNKYAKLSGTSMSAPL 412
Query: 430 ISGIAGLPKILHPDWSPAA--------VQSAIMTTATTQDNKKQQILDASFTEATPFSYG 481
++GI GL + + P + +M++AT + + +P G
Sbjct: 413 VAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYD------EDEKAYFSPRQQG 466
Query: 482 AGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNAIILVNFNY 541
AG V A + +T D + L + + + + +
Sbjct: 467 AGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFEV---TVNVHNKSDKPQELYYQA 521
Query: 542 PSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVN 601
T + +V S + VT+ + +F +
Sbjct: 522 TVQTDKVDGKHFALAPKVLYETSWQKI--TIPANSSKQVTVPIDASRFSKDLLAQMKNGY 579
Query: 602 I 602
Sbjct: 580 F 580
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 59/287 (20%), Positives = 97/287 (33%), Gaps = 68/287 (23%)
Query: 13 RHINGFAAKLADAVAAEMAKHPKVVSVFLSK-------EKKLHTTHSWEFLGLEQN-GRI 64
I A K+ +A ++ ++ + E GL+++ ++
Sbjct: 67 HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQV 126
Query: 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRY 124
++W G I IG +DTG+ + G W
Sbjct: 127 MATNMWNLGYDGSGITIGIIDTGIDASHPDLQGKVIG-----WVDFVNGKTTPY------ 175
Query: 125 FNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAG--ASVFGFGKGTAKGGSPKA 182
D NGHG+H VA A G KG +P A
Sbjct: 176 --------------------DDNGHGTH---------VASIAAGTGAASNGKYKGMAPGA 206
Query: 183 RVAGYKACWDGMGGCYDCDIIAAFDMAI----HDGVDMLSVSLVAIGSFH---------- 228
++ G K +G G DII D A+ G+ ++++SL + S
Sbjct: 207 KLVGIKVL-NGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVN 265
Query: 229 -AVQHGIVVVCSDGNEGLVDVTLQN--AAPRQIVVGASTMDRDLSNY 272
A G+VVV + GN G T+ + AA + I VGA ++++
Sbjct: 266 NAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDVITDF 312
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
+ + GT+M+ P+++GIA L HP W+P V++A++ TA E
Sbjct: 352 YTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETAD----------IVKPDEIA 401
Query: 477 PFSYGAGHVQPNLAMDPG 494
+YGAG V A
Sbjct: 402 DIAYGAGRVNAYKAAYYD 419
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 1e-12
Identities = 30/181 (16%), Positives = 65/181 (35%), Gaps = 22/181 (12%)
Query: 417 FNSISGTSMSGPYISGIAGL----PKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASF 472
++GTSM+ P+++G L K + ++SP +++ AI TAT
Sbjct: 455 SQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT------------KL 502
Query: 473 TEATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKN 532
PF+ G G + A + + + ++ L F +G N + + +
Sbjct: 503 GYVDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADK-GIHLRQGVQRNSID 561
Query: 533 AIILVNFNYPSITVPKLSGSITVTRRVKNVGSP-----GTYQARVKTPQGVSVTMAPKSL 587
+ + + + R+ + S G + + ++V + P L
Sbjct: 562 YNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTGL 621
Query: 588 K 588
+
Sbjct: 622 Q 622
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 7e-08
Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 31/142 (21%)
Query: 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKAC-WDGMGGCYDCDII 203
+ HG+H S A GN + G +P A++ ++
Sbjct: 268 MSSPHGTHVSSIASGN--------HSSRDVD-GVAPNAKIVSMTIGDGRLGSMETGTALV 318
Query: 204 AAFDMAI-----HDGVDMLSVSLVAIGSFH------------AVQHGIVVVCSDGNEGLV 246
A + +D++++S ++ ++G+V V S GN G
Sbjct: 319 RAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPA 378
Query: 247 DVTLQN----AAPRQIVVGAST 264
T+ + P I VGA
Sbjct: 379 LCTVGTPPDISQPSLIGVGAYV 400
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 44/243 (18%)
Query: 57 GLEQNGRIPPNSIWEKARYGEDIIIGNLDTGVWR----ESKSFGDEGFGPIPSKWKGICQ 112
+ + +W+ G+++++ +DTG+ + G+ I + +
Sbjct: 12 HYFDRYGVKADKVWDMGFTGQNVVVAVVDTGILHHRDLNANVLP--GYDFISNSQISLDG 69
Query: 113 NDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAG--ASVFGF 170
+ +DA + ++A P D + HGSH VAG A+V
Sbjct: 70 DGRDADPFDEGDWFDNWACGGRPDPRK--ERSDSSWHGSH---------VAGTIAAVTNN 118
Query: 171 GKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAI----------HDGVDMLSVS 220
G A G + A+V +A G G YD DI A + ++++S
Sbjct: 119 RIGVA-GVAYGAKVVPVRAL--GRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMS 175
Query: 221 LVAIGSF---------HAVQHGIVVVCSDGNEGLVDVTLQN--AAPRQIVVGASTMDRDL 269
L + G A + G +VV + GNE + + + + VGA+T
Sbjct: 176 LGSDGQCSYNAQTMIDRATRLGALVVVAAGNEN-QNASNTWPTSCNNVLSVGATTSRGIR 234
Query: 270 SNY 272
+++
Sbjct: 235 ASF 237
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 8e-06
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 417 FNSISGTSMSGPYISGIAGL----PKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASF 472
++ ++GTSM+ P++SG+A L ++ + +PA ++ +++T + F
Sbjct: 269 YSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTS------------PF 316
Query: 473 TEATPFSYGAGHVQPNLAMD 492
+ G+G V A++
Sbjct: 317 NGRLDRALGSGIVDAEAAVN 336
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 56/302 (18%), Positives = 88/302 (29%), Gaps = 80/302 (26%)
Query: 13 RHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNG--------RI 64
+ I + ++ K P V V + L SW G Q R+
Sbjct: 31 KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERV 90
Query: 65 PPNSIWEKARY-GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNR 123
S+W I + LDTGV + +
Sbjct: 91 KAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAA-------NIAWC-------------- 129
Query: 124 YFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAG--ASVFGFGKGTAKGGSPK 181
+ +G +++ D+NGHG+H V G A++ G G +P
Sbjct: 130 -----VSTLRGKVSTKLRDCADQNGHGTH---------VIGTIAAL-NNDIGVV-GVAPG 173
Query: 182 ARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSLVAIGSFH------------- 228
++ + D G DI + AI + I +
Sbjct: 174 VQIYSVRVL-DARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSL 232
Query: 229 ---------------AVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDL---S 270
A GIV+V + GNEG + A P I VGA + ++ S
Sbjct: 233 GGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFS 292
Query: 271 NY 272
N
Sbjct: 293 NR 294
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
+ ++ GT+M+ P++SG+ L + + + + K + A
Sbjct: 314 YETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDIS-----KNTVRGILHITAD 368
Query: 477 PF-------SYGAGHVQPNLAMD 492
YG G V+ LA+
Sbjct: 369 DLGPTGWDADYGYGVVRAALAVQ 391
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 2e-11
Identities = 45/295 (15%), Positives = 80/295 (27%), Gaps = 74/295 (25%)
Query: 7 IFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTH-SWEFLGLEQ-NGRI 64
I + + + GF K++ + K P V + ++ + W LE+
Sbjct: 111 ILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI--EEDSSVFAQSIPW---NLERITPPR 165
Query: 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNR- 123
++ G + + LDT + + + R
Sbjct: 166 YRADEYQPPDGGSLVEVYLLDTSIQSDHREIE-------------------------GRV 200
Query: 124 YFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKAR 183
V + A + HG+H AG V G AK A
Sbjct: 201 MVTDFENVPEEDGTRFHRQASKCDSHGTHL---AG---VVSGRDA----GVAK----GAS 246
Query: 184 VAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSLVA---IGSFH----------AV 230
+ + + G + + + LV + +
Sbjct: 247 MRSLRVL-NCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQRLA 305
Query: 231 QHGIVVVCSDGNEGLVDVTLQNA-------APRQIVVGASTMDRDLSNYVVLGNN 278
+ G+V+V + GN +A AP I VGA+ LG N
Sbjct: 306 RAGVVLVTAAGNFR------DDACLYSPASAPEVITVGATNAQDQPVTLGTLGTN 354
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
F S SGTS + +++GIA + P+ + A ++ ++ +
Sbjct: 379 FVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAK 421
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 3e-11
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 21/142 (14%)
Query: 142 SARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCD 201
S +D NGHG+H AG A G G +P A + K G
Sbjct: 55 STQDGNGHGTHV---AG---TIAAL--NNSIGVL-GVAPSAELYAVKVL-GASGSGSVSS 104
Query: 202 IIAAFDMAIHDGVDMLSVSLVAIGSF--------HAVQHGIVVVCSDGNEGLVDVTLQNA 253
I + A ++G+ + ++SL + A G++VV + GN G ++
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPAR 164
Query: 254 APRQIVVGASTMDRDL---SNY 272
+ VGA+ + + S Y
Sbjct: 165 YANAMAVGATDQNNNRASFSQY 186
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 8e-09
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 14/74 (18%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
+ S++GTSM+ P+++G A L K +P WS +++ + TAT+ +
Sbjct: 208 YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL--------------GS 253
Query: 477 PFSYGAGHVQPNLA 490
YG+G V A
Sbjct: 254 TNLYGSGLVNAEAA 267
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 4e-11
Identities = 40/144 (27%), Positives = 53/144 (36%), Gaps = 24/144 (16%)
Query: 142 SARDKNGHGSHTLSRAGGNFVAG--ASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYD 199
D N HG+H VAG A+ G A G +P R+ +A D G
Sbjct: 65 DPMDLNNHGTH---------VAGIAAAETNNATGIA-GMAPNTRILAVRAL-DRNGSGTL 113
Query: 200 CDIIAAFDMAIHDGVDMLSVSLVAIGSF--------HAVQHGIVVVCSDGNEGLVDVTLQ 251
DI A A G +++++SL +A G VVV + GN G
Sbjct: 114 SDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEP 173
Query: 252 NAAPRQIVVGASTMDRDL---SNY 272
+ I VGA L SNY
Sbjct: 174 ASYENVIAVGAVDQYDRLASFSNY 197
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 15/76 (19%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
+ +SGTSM+ P+++G+A L + + ++ AI TA T
Sbjct: 219 YAYMSGTSMASPHVAGLAAL--LASQGRNNIEIRQAIEQTADK-------------ISGT 263
Query: 477 PFSYGAGHVQPNLAMD 492
+ G + A+
Sbjct: 264 GTYFKYGRINSYNAVT 279
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 5e-11
Identities = 45/227 (19%), Positives = 72/227 (31%), Gaps = 61/227 (26%)
Query: 63 RIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCN 122
+I ++ + G ++ + +D+G+
Sbjct: 10 QIKAPALHSQGYTGSNVKVAVIDSGI---------------------------------- 35
Query: 123 RYFNQDYAVHKG--PLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSP 180
+ D V G + S +D N HG+H AG A G G +P
Sbjct: 36 DSSHPDLKVAGGASMVPSETNPFQDNNSHGTHV---AG---TVAAL--NNSIGVL-GVAP 86
Query: 181 KARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSLVAIGSF--------HAVQH 232
A + K G II + AI + +D++++SL AV
Sbjct: 87 SASLYAVKVL-GADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVDKAVAS 145
Query: 233 GIVVVCSDGNEGLVDVTLQN----AAPRQIVVGASTMDRDL---SNY 272
G+VVV + GNEG + P I VGA S+
Sbjct: 146 GVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSV 192
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
+ + +GTSM+ P+++G A L HP+W+ V+S++ T T
Sbjct: 214 YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL--------------GD 259
Query: 477 PFSYGAGHVQPNLAMD 492
F YG G + A
Sbjct: 260 SFYYGKGLINVQAAAQ 275
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 24/144 (16%)
Query: 142 SARDKNGHGSHTLSRAGGNFVAG--ASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYD 199
+ ++ NGHG+H AG A+V G A G +PKA + + D G
Sbjct: 64 TPQNGNGHGTH---------CAGIAAAVTNNSTGIA-GTAPKASILAVRVL-DNSGSGTW 112
Query: 200 CDIIAAFDMAIHDGVDMLSVSLVAIGSF--------HAVQHGIVVVCSDGNEGLVDVTLQ 251
+ A G ++S+SL +A G VVV + GN G
Sbjct: 113 TAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYP 172
Query: 252 NAAPRQIVVGASTMDRDL---SNY 272
I V ++ + + S Y
Sbjct: 173 AYYSNAIAVASTDQNDNKSSFSTY 196
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
+ S+SGTSM+ P+++G+AGL + S + +++AI TA T
Sbjct: 218 YASLSGTSMATPHVAGVAGL--LASQGRSASNIRAAIENTADK-------------ISGT 262
Query: 477 PFSYGAGHVQPNLAMD 492
+ G V A+
Sbjct: 263 GTYWAKGRVNAYKAVQ 278
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 29/148 (19%)
Query: 142 SARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCD 201
D NGHG+H AG A G G +P + K + G
Sbjct: 56 YNTDGNGHGTHV---AG---TVAAL--DNTTGVL-GVAPSVSLYAVKVL-NSSGSGSYSG 105
Query: 202 IIAAFDMAIHDGVDMLSVSL----------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQ 251
I++ + A +G+D++++SL A+ +A G+VVV + GN G T
Sbjct: 106 IVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD--NAYARGVVVVAAAGNSGNSGSTNT 163
Query: 252 N----AAPRQIVVGASTMDRDL---SNY 272
I VGA + + S+
Sbjct: 164 IGYPAKYDSVIAVGAVDSNSNRASFSSV 191
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 8e-09
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 14/74 (18%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
+ +++GTSM+ P+++G A L HP+ S + V++ + +TAT +
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL--------------GS 258
Query: 477 PFSYGAGHVQPNLA 490
F YG G + A
Sbjct: 259 SFYYGKGLINVEAA 272
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 35/230 (15%), Positives = 64/230 (27%), Gaps = 39/230 (16%)
Query: 70 WEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKW----KGICQNDKDARFHC---- 121
+ I I +D F + W + I D A
Sbjct: 42 HNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQG 101
Query: 122 NRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPK 181
+ ++ A+ ++ N H H V ++ G G +P
Sbjct: 102 LKGKEKEEALEAVIPDTK--DRIVLNDHACH---------VTS-TIVGQEHSPVFGIAPN 149
Query: 182 ARVAGYKACWDGMGGCYD----CDIIAAFDMAIHDGVDMLSVSLVAIGSF---------- 227
RV G D ++ A D+A+ G +++ +
Sbjct: 150 CRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQA 209
Query: 228 --HAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDL---SNY 272
+ +++V GN L P + VGA+ +D SN+
Sbjct: 210 IKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTPCHFSNW 259
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 9e-07
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 419 SISGTSMSGPYISGIAGLPKILH----PDWSPAAVQSAIMTTATTQDNKKQQILDASFTE 474
++GTSM+ P ++GI+ L L AV++A++ TA D +
Sbjct: 287 RLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE---------VV 337
Query: 475 ATPFSYGAGHVQPNLAMD 492
P G V AM
Sbjct: 338 EEPERCLRGFVNIPGAMK 355
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 59/267 (22%), Positives = 87/267 (32%), Gaps = 70/267 (26%)
Query: 30 MAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIPPNSIWEKARYGEDIIIGNLDTGVW 89
M K + + K L G+E + ++W + G IIG +DTG
Sbjct: 1 MRKFRLIPYKQVDKVSALSEV-PM---GVE---IVEAPAVWRASAKGAGQIIGVIDTGCQ 53
Query: 90 RESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGH 149
+ + R DY + + D NGH
Sbjct: 54 VDHPDLAE--------------------RIIGGVNLTTDYGGDET-------NFSDNNGH 86
Query: 150 GSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMA 209
G+H AG A+ G G G +PKA + KA G G I A A
Sbjct: 87 GTHV---AG---TVAAA--ETGSGVV-GVAPKADLFIIKAL-SGDGSGEMGWIAKAIRYA 136
Query: 210 I------HDGVDMLSVSL----------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQN- 252
+ + + ++++SL A+ AV + + VVC+ GNEG
Sbjct: 137 VDWRGPKGEQMRIITMSLGGPTDSEELHDAVKY--AVSNNVSVVCAAGNEGDGREDTNEF 194
Query: 253 ----AAPRQIVVGASTMDRDL---SNY 272
A I VGA D L +N
Sbjct: 195 AYPAAYNEVIAVGAVDFDLRLSDFTNT 221
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 417 FNSISGTSMSGPYISGIAGL-----PKILHPDWSPAAVQSAIMTTAT 458
+ +SGT+M+ P+++G L S + + ++ AT
Sbjct: 243 YAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRAT 289
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 7e-09
Identities = 41/323 (12%), Positives = 90/323 (27%), Gaps = 110/323 (34%)
Query: 15 INGFAAKLADAVAAEMAKHPKVVS-------VFLSKEKKLHTTHSWEFLGLE---QNGRI 64
++ K+ A +A + + ++ EK + T + +
Sbjct: 75 LHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITN 134
Query: 65 PPNSIWEKARYGEDIIIGNLDTGV-----------WRESKSFGDEGFGPIPSKWKGICQN 113
S ++ + I +DTGV +SK+ G
Sbjct: 135 NGAS-YDDLPKHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVP---------LNGFRGT 184
Query: 114 DKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAG--ASVFGFG 171
+ + + D+ GHG+ V+G ++
Sbjct: 185 EPEETGDVH-------------------DVNDRKGHGTM---------VSGQTSANGKL- 215
Query: 172 KGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSLVAIGSF---- 227
G +P + Y+ G + A A +DG ++++S+ +
Sbjct: 216 ----IGVAPNNKFTMYRVF--GSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKND 269
Query: 228 --------------------HAVQHGIVVVCSDGNEGLVDVTLQNAAPRQ---------- 257
+A + +VV + GN+G+ Q ++
Sbjct: 270 HQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKD 329
Query: 258 --------IVVGASTMDRDLSNY 272
+ VG++ +LS +
Sbjct: 330 VPASMDNVVTVGSTDQKSNLSEF 352
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 13/75 (17%)
Query: 419 SISGTSMSGPYISGIAGL-PKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATP 477
+GT+++ P +SG L H + P + T+++N
Sbjct: 402 YQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN------------KPF 449
Query: 478 FSYGAGHVQPNLAMD 492
YG G + A++
Sbjct: 450 SRYGHGELDVYKALN 464
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 8e-09
Identities = 38/229 (16%), Positives = 65/229 (28%), Gaps = 52/229 (22%)
Query: 67 NSIWEKARY-GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYF 125
+ G+ I+ DTG+ +
Sbjct: 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSM--------------HEAFRGKITALYAL 56
Query: 126 NQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVA 185
+ +A D NGHG+H GN G++ KG A P+A +
Sbjct: 57 GRTN------------NANDTNGHGTHVAGSVLGN---GST----NKGMA----PQANLV 93
Query: 186 GYKAC-WDGMGGCYDCDIIAAFDMAIHDGVDMLSVSLVAIGSF-----------HAVQHG 233
G G ++ F A G + + S A + + ++
Sbjct: 94 FQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKND 153
Query: 234 IVVVCSDGNEG--LVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKR 280
+ ++ + GNEG ++ A I VGA+ R N
Sbjct: 154 MTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHV 202
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 20/123 (16%)
Query: 383 PTTEFGAKP---APYMAALSSKGPIHITPEILKRRIPF-NSISGTSMSGPYISGIAGL-- 436
PT + KP AP LS++ + + GTSM+ P ++G
Sbjct: 210 PTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLR 269
Query: 437 ---PKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDP 493
K P+ +++A++ A + G G V + +++
Sbjct: 270 EHFVKNRGITPKPSLLKAALIAGAADIG-----------LGYPNGNQGWGRVTLDKSLNV 318
Query: 494 GLV 496
V
Sbjct: 319 AYV 321
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 39/150 (26%), Positives = 54/150 (36%), Gaps = 27/150 (18%)
Query: 142 SARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCD 201
S D+NGHG+H AG A A G G +P A + YK G Y D
Sbjct: 64 SCTDRNGHGTHV---AG---TALADGGSDQAGIY-GVAPDADLWAYKVL-LDSGSGYSDD 115
Query: 202 IIAAFDMAIHDGVDMLSVSLV---------------AIGSFHAVQHGIVVVCSDGNEGLV 246
I AA A + +++ A+ A G+++V + GN G
Sbjct: 116 IAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVNY--AYSKGVLIVAAAGNSGYS 173
Query: 247 DVTLQN--AAPRQIVVGASTMDRDLSNYVV 274
T+ A P I V A + Y V
Sbjct: 174 QGTIGYPGALPNAIAVAALENVQQNGTYRV 203
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 22/121 (18%)
Query: 384 TTEFGAKPAPYMAALSSKGPIHITPEILKRRIP------------------FNSISGTSM 425
+A SS+G I + + + +N+ISGTSM
Sbjct: 192 LENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGGYNTISGTSM 251
Query: 426 SGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHV 485
+ P++SG+A +P S ++S + A + D K ++ G G
Sbjct: 252 ATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY----GAAIGDDYASGFGFA 307
Query: 486 Q 486
+
Sbjct: 308 R 308
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 22/149 (14%)
Query: 137 NSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFG-KGTAKGGSPKARVAGYKACWDGMG 195
++Y + N HG+H AG A G G + A + K + G
Sbjct: 53 TGNWYQPGNNNAHGTHV---AG---TIAAIANNEGVVGVM--PNQNANIHIVKVF-NEAG 103
Query: 196 GCYDCDIIAAFDMAI-HDGVDMLSVSLVAIGSF--------HAVQHGIVVVCSDGNEGLV 246
Y ++AA D + G +++++SL GS +G++++ + GN G
Sbjct: 104 WGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHYNNGVLLIAAAGNAGDS 163
Query: 247 DVTLQNAAPRQIVVGASTMDRDL---SNY 272
+ + + V A + D S Y
Sbjct: 164 SYSYPASYDSVMSVAAVDSNLDHAAFSQY 192
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 416 PFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEA 475
+ +GTSM+ P++SG+A L HP+ S + V++A+ TA
Sbjct: 361 DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVA-----------G 409
Query: 476 TPFSYGAGHVQPNLAMD 492
G G + A
Sbjct: 410 RDNQTGYGMINAVAAKA 426
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 6e-08
Identities = 26/168 (15%), Positives = 50/168 (29%), Gaps = 27/168 (16%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
++ GTSM+ P+++G+ + P+ P ++ + TA +
Sbjct: 374 YDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GW 422
Query: 477 PFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNAIIL 536
G G V+ + A+ L V + + T+ + +
Sbjct: 423 DHDTGYGLVKLDAALQGPLPTQGGVEE--------------FQVVVTDAKGNFGVPTVFV 468
Query: 537 VNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAP 584
+G + R GTY V P +AP
Sbjct: 469 SMMRDNGSCYYAKTGPDGIARFPHI--DSGTYDIFVGGPDHWDRALAP 514
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 35/157 (22%), Positives = 50/157 (31%), Gaps = 31/157 (19%)
Query: 137 NSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKA-----RVAGYKACW 191
+ + G+H AG A GKG G +P A + A
Sbjct: 188 LPAGTDSSYGGSAGTHV---AG---TIAAK--KDGKGIV-GVAPGAKIMPIVIFDDPALV 238
Query: 192 DGMGGCYDCDIIAAFDMAIHDGVDMLSVSLVAIGSF--------HAVQHGIVVVCSDGNE 243
G G D + A A G +++ S G +A++HG+V+V S GN
Sbjct: 239 GGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVVMVVSAGNN 298
Query: 244 GLVDVTLQN--AAPRQIVVGASTMDRDL------SNY 272
D Q P I V A S+
Sbjct: 299 T-SDSHHQYPAGYPGVIQVAALDYYGGTFRVAGFSSR 334
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 37/162 (22%), Positives = 54/162 (33%), Gaps = 41/162 (25%)
Query: 142 SARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCD 201
D+NGHG+H G A G G +P ++ + D G D
Sbjct: 68 DCADQNGHGTHV---IG---TIAAL--NNDIGVV-GVAPGVQIYSVRVL-DARGSGSYSD 117
Query: 202 IIAAFDMAIHD--------------------GVDMLSVSLVAIGSF--------HAVQHG 233
I + AI +++S+SL A G
Sbjct: 118 IAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNAG 177
Query: 234 IVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDL---SNY 272
IV+V + GNEG + A P I VGA + ++ SN
Sbjct: 178 IVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR 219
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 24/89 (26%)
Query: 417 FNSISGTSMSGPYISGIAGL-------------PKILHPDWSPAAVQSAIMTTATTQDNK 463
+ ++ GT+M+ P++SG+ L P D S V+ + TA
Sbjct: 239 YETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA------ 292
Query: 464 KQQILDASFTEATPFSYGAGHVQPNLAMD 492
D YG G V+ LA+
Sbjct: 293 -----DDLGPTGWDADYGYGVVRAALAVQ 316
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 9e-07
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 419 SISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ SGTS + +SG+ +P + ++ ++ +A
Sbjct: 267 TGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESAD 306
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 29/129 (22%)
Query: 142 SARDKNGHGSHTLSRAGGNFVAG--ASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYD 199
+ HG+ +A AS +G G P A ++ + DG+ +
Sbjct: 82 KSEALYIHGTA---------MASLIASRYGI-----YGVYPHALISSRRVIPDGVQDSWI 127
Query: 200 CDI--IAAFDMAIHDGVDMLSVSLVAIGSFH-----------AVQHGIVVVCSDGNEGLV 246
I I + ++++S G + ++V + GN+G
Sbjct: 128 RAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGAD 187
Query: 247 DVTLQNAAP 255
L
Sbjct: 188 IRKLSAQQR 196
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
F S SGTS + +++GIA + P+ + A ++ ++ +
Sbjct: 227 FVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAK 269
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 30/174 (17%), Positives = 47/174 (27%), Gaps = 41/174 (23%)
Query: 125 FNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARV 184
V + A + HG+H AG V G AK A +
Sbjct: 50 VTDFENVPEEDGTRFHRQASKCDSHGTHL---AG---VVSGRDA----GVAK----GASM 95
Query: 185 AGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSLVA---IGSFH----------AVQ 231
+ + G + + + LV + + +
Sbjct: 96 RSLRVL-NCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQRLAR 154
Query: 232 HGIVVVCSDGNEGLVDVTLQNA-------APRQIVVGASTMDRDLSNYVVLGNN 278
G+V+V + GN +A AP I VGA+ LG N
Sbjct: 155 AGVVLVTAAGNFR------DDACLYSPASAPEVITVGATNAQDQPVTLGTLGTN 202
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 418 NSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
N+ISGTSM+ P+++G+A L +P+ SPA V + + T AT
Sbjct: 218 NTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATA 259
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 40/151 (26%), Positives = 56/151 (37%), Gaps = 40/151 (26%)
Query: 141 YSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDC 200
Y A D NGHG+H AG G S + G AK V G + + G +
Sbjct: 64 YDATDCNGHGTHV---AG---TIGGSTY----GVAK----NVNVVGVRVL-NCSGSGSNS 108
Query: 201 DIIAAFDMAIHDGVDM--LSVSLVAIGSF-------HAVQHGIVVVCSDGNEGLVDVTLQ 251
+IA + ++ ++SL S AV GI V + GN+
Sbjct: 109 GVIAGINWVKNNASGPAVANMSLGGGASQATDDAVNAAVAAGITFVVAAGNDN------S 162
Query: 252 NA-------APRQIVVGASTMDRDL---SNY 272
NA A I VG++T + SNY
Sbjct: 163 NACNYSPARAADAITVGSTTSNDSRSSFSNY 193
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 418 NSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+++GTSM+ P+++G+A L +P +PA+V SAI+ ATT
Sbjct: 216 QTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATT 257
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 33/150 (22%), Positives = 51/150 (34%), Gaps = 40/150 (26%)
Query: 142 SARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCD 201
+ +D NGHG+H AG G + G AK + + D G
Sbjct: 63 NGQDCNGHGTHV---AG---TIGGVTY----GVAK----AVNLYAVRVL-DCNGSGSTSG 107
Query: 202 IIAAFDMAIHDGVDM--LSVSLVAIGSF-------HAVQHGIVVVCSDGNEGLVDVTLQN 252
+IA D + ++SL S +++ G+V + GN+ N
Sbjct: 108 VIAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVKNSIAAGVVYAVAAGNDN------AN 161
Query: 253 A-------APRQIVVGASTMDRDL---SNY 272
A + VGA+T SNY
Sbjct: 162 ACNYSPARVAEALTVGATTSSDARASFSNY 191
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 418 NSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+ISGTSM+ P+++G+A L + +P + + + A+
Sbjct: 214 KTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASE 255
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 40/151 (26%)
Query: 141 YSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDC 200
+ D NGHG+H AG G S + G AK + G + G
Sbjct: 62 ADSSDCNGHGTHV---AG---TIGGSQY----GVAK----NVNIVGVRVL-SCSGSGTTS 106
Query: 201 DIIAAFDMAIHDGVDM--LSVSLVAIGSF-------HAVQHGIVVVCSDGNEGLVDVTLQ 251
+I+ D + ++SL S A+Q G+ + + GN
Sbjct: 107 GVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQGAIQSGVSFMLAAGNSN------A 160
Query: 252 NA-------APRQIVVGASTMDRDL---SNY 272
+A P + VG++T SN+
Sbjct: 161 DACNTSPARVPSGVTVGSTTSSDSRSSFSNW 191
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 39/155 (25%), Positives = 54/155 (34%), Gaps = 45/155 (29%)
Query: 142 SARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCD 201
+ARD +GHG+H AG G+ + G AK K + G K D G +
Sbjct: 63 TARDGHGHGTHC---AG---TIGSKTW----GVAK----KVSIFGVKVL-DDSGSGSLSN 107
Query: 202 IIAAFDMAIHDGVDM-------LSVSLVAIGSF-------HAVQHGIVVVCSDGNEGLVD 247
IIA D D S+SL S G+ V + GN+
Sbjct: 108 IIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAARLQSSGVFVAVAAGNDN--- 164
Query: 248 VTLQNA-------APRQIVVGASTMDRDL---SNY 272
++A P VGA+ + SNY
Sbjct: 165 ---RDAANTSPASEPTVCTVGATDSNDVRSTFSNY 196
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 418 NSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
N+ISGTSM+ P+I+G+A L S A+ I T +T
Sbjct: 219 NTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTK 259
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 41/155 (26%), Positives = 53/155 (34%), Gaps = 45/155 (29%)
Query: 142 SARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCD 201
S+RD NGHG+H AG G+ + G AK K ++ G K D G
Sbjct: 62 SSRDGNGHGTHC---AG---TVGSRTY----GVAK----KTQLFGVKVL-DDNGSGQYST 106
Query: 202 IIAAFDMAIHDGVDM-------LSVSLVAIGSF-------HAVQHGIVVVCSDGNEGLVD 247
IIA D D + S+SL S G++V + GN
Sbjct: 107 IIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVAAGNNN--- 163
Query: 248 VTLQNA-------APRQIVVGASTMDRDL---SNY 272
+A P VGAS SNY
Sbjct: 164 ---ADARNYSPASEPSVCTVGASDRYDRRSSFSNY 195
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 9e-04
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 418 NSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
SISGTSM+ P+++G+A L + A+ I TA
Sbjct: 218 RSISGTSMATPHVAGLAAYLMTLGKT-TAASACRYIADTANK 258
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 9e-05
Identities = 87/626 (13%), Positives = 165/626 (26%), Gaps = 233/626 (37%)
Query: 30 MAKHPKVVSVFLSKEKKLHTTHSW--EFLGLEQNGRIPPNSIWEKAR---YGEDIIIGNL 84
++K ++V F+ E+ L + + + EQ ++ + R Y ++ +
Sbjct: 72 LSKQEEMVQKFV--EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 85 DTGVWRESKS------------------FGDEGFGPIPSKW---KGICQNDKDARFHCNR 123
+ V R G G G K +C + C
Sbjct: 130 N--VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG----KTWVALDVCL---SYKVQCKM 180
Query: 124 YFNQDYAVHKGPLNS---------SFYSARDKNGH-GSHTLSRAGGNFVAGASVFGFGKG 173
F + ++ NS D N S S
Sbjct: 181 DFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI------------ 227
Query: 174 TAKGGSPKARV------AGYKAC-------WDGMGGCYDCDIIAAFDMAIHDGVDML--- 217
S +A + Y+ C + AF++ +L
Sbjct: 228 ----HSIQAELRRLLKSKPYENCLLVLLNVQNA-------KAWNAFNL----SCKILLTT 272
Query: 218 -SVSLVAIGSFHAVQHGIVVVCSDG---NEGL------VDVTLQNAAPRQI--------- 258
+ S H + S +E +D Q+ PR++
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLS 331
Query: 259 VVGASTMDRD----LSNYVVLGNNKRFKLISERAKGL-PSD------KLFTFIRTLDPKK 307
++ RD N+ + +K +I L P++ +L F P
Sbjct: 332 IIAE--SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-----PPS 384
Query: 308 VK--GKILVCL-------NVRSVDEGL-QAALA---------GAADIVLVNLPEFGND-- 346
+L + +V V L + +L I L + N+
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 347 -HTT--DRHVLPAS------VITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAA 397
H + D + +P + + + D Y F++ +G+ ++
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQY---FYSH----IGH--------------HLKN 483
Query: 398 LSSKGPIHITPEILKRRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTA 457
+ + + + + F + KI H + A S
Sbjct: 484 IEHPERMTLFRMVF---LDFRFLEQ---------------KIRHDSTAWNASGS---ILN 522
Query: 458 TTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNV 517
T Q K Y ++ N DP Y VN L+FL +N+
Sbjct: 523 TLQQLKF---------------YK-PYICDN---DP--KYERLVNAILDFL--PKIEENL 559
Query: 518 ISLFSTNCTYTCPKNAIILVNFNYPS 543
I YT ++ +
Sbjct: 560 I-----CSKYTD----LLRIALMAED 576
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-04
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 3/125 (2%)
Query: 363 DGYYNLFFTFTRHPVGYIKR--PTTEFGAKPAPYMAALSSKGPIHITPEILKRRIPFNSI 420
DGY N +T + +E + + ++ I L+++ S
Sbjct: 199 DGYTNSIYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNEKQIVTTDLRQKC-TESH 257
Query: 421 SGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSY 480
+GTS S P +GI L + + + +Q ++ T+ SY
Sbjct: 258 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY 317
Query: 481 GAGHV 485
G G +
Sbjct: 318 GYGLL 322
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 7e-04
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 11/169 (6%)
Query: 418 NSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATP 477
NS GTS + P +G+ L +P+ + VQ + +A + S
Sbjct: 266 NSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKY 325
Query: 478 -FSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTN-CTYTCPKNAII 535
YG G + + ++ + +L L +++ S T T + ++
Sbjct: 326 SHRYGFGKIDAHKLIEMSKTWENVNAQTWFYLPTLYVSQSTNSTEETLESVITISEKSLQ 385
Query: 536 LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAP 584
NF + I R GT + +P G+ +
Sbjct: 386 DANFKRIEHVTVTV--DIDTEIR-------GTTTVDLISPAGIISNLGV 425
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 620 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.85 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.75 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.5 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.23 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.05 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 97.74 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 97.62 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 97.4 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 96.3 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 95.62 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 91.9 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 91.88 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 91.01 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 90.86 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 90.81 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 87.65 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 87.57 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 84.31 | |
| 3qis_A | 366 | Inositol polyphosphate 5-phosphatase OCRL-1; DENT | 83.01 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-111 Score=953.80 Aligned_cols=555 Identities=35% Similarity=0.605 Sum_probs=500.6
Q ss_pred cCCCccccCcccCCCCCCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCC-CCcccCc----
Q 042484 49 TTHSWEFLGLEQNGRIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKD-ARFHCNR---- 123 (620)
Q Consensus 49 ~~~s~~~~g~~~~~~~~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~-~~~~~n~---- 123 (620)
++++|+|+|+++. ..+|+.+.+|+||+|||||||||++||+|.+.|++|+|.+|+|.|+.+.+ +...||+
T Consensus 1 Tt~s~~flgl~~~-----~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig 75 (649)
T 3i6s_A 1 TTHTSDFLKLNPS-----SGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIG 75 (649)
T ss_dssp CCSHHHHTTCCSS-----SSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEE
T ss_pred CCCChHHcCCCCc-----hhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceee
Confidence 5789999999853 58999999999999999999999999999999999999999999999888 7788999
Q ss_pred --cccccc-cccCCCCCCCCCCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHH
Q 042484 124 --YFNQDY-AVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDC 200 (620)
Q Consensus 124 --~~~~~~-~~~~~~~~~~~~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~ 200 (620)
+|.+++ .. ......+..+++|..||||||||||||+.+++.+++|++.+.+.||||+|+|++||+|+.. | |..+
T Consensus 76 ~~~f~~~~~~~-~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~ 152 (649)
T 3i6s_A 76 ANYFNKGILAN-DPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-G-TFTS 152 (649)
T ss_dssp EEECCHHHHHH-CTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETT-E-ECHH
T ss_pred eEeccCccccc-ccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCC-C-CCHH
Confidence 444444 22 1122345667899999999999999999988888889888899999999999999999987 5 9999
Q ss_pred HHHHHHHHHHhCCCcEEeecH-----------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcc
Q 042484 201 DIIAAFDMAIHDGVDMLSVSL-----------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDL 269 (620)
Q Consensus 201 ~i~~ai~~a~~~gvdVIn~Sl-----------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~ 269 (620)
++++||++|+++|+||||||| +.+++++|+++|++||+||||+|+...++.+.+||+|+|||++.||.|
T Consensus 153 ~i~~Ai~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f 232 (649)
T 3i6s_A 153 DLIAAMDQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTF 232 (649)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEE
T ss_pred HHHHHHHHHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccce
Confidence 999999999999999999999 677888999999999999999999999999999999999999999999
Q ss_pred cceEEeCCCeEEEEeeccCCCCCCCceeeEE----------EccCCCcc--cccEEEEEe--ccchhHHHHHHHcCCcEE
Q 042484 270 SNYVVLGNNKRFKLISERAKGLPSDKLFTFI----------RTLDPKKV--KGKILVCLN--VRSVDEGLQAALAGAADI 335 (620)
Q Consensus 270 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~--~gkivl~~~--~~~~~~~~~~~~~ga~gv 335 (620)
...+.+++++++.|.+++..... ...+|++ +.+++..+ +||||+|.| +.+.+|..+++++|+.|+
T Consensus 233 ~~~~~lgng~~~~g~sl~~~~~~-~~~~plv~~~~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~ 311 (649)
T 3i6s_A 233 AGTLTLGNGLKIRGWSLFPARAF-VRDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAI 311 (649)
T ss_dssp EEEEEETTSCEEEEECCCSSCBC-EEEEEEECCTTTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEE
T ss_pred eeEEEeCCCcEEeeeecccCccc-CcceeeEecccccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEE
Confidence 99999999999999999876643 5668887 23556666 999999999 889999999999999999
Q ss_pred EEecCCCCCCcccCCCccccEEEeecCCccee-eecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC-----CCCCc
Q 042484 336 VLVNLPEFGNDHTTDRHVLPASVITFNDGYYN-LFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI-----HITPE 409 (620)
Q Consensus 336 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~-----~~kPd 409 (620)
|++|+. .......+.+|+++|+..+|+.| .|+++.++++++|.+..+..+..+.+.++.||||||+ ++|||
T Consensus 312 i~~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPD 388 (649)
T 3i6s_A 312 FISEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPD 388 (649)
T ss_dssp EECCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCC
T ss_pred EEecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCe
Confidence 999986 35566778999999999999999 9999999999999999998888889999999999997 58999
Q ss_pred eee---------cC--------------CCcEEeccccchhhhhhhhhhhhcccCCCCCHHHHHHHHHcccccCCCCcce
Q 042484 410 ILK---------RR--------------IPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQ 466 (620)
Q Consensus 410 i~a---------~~--------------~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~ 466 (620)
|+| +. ..|..|||||||||||||++|||||+||+|||++||++||+||+++++.+.|
T Consensus 389 I~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~ 468 (649)
T 3i6s_A 389 ILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKP 468 (649)
T ss_dssp EEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSB
T ss_pred EEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCc
Confidence 999 11 6899999999999999999999999999999999999999999999999999
Q ss_pred eccC-CCCCCCCceecccccCccccCCCceeeecCchhhHHhhhhcCCCcceeeeccCCcccc--CCCCCccccccCCCe
Q 042484 467 ILDA-SFTEATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYT--CPKNAIILVNFNYPS 543 (620)
Q Consensus 467 ~~~~-~~~~~~~~~~GaG~vn~~~A~~~~lv~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ln~ps 543 (620)
+.+. .+.++++++||+|+|||.+|++||||||.+.+||++|||++||+..+|++|++. +.+ |++ ...+|||||
T Consensus 469 i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~-~~~~~C~~---~~~~lNyPs 544 (649)
T 3i6s_A 469 IKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARS-SASHNCSN---PSADLNYPS 544 (649)
T ss_dssp CEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTT-TSCC-CCC---CCCCCCCSS
T ss_pred ccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecC-CCcCCCCC---chhhcCCCc
Confidence 9875 567889999999999999999999999999999999999999999999999987 677 986 467999999
Q ss_pred EEeec-cCce-----EEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEccccCCCCeEEE
Q 042484 544 ITVPK-LSGS-----ITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKNASVTKDYVFG 616 (620)
Q Consensus 544 i~~~~-~~~~-----~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~g 616 (620)
|++.. +... ++|+|||||||. ..+|++++++|.|++|+|+|++|+|++.+|+++|+|+|+... ...+.|+||
T Consensus 545 ~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~-~~~~~~~fg 623 (649)
T 3i6s_A 545 FIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIG-DEGQSRNVG 623 (649)
T ss_dssp EEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECC-C---CCCEE
T ss_pred EEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecc-cCCCceEEE
Confidence 99987 5665 899999999999 999999999999999999999999988999999999999875 456789999
Q ss_pred EEEC
Q 042484 617 ELIW 620 (620)
Q Consensus 617 ~~~w 620 (620)
+|+|
T Consensus 624 ~l~w 627 (649)
T 3i6s_A 624 SITW 627 (649)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-102 Score=882.33 Aligned_cols=540 Identities=39% Similarity=0.696 Sum_probs=447.1
Q ss_pred cCCCccccCcccCCCCCCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCcccc--
Q 042484 49 TTHSWEFLGLEQNGRIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFN-- 126 (620)
Q Consensus 49 ~~~s~~~~g~~~~~~~~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~-- 126 (620)
++++|+|+|++ ..+|.+..+|+||+|||||||||++||+|.++++++++.+|+|.|+.+.+ +.||+...
T Consensus 1 tt~s~~flGl~-------~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~--~~~n~k~ig~ 71 (621)
T 3vta_A 1 TTRSWDFLGFP-------LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNN--FRCNRKIIGA 71 (621)
T ss_dssp CCSHHHHTTCC-------TTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSS--CCCCSSEEEE
T ss_pred CCCChhHcCCC-------ccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCC--cccCcceeee
Confidence 57999999998 46888999999999999999999999999999999999999999998775 77988222
Q ss_pred ccccccCCCCCCCCCCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHH
Q 042484 127 QDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAF 206 (620)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai 206 (620)
..|.........+..+|+|++||||||||||||+.+.+.++.|++.+.++||||+|+|++||+|++. | |..+++++||
T Consensus 72 ~~~~~~~~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~di~~a~ 149 (621)
T 3vta_A 72 RSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWND-G-CSDTDILAAY 149 (621)
T ss_dssp EECCCSSSCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETT-E-ECHHHHHHHH
T ss_pred eecccCCccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCC-C-CCHHHHHHHH
Confidence 1221111223345677899999999999999999988888888888889999999999999999987 4 8999999999
Q ss_pred HHHHhCCCcEEeecH------------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEE
Q 042484 207 DMAIHDGVDMLSVSL------------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVV 274 (620)
Q Consensus 207 ~~a~~~gvdVIn~Sl------------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~ 274 (620)
++|+++|+||||||| ++++.++|+++||++|+||||+|+...++.+++||+++|++++.++.+...+.
T Consensus 150 ~~a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~ 229 (621)
T 3vta_A 150 DDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQ 229 (621)
T ss_dssp HHHHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEE
T ss_pred HHHHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEE
Confidence 999999999999999 67888999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeeccCCCCCCCceeeEE--------------------EccCCCcccccEEEEEeccchhHHHHHHHcCCcE
Q 042484 275 LGNNKRFKLISERAKGLPSDKLFTFI--------------------RTLDPKKVKGKILVCLNVRSVDEGLQAALAGAAD 334 (620)
Q Consensus 275 ~g~~~~~~g~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~g 334 (620)
++++..+.+.++.... ...++++ ..+++..++|||++|.+ .+..+.......|+.+
T Consensus 230 ~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~-~~~~~~~~~~~~Ga~g 305 (621)
T 3vta_A 230 IGNGQSFQGVSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEA-SFGPHEFFKSLDGAAG 305 (621)
T ss_dssp ETTSCEEEEBCCCCSC---CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSS-CCCHHHHHHHHTTCSE
T ss_pred eccCceeeeeecccCC---CcccccccccccccccccccccccccccccccccccceEEEEec-CCChhHHhhhhcceeE
Confidence 9999999888776433 2344444 34567789999999986 3445667788899999
Q ss_pred EEEecCCCCCCcccCCCccccEEEeecCCccee-eecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC-----CCCC
Q 042484 335 IVLVNLPEFGNDHTTDRHVLPASVITFNDGYYN-LFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI-----HITP 408 (620)
Q Consensus 335 vi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~-----~~kP 408 (620)
++++++.. ...+.+.+|...++..++..+ .|+.....+.+.+..... ......+.++.||||||+ ++||
T Consensus 306 vi~~~~~~----~~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~-~~~~~~~~va~FSSrGP~~~~~~ilKP 380 (621)
T 3vta_A 306 VLMTSNTR----DYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTT-ILNASAPVVVSFSSRGPNRATKDVIKP 380 (621)
T ss_dssp EEEECSCC----SSCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEE-EECTTCCCBCTTSCCCSCTTCTTSCSC
T ss_pred EEEEecCC----CcccccccceEEECHHHHHHHHHHHhccCCcceEEecceE-eccCCCCceeeecCCCCCCCCCCeecc
Confidence 99998754 234567899999999999999 999988888888755443 445678999999999997 4899
Q ss_pred ceee-------------------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHHHHHHHHcccccCCCCcceecc
Q 042484 409 EILK-------------------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILD 469 (620)
Q Consensus 409 di~a-------------------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~ 469 (620)
||+| ....|..|||||||||||||++|||||+||+|||++||++||+||++++..+
T Consensus 381 DI~APG~~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~----- 455 (621)
T 3vta_A 381 DISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARF----- 455 (621)
T ss_dssp CEEEECSSEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTT-----
T ss_pred ccccCCcceEeecCccccccCcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccC-----
Confidence 9999 1456999999999999999999999999999999999999999999887543
Q ss_pred CCCCCCCCceecccccCccccCCCceeeecCchhhHHhhhhcCCCcceeeeccCCccccCCCCC-ccccccCCCeEEee-
Q 042484 470 ASFTEATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNA-IILVNFNYPSITVP- 547 (620)
Q Consensus 470 ~~~~~~~~~~~GaG~vn~~~A~~~~lv~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ln~psi~~~- 547 (620)
.++.+++||+|+|||.+|++||||||++.+||+.|+|+++|+..+++++++. ...|+... ....+||||||++.
T Consensus 456 ---~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lN~pS~~v~~ 531 (621)
T 3vta_A 456 ---NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGD-YSACTSGNTGRVWDLNYPSFGLSV 531 (621)
T ss_dssp ---CTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC------------------------------CGGGSCCSSEEEEC
T ss_pred ---CCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeecc-ccccCCCCcCcccccccccEEEEc
Confidence 3678899999999999999999999999999999999999999999999987 77887643 35789999999985
Q ss_pred --ccCceEEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEccccCCCCeEEEEEEC
Q 042484 548 --KLSGSITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKNASVTKDYVFGELIW 620 (620)
Q Consensus 548 --~~~~~~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~g~~~w 620 (620)
++..+++|+|||||+|. ..+|++++++|.|++|+|+|++|+|++.||+++|+|+|+. ...+.|+||+|+|
T Consensus 532 ~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~---~~~~~~~~g~l~w 604 (621)
T 3vta_A 532 SPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG---SIKGFVVSASLVW 604 (621)
T ss_dssp CSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE---CCCSSEEEEEEEE
T ss_pred cCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe---cCCCceEEEEEEE
Confidence 45578999999999999 9999999999999999999999999888999999999986 3568899999999
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-73 Score=669.26 Aligned_cols=490 Identities=22% Similarity=0.259 Sum_probs=372.8
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCC-----------CCCcccCccccccc-cccC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDK-----------DARFHCNRYFNQDY-AVHK 133 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~-----------~~~~~~n~~~~~~~-~~~~ 133 (620)
+..+|+++++|+||+|||||||||++||+|.+ +..|++.|.... .....||+-...++ ..
T Consensus 6 ~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~-- 77 (926)
T 1xf1_A 6 VKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRL------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYS-- 77 (926)
T ss_dssp CHHHHHHHCSCTTCEEEEEESCCTTCCCCCSC------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESC--
T ss_pred cHHHHhccCCCCCcEEEEEecCCCCCCHhHcC------CCCCcccccchhhhcccccccCcccccccCcccceeeccc--
Confidence 45899999999999999999999999999984 245666664221 12346776222222 11
Q ss_pred CCCCCCCCCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCC-CCHHHHHHHHHHHHhC
Q 042484 134 GPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGG-CYDCDIIAAFDMAIHD 212 (620)
Q Consensus 134 ~~~~~~~~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~-~~~~~i~~ai~~a~~~ 212 (620)
....+ .|+.||||||||||||+...+.+ ..+.+.||||+|+|++||+|++. |. +..+++++||++|+++
T Consensus 78 ----~~~~~-~D~~gHGThVAgiiAg~~~~~~~----~~~~~~GvAP~A~l~~~kv~~~~-g~~~~~~~i~~Ai~~Ai~~ 147 (926)
T 1xf1_A 78 ----KDGKT-AVDQEHGTHVSGILSGNAPSETK----EPYRLEGAMPEAQLLLMRVEIVN-GLADYARNYAQAIRDAINL 147 (926)
T ss_dssp ----CCSCC-CCSSTTTTHHHHSSCCCCCCCCS----CSCCTTTTCTTSEEEEEECCCCS-CHHHHHHHHHHHHHHHHHT
T ss_pred ----cCCCC-CCCCCcHHHHHHHHhCCCccCcc----cCCceEEECCCCEEEEEEeecCC-CCCCcHHHHHHHHHHHHHh
Confidence 01122 28899999999999998755432 13568999999999999999876 42 5668999999999999
Q ss_pred CCcEEeecH-------------HHHHHHHHHhcCcEEEEecCCCCC-------------CCCccCCC--CCceEEecccc
Q 042484 213 GVDMLSVSL-------------VAIGSFHAVQHGIVVVCSDGNEGL-------------VDVTLQNA--APRQIVVGAST 264 (620)
Q Consensus 213 gvdVIn~Sl-------------~~~~~~~a~~~Gv~vV~AAGN~G~-------------~~~t~~~~--ap~vitVga~~ 264 (620)
|+||||||| +..++.+|+++|++||+||||+|+ ...++.+| +||+|+|||++
T Consensus 148 gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~ 227 (926)
T 1xf1_A 148 GAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYS 227 (926)
T ss_dssp TCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEB
T ss_pred CCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEeccc
Confidence 999999999 466778899999999999999995 33456666 79999999999
Q ss_pred cCCcccceEEe-CCCeEEEEeeccC-CCCCCCceeeEE----Ecc--CCCcccccEEEEEe--ccchhHHHHHHHcCCcE
Q 042484 265 MDRDLSNYVVL-GNNKRFKLISERA-KGLPSDKLFTFI----RTL--DPKKVKGKILVCLN--VRSVDEGLQAALAGAAD 334 (620)
Q Consensus 265 ~~~~~~~~~~~-g~~~~~~g~~~~~-~~~~~~~~~~~~----~~~--~~~~~~gkivl~~~--~~~~~~~~~~~~~ga~g 334 (620)
.++.+...+.+ +++....+.++.. ..+.....++++ +|. +..+++||||+|.| |.+..|..+++++|+.|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~g~~~~~~~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~g 307 (926)
T 1xf1_A 228 PDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVG 307 (926)
T ss_dssp CSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTTSCSTTTTTTCTTSEEEEECCSSCHHHHHHHHHHTTCSE
T ss_pred cccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCCCCCccchhhcCCeEEEEECCCCCHHHHHHHHHhCCCcE
Confidence 99988888887 5554444444332 222235668887 211 11579999999999 89999999999999999
Q ss_pred EEEecCCCCCCcc-cCCCccccEEEeecCCccee-eecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCc
Q 042484 335 IVLVNLPEFGNDH-TTDRHVLPASVITFNDGYYN-LFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPE 409 (620)
Q Consensus 335 vi~~~~~~~~~~~-~~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPd 409 (620)
+|++++......+ ......+|...|+..++..| . ....++++......+.....+.++.||||||+ ++|||
T Consensus 308 vi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~~~~~~~~~a~FSSrGp~~~~~lKPD 383 (926)
T 1xf1_A 308 VLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVLPTASGTKLSRFSSWGLTADGNIKPD 383 (926)
T ss_dssp EEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEEECSSCSBCCTTSCCCBCTTSCBSCC
T ss_pred EEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecccceecccCCcceeccccCCCCCCCCccCce
Confidence 9999987533222 23457899999999988877 4 33344555444434555668899999999997 68999
Q ss_pred eee---------cCCCcEEeccccchhhhhhhhhhhhc----ccCCCCCHHH----HHHHHHcccccCCCCcceeccCCC
Q 042484 410 ILK---------RRIPFNSISGTSMSGPYISGIAGLPK----ILHPDWSPAA----VQSAIMTTATTQDNKKQQILDASF 472 (620)
Q Consensus 410 i~a---------~~~~y~~~sGTSMAaP~VAG~aALl~----~~~P~~sp~~----ik~~L~~TA~~~~~~~~~~~~~~~ 472 (620)
|+| +++.|..|||||||||||||++|||+ +.||+|+|+| ||++||+||++++..+. .
T Consensus 384 I~APG~~I~sa~~~~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~~------~ 457 (926)
T 1xf1_A 384 IAAPGQDILSSVANNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDE------K 457 (926)
T ss_dssp EEEECCCEEESSSCSSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGGG------T
T ss_pred EECCCCCEEeeccCCcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCCCcccCCC------C
Confidence 999 56789999999999999999999995 5699999997 99999999998754321 2
Q ss_pred CCCCCceecccccCccccCCCceeeecCchhhHHhhhhcCCCcceeeeccCCccccCCCCCccccccCCCeEEeeccCce
Q 042484 473 TEATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNAIILVNFNYPSITVPKLSGS 552 (620)
Q Consensus 473 ~~~~~~~~GaG~vn~~~A~~~~lv~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~psi~~~~~~~~ 552 (620)
..+++++||+|+||+.+|++|.+ |+|..+|+.. +|.+.++...
T Consensus 458 ~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~--------------------------~i~l~~~~~~ 500 (926)
T 1xf1_A 458 AYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS--------------------------KVHLNNVSDK 500 (926)
T ss_dssp EECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS--------------------------CEEEEEECSE
T ss_pred ccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc--------------------------eeeccccCcc
Confidence 35678999999999999999854 4676554332 3344444567
Q ss_pred EEEEEEEEEcCC-C--ceEEEEEeC--CCCeEEEEecceEEEe-------eCCeEEEEEEEEEEccc-------cCCCCe
Q 042484 553 ITVTRRVKNVGS-P--GTYQARVKT--PQGVSVTMAPKSLKFI-------NVGEEKSFKVNIKAKNA-------SVTKDY 613 (620)
Q Consensus 553 ~~~~rtv~n~~~-~--~ty~~~~~~--~~g~~v~v~p~~l~~~-------~~g~~~~~~v~~~~~~~-------~~~~~~ 613 (620)
.+++|||||+|+ + .+|++.+.. |.++.++|+|..|.+. ++||+++|+|+|+.... ...+.|
T Consensus 501 ~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~ 580 (926)
T 1xf1_A 501 FEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYF 580 (926)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEE
T ss_pred EEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcE
Confidence 889999999997 4 567777765 6688888888765443 55999999999998520 134568
Q ss_pred EEEEEEC
Q 042484 614 VFGELIW 620 (620)
Q Consensus 614 ~~g~~~w 620 (620)
.||.|+|
T Consensus 581 ~~G~i~~ 587 (926)
T 1xf1_A 581 LEGFVRF 587 (926)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999998
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-56 Score=490.61 Aligned_cols=310 Identities=29% Similarity=0.433 Sum_probs=248.3
Q ss_pred cceeEEecceeeeEEEEcCHHHHHHH-----------hcCCCeEEEEeceeeeeccCCCccccCccc-CCCCCCcccccc
Q 042484 5 HAIFYSYTRHINGFAAKLADAVAAEM-----------AKHPKVVSVFLSKEKKLHTTHSWEFLGLEQ-NGRIPPNSIWEK 72 (620)
Q Consensus 5 ~~~~~~y~~~~~G~s~~~~~~~~~~L-----------~~~~~V~~v~~~~~~~~~~~~s~~~~g~~~-~~~~~~~~~~~~ 72 (620)
.++++.|+ .|+||+++++.+++++| +++|+|++|++++.+++.... .+++. ..++.+..+|+.
T Consensus 60 ~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 134 (539)
T 3afg_A 60 AKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVET----EGLDESAAQVMATNMWNL 134 (539)
T ss_dssp CEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC---------------CCBCSCCBCC
T ss_pred CeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCcc----ccCCccccccCcHhHHhc
Confidence 47889996 69999999999999999 889999999999998775421 11111 112234689999
Q ss_pred CCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhh
Q 042484 73 ARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSH 152 (620)
Q Consensus 73 ~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTH 152 (620)
+++|+||+|||||||||++||+|.+. .... .++ . .....+.|+.|||||
T Consensus 135 g~~G~gv~VaViDtGid~~Hpdl~~~------------i~~~------------~d~-~------~~~~~~~D~~gHGTh 183 (539)
T 3afg_A 135 GYDGSGITIGIIDTGIDASHPDLQGK------------VIGW------------VDF-V------NGKTTPYDDNGHGTH 183 (539)
T ss_dssp SCCCTTCEEEEEESBCCTTSGGGTTT------------EEEE------------EET-T------TCCSSCCBSSSHHHH
T ss_pred CCCCCCcEEEEEecCCCCCChHHhCC------------Eeee------------EEC-C------CCCCCCCCCCCCHHH
Confidence 99999999999999999999999753 0000 011 0 012346789999999
Q ss_pred hhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC----CCcEEeecH-------
Q 042484 153 TLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD----GVDMLSVSL------- 221 (620)
Q Consensus 153 VAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~----gvdVIn~Sl------- 221 (620)
|||||||+... ..+.+.||||+|+|+++|++++. |.+..+++++||+||+++ |++||||||
T Consensus 184 VAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~-g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~ 255 (539)
T 3afg_A 184 VASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQ-GSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSD 255 (539)
T ss_dssp HHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCTT-SEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCC
T ss_pred HHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecCC-CCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCc
Confidence 99999988532 13457899999999999999987 678899999999999986 999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCCCccCCC--CCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCc
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNA--APRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDK 295 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~--ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 295 (620)
+..++.++.++|+++|+||||+|+...++..| .+++|+|||++.+
T Consensus 256 ~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~----------------------------- 306 (539)
T 3afg_A 256 GTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY----------------------------- 306 (539)
T ss_dssp SCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT-----------------------------
T ss_pred cchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecCC-----------------------------
Confidence 57778888999999999999999866655544 5899999984311
Q ss_pred eeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCC
Q 042484 296 LFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRH 375 (620)
Q Consensus 296 ~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 375 (620)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceeec--------------CC----CcEEeccccchhhhhhhhh
Q 042484 376 PVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKR--------------RI----PFNSISGTSMSGPYISGIA 434 (620)
Q Consensus 376 ~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~--------------~~----~y~~~sGTSMAaP~VAG~a 434 (620)
+.++.||+|||+ ++||||+|+ .. .|..++|||||||||||++
T Consensus 307 -----------------~~~a~fSs~Gp~~~~~~kpdi~APG~~I~s~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 369 (539)
T 3afg_A 307 -----------------DVITDFSSRGPTADNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVAGIA 369 (539)
T ss_dssp -----------------SCBCSSSCCCCCTTCBCCCSEEEECSSEEEECCTTCCCSEECSSSEEEECSHHHHHHHHHHHH
T ss_pred -----------------cccccccCCCCCCCCCCcccEecCcCCEEeeccCCCCCCCCCcccccccCchHHHHHHHHHHH
Confidence 235789999997 589999991 11 4999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCCCc
Q 042484 435 GLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDPG 494 (620)
Q Consensus 435 ALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~~~ 494 (620)
|||+|+||+|+|++||++|++||+++...+ .+++.||+|+||+.+|++..
T Consensus 370 ALl~~~~p~~s~~~vk~~L~~tA~~~~~~~----------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 370 ALLLQAHPSWTPDKVKTALIETADIVKPDE----------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHSBCSSGGG----------CSBTTTBTCBCCHHHHHTGG
T ss_pred HHHHHHCCCCCHHHHHHHHHhhCccCCCCC----------CCccCccCCccCHHHHhhhc
Confidence 999999999999999999999999875321 24678999999999999843
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-56 Score=481.29 Aligned_cols=354 Identities=18% Similarity=0.253 Sum_probs=263.2
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
+..+|+.+ |+||+|||||||||++||+|.+. .+.+.... ...+...+.|
T Consensus 13 ~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-------~~~~~~~~----------------------~~~~~~~~~d 61 (441)
T 1y9z_A 13 ATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-------NVTGTNNS----------------------GTGNWYQPGN 61 (441)
T ss_dssp CSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS-------EEEECCCT----------------------TSCCTTCCCS
T ss_pred hhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC-------cccCcccC----------------------CCCCCCCCCC
Confidence 35789865 77999999999999999999753 12221100 0012335678
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCC--eEEEEEeeeCCCCCCCHHHHHHHHHHHHhC-CCcEEeecH-
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKA--RVAGYKACWDGMGGCYDCDIIAAFDMAIHD-GVDMLSVSL- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~-gvdVIn~Sl- 221 (620)
+.||||||||||+|... +..+.||||+| +|+.+|++++. |.++.+++++||+||+++ |+|||||||
T Consensus 62 ~~gHGT~vAgiia~~~~---------~~g~~GvAP~a~~~l~~~kv~~~~-g~~~~~~~~~ai~~a~~~~g~~Vin~S~G 131 (441)
T 1y9z_A 62 NNAHGTHVAGTIAAIAN---------NEGVVGVMPNQNANIHIVKVFNEA-GWGYSSSLVAAIDTCVNSGGANVVTMSLG 131 (441)
T ss_dssp SCCHHHHHHHHHHCCCS---------SSBCCCSSCSSCSEEEEEECEETT-EECCSSCHHHHHHHHHHTTCCSEEEECCC
T ss_pred CCCcHHHHHHHHhcccC---------CCCceEecCCCCCEEEEEEEeCCC-CCcCHHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 89999999999999752 23478999995 99999999987 668888999999999999 999999999
Q ss_pred -------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeE--------------
Q 042484 222 -------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKR-------------- 280 (620)
Q Consensus 222 -------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~-------------- 280 (620)
+..++.++.++|++||+||||+|+.....+...+++|+|||++.+.....+...+....
T Consensus 132 ~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 132 GSGSTTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTV 211 (441)
T ss_dssp BSCCBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEEEECST
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCeeccccC
Confidence 56677788899999999999999876666666799999999987754333222222111
Q ss_pred ---------EEEeeccCCCC-CCCce------e-----------eEE------EccCCCcccccEEEEEe--c-----cc
Q 042484 281 ---------FKLISERAKGL-PSDKL------F-----------TFI------RTLDPKKVKGKILVCLN--V-----RS 320 (620)
Q Consensus 281 ---------~~g~~~~~~~~-~~~~~------~-----------~~~------~~~~~~~~~gkivl~~~--~-----~~ 320 (620)
+.|.+++.... +.... | .+. ..++..+++|||++|+| + ++
T Consensus 212 g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~~~ 291 (441)
T 1y9z_A 212 GEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPE 291 (441)
T ss_dssp TCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSSCTH
T ss_pred CCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEeccccCcccccH
Confidence 11122111000 00000 0 000 14567899999999999 3 56
Q ss_pred hhHHHHHHHcCCcEEEEecCCCCCCc------ccCCCccccEEEeecCCccee-eecccCCCcEEEEeCCceeecCCCCC
Q 042484 321 VDEGLQAALAGAADIVLVNLPEFGND------HTTDRHVLPASVITFNDGYYN-LFFTFTRHPVGYIKRPTTEFGAKPAP 393 (620)
Q Consensus 321 ~~~~~~~~~~ga~gvi~~~~~~~~~~------~~~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~~i~~~~~~~~~~~~~ 393 (620)
..|..+++++|+.|+|++++...... .......+|.+.|+..+|+.| .++... +++...
T Consensus 292 ~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~t~~~~---------- 357 (441)
T 1y9z_A 292 INSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----TTVSNQ---------- 357 (441)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----EEEEEE----------
T ss_pred HHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----cccccc----------
Confidence 78999999999999999988642111 112346789999999999999 877542 222110
Q ss_pred ceeeccCCCCCCCCCceeecCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHHHHHHHHcccccCCCCcceeccCCCC
Q 042484 394 YMAALSSKGPIHITPEILKRRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFT 473 (620)
Q Consensus 394 ~~a~FSS~GP~~~kPdi~a~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~ 473 (620)
..+.|..+||||||||||||++|||+|+||+|||++||++||+||++++..+
T Consensus 358 -------------------~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g--------- 409 (441)
T 1y9z_A 358 -------------------GNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAG--------- 409 (441)
T ss_dssp -------------------EEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS---------
T ss_pred -------------------cCCCceeecccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC---------
Confidence 2467999999999999999999999999999999999999999999876432
Q ss_pred CCCCceecccccCccccCCCceeeecCchhhHHhhhhcCCCc
Q 042484 474 EATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNK 515 (620)
Q Consensus 474 ~~~~~~~GaG~vn~~~A~~~~lv~~~~~~d~~~~~~~~~~~~ 515 (620)
.+.+||+|+||+.+|+ ||+.|+|+.++++
T Consensus 410 --~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~~ 438 (441)
T 1y9z_A 410 --RDNQTGYGMINAVAAK-----------AYLDESCTGPTDP 438 (441)
T ss_dssp --CBTTTBTCBCCHHHHH-----------HHHHHCTTCC---
T ss_pred --CcccccccccCHHHHH-----------HHHHhhhcCCCCC
Confidence 3567999999999996 4999999988643
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=458.70 Aligned_cols=312 Identities=25% Similarity=0.358 Sum_probs=244.2
Q ss_pred ccceeEEecceeeeEEEEcCHHHHHHHhcCCCeEEEEeceeeeeccCCCcc-----------ccCcccCCCCCCcccccc
Q 042484 4 AHAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWE-----------FLGLEQNGRIPPNSIWEK 72 (620)
Q Consensus 4 ~~~~~~~y~~~~~G~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~~~~~s~~-----------~~g~~~~~~~~~~~~~~~ 72 (620)
..+++++|.. |++|+++++++++++|+++|+|++|+|++.++++....+. .+++. .+....+|+.
T Consensus 23 g~~v~~~~~~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~---~i~~~~~w~~ 98 (395)
T 2z2z_A 23 GGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIE---RVKAPSVWSI 98 (395)
T ss_dssp TCEEEEECSS-SSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHH---HTTCGGGGGT
T ss_pred CCEEEEEecc-CCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchh---hcCHHHHHhh
Confidence 3578889975 8999999999999999999999999999998775432211 11111 1235689999
Q ss_pred CCCCCC--cEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCCh
Q 042484 73 ARYGED--IIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHG 150 (620)
Q Consensus 73 ~~~G~G--V~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHG 150 (620)
+ +|+| |+|||||||||++||+|.+. .+.+.. ++ .+ ....+..++.|+.|||
T Consensus 99 ~-~G~g~~v~VaViDtGid~~Hp~l~~~-------~~~~~~------------~~-~~------~~~~~~~~~~d~~gHG 151 (395)
T 2z2z_A 99 T-DGSVSVIQVAVLDTGVDYDHPDLAAN-------IAWCVS------------TL-RG------KVSTKLRDCADQNGHG 151 (395)
T ss_dssp C-SSCCTTCEEEEEESCBCTTCTTTGGG-------EEEEEE------------CG-GG------CCBCCHHHHBCSSSHH
T ss_pred c-CCCCCcEEEEEEcCCCCCCChhHhhc-------cccCcc------------cc-CC------cccCCCCCCCCCCCCH
Confidence 8 9999 99999999999999999752 111100 00 00 0000111246889999
Q ss_pred hhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC------------------
Q 042484 151 SHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD------------------ 212 (620)
Q Consensus 151 THVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~------------------ 212 (620)
|||||||+|.. +...+.||||+|+|+.+|++++. |.+..+++++||+||+++
T Consensus 152 T~vAgiia~~~---------n~~g~~GvAp~a~l~~~kv~~~~-g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~ 221 (395)
T 2z2z_A 152 THVIGTIAALN---------NDIGVVGVAPGVQIYSVRVLDAR-GSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPD 221 (395)
T ss_dssp HHHHHHHHCCC---------SSSSCCCSSTTCEEEEEECSCTT-SEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTT
T ss_pred HHHHHHHHeec---------CCCceEEECCCCEEEEEEEecCC-CCccHHHHHHHHHHHHhCcccccccccccccccccc
Confidence 99999999874 12447899999999999999887 678889999999999998
Q ss_pred --CCcEEeecH--------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEE
Q 042484 213 --GVDMLSVSL--------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFK 282 (620)
Q Consensus 213 --gvdVIn~Sl--------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~ 282 (620)
+++|||||| +..++.++.++|+++|+||||+|......+...+++|+|||++.+
T Consensus 222 ~~~~~Vin~S~G~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------- 285 (395)
T 2z2z_A 222 DDAAEVISMSLGGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN---------------- 285 (395)
T ss_dssp SCCCSEEEECEEBSCCCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT----------------
T ss_pred CCCCeEEEecCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecCC----------------
Confidence 999999999 666777888999999999999997666666667999999995422
Q ss_pred EeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecC
Q 042484 283 LISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFN 362 (620)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~ 362 (620)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCC--ceee--cCCCcEEeccccchhhhhhhhhhhhc
Q 042484 363 DGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITP--EILK--RRIPFNSISGTSMSGPYISGIAGLPK 438 (620)
Q Consensus 363 ~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kP--di~a--~~~~y~~~sGTSMAaP~VAG~aALl~ 438 (620)
+.++.||++||....| +|+. +++.|..++|||||||||||++|||+
T Consensus 286 ------------------------------~~~a~fS~~G~~v~APG~~i~s~~~~~~y~~~sGTS~AaP~VaG~aAll~ 335 (395)
T 2z2z_A 286 ------------------------------DNIASFSNRQPEVSAPGVDILSTYPDDSYETLMGTAMATPHVSGVVALIQ 335 (395)
T ss_dssp ------------------------------SCBCTTSCSSCSEEEECSSEEEEETTTEEEEEESHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCCcccCCCCCEEeCCCCeeeecCCCceEecCCHHHHHHHHHHHHHHHH
Confidence 2345678888754333 2322 56789999999999999999999999
Q ss_pred ccCC-------------CCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCCC
Q 042484 439 ILHP-------------DWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDP 493 (620)
Q Consensus 439 ~~~P-------------~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~~ 493 (620)
|++| +|++.+||++|++||+++... ..+..||+|+||+.+|++.
T Consensus 336 ~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 336 AAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT-----------GWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS-----------SSBTTTBTCBCCHHHHHHH
T ss_pred HhCccccccccccccccCCCHHHHHHHHHhhccccCCC-----------CCCCCccCceeCHHHHHHH
Confidence 9999 999999999999999987432 2357899999999999873
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-52 Score=456.07 Aligned_cols=312 Identities=15% Similarity=0.202 Sum_probs=240.3
Q ss_pred cceeEEecceeeeEEEEcCHHHHHHHhc-CCCeEEEEeceeeeeccCCC-------------ccccCcccCCCCCCcccc
Q 042484 5 HAIFYSYTRHINGFAAKLADAVAAEMAK-HPKVVSVFLSKEKKLHTTHS-------------WEFLGLEQNGRIPPNSIW 70 (620)
Q Consensus 5 ~~~~~~y~~~~~G~s~~~~~~~~~~L~~-~~~V~~v~~~~~~~~~~~~s-------------~~~~g~~~~~~~~~~~~~ 70 (620)
.++++.|.. |++|+++++++++++|++ +|+|++|++++.+++..... |.+..+.. ...+|
T Consensus 66 ~~v~~~~~~-~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~-----~~~~~ 139 (471)
T 3t41_A 66 LNVVYNIPE-LHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITN-----NGASY 139 (471)
T ss_dssp CEEEEEEGG-GTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTT-----TTGGG
T ss_pred CEEEEecCC-ccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccC-----cHHHH
Confidence 466778855 999999999999999999 99999999998887754432 22222211 13799
Q ss_pred ccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCCh
Q 042484 71 EKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHG 150 (620)
Q Consensus 71 ~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHG 150 (620)
+.+.+|+||+|||||||||++||+|.+. .+.+....-. ..+|.........+...+.|+.|||
T Consensus 140 ~~~~~G~gv~VaViDtGid~~Hp~~~~~-------~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~d~~gHG 202 (471)
T 3t41_A 140 DDLPKHANTKIAIIDTGVMKNHDDLKNN-------FSTDSKNLVP----------LNGFRGTEPEETGDVHDVNDRKGHG 202 (471)
T ss_dssp GGCCSSCCCCEEEEESCCCTTCTTTTTT-------BCTTCEECCC----------TTCGGGCCTTCCCCTTCCCCSSSHH
T ss_pred hccCCCCCcEEEEEeCCCCCCChhHhcC-------cccCCccccc----------CCCccCCCcccCCCCCCCcCCCCcc
Confidence 9999999999999999999999999863 1111100000 0011000011112334578899999
Q ss_pred hhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH---------
Q 042484 151 SHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--------- 221 (620)
Q Consensus 151 THVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--------- 221 (620)
|||||||+|+. .+.||||+|+|+++|++++. .+..+++++||++|+++|++||||||
T Consensus 203 T~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~~--~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~ 268 (471)
T 3t41_A 203 TMVSGQTSANG------------KLIGVAPNNKFTMYRVFGSK--KTELLWVSKAIVQAANDGNQVINISVGSYIILDKN 268 (471)
T ss_dssp HHHHHHHHCBS------------SSBCSSTTSCEEEEECCSSS--CCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTT
T ss_pred chhhheeecCC------------ceeEECCCCeEEEEEeccCC--CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccc
Confidence 99999999763 37899999999999999875 58899999999999999999999998
Q ss_pred ---------------HHHHHHHHHhcCcEEEEecCCCCCCCCc------------------cCCCCCceEEecccccCCc
Q 042484 222 ---------------VAIGSFHAVQHGIVVVCSDGNEGLVDVT------------------LQNAAPRQIVVGASTMDRD 268 (620)
Q Consensus 222 ---------------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t------------------~~~~ap~vitVga~~~~~~ 268 (620)
+..++..+.++|++||+||||+|..... .+..++++|+|||++.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~~-- 346 (471)
T 3t41_A 269 DHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQK-- 346 (471)
T ss_dssp CCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECTT--
T ss_pred cccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeCCC--
Confidence 2345567778999999999999975432 33456889999885422
Q ss_pred ccceEEeCCCeEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCccc
Q 042484 269 LSNYVVLGNNKRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHT 348 (620)
Q Consensus 269 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~ 348 (620)
T Consensus 347 -------------------------------------------------------------------------------- 346 (471)
T 3t41_A 347 -------------------------------------------------------------------------------- 346 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEeecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceeec---------------
Q 042484 349 TDRHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILKR--------------- 413 (620)
Q Consensus 349 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a~--------------- 413 (620)
+.++.||++||+. |||+|+
T Consensus 347 --------------------------------------------~~~a~fS~~G~~~--~di~APG~~i~~~~~~g~~~~ 380 (471)
T 3t41_A 347 --------------------------------------------SNLSEFSNFGMNY--TDIAAPGGSFAYLNQFGVDKW 380 (471)
T ss_dssp --------------------------------------------SSBCTTCCBCTTT--CCEEEECCCCHHHHHHHHHHH
T ss_pred --------------------------------------------CCCCCccCCCCCC--CeEEecCCCcccccccccccc
Confidence 2356788888864 666663
Q ss_pred ----------------CCCcEEeccccchhhhhhhhhhhhcccCC-CCCHHHHHHHHHcccccCCCCcceeccCCCCCCC
Q 042484 414 ----------------RIPFNSISGTSMSGPYISGIAGLPKILHP-DWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476 (620)
Q Consensus 414 ----------------~~~y~~~sGTSMAaP~VAG~aALl~~~~P-~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~ 476 (620)
++.|..++|||||||||||++|||+|++| +++|++||++|++||++... .+
T Consensus 381 ~~~~~~~~~~i~s~~~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~------------~~ 448 (471)
T 3t41_A 381 MNEGYMHKENILTTANNGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN------------KP 448 (471)
T ss_dssp HHTTTHHHHSEEEECTTSSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC------------CC
T ss_pred cccccccCceeEecCCCCCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC------------CC
Confidence 35789999999999999999999999999 89999999999999987532 34
Q ss_pred CceecccccCccccCCC
Q 042484 477 PFSYGAGHVQPNLAMDP 493 (620)
Q Consensus 477 ~~~~GaG~vn~~~A~~~ 493 (620)
...||+|+||+.+|++.
T Consensus 449 ~~~~G~G~vd~~~Al~~ 465 (471)
T 3t41_A 449 FSRYGHGELDVYKALNV 465 (471)
T ss_dssp HHHHTTCBBCHHHHTTT
T ss_pred cCccccChhCHHHHHHH
Confidence 67899999999999984
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=447.39 Aligned_cols=322 Identities=20% Similarity=0.188 Sum_probs=229.5
Q ss_pred cceeEEecceeeeEEEEcCH---HH-HHHHhc--CCCeEEEEeceeeeeccC----CCcc--------------------
Q 042484 5 HAIFYSYTRHINGFAAKLAD---AV-AAEMAK--HPKVVSVFLSKEKKLHTT----HSWE-------------------- 54 (620)
Q Consensus 5 ~~~~~~y~~~~~G~s~~~~~---~~-~~~L~~--~~~V~~v~~~~~~~~~~~----~s~~-------------------- 54 (620)
.++.+.+. .+++++++++. ++ +++|++ +|+|++|+|++.+++... ....
T Consensus 53 ~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (671)
T 1r6v_A 53 GKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEEL 131 (671)
T ss_dssp CEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTT
T ss_pred CeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCcccccccccccccccccccccccc
Confidence 35666664 47899999864 33 466764 899999999987655310 0000
Q ss_pred ---ccCcccCCCCCCccc-cccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCcccccccc
Q 042484 55 ---FLGLEQNGRIPPNSI-WEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYA 130 (620)
Q Consensus 55 ---~~g~~~~~~~~~~~~-~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~ 130 (620)
.+++. .+.+..+ |+. .+|+||+|||||||||++||+|.+. .+.+... +.+..
T Consensus 132 ~~~~W~l~---~I~~~~a~w~~-~tG~gV~VAVIDTGVd~~HpdL~~~-------~~~g~~~------------~~~~~- 187 (671)
T 1r6v_A 132 SNELWGLE---AIGVTQQLWEE-ASGTNIIVAVVDTGVDGTHPDLEGQ-------VIAGYRP------------AFDEE- 187 (671)
T ss_dssp GGGCHHHH---HTTCCHHHHHH-CSCTTCEEEEEESCCBTTSGGGTTT-------BCCEEEG------------GGTEE-
T ss_pred cccCCchh---ccCCchhhhhc-cCCCCCEEEEEeCCCCCCCcccccc-------EEecccc------------cCCCc-
Confidence 01111 1234566 888 8999999999999999999999863 1111110 00000
Q ss_pred ccCCCCCCCCCCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeC-----CCCCCCHHHHHHH
Q 042484 131 VHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWD-----GMGGCYDCDIIAA 205 (620)
Q Consensus 131 ~~~~~~~~~~~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~-----~~g~~~~~~i~~a 205 (620)
.....+..|..||||||||||||.. ++..+.||||+|+|+.+|++.. ..+....+.+++|
T Consensus 188 ------~p~~~d~~d~~gHGThVAGiIAa~~---------ng~gv~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~a 252 (671)
T 1r6v_A 188 ------LPAGTDSSYGGSAGTHVAGTIAAKK---------DGKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAG 252 (671)
T ss_dssp ------ECTTCBCCTTCSHHHHHHHHHHCCC---------SSSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHH
T ss_pred ------CCCCCCCccCCCcchhhhhhhhccC---------CCCceEEECCCCEEEEEEeccCccccCCCCccCHHHHHHH
Confidence 0011234567899999999999874 1234789999999999999986 1134556789999
Q ss_pred HHHHHhCCCcEEeecH--------HHHHHHHHHhcCcEEEEecCCCCCCC-CccCCCCCceEEecccccCCcccceEEeC
Q 042484 206 FDMAIHDGVDMLSVSL--------VAIGSFHAVQHGIVVVCSDGNEGLVD-VTLQNAAPRQIVVGASTMDRDLSNYVVLG 276 (620)
Q Consensus 206 i~~a~~~gvdVIn~Sl--------~~~~~~~a~~~Gv~vV~AAGN~G~~~-~t~~~~ap~vitVga~~~~~~~~~~~~~g 276 (620)
|+||+++|++|||||| +..+...|.++|+++|+||||+|... ...+...|++|+|||++.+...
T Consensus 253 i~~A~~~gadVIN~SlG~~~~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~~------- 325 (671)
T 1r6v_A 253 IIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGGT------- 325 (671)
T ss_dssp HHHHHHTTCSEEEECEEBSCCCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETTE-------
T ss_pred HHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCCc-------
Confidence 9999999999999999 66777788899999999999999654 3344456999999997543220
Q ss_pred CCeEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccE
Q 042484 277 NNKRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPA 356 (620)
Q Consensus 277 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~ 356 (620)
T Consensus 326 -------------------------------------------------------------------------------- 325 (671)
T 1r6v_A 326 -------------------------------------------------------------------------------- 325 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee------------------------
Q 042484 357 SVITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK------------------------ 412 (620)
Q Consensus 357 ~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a------------------------ 412 (620)
..++.||++||. +||.|
T Consensus 326 ------------------------------------~~~a~fSn~G~~---vdv~APG~~I~St~p~~~~~g~~~~~~~~ 366 (671)
T 1r6v_A 326 ------------------------------------FRVAGFSSRSDG---VSVGAPGVTILSTVPGEDSIGYEGHNENV 366 (671)
T ss_dssp ------------------------------------EEECSSSCCCTT---EEEEEECSSEEEECCCTTSTTCCCCCTTC
T ss_pred ------------------------------------eeeccccCCCCC---eeEEecCCCEEeecCCCCccccccccccc
Confidence 001122222221 11111
Q ss_pred ---cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccc
Q 042484 413 ---RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNL 489 (620)
Q Consensus 413 ---~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~ 489 (620)
..+.|..++|||||||||||++|||+|++|+|+|+|||++|++||+++... ..+..||+|+||+.+
T Consensus 367 ~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~-----------g~d~~~G~G~vna~~ 435 (671)
T 1r6v_A 367 PATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDA 435 (671)
T ss_dssp CCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBCCHHH
T ss_pred cccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCC-----------CCCCCcccceeCHHH
Confidence 235799999999999999999999999999999999999999999987532 234689999999999
Q ss_pred cCCCceeeecCchh
Q 042484 490 AMDPGLVYYLTVND 503 (620)
Q Consensus 490 A~~~~lv~~~~~~d 503 (620)
|++..|..+....+
T Consensus 436 Al~~~l~~~~~~~~ 449 (671)
T 1r6v_A 436 ALQGPLPTQGGVEE 449 (671)
T ss_dssp HHHCCCCSSSEEEE
T ss_pred HhhhhcCCCCCccc
Confidence 99977765544333
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-51 Score=454.54 Aligned_cols=321 Identities=15% Similarity=0.159 Sum_probs=40.6
Q ss_pred cceeEEecceeeeEEEEcCHHHHHHHhcCCCeEEEEeceeeeeccCCCccccCcccCCCCCCccccccCCCCCCcEEEEe
Q 042484 5 HAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTHSWEFLGLEQNGRIPPNSIWEKARYGEDIIIGNL 84 (620)
Q Consensus 5 ~~~~~~y~~~~~G~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~G~GV~VgVI 84 (620)
.++++.|+++|+||+++++++++++|+++|+|++|+|++.+..+ ...|.+-.+.... .....|..+.+|+||+||||
T Consensus 109 ~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~-~~pWgL~~i~~~~--~~~~~w~~~~~G~GV~VaVI 185 (692)
T 2p4e_P 109 TKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQ-SIPWNLERITPPR--YRADEYQPPDGGSLVEVYLL 185 (692)
T ss_dssp CEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC------------------------------------
T ss_pred cceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccC-CCCcchhhccccc--ccccccccCCCCCCcEEEEE
Confidence 47899999999999999999999999999999999999987653 2233322221110 01247888899999999999
Q ss_pred ccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhhcccCCCC
Q 042484 85 DTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAG 164 (620)
Q Consensus 85 DTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiaag~~~~~ 164 (620)
|||||++||+|.+... |.+ .+ .+.+. ++ .....++.|..||||||||||+|+.
T Consensus 186 DTGId~~HpdL~gr~~------~~~-----~~-------~~~d~----dg--~~~~~~~~D~~GHGTHVAGiIAg~~--- 238 (692)
T 2p4e_P 186 DTSIQSDHREIEGRVM------VTD-----FE-------NVPEE----DG--TRFHRQASKCDSHGTHLAGVVSGRD--- 238 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCChhhcCceE------ecc-----cc-------cccCC----CC--CcccCCCCCCCCcHHHhhhHhhcCC---
Confidence 9999999999986311 110 00 00000 00 0001346789999999999999762
Q ss_pred CceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC------CCcEEeecH-------HHHHHHHHHh
Q 042484 165 ASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD------GVDMLSVSL-------VAIGSFHAVQ 231 (620)
Q Consensus 165 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~------gvdVIn~Sl-------~~~~~~~a~~ 231 (620)
.||||+|+|+++|++++. |.++.+++++||+|++++ +++|||||| +..++..+.+
T Consensus 239 -----------~GVAP~A~L~~vKVl~~~-G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~s~~l~~Ai~~A~~ 306 (692)
T 2p4e_P 239 -----------AGVAKGASMRSLRVLNCQ-GKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQRLAR 306 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------CccCCCCEEEEEEeecCC-CCCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCCcHHHHHHHHHHHH
Confidence 699999999999999987 778899999999999986 899999999 5566677889
Q ss_pred cCcEEEEecCCCCCCCCcc-CCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeEEEccCCCcccc
Q 042484 232 HGIVVVCSDGNEGLVDVTL-QNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTFIRTLDPKKVKG 310 (620)
Q Consensus 232 ~Gv~vV~AAGN~G~~~~t~-~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 310 (620)
+|++||+||||+|++.... +...|++|+|||++.+....
T Consensus 307 ~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~a---------------------------------------- 346 (692)
T 2p4e_P 307 AGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPV---------------------------------------- 346 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCcc----------------------------------------
Confidence 9999999999999754332 44569999999965332100
Q ss_pred cEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEEeCCceeecCC
Q 042484 311 KILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAK 390 (620)
Q Consensus 311 kivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~ 390 (620)
T Consensus 347 -------------------------------------------------------------------------------- 346 (692)
T 2p4e_P 347 -------------------------------------------------------------------------------- 346 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeeccCCCCCCCCCceee-----------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHHHHHHHHccccc
Q 042484 391 PAPYMAALSSKGPIHITPEILK-----------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459 (620)
Q Consensus 391 ~~~~~a~FSS~GP~~~kPdi~a-----------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~ 459 (620)
..-+.||++|| +|||.| ....|..++|||||||||||++|||+|++|+|+|+|||++|++||.+
T Consensus 347 --~~ss~fSn~G~---~vDI~APG~~I~St~~~~~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~ 421 (692)
T 2p4e_P 347 --TLGTLGTNFGR---CVDLFAPGEDIIGASSDCSTCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAK 421 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --ccccccCCCCC---ceeEEecCCcEEeeccCCCCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccc
Confidence 00012677776 566666 12578999999999999999999999999999999999999999976
Q ss_pred CCCCcceecc------CC---CCCCCCceecccc--cCccccCC
Q 042484 460 QDNKKQQILD------AS---FTEATPFSYGAGH--VQPNLAMD 492 (620)
Q Consensus 460 ~~~~~~~~~~------~~---~~~~~~~~~GaG~--vn~~~A~~ 492 (620)
......++.. .+ ..+.....+|+|+ .|++.+..
T Consensus 422 ~~~~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~~~s 465 (692)
T 2p4e_P 422 DVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 465 (692)
T ss_dssp --------------------------------------------
T ss_pred cccCCCCCccccCCCCcceeecCCCccccCCCCccccccccccC
Confidence 4322111100 00 0111345678888 77777654
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-51 Score=430.35 Aligned_cols=281 Identities=18% Similarity=0.164 Sum_probs=186.0
Q ss_pred ccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccc----cc-cc-cCCCCCCCC
Q 042484 67 NSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQ----DY-AV-HKGPLNSSF 140 (620)
Q Consensus 67 ~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~----~~-~~-~~~~~~~~~ 140 (620)
.++|+++..|+||+|||||||||++||+|++....+....|...++.........+.++.+ ++ .. .......+.
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEAVIPDT 100 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHCTTT
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCccccccccccccccccCCC
Confidence 4899999999999999999999999999998666556666665444222100000000000 00 00 000001122
Q ss_pred CCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCC----CCCCHHHHHHHHHHHHhCCCcE
Q 042484 141 YSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGM----GGCYDCDIIAAFDMAIHDGVDM 216 (620)
Q Consensus 141 ~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~----g~~~~~~i~~ai~~a~~~gvdV 216 (620)
.++.|++||||||||||||+. +..+.||||+|+|+.+|++.... +.+...+++++|++|++.|++|
T Consensus 101 ~~~~D~~gHGThVAGiiag~~----------~~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~V 170 (357)
T 4h6x_A 101 KDRIVLNDHACHVTSTIVGQE----------HSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANI 170 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCCT----------TSSCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCSE
T ss_pred CCCcCCCCcHHHHHHHHhccC----------CCCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCCE
Confidence 344577899999999999875 23478999999999999975432 2344567899999999999999
Q ss_pred EeecH------------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEEEe
Q 042484 217 LSVSL------------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLI 284 (620)
Q Consensus 217 In~Sl------------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~ 284 (620)
||||| +..+..++.++|+++|+||||+|......+...|++|+|||++.+
T Consensus 171 in~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------ 232 (357)
T 4h6x_A 171 IHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD------------------ 232 (357)
T ss_dssp EEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT------------------
T ss_pred EeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC------------------
Confidence 99999 455667788999999999999997666666667899999995422
Q ss_pred eccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCc
Q 042484 285 SERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDG 364 (620)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g 364 (620)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee----------cCCCcEEeccccchhhhhhhhh
Q 042484 365 YYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK----------RRIPFNSISGTSMSGPYISGIA 434 (620)
Q Consensus 365 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a----------~~~~y~~~sGTSMAaP~VAG~a 434 (620)
+.++.||+||+...||||+| .++.|..++|||||||||||++
T Consensus 233 ----------------------------~~~~~fSn~G~~~~~~di~APG~~i~s~~~~~~~~~~~sGTS~AaP~vaG~~ 284 (357)
T 4h6x_A 233 ----------------------------GTPCHFSNWGGNNTKEGILAPGEEILGAQPCTEEPVRLTGTSMAAPVMTGIS 284 (357)
T ss_dssp ----------------------------SSBCTTCC---CTTTTEEEEECSSEEECCTTCSCCEEECSHHHHHHHHHHHH
T ss_pred ----------------------------CcccccccCCCCCCccceeecCCCeEeccCCCCcccccCcHHHHHHHHHHHH
Confidence 23567999999989999998 3445678999999999999999
Q ss_pred hhhcc----cCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 435 GLPKI----LHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 435 ALl~~----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
|||++ ++|.|+++|||++|++||++++... ...+.+||+|+||+.+|++
T Consensus 285 All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~---------~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 285 ALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV---------VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHC-----------------------CTTCBCCHHHHHH
T ss_pred HHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC---------CCCcccceeEEecHHHHHH
Confidence 99995 5678999999999999999875321 2345789999999999987
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-49 Score=400.39 Aligned_cols=241 Identities=25% Similarity=0.373 Sum_probs=197.4
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
+..+|+.+++|+||+|||||||||++||+|+.. .+. .+ . .....+.|
T Consensus 13 ~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~~---------~g~-----------------~~-~------~~~~~~~d 59 (274)
T 1r0r_E 13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLNVV---------GGA-----------------SF-V------AGEAYNTD 59 (274)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE---------EEE-----------------EC-S------TTCCTTCC
T ss_pred CHHHHhcCCCCCCCEEEEEcCCCCCCCHhHcCC---------CCc-----------------cc-c------CCCCCCCC
Confidence 458999999999999999999999999999510 010 01 0 01122567
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---- 221 (620)
..||||||||||+|.. +...+.||||+|+|+.+|++... +.+..++++++|+||++++++||||||
T Consensus 60 ~~gHGT~vAgiia~~~---------~~~g~~GvAp~a~l~~~~v~~~~-g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~ 129 (274)
T 1r0r_E 60 GNGHGTHVAGTVAALD---------NTTGVLGVAPSVSLYAVKVLNSS-GSGSYSGIVSGIEWATTNGMDVINMSLGGAS 129 (274)
T ss_dssp SSSHHHHHHHHHHCCS---------SSSBCCCSSTTSEEEEEECSCTT-SEECHHHHHHHHHHHHHTTCSEEEECEEBSS
T ss_pred CCCCHHHHHHHHHccC---------CCCceEEECCCCEEEEEEEECCC-CCccHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 8999999999999874 22457899999999999999877 678889999999999999999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCC----CccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCC
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVD----VTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPS 293 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~----~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 293 (620)
+..+..++.++|+++|+||||+|... ...+...+++|+||+++.+
T Consensus 130 ~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 182 (274)
T 1r0r_E 130 GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN--------------------------- 182 (274)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT---------------------------
T ss_pred CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC---------------------------
Confidence 66777788899999999999999652 2223345889999985421
Q ss_pred CceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccC
Q 042484 294 DKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFT 373 (620)
Q Consensus 294 ~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 373 (620)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCC
Q 042484 374 RHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDW 444 (620)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~ 444 (620)
+.++.||++|| +|||+| +.+.|..++|||||||||||++|||+|++|++
T Consensus 183 -------------------~~~~~~S~~G~---~~di~APG~~i~s~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~l 240 (274)
T 1r0r_E 183 -------------------SNRASFSSVGA---ELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNL 240 (274)
T ss_dssp -------------------SCBCTTCCCST---TEEEEEECSSEEEEETTTEEEEECSHHHHHHHHHHHHHHHHHHSTTC
T ss_pred -------------------CCcCccCCCCC---CceEEeCCCCeEeecCCCCEEEeccHHHHHHHHHHHHHHHHHHCCCC
Confidence 22456888887 577777 45679999999999999999999999999999
Q ss_pred CHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 445 SPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 445 sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
+++|||++|++||+++. ++..||+|+||+.+|++
T Consensus 241 t~~~v~~~L~~tA~~~g--------------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 241 SASQVRNRLSSTATYLG--------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp CHHHHHHHHHHTCBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred CHHHHHHHHHHhCcccC--------------CCCCcccCccCHHHHhC
Confidence 99999999999998762 35689999999999985
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=395.94 Aligned_cols=240 Identities=25% Similarity=0.369 Sum_probs=198.3
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
+..+|+.+++|+||+|+|||||| .+||+|+.. .+ . ++ . ....++.|
T Consensus 13 ~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~~~---------~~-----~------------~~-~------~~~~~~~d 58 (269)
T 1gci_A 13 APAAHNRGLTGSGVKVAVLDTGI-STHPDLNIR---------GG-----A------------SF-V------PGEPSTQD 58 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCC-CCCTTCCEE---------EE-----E------------EC-S------TTCCSCSC
T ss_pred cHHHHhcCCCCCCCEEEEECCCC-CCCHhhccc---------CC-----c------------cc-C------CCCCCCCC
Confidence 45899999999999999999999 899999510 00 0 01 0 01123568
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---- 221 (620)
..||||||||||+|.. +...+.||||+|+|+.+|++... +.+..+++++||+||++++++||||||
T Consensus 59 ~~gHGT~vAgiia~~~---------~~~~~~GvAp~a~l~~~~v~~~~-g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~ 128 (269)
T 1gci_A 59 GNGHGTHVAGTIAALN---------NSIGVLGVAPSAELYAVKVLGAS-GSGSVSSIAQGLEWAGNNGMHVANLSLGSPS 128 (269)
T ss_dssp SSSHHHHHHHHHHCCC---------SSSBCCCSSTTCEEEEEECBCTT-SCBCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred CCCChHHHHHHHhcCc---------CCCCcEEeCCCCEEEEEEeECCC-CCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC
Confidence 8999999999999874 22457899999999999999887 678899999999999999999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCcee
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLF 297 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 297 (620)
+..+..++.++|+++|+||||+|......+...+++|+||+++.+
T Consensus 129 ~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------- 177 (269)
T 1gci_A 129 PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN------------------------------- 177 (269)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-------------------------------
T ss_pred CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC-------------------------------
Confidence 667777888999999999999997655556667899999995421
Q ss_pred eEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcE
Q 042484 298 TFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPV 377 (620)
Q Consensus 298 ~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 377 (620)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHH
Q 042484 378 GYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAA 448 (620)
Q Consensus 378 ~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ 448 (620)
+.++.||++||. |||+| +++.|..++|||||||||||++|||+|++|+|+++|
T Consensus 178 ---------------~~~~~~S~~G~~---~di~APG~~i~s~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~ 239 (269)
T 1gci_A 178 ---------------NNRASFSQYGAG---LDIVAPGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQ 239 (269)
T ss_dssp ---------------SCBCTTCCCSTT---EEEEEECSSEEEEETTTEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred ---------------CCCCCCCCCCCC---cceEecCCCeEeecCCCCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 224567888873 56666 456799999999999999999999999999999999
Q ss_pred HHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 449 VQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 449 ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
||++|++||+++. ++..||+|+||+.+|++
T Consensus 240 v~~~L~~tA~~~g--------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 240 IRNHLKNTATSLG--------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHHHHTSBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred HHHHHHHhCccCC--------------CCCCcccCccCHHHHcC
Confidence 9999999999763 35689999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=398.56 Aligned_cols=243 Identities=26% Similarity=0.384 Sum_probs=198.5
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
+..+|..+++|+||+|||||||||++||+|+.. .+. .+ ...+..+..|
T Consensus 13 ~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~~---------~g~-----------------~~------~~~~~~~~~d 60 (281)
T 1to2_E 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA---------GGA-----------------SM------VPSETNPFQD 60 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE---------EEE-----------------EC------CTTCCCTTCC
T ss_pred hHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcCc---------CCc-----------------cc------cCCCCCCCCC
Confidence 458999999999999999999999999999521 010 00 0001112367
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---- 221 (620)
..||||||||||+|.. +...+.||||+|+|+.+|++... +.+..++++++|+||++++++||||||
T Consensus 61 ~~gHGT~vAgiia~~~---------~~~g~~GvAp~a~l~~~kv~~~~-g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~ 130 (281)
T 1to2_E 61 NNSHGTHVAGTVAALN---------NSIGVLGVAPSASLYAVKVLGAD-GSGQYSWIINGIEWAIANNMDVINMSLGGPS 130 (281)
T ss_dssp SSSHHHHHHHHHHCCS---------SSSSBCCSSTTSEEEEEECSCTT-SEECHHHHHHHHHHHHHTTCSEEEECEEBSC
T ss_pred CCCcHHHHHHHHhccC---------CCCcceeeCCCCEEEEEEEeCCC-CCccHHHHHHHHHHHHHCCCcEEEECCcCCC
Confidence 8999999999999874 22447899999999999999877 667889999999999999999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCC----CccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCC
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVD----VTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPS 293 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~----~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 293 (620)
+..++..+.++|+++|+||||+|... ...+...|++|+|||++.+
T Consensus 131 ~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 183 (281)
T 1to2_E 131 GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS--------------------------- 183 (281)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT---------------------------
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC---------------------------
Confidence 66777788899999999999999652 2223345889999985321
Q ss_pred CceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccC
Q 042484 294 DKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFT 373 (620)
Q Consensus 294 ~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 373 (620)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCC
Q 042484 374 RHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDW 444 (620)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~ 444 (620)
+.++.||++|| +|||+| +++.|..++|||||||||||++|||+|++|+|
T Consensus 184 -------------------~~~~~fS~~G~---~~di~APG~~i~s~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~l 241 (281)
T 1to2_E 184 -------------------NQRASFSSVGP---ELDVMAPGVSIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNW 241 (281)
T ss_dssp -------------------SCBCTTCCCST---TCCEEEECSSEEEEETTTEEEEECBHHHHHHHHHHHHHHHHHHSTTC
T ss_pred -------------------CCcCCcCCCCC---CceEEecCCCeEeecCCCCEEecCcHHHHHHHHHHHHHHHHHhCCCC
Confidence 23457888888 567777 45679999999999999999999999999999
Q ss_pred CHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCCC
Q 042484 445 SPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDP 493 (620)
Q Consensus 445 sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~~ 493 (620)
+++|||++|++||+++. +++.||+|+||+.+|+++
T Consensus 242 t~~~v~~~L~~tA~~~g--------------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 242 TNTQVRSSLENTTTKLG--------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp CHHHHHHHHHTTCBCCS--------------CHHHHTTCBCCHHHHTSS
T ss_pred CHHHHHHHHHhhCcccC--------------CCCCcccceecHHHHhhh
Confidence 99999999999998762 356899999999999984
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-48 Score=395.04 Aligned_cols=243 Identities=23% Similarity=0.291 Sum_probs=193.1
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
+..+|+.+..|+||+|||||||||++||+|.+. ...+. ++ .....++.|
T Consensus 20 ~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~------------~~~~~------------~~-------~~~~~~~~d 68 (280)
T 1dbi_A 20 TDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK------------VIKGY------------DF-------VDNDYDPMD 68 (280)
T ss_dssp HHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT------------EEEEE------------ET-------TTTBSCCCC
T ss_pred cHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC------------cccce------------ec-------cCCCCCCCC
Confidence 468999988888999999999999999999753 00000 11 011234678
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---- 221 (620)
..||||||||||+|...+ ...+.||||+|+|+.+|++..+ |.+..+++++||++|++.|++||||||
T Consensus 69 ~~gHGT~vAgiia~~~~~--------~~g~~GvAp~a~l~~~kv~~~~-g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~ 139 (280)
T 1dbi_A 69 LNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRN-GSGTLSDIADAIIYAADSGAEVINLSLGCDC 139 (280)
T ss_dssp SSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTT-SCCCHHHHHHHHHHHHHTTCSEEEECCSSCC
T ss_pred CCCcHHHHHHHHhCcCCC--------CCcceEeCCCCEEEEEEEECCC-CCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 899999999999987533 2347899999999999999887 678899999999999999999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCcee
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLF 297 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 297 (620)
+..+..++.++|+++|+||||+|......+...+++|+|||++.+
T Consensus 140 ~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------- 188 (280)
T 1dbi_A 140 HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY------------------------------- 188 (280)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-------------------------------
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC-------------------------------
Confidence 667777888999999999999997655555667899999995422
Q ss_pred eEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcE
Q 042484 298 TFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPV 377 (620)
Q Consensus 298 ~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 377 (620)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHH
Q 042484 378 GYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAA 448 (620)
Q Consensus 378 ~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ 448 (620)
+.++.||++|| +|||+| +++.|..++|||||||||||++|||++ |++++.|
T Consensus 189 ---------------~~~~~~S~~G~---~~dv~ApG~~i~s~~~~~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~ 248 (280)
T 1dbi_A 189 ---------------DRLASFSNYGT---WVDVVAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLAS--QGRNNIE 248 (280)
T ss_dssp ---------------SCBCTTBCCST---TCCEEEECSSEEEEETTTEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHH
T ss_pred ---------------CCcCCCCCCCC---CceEEEecCCeEeecCCCCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHH
Confidence 22456888886 467776 456899999999999999999999987 9999999
Q ss_pred HHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 449 VQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 449 ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
||++|++||+++.. ....||+|+||+.+|++
T Consensus 249 v~~~L~~ta~~~~~-------------~~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 249 IRQAIEQTADKISG-------------TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp HHHHHHHTSBCCTT-------------BTTTBSSEECCHHHHHT
T ss_pred HHHHHHHhCccCCC-------------CCCcccCCEECHHHHhc
Confidence 99999999998742 12469999999999986
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-48 Score=405.24 Aligned_cols=248 Identities=24% Similarity=0.324 Sum_probs=196.1
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
+..+|+.+++|+||+|||||||||++||+|.+. ...+. .|..++ ..+.....|
T Consensus 30 ~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~------------~~~~~--------~~~~~~-------~~~~~~~~d 82 (327)
T 2x8j_A 30 APAVWRASAKGAGQIIGVIDTGCQVDHPDLAER------------IIGGV--------NLTTDY-------GGDETNFSD 82 (327)
T ss_dssp HHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG------------EEEEE--------ECSSGG-------GGCTTCCCC
T ss_pred hHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc------------ccCCc--------cccCCC-------CCCCCCCCC
Confidence 458999999999999999999999999999752 11000 011111 001223568
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh------CCCcEEee
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH------DGVDMLSV 219 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~------~gvdVIn~ 219 (620)
+.||||||||||+|.. ++..+.||||+|+|+.+|++... |.+..+++++||++|++ .+++||||
T Consensus 83 ~~gHGT~VAgiia~~~---------~~~g~~GvAp~a~l~~~kv~~~~-g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin~ 152 (327)
T 2x8j_A 83 NNGHGTHVAGTVAAAE---------TGSGVVGVAPKADLFIIKALSGD-GSGEMGWIAKAIRYAVDWRGPKGEQMRIITM 152 (327)
T ss_dssp SSSHHHHHHHHHHCCC---------CSSBCCCSSTTCEEEEEECSCTT-SEECHHHHHHHHHHHHHCCCTTSCCCSEEEE
T ss_pred CCCchHHHHHHHhccC---------CCCCcEeeCCCCEEEEEEeECCC-CCcCHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 8999999999999884 12457899999999999999887 67888999999999999 89999999
Q ss_pred cH--------HHHHHHHHHhcCcEEEEecCCCCCCC-----CccCCCCCceEEecccccCCcccceEEeCCCeEEEEeec
Q 042484 220 SL--------VAIGSFHAVQHGIVVVCSDGNEGLVD-----VTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISE 286 (620)
Q Consensus 220 Sl--------~~~~~~~a~~~Gv~vV~AAGN~G~~~-----~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~ 286 (620)
|| +..++..+.++|++||+||||+|... ...+...+++|+|||++.+
T Consensus 153 S~G~~~~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~-------------------- 212 (327)
T 2x8j_A 153 SLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD-------------------- 212 (327)
T ss_dssp CEEBSCCCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT--------------------
T ss_pred CCCcCCCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC--------------------
Confidence 99 66677788899999999999999642 2233345899999995422
Q ss_pred cCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcce
Q 042484 287 RAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYY 366 (620)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 366 (620)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhh
Q 042484 367 NLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLP 437 (620)
Q Consensus 367 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl 437 (620)
+.++.||++|| +|||+| +++.|..++|||||||||||++|||
T Consensus 213 --------------------------~~~~~fS~~G~---~~di~APG~~i~s~~~~~~~~~~sGTS~AaP~VaG~aAll 263 (327)
T 2x8j_A 213 --------------------------LRLSDFTNTNE---EIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALI 263 (327)
T ss_dssp --------------------------CCBSCC---CC---CCSEEEECSSEEEECSTTCEEEEESGGGTHHHHHHHHHHH
T ss_pred --------------------------CCCCCccCCCC---CceEecCcCceEeecCCCCEEeecCHHHHHHHHHHHHHHH
Confidence 23456888887 677777 4668999999999999999999999
Q ss_pred ccc-----CCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 438 KIL-----HPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 438 ~~~-----~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
+|+ +|.+++.|||++|++||+++. .++..+|+|+||+.+|++
T Consensus 264 ~~~~~~~~~p~ls~~~v~~~L~~tA~~~g-------------~~~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 264 INLAEDAFKRSLSETEIYAQLVRRATPIG-------------FTAQAEGNGFLTLDLVER 310 (327)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHTTEECCS-------------SCHHHHTTCEECTTHHHH
T ss_pred HHhhhhhcCCCCCHHHHHHHHHHhCccCC-------------CCCCceeeeEECHHHHHH
Confidence 999 999999999999999999763 245789999999999988
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=398.49 Aligned_cols=245 Identities=20% Similarity=0.191 Sum_probs=191.0
Q ss_pred CCC-CCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhh
Q 042484 74 RYG-EDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSH 152 (620)
Q Consensus 74 ~~G-~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTH 152 (620)
.+| +||+|||||||||++||+|.+.. +.+ .+ ++. +.......|.+|||||
T Consensus 4 l~G~~gV~VaViDtGid~~Hpdl~g~~-------~~~-----~~-------~~~----------~~~~~~d~~~~gHGT~ 54 (282)
T 3zxy_A 4 LKGDHNIRVAILDGPVDIAHPCFQGAD-------LTV-----LP-------TLA----------PTAARSDGFMSAHGTH 54 (282)
T ss_dssp CCCCTTSEEEEEESCCCTTSGGGTTCE-------EEE-----CC-------CSS----------CCCCCTTCHHHHHHHH
T ss_pred CcCCCCCEEEEEcCCCCCCChhHCCCe-------eec-----Cc-------CCC----------CCCCCCCCCCCCcccc
Confidence 578 79999999999999999997531 110 00 000 0011223346799999
Q ss_pred hhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-----------
Q 042484 153 TLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----------- 221 (620)
Q Consensus 153 VAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl----------- 221 (620)
|||||+|+. +..+.||||+|+|+.+|++.+..+......++++|+||++.+++||||||
T Consensus 55 VAGiiag~~----------~~~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~ 124 (282)
T 3zxy_A 55 VASIIFGQP----------ETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADG 124 (282)
T ss_dssp HHHHHHCCT----------TSSSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCH
T ss_pred eeehhhccC----------CceeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccccccH
Confidence 999999875 23478999999999999986653457788999999999999999999999
Q ss_pred -HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeEE
Q 042484 222 -VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTFI 300 (620)
Q Consensus 222 -~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 300 (620)
+..+...+.++|+++|+||||+|......+...+++|+|||++.+
T Consensus 125 ~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------------- 170 (282)
T 3zxy_A 125 WLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH---------------------------------- 170 (282)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT----------------------------------
T ss_pred HHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC----------------------------------
Confidence 566677888999999999999997766666667999999995422
Q ss_pred EccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEE
Q 042484 301 RTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYI 380 (620)
Q Consensus 301 ~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i 380 (620)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccC----CCCCHH
Q 042484 381 KRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILH----PDWSPA 447 (620)
Q Consensus 381 ~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~----P~~sp~ 447 (620)
+.++.||+||+...||||+| +++.|..++|||||||||||++|||++++ |.++|+
T Consensus 171 ------------~~~~~~S~~~~~~~~~di~ApG~~i~s~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~ 238 (282)
T 3zxy_A 171 ------------GHPLDFSNWGSTYEQQGILAPGEDILGAKPGGGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQ 238 (282)
T ss_dssp ------------SCBCSSSCCCHHHHHHEEEEECSSEEEECTTSCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred ------------CccccccCCCCCccccceeccCcceeeecCCCceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHH
Confidence 12345677777666777776 56789999999999999999999999874 789999
Q ss_pred HHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 448 AVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 448 ~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
|||++|++||++++.. .+.....+|+|+||+.+|++
T Consensus 239 ~vk~~L~~tA~~~~~~---------~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 239 KVRQLLLQSALPCDDD---------APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHHHCBCC----------------CGGGTTCBCCHHHHHH
T ss_pred HHHHHHHhhCeeCCCC---------CCCccCceeeeEeCHHHHHH
Confidence 9999999999876532 23445689999999999987
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=388.79 Aligned_cols=242 Identities=24% Similarity=0.318 Sum_probs=197.1
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
+..+|+.. +|+||+|||||||||++||+|.+. .+.+ . ++ ......+.|
T Consensus 20 ~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~-------~~~~-----~------------~~-------~~~~~~~~d 67 (279)
T 1thm_A 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK-------VVGG-----W------------DF-------VDNDSTPQN 67 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT-------EEEE-----E------------ET-------TTTBSCCCC
T ss_pred hHHHHhcC-CCCCCEEEEEccCCCCCCcchhcC-------cccc-----c------------cc-------cCCCCCCCC
Confidence 46899887 799999999999999999999853 0011 0 11 011234578
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---- 221 (620)
..||||||||||+|...+ ...+.||||+|+|+.+|++... |.++.+++++||++|+++|++||||||
T Consensus 68 ~~gHGT~vAgiia~~~~n--------~~g~~GvAp~a~l~~~~v~~~~-g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~ 138 (279)
T 1thm_A 68 GNGHGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDNS-GSGTWTAVANGITYAADQGAKVISLSLGGTV 138 (279)
T ss_dssp SSSHHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTT-SCCCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred CCCcHHHHHHHHhCccCC--------CCccEEeCCCCEEEEEEeeCCC-CCccHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 899999999999987633 2347899999999999999887 678889999999999999999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCcee
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLF 297 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 297 (620)
+..+..++.++|+++|+||||+|......+...+++|+||+++.+
T Consensus 139 ~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------- 187 (279)
T 1thm_A 139 GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------------------------------- 187 (279)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-------------------------------
T ss_pred CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC-------------------------------
Confidence 667777888999999999999997665666667899999985422
Q ss_pred eEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcE
Q 042484 298 TFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPV 377 (620)
Q Consensus 298 ~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 377 (620)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHH
Q 042484 378 GYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAA 448 (620)
Q Consensus 378 ~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ 448 (620)
+.++.||++|| +|||+| +.+.|..++|||||||||||++||| ++|.++++|
T Consensus 188 ---------------~~~~~fS~~G~---~~dv~APG~~i~s~~~~~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~ 247 (279)
T 1thm_A 188 ---------------DNKSSFSTYGS---WVDVAAPGSSIYSTYPTSTYASLSGTSMATPHVAGVAGLL--ASQGRSASN 247 (279)
T ss_dssp ---------------SCBCTTCCCCT---TCCEEEECSSEEEEETTTEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHH
T ss_pred ---------------CCcCCcCCCCC---ceEEEEcCCCeEEEeCCCCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHH
Confidence 22456788886 466666 4567999999999999999999999 589999999
Q ss_pred HHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 449 VQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 449 ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
||++|++||+++... ...||+|+||+.+|++
T Consensus 248 v~~~L~~ta~~~~~~-------------~~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 248 IRAAIENTADKISGT-------------GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp HHHHHHHTCBCCTTB-------------TTTBSSEECCHHHHHH
T ss_pred HHHHHHHhCccCCCC-------------CccccCCeeCHHHHhc
Confidence 999999999987432 1468999999999975
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-48 Score=402.02 Aligned_cols=252 Identities=20% Similarity=0.236 Sum_probs=198.4
Q ss_pred ccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCC
Q 042484 67 NSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDK 146 (620)
Q Consensus 67 ~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~ 146 (620)
+++|+.+..++||+|||||||||++||+|.+..+ .+. . .+.. .+.....|.
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~~-------~~~----~--------~~~~----------~~~~~~~d~ 61 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGADL-------TRL----P--------SLVS----------GEANANGSM 61 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTCEE-------EEC----C----------------------------CCC
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCCcc-------cCC----C--------cccC----------CCCCCCCCC
Confidence 4899998877999999999999999999985311 100 0 0000 012223467
Q ss_pred CCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-----
Q 042484 147 NGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----- 221 (620)
Q Consensus 147 ~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl----- 221 (620)
.||||||||||+|+. ++.+.||||+|+|+.+|++.+..+.+....+++||+||++++++|||+||
T Consensus 62 ~gHGThVAGiiag~~----------~~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~~ 131 (306)
T 4h6w_A 62 STHGTHVASIIFGQH----------DSPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTD 131 (306)
T ss_dssp CHHHHHHHHHHHCCT----------TSSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEES
T ss_pred CCchHHHHHHHHccc----------cCCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeecccccccc
Confidence 899999999999874 23478999999999999987653567888999999999999999999999
Q ss_pred -------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCC
Q 042484 222 -------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSD 294 (620)
Q Consensus 222 -------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 294 (620)
+..+...+.++|+++|+++||+|......+...+++|+|+|++.+.
T Consensus 132 ~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~~--------------------------- 184 (306)
T 4h6w_A 132 AGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQG--------------------------- 184 (306)
T ss_dssp SSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTTS---------------------------
T ss_pred CCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCCC---------------------------
Confidence 5667778889999999999999976655666678999999854222
Q ss_pred ceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCC
Q 042484 295 KLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTR 374 (620)
Q Consensus 295 ~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 374 (620)
T Consensus 185 -------------------------------------------------------------------------------- 184 (306)
T 4h6w_A 185 -------------------------------------------------------------------------------- 184 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcc----cC
Q 042484 375 HPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKI----LH 441 (620)
Q Consensus 375 ~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~----~~ 441 (620)
.++.||++|+...+|||+| +++.|..++|||||||||||++|||++ ++
T Consensus 185 -------------------~~~~~s~~g~~~~~~di~APG~~i~s~~~~~~~~~~sGTS~AaP~VaG~~All~s~~~~~~ 245 (306)
T 4h6w_A 185 -------------------KPVDFSNWGDAYQKQGILAPGKDILGAKPNGGTIRLSGTSFATPIVSGVAALLLSLQIKRG 245 (306)
T ss_dssp -------------------CBCSSSCBCHHHHHHEEEEECSSEEEECTTSCEEEECSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------CccccccccCCcCcceeecCCcCcccccCCCceeccCCCcchhHHHHHHHHHHHHHHHhhC
Confidence 2335666666666666666 567899999999999999999999985 46
Q ss_pred CCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 442 PDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 442 P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
|.|+|+|||++|++||+++...+ ......||+|+||+.+|++
T Consensus 246 p~~t~~~v~~~L~~tA~~~~~~~---------~~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 246 EKPDPQKVKNALLASATPCNPKD---------TDDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp CCCCHHHHHHHHHHTCBCCCTTT---------CSCGGGGTTCBCCHHHHHH
T ss_pred CCCCHHHHHHHHHhhCccCCCCC---------CCCCCCcceeecCHHHHHH
Confidence 99999999999999999875432 2234579999999999997
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-47 Score=392.86 Aligned_cols=263 Identities=29% Similarity=0.344 Sum_probs=203.5
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
+..+|+.+++|+||+|||||||||++||+|.+. +..+. +| . ...+.......|
T Consensus 15 ~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~------------~~~~~------------~~-~--~~~~~~~~~~~d 67 (310)
T 2ixt_A 15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN------------VEQCK------------DF-T--GATTPINNSCTD 67 (310)
T ss_dssp TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT------------EEEEE------------ES-S--SSSSCEETCCCC
T ss_pred chhhhhccCCCCCcEEEEEecCCCCCCHHHhhc------------ccccc------------cc-c--CCCCCCCCCCCC
Confidence 358999999999999999999999999999753 11000 01 0 000011223568
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCC-----cEEeec
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGV-----DMLSVS 220 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gv-----dVIn~S 220 (620)
..||||||||||+|.... +...+.||||+|+|+.+|++.+. |.+..++++++|++|+++++ +|||||
T Consensus 68 ~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~-g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S 139 (310)
T 2ixt_A 68 RNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDS-GSGYSDDIAAAIRHAADQATATGTKTIISMS 139 (310)
T ss_dssp SSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTT-SCCCHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCC-CCCcHHHHHHHHHHHHHhhhccCCCeEEEEc
Confidence 899999999999988522 23457899999999999999887 67789999999999999988 999999
Q ss_pred H--------HHHHHHHHHhcCcEEEEecCCCCCCCCccCC--CCCceEEecccccCCcccceEEeCCCeEEEEeeccCCC
Q 042484 221 L--------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQN--AAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKG 290 (620)
Q Consensus 221 l--------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~--~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 290 (620)
| +..+..++.++|++||+||||+|....+... ..+++|+|||++.... +
T Consensus 140 ~G~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~--------~------------- 198 (310)
T 2ixt_A 140 LGSSANNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ--------N------------- 198 (310)
T ss_dssp CCBSSCCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE--------T-------------
T ss_pred CCCCCCCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc--------C-------------
Confidence 9 6667778889999999999999976444433 4589999999541100 0
Q ss_pred CCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeec
Q 042484 291 LPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFF 370 (620)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 370 (620)
T Consensus 199 -------------------------------------------------------------------------------- 198 (310)
T 2ixt_A 199 -------------------------------------------------------------------------------- 198 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---------CCCCceee---------cCCCcEEeccccchhhhhhh
Q 042484 371 TFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---------HITPEILK---------RRIPFNSISGTSMSGPYISG 432 (620)
Q Consensus 371 ~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---------~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG 432 (620)
....++.||++||. +.||||+| ..+.|..++|||||||||||
T Consensus 199 --------------------g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s~~~~~~~~~~sGTS~AaP~vaG 258 (310)
T 2ixt_A 199 --------------------GTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGGYNTISGTSMATPHVSG 258 (310)
T ss_dssp --------------------TEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEEECTTSSEEEECSHHHHHHHHHH
T ss_pred --------------------CCeeeccccCCCCccCCccccccCCCeeEECCCCCEeeecCCCCEEeeccHHHHHHHHHH
Confidence 00135678999984 24899998 46789999999999999999
Q ss_pred hhhhhcccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCcc
Q 042484 433 IAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPN 488 (620)
Q Consensus 433 ~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~ 488 (620)
++|||+|++|+|+++|||++|++||++++..+. ....+.....+|+|++|+.
T Consensus 259 ~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~----~~a~~g~d~~~G~G~~~vq 310 (310)
T 2ixt_A 259 LAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG----YGAAIGDDYASGFGFARVQ 310 (310)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS----TTCCSSSBTTTBTCBCCC-
T ss_pred HHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC----cccccCCccccccceeecC
Confidence 999999999999999999999999998764321 1123456788999999863
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=396.22 Aligned_cols=253 Identities=25% Similarity=0.350 Sum_probs=198.0
Q ss_pred CccccccCCCCC--CcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGE--DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSA 143 (620)
Q Consensus 66 ~~~~~~~~~~G~--GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 143 (620)
+..+|+.+ +|+ ||+|||||||||++||+|.+. .+.+.. |..+ .......+.
T Consensus 17 ~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~-------~~~~~~-------------~~~~------~~~~~~~~~ 69 (320)
T 2z30_A 17 APSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN-------IAWCVS-------------TLRG------KVSTKLRDC 69 (320)
T ss_dssp CGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG-------EEEEEE-------------CGGG------CCBCCHHHH
T ss_pred hHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc-------cccCcc-------------ccCC------ccCCCCCCC
Confidence 46899988 999 999999999999999999752 111100 0000 000011123
Q ss_pred CCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC-----------
Q 042484 144 RDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD----------- 212 (620)
Q Consensus 144 ~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~----------- 212 (620)
.|..||||||||||+|.. +...+.||||+|+|+.+|++... |.+..++++++|+||++.
T Consensus 70 ~d~~gHGT~vAgiia~~~---------n~~g~~GvAp~a~l~~~~v~~~~-g~~~~~~i~~ai~~a~~~~~~~~~~~~~~ 139 (320)
T 2z30_A 70 ADQNGHGTHVIGTIAALN---------NDIGVVGVAPGVQIYSVRVLDAR-GSGSYSDIAIGIEQAILGPDGVADKDGDG 139 (320)
T ss_dssp BCSSSHHHHHHHHHHCCS---------SSBSCCCSSTTCEEEEEECSCTT-SEEEHHHHHHHHHHHHHTTTTCSCTTSSS
T ss_pred CCCCCCHHHHHHHHHccc---------CCCceEeeCCCCEEEEEEeeCCC-CCccHHHHHHHHHHHHhCccccccccccc
Confidence 578899999999999873 22457899999999999999877 778889999999999987
Q ss_pred ---------CCcEEeecH--------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEe
Q 042484 213 ---------GVDMLSVSL--------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVL 275 (620)
Q Consensus 213 ---------gvdVIn~Sl--------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~ 275 (620)
+++|||||| +..++.++.++|++||+||||+|......+...|++|+|||++.+
T Consensus 140 ~~~~~~~~~~~~Vin~S~G~~~~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------- 210 (320)
T 2z30_A 140 IIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN--------- 210 (320)
T ss_dssp CCTTCTTSCCCSEEEECEEBSCCCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT---------
T ss_pred ccccccccCCceEEEecCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCCC---------
Confidence 999999999 566777788999999999999997655666667999999995422
Q ss_pred CCCeEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCcccc
Q 042484 276 GNNKRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLP 355 (620)
Q Consensus 276 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p 355 (620)
T Consensus 211 -------------------------------------------------------------------------------- 210 (320)
T 2z30_A 211 -------------------------------------------------------------------------------- 210 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCC--ceee--cCCCcEEeccccchhhhhh
Q 042484 356 ASVITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITP--EILK--RRIPFNSISGTSMSGPYIS 431 (620)
Q Consensus 356 ~~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kP--di~a--~~~~y~~~sGTSMAaP~VA 431 (620)
+.++.||++||....| +|.. +.+.|..++||||||||||
T Consensus 211 -------------------------------------~~~~~~S~~g~~v~APG~~i~s~~~~~~~~~~sGTS~AaP~va 253 (320)
T 2z30_A 211 -------------------------------------DNIASFSNRQPEVSAPGVDILSTYPDDSYETLMGTAMATPHVS 253 (320)
T ss_dssp -------------------------------------SCBCTTSCSSCSEEEECSSEEEEETTTEEEEECSHHHHHHHHH
T ss_pred -------------------------------------CCcCcccCCCCCEEeCCCCeEEeccCCCeEeccCHHHHHHHHH
Confidence 1234567777643222 1222 5678999999999999999
Q ss_pred hhhhhhcccC-------------CCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 432 GIAGLPKILH-------------PDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 432 G~aALl~~~~-------------P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
|++|||+|++ |++++.|||++|++||+++.. +.....||+|+||+.+|++
T Consensus 254 G~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~-----------~g~~~~~G~G~vd~~~A~~ 316 (320)
T 2z30_A 254 GVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGP-----------TGWDADYGYGVVRAALAVQ 316 (320)
T ss_dssp HHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSS-----------SSSBTTTBTCBCCHHHHHH
T ss_pred HHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCccCCC-----------CCCCCCcCCceeCHHHHHH
Confidence 9999999999 999999999999999998743 2235679999999999987
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=394.43 Aligned_cols=267 Identities=22% Similarity=0.304 Sum_probs=200.1
Q ss_pred CCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCC----------C-CCcccCccccccccccC
Q 042484 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDK----------D-ARFHCNRYFNQDYAVHK 133 (620)
Q Consensus 65 ~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~----------~-~~~~~n~~~~~~~~~~~ 133 (620)
.+..+|+.+++|+||+||||||||| +||+|.+.- +.+...... + ..+..+.|+.... .
T Consensus 20 ~~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~-------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~ 88 (340)
T 3lpc_A 20 KADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANV-------LPGYDFISNSQISLDGDGRDADPFDEGDWFDNWA---C 88 (340)
T ss_dssp CHHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGB-------CCCEECCCCHHHHCSSSSSBSCCBCCCCCBCTTT---T
T ss_pred CHHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccc-------ccCccccCCccccccCCCccCCcccccccccccc---c
Confidence 3569999999999999999999998 999997531 111111100 0 0000000111000 0
Q ss_pred CCCCCCCCCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh--
Q 042484 134 GPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH-- 211 (620)
Q Consensus 134 ~~~~~~~~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~-- 211 (620)
...+.+.....|..||||||||||+|...+ ...+.||||+|+|+.+|++... + +..++++++|+||++
T Consensus 89 ~~~~~~~~~~~d~~gHGT~vAgiia~~~~~--------~~g~~GvAp~a~l~~~~v~~~~-~-~~~~~~~~ai~~a~~~~ 158 (340)
T 3lpc_A 89 GGRPDPRKERSDSSWHGSHVAGTIAAVTNN--------RIGVAGVAYGAKVVPVRALGRC-G-GYDSDISDGLYWAAGGR 158 (340)
T ss_dssp SCTTCGGGSCBCCCCHHHHHHHHHHCCCSS--------SSSCCCTTTTSEEEEEECCBTT-B-CCHHHHHHHHHHHHTCC
T ss_pred cCCCCcccCCCCCCCCHHHHHHHHHccCCC--------CCcceeecCCCEEEEEEEecCC-C-CcHHHHHHHHHHHhccc
Confidence 011222344678999999999999998643 2347899999999999999887 5 789999999999998
Q ss_pred --------CCCcEEeecH---------HHHHHHHHHhcCcEEEEecCCCCCCCC-ccCCCCCceEEecccccCCcccceE
Q 042484 212 --------DGVDMLSVSL---------VAIGSFHAVQHGIVVVCSDGNEGLVDV-TLQNAAPRQIVVGASTMDRDLSNYV 273 (620)
Q Consensus 212 --------~gvdVIn~Sl---------~~~~~~~a~~~Gv~vV~AAGN~G~~~~-t~~~~ap~vitVga~~~~~~~~~~~ 273 (620)
.+++|||||| +..+..++.++|++||+||||+|.... ..+...+++|+|||++.+.
T Consensus 159 ~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~~------ 232 (340)
T 3lpc_A 159 IAGIPENRNPAKVINMSLGSDGQCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSRG------ 232 (340)
T ss_dssp CTTSCCCSSCCSEEEECCCEESCCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECTTS------
T ss_pred ccccccccCCCeEEEeCcCCCCCcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCCCC------
Confidence 8999999999 556677788999999999999996543 2344578999999964222
Q ss_pred EeCCCeEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCcc
Q 042484 274 VLGNNKRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHV 353 (620)
Q Consensus 274 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~ 353 (620)
T Consensus 233 -------------------------------------------------------------------------------- 232 (340)
T 3lpc_A 233 -------------------------------------------------------------------------------- 232 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEeecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceeec----------------CCCc
Q 042484 354 LPASVITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILKR----------------RIPF 417 (620)
Q Consensus 354 ~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a~----------------~~~y 417 (620)
.++.||++|| ||||+|+ .+.|
T Consensus 233 ----------------------------------------~~~~~S~~g~---~~di~ApG~~i~s~~~~~~~~~~~~~~ 269 (340)
T 3lpc_A 233 ----------------------------------------IRASFSNYGV---DVDLAAPGQDILSTVDSGTRRPVSDAY 269 (340)
T ss_dssp ----------------------------------------SBCTTCCBST---TCCEEEECSSEEEEEESCSSSCCSEEE
T ss_pred ----------------------------------------CcCCCCCCCC---CceEEecCCCeecccCCCCcCCCCCcc
Confidence 2345777776 5666661 2348
Q ss_pred EEeccccchhhhhhhhhhhhccc-C---CCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCCC
Q 042484 418 NSISGTSMSGPYISGIAGLPKIL-H---PDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDP 493 (620)
Q Consensus 418 ~~~sGTSMAaP~VAG~aALl~~~-~---P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~~ 493 (620)
..++|||||||||||++|||+|+ + |.+++++||++|++||+++.. .....||+|+||+.+|++.
T Consensus 270 ~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~------------~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 270 SFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG------------RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS------------CCSSCCCSSBCCHHHHHHH
T ss_pred eecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC------------CCCCCcccceecHHHHHHH
Confidence 99999999999999999999988 5 999999999999999998641 2356899999999999874
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-46 Score=394.07 Aligned_cols=251 Identities=14% Similarity=0.079 Sum_probs=196.5
Q ss_pred CccccccCCCCC--CcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGE--DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSA 143 (620)
Q Consensus 66 ~~~~~~~~~~G~--GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 143 (620)
...+|+. .+|+ ||+||||||||| +||+|.+. .+.+... ..++ .+.....+
T Consensus 32 ~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~-------~~~~~~~------------~~~~-------~~~~~~~~ 83 (347)
T 2iy9_A 32 LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS-------EFAKFSF------------TQDG-------SPFPVKKS 83 (347)
T ss_dssp CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC-------EEEEEEC------------BTTC-------CSSCCSSS
T ss_pred hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC-------cccCCcc------------cCCC-------CCCCCCCC
Confidence 3589988 8999 999999999999 99999753 1111110 0000 01112245
Q ss_pred CCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC------CCcEE
Q 042484 144 RDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD------GVDML 217 (620)
Q Consensus 144 ~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~------gvdVI 217 (620)
.|..||||||||||+|+. .+.||||+|+|+.+|++.+. + .. ++++||+||+++ |++||
T Consensus 84 ~d~~gHGT~vAgiia~~~------------g~~GvAp~a~l~~~~v~~~~-~-~~--~~~~ai~~a~~~~~~~~~~~~Vi 147 (347)
T 2iy9_A 84 EALYIHGTAMASLIASRY------------GIYGVYPHALISSRRVIPDG-V-QD--SWIRAIESIMSNVFLAPGEEKII 147 (347)
T ss_dssp HHHHHHHHHHHHHHHCSS------------SSCCSSTTCEEEEEECCSSB-C-TT--HHHHHHHHHHTCTTSCTTEEEEE
T ss_pred CCCCCcHHHHHHHHhccc------------CCcccCCCCEEEEEEEecCC-C-HH--HHHHHHHHHHhhhhcccCCceEE
Confidence 678899999999999871 25899999999999999765 3 22 999999999999 99999
Q ss_pred eecH-----------HHHHHHHHHhcCcEEEEecCCCCCCC-------CccCCCCC----------ceEEeccccc--CC
Q 042484 218 SVSL-----------VAIGSFHAVQHGIVVVCSDGNEGLVD-------VTLQNAAP----------RQIVVGASTM--DR 267 (620)
Q Consensus 218 n~Sl-----------~~~~~~~a~~~Gv~vV~AAGN~G~~~-------~t~~~~ap----------~vitVga~~~--~~ 267 (620)
|||| +..+...+.++|+++|+||||+|... ...+...+ ++|+|||++. +.
T Consensus 148 n~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~~g 227 (347)
T 2iy9_A 148 NISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKG 227 (347)
T ss_dssp EESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCCTT
T ss_pred EeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCCCC
Confidence 9999 56667788899999999999999643 23333457 8999998653 11
Q ss_pred cccceEEeCCCeEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcc
Q 042484 268 DLSNYVVLGNNKRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDH 347 (620)
Q Consensus 268 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~ 347 (620)
...
T Consensus 228 ~~~----------------------------------------------------------------------------- 230 (347)
T 2iy9_A 228 ETP----------------------------------------------------------------------------- 230 (347)
T ss_dssp SCC-----------------------------------------------------------------------------
T ss_pred cee-----------------------------------------------------------------------------
Confidence 100
Q ss_pred cCCCccccEEEeecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcE
Q 042484 348 TTDRHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFN 418 (620)
Q Consensus 348 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~ 418 (620)
......+.||++||+ ||||+| +++.|.
T Consensus 231 ------------------------------------------~~~~~~~~fS~~G~~--~~di~APG~~i~s~~~~~~~~ 266 (347)
T 2iy9_A 231 ------------------------------------------VLHGGGITGSRFGNN--WVDIAAPGQNITFLRPDAKTG 266 (347)
T ss_dssp ------------------------------------------CBCCCSSSCBCBCTT--TCSEEEECSSEEEECTTSCEE
T ss_pred ------------------------------------------cccCCCCCCCCCCCC--CCEEEeCCCCeEeecCCCCeE
Confidence 001235689999998 899998 567899
Q ss_pred EeccccchhhhhhhhhhhhcccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCCC
Q 042484 419 SISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDP 493 (620)
Q Consensus 419 ~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~~ 493 (620)
.++|||||||||||++|||+|++|+|++.|||++|++||+++... ....+|+|+||+.+|++.
T Consensus 267 ~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~------------~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 267 TGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSL------------VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGG------------TTTSGGGEECCHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCC------------CCccccCCEecHHHHHHH
Confidence 999999999999999999999999999999999999999987432 135899999999999983
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=397.96 Aligned_cols=258 Identities=23% Similarity=0.277 Sum_probs=201.9
Q ss_pred ccccc-cCCCCCCcEEEEeccccCC------CCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCC
Q 042484 67 NSIWE-KARYGEDIIIGNLDTGVWR------ESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSS 139 (620)
Q Consensus 67 ~~~~~-~~~~G~GV~VgVIDTGId~------~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 139 (620)
+.+|+ .+++|+||+|||||||||+ .||+|.+. ..... ++ . +
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~------------i~~~~------------~~-~-------~ 58 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK------------ITALY------------AL-G-------R 58 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC------------EEEEE------------ET-T-------T
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC------------Eeeec------------cc-c-------C
Confidence 48997 7999999999999999999 79999752 10000 11 0 1
Q ss_pred CCCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCC--CHHHHHHHHHHHHhCCCcEE
Q 042484 140 FYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGC--YDCDIIAAFDMAIHDGVDML 217 (620)
Q Consensus 140 ~~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~--~~~~i~~ai~~a~~~gvdVI 217 (620)
...+.|+.||||||||||+|+. ..+.||||+|+|+++|++... |.. ..+++.++|++|++.|++||
T Consensus 59 ~~~~~d~~gHGT~VAgiiag~g-----------~~~~GvAp~a~l~~~~v~~~~-g~~~~~~~~~~~ai~~a~~~g~~Vi 126 (434)
T 1wmd_A 59 TNNANDTNGHGTHVAGSVLGNG-----------STNKGMAPQANLVFQSIMDSG-GGLGGLPSNLQTLFSQAYSAGARIH 126 (434)
T ss_dssp TTCCCCSSSHHHHHHHHHHCCS-----------SSSCCSSTTSEEEEEECCCTT-SSCTTSCSSHHHHHHHHHHTTCSEE
T ss_pred CCCCCCCCCcHHHHHHHHHcCC-----------CCceeeCCCCEEEEEEeecCC-CccccccHHHHHHHHHHHhcCCeEE
Confidence 1246788999999999999864 236799999999999999776 432 45689999999999999999
Q ss_pred eecH----------HHHHHHHH-HhcCcEEEEecCCCCCCCCccCCC--CCceEEecccccCCcccceEEeCCCeEEEEe
Q 042484 218 SVSL----------VAIGSFHA-VQHGIVVVCSDGNEGLVDVTLQNA--APRQIVVGASTMDRDLSNYVVLGNNKRFKLI 284 (620)
Q Consensus 218 n~Sl----------~~~~~~~a-~~~Gv~vV~AAGN~G~~~~t~~~~--ap~vitVga~~~~~~~~~~~~~g~~~~~~g~ 284 (620)
|||| ...+...+ .++|+++|+||||+|+...++..| ++++|+|||++..+....
T Consensus 127 n~S~G~~~~~~~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~~------------- 193 (434)
T 1wmd_A 127 TNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFG------------- 193 (434)
T ss_dssp EECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGC-------------
T ss_pred EecCCCCcCCcCCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCcccC-------------
Confidence 9999 23344444 589999999999999765555444 689999999754332000
Q ss_pred eccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCc
Q 042484 285 SERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDG 364 (620)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g 364 (620)
T Consensus 194 -------------------------------------------------------------------------------- 193 (434)
T 1wmd_A 194 -------------------------------------------------------------------------------- 193 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceeec---------------------CCCcEEe
Q 042484 365 YYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKR---------------------RIPFNSI 420 (620)
Q Consensus 365 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~---------------------~~~y~~~ 420 (620)
......+.++.||++||+ ++||||+|+ .+.|..+
T Consensus 194 ----------------------~~~~~~~~~a~fS~~G~~~~g~~kpdi~ApG~~i~s~~~~~~~~~~~~~~~~~~~~~~ 251 (434)
T 1wmd_A 194 ----------------------SYADNINHVAQFSSRGPTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYM 251 (434)
T ss_dssp ----------------------GGGSCTTSBCTTSCCCCCTTSCCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEE
T ss_pred ----------------------cccCCCCccccccCCCCCCCCCCCceEEcCCCCeEecCCCCCCCcccccCCCCceEee
Confidence 000113567899999997 689999991 4679999
Q ss_pred ccccchhhhhhhhhhhhcccCCCC-----CHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCCCc
Q 042484 421 SGTSMSGPYISGIAGLPKILHPDW-----SPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDPG 494 (620)
Q Consensus 421 sGTSMAaP~VAG~aALl~~~~P~~-----sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~~~ 494 (620)
+|||||||||||++|||+|++|++ ++++||++|++||+++.. ..+...||+|+||+.+|++..
T Consensus 252 sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~-----------~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 252 GGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-----------GYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-----------CSSCTTTTTCBCCHHHHHTCE
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC-----------CCCCccCCcCeEeHHHhcccc
Confidence 999999999999999999999875 999999999999987521 345678999999999999754
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=396.87 Aligned_cols=269 Identities=17% Similarity=0.220 Sum_probs=190.6
Q ss_pred CCCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCC
Q 042484 64 IPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSA 143 (620)
Q Consensus 64 ~~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 143 (620)
+++..+|+.+++|+||+|||||||||++||+|.+.- .... ..++ ......+.+...+
T Consensus 25 i~~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~------------~~~~----------~~d~-~~~~~~p~~~~~~ 81 (471)
T 1p8j_A 25 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY------------DPGA----------SFDV-NDQDPDPQPRYTQ 81 (471)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB------------CGGG----------CEET-TTTBSCCCCCCCT
T ss_pred CChHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhcc------------CccC----------cccc-cCCCCCCCCccCC
Confidence 456799999999999999999999999999998530 0000 0011 0000011112245
Q ss_pred CCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh-CCCcEEeecH-
Q 042484 144 RDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH-DGVDMLSVSL- 221 (620)
Q Consensus 144 ~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~-~gvdVIn~Sl- 221 (620)
.|..||||||||||||...+ ...+.||||+|+|+.+|++. +..+++++|++++++ ++++||||||
T Consensus 82 ~d~~gHGT~vAGiiaa~~~n--------~~g~~GvAp~a~i~~~rv~~-----g~~~~~~~ai~~a~~~~~~~Vin~S~G 148 (471)
T 1p8j_A 82 MNDNRHGTRCAGEVAAVANN--------GVCGVGVAYNARIGGVRMLD-----GEVTDAVEARSLGLNPNHIHIYSASWG 148 (471)
T ss_dssp TCTTCHHHHHHHHHHCCSSS--------SSSCCCTTTTSEEEEEECSS-----SCCCHHHHHHHHTSCTTTCCEEEECCB
T ss_pred CCCCCcHHHHHHHHHeeccC--------CCCCEEECCCCeEEEEEccC-----CchhHHHHHHHhhhccCCCeEEEeccC
Confidence 68899999999999987533 23478999999999999985 235679999999999 9999999999
Q ss_pred --------------HHHHHHHHHh-----cCcEEEEecCCCCCCCCc----cCCCCCceEEecccccCCcccceEEeCCC
Q 042484 222 --------------VAIGSFHAVQ-----HGIVVVCSDGNEGLVDVT----LQNAAPRQIVVGASTMDRDLSNYVVLGNN 278 (620)
Q Consensus 222 --------------~~~~~~~a~~-----~Gv~vV~AAGN~G~~~~t----~~~~ap~vitVga~~~~~~~~~~~~~g~~ 278 (620)
...+..++.+ +|+++|+||||+|..... ....++++|+|||++.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~g~---------- 218 (471)
T 1p8j_A 149 PEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGN---------- 218 (471)
T ss_dssp SCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTTSC----------
T ss_pred cCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCCCC----------
Confidence 2334444443 699999999999964321 1223589999999764332
Q ss_pred eEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEE
Q 042484 279 KRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASV 358 (620)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~ 358 (620)
T Consensus 219 -------------------------------------------------------------------------------- 218 (471)
T 1p8j_A 219 -------------------------------------------------------------------------------- 218 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCC----------CCceee---cCCCcEEeccccc
Q 042484 359 ITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHI----------TPEILK---RRIPFNSISGTSM 425 (620)
Q Consensus 359 i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~----------kPdi~a---~~~~y~~~sGTSM 425 (620)
++.||++||... .++|+. .++.|..++||||
T Consensus 219 ------------------------------------~a~~S~~g~~~~~~~~~~~~~~g~~i~st~~~~~~~~~~sGTS~ 262 (471)
T 1p8j_A 219 ------------------------------------VPWYSEACSSTLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSA 262 (471)
T ss_dssp ------------------------------------CCTTCCBCTTCCEEEECCCSTTSCCEEEEETTTEEEEEECSHHH
T ss_pred ------------------------------------cccccCCCCcceEEeCCCCCCCCCCEEEeeCCCCccccCCCccc
Confidence 122333333210 122333 2356899999999
Q ss_pred hhhhhhhhhhhhcccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCCCc
Q 042484 426 SGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDPG 494 (620)
Q Consensus 426 AaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~~~ 494 (620)
|||||||++|||+|++|+|++++||++|++||++++..................||+|+||+.+|++..
T Consensus 263 AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~~g~~~~~~~G~G~vda~~Av~~a 331 (471)
T 1p8j_A 263 SAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVALA 331 (471)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHHHH
T ss_pred ccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecCCCcccCCCCCCEEEcHhHHHHHh
Confidence 999999999999999999999999999999999876432221111111224568999999999999843
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=363.63 Aligned_cols=221 Identities=22% Similarity=0.333 Sum_probs=181.1
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
...+|..+++|+||+|||||||||++||+|.+. ...+. ++ . ....++.|
T Consensus 18 ~~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~------------~~~~~------------~~-~------~~~~~~~d 66 (284)
T 1sh7_A 18 LDRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR------------SVSGY------------DF-V------DNDADSSD 66 (284)
T ss_dssp CCSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC------------EEEEE------------ET-T------TTBSCCCC
T ss_pred chhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC------------ccccc------------cc-c------CCCCCCCC
Confidence 357999999999999999999999999999853 10000 11 0 11234678
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh--CCCcEEeecH--
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH--DGVDMLSVSL-- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~--~gvdVIn~Sl-- 221 (620)
..||||||||||+|.. .||||+|+|+.+|++.+. |.+..+++++||+|+++ .+++||||||
T Consensus 67 ~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~-g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~ 131 (284)
T 1sh7_A 67 CNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCS-GSGTTSGVISGVDWVAQNASGPSVANMSLGG 131 (284)
T ss_dssp SSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTT-SCBCHHHHHHHHHHHHHHCCSSEEEEECCCB
T ss_pred CCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCC-CCcCHHHHHHHHHHHHhCCCCCcEEEeCCCC
Confidence 8999999999999762 599999999999999887 67889999999999997 4799999999
Q ss_pred -----HHHHHHHHHhcCcEEEEecCCCCCCCC-ccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCc
Q 042484 222 -----VAIGSFHAVQHGIVVVCSDGNEGLVDV-TLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDK 295 (620)
Q Consensus 222 -----~~~~~~~a~~~Gv~vV~AAGN~G~~~~-t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 295 (620)
+..++.++.++|+++|+||||+|.... ..+...+++|+||+++.+
T Consensus 132 ~~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 182 (284)
T 1sh7_A 132 GQSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS----------------------------- 182 (284)
T ss_dssp SCCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT-----------------------------
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC-----------------------------
Confidence 677777888999999999999996542 234456899999995421
Q ss_pred eeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCC
Q 042484 296 LFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRH 375 (620)
Q Consensus 296 ~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 375 (620)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCH
Q 042484 376 PVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSP 446 (620)
Q Consensus 376 ~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp 446 (620)
+.++.||++|| +|||+| ..+.|..++|||||||||||++|||+|++|++++
T Consensus 183 -----------------~~~~~~S~~G~---~~di~ApG~~i~s~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~ 242 (284)
T 1sh7_A 183 -----------------DSRSSFSNWGS---CVDLFAPGSQIKSAWYDGGYKTISGTSMATPHVAGVAALYLQENNGLTP 242 (284)
T ss_dssp -----------------SBBCTTCCBST---TCCEEEECSSEEEECTTSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred -----------------CCcCcccCCCC---ccEEEeccCCeEEecCCCCEEEccChHHHHHHHHHHHHHHHHHCCCCCH
Confidence 23456888887 467766 4568999999999999999999999999999999
Q ss_pred HHHHHHHHcccccCC
Q 042484 447 AAVQSAIMTTATTQD 461 (620)
Q Consensus 447 ~~ik~~L~~TA~~~~ 461 (620)
+|||++|++||++..
T Consensus 243 ~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 243 LQLTGLLNSRASENK 257 (284)
T ss_dssp HHHHHHHHHHSEESC
T ss_pred HHHHHHHHhhCccCC
Confidence 999999999998753
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=361.80 Aligned_cols=220 Identities=28% Similarity=0.398 Sum_probs=179.2
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
...+|..+++|+||+|||||||||++||+|.+. ...+. ++ . ....++.|
T Consensus 20 ~~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~------------~~~~~------------d~-~------~~~~~~~d 68 (278)
T 2b6n_A 20 LDNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR------------ASSGY------------DF-I------DNDYDATD 68 (278)
T ss_dssp CCSEEECSCCCTTCEEEEEESCCCTTCGGGTTC------------EEEEE------------ET-T------TTBSCCCC
T ss_pred cchhcccCCCCCCCEEEEEeCCCCCCChhHhcc------------cccCe------------ec-C------CCCCCCCC
Confidence 357899999999999999999999999999753 11000 01 0 11234578
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh--CCCcEEeecH--
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH--DGVDMLSVSL-- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~--~gvdVIn~Sl-- 221 (620)
+.||||||||||+|. ..||||+|+|+.+|++.+. |.+..++++++|+|+++ .+++||||||
T Consensus 69 ~~gHGT~vAgiia~~--------------~~GvAp~a~i~~~~v~~~~-g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~ 133 (278)
T 2b6n_A 69 CNGHGTHVAGTIGGS--------------TYGVAKNVNVVGVRVLNCS-GSGSNSGVIAGINWVKNNASGPAVANMSLGG 133 (278)
T ss_dssp SSSHHHHHHHHHHCT--------------TTCSSTTCEEEEEECSCTT-SCCCHHHHHHHHHHHHHHCCSSEEEEECCCE
T ss_pred CCCcHHHHHHHHHCC--------------CcCCCCCCeEEEEEEECCC-CCccHHHHHHHHHHHHhCCCCCeEEEECCCC
Confidence 899999999999975 2599999999999999887 67889999999999997 6999999999
Q ss_pred -----HHHHHHHHHhcCcEEEEecCCCCCCCCc-cCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCc
Q 042484 222 -----VAIGSFHAVQHGIVVVCSDGNEGLVDVT-LQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDK 295 (620)
Q Consensus 222 -----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t-~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 295 (620)
+..+..++.++|+++|+||||+|..... .+...+++|+|||++.+
T Consensus 134 ~~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 184 (278)
T 2b6n_A 134 GASQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN----------------------------- 184 (278)
T ss_dssp ECCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-----------------------------
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC-----------------------------
Confidence 6677778889999999999999965432 34456899999995422
Q ss_pred eeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCC
Q 042484 296 LFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRH 375 (620)
Q Consensus 296 ~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 375 (620)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee-----------cCCCcEEeccccchhhhhhhhhhhhcccCCCC
Q 042484 376 PVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK-----------RRIPFNSISGTSMSGPYISGIAGLPKILHPDW 444 (620)
Q Consensus 376 ~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a-----------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~ 444 (620)
+.++.||++|| +|||+| ..+.|..++|||||||||||++|||+|++|++
T Consensus 185 -----------------~~~~~~S~~G~---~~di~ApG~~i~s~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~l 244 (278)
T 2b6n_A 185 -----------------DSRSSFSNYGT---CLDIYAPGSSITSSWYTSNSATNTISGTSMASPHVAGVAALYLDENPNL 244 (278)
T ss_dssp -----------------SBBCTTCCBST---TCCEEEECSSEEEECTTSTTCEEEECSHHHHHHHHHHHHHHHHHHCTTC
T ss_pred -----------------CCcCCcCCCCC---CCeEEeCCCCeECcccCCCCCEEEeCcHHHHHHHHHHHHHHHHHhCCCC
Confidence 12345777776 556666 23678999999999999999999999999999
Q ss_pred CHHHHHHHHHcccccC
Q 042484 445 SPAAVQSAIMTTATTQ 460 (620)
Q Consensus 445 sp~~ik~~L~~TA~~~ 460 (620)
+++|||++|++||++.
T Consensus 245 t~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 245 SPAQVTNLLKTRATAD 260 (278)
T ss_dssp CHHHHHHHHHHHSEES
T ss_pred CHHHHHHHHHHhCccC
Confidence 9999999999999874
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-44 Score=415.15 Aligned_cols=313 Identities=20% Similarity=0.223 Sum_probs=221.7
Q ss_pred CCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCC-CCCHHHHHHHHHHHHh-----CCCcEE
Q 042484 144 RDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMG-GCYDCDIIAAFDMAIH-----DGVDML 217 (620)
Q Consensus 144 ~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~~i~~ai~~a~~-----~gvdVI 217 (620)
.|+.||||||||||||.. + +..+.||||+|+|+.+|++....+ .+..+.++++|.+|++ .|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N--------~~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-S--------SRDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-S--------SSSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-C--------CCCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478999999999999986 2 355889999999999999976522 2356778888888887 799999
Q ss_pred eecH-----------HHHHHHHHH-hcCcEEEEecCCCCCCCCccCCC----CCceEEecccccCCcccceEEeCCCeEE
Q 042484 218 SVSL-----------VAIGSFHAV-QHGIVVVCSDGNEGLVDVTLQNA----APRQIVVGASTMDRDLSNYVVLGNNKRF 281 (620)
Q Consensus 218 n~Sl-----------~~~~~~~a~-~~Gv~vV~AAGN~G~~~~t~~~~----ap~vitVga~~~~~~~~~~~~~g~~~~~ 281 (620)
|||| +..++.++. ++|++||+||||+|+...++..| ++++|+|||++.+........
T Consensus 338 NmS~G~~~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys------- 410 (1354)
T 3lxu_X 338 NMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYA------- 410 (1354)
T ss_dssp EECCCCCCSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC----------
T ss_pred EcCCccCCCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccccc-------
Confidence 9999 455666665 89999999999999876665443 589999999754332100000
Q ss_pred EEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeec
Q 042484 282 KLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITF 361 (620)
Q Consensus 282 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~ 361 (620)
T Consensus 411 -------------------------------------------------------------------------------- 410 (1354)
T 3lxu_X 411 -------------------------------------------------------------------------------- 410 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceee-----------cCCCcEEeccccchh
Q 042484 362 NDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK-----------RRIPFNSISGTSMSG 427 (620)
Q Consensus 362 ~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a-----------~~~~y~~~sGTSMAa 427 (620)
......+.++.||||||+ ..||||+| ..+.|..++||||||
T Consensus 411 -------------------------~~~~~~g~~asFSS~GPt~dg~~KpDIaAPG~~I~St~~~~~~~y~~~SGTSmAA 465 (1354)
T 3lxu_X 411 -------------------------MREKLPGNVYTWTSRDPCIDGGQGVTVCAPGGAIASVPQFTMSKSQLMNGTSMAA 465 (1354)
T ss_dssp --------------------------------CCCCCCCCSCCSSSSCCEEEEEEC---------------CCCCGGGCH
T ss_pred -------------------------cccCCCCccccccCCCCCccCCCcceEEecCceEEEeecCCCCceecCCCCCHHH
Confidence 000112467899999997 68999999 246789999999999
Q ss_pred hhhhhhhhhhcc----cCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCCCceeeecCchh
Q 042484 428 PYISGIAGLPKI----LHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDPGLVYYLTVND 503 (620)
Q Consensus 428 P~VAG~aALl~~----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~~~lv~~~~~~d 503 (620)
|||||++|||++ .+|+|++++||++|++||+++.. .+++.||+|+||+.+|++..+.++..+.+
T Consensus 466 P~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~------------~~~~~~G~GlLDa~~AV~~a~~~~~~p~~ 533 (1354)
T 3lxu_X 466 PHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY------------VDPFAQGHGLLNVEKAFEHLTEHRQSKDN 533 (1354)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT------------SCTTTSSSSBCCHHHHHHHHHTTTTCGGG
T ss_pred HHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC------------CCcccccCCEeCHHHHHHHHHhcCCCCcc
Confidence 999999999986 89999999999999999998642 34678999999999999999999999999
Q ss_pred hHHhhhhcCCCcc-eeeeccCCccccCCCCCccccccCCCeEEeeccCceEEEEEEE----EE---cCC----CceEEEE
Q 042484 504 YLNFLCALGYNKN-VISLFSTNCTYTCPKNAIILVNFNYPSITVPKLSGSITVTRRV----KN---VGS----PGTYQAR 571 (620)
Q Consensus 504 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ln~psi~~~~~~~~~~~~rtv----~n---~~~----~~ty~~~ 571 (620)
++.|.|..++... .+- |-.+ ......+++++| .| ..+ ...-++.
T Consensus 534 ~v~f~~~v~~~~~rgIy-------------------lR~~-----~~~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~ 589 (1354)
T 3lxu_X 534 MLRFSVRVGNNADKGIH-------------------LRQG-----VQRNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLN 589 (1354)
T ss_dssp GEEEEEEETTTTBSSEE-------------------ECSS-----CCCSCEEEEEEEEEEESSCSCSSSTTCSCCCCEEE
T ss_pred ceEEEEEecCCCCCceE-------------------Eecc-----ccCCceEEEEEEeeeecCcccCChhhccceEEEEE
Confidence 9999998874322 110 1111 001223333333 11 111 2222333
Q ss_pred EeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEccccCCCCeEEEEEE
Q 042484 572 VKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKNASVTKDYVFGELI 619 (620)
Q Consensus 572 ~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~g~~~ 619 (620)
+.... .+-.-|+.|.+ .++.++|.|++++.. ...+..|+++.
T Consensus 590 L~~t~--~wv~~p~~l~l--~~~~r~~~v~vDp~~--L~~G~h~~~v~ 631 (1354)
T 3lxu_X 590 LIASQ--PWVQCGAFLDL--SYGTRSIAVRVDPTG--LQPGVHSAVIR 631 (1354)
T ss_dssp EEESS--TTEEECSCEEC--TTSCEEEEEEECGGG--CCSEEEEEEEE
T ss_pred EecCC--Cceecccceee--cCCCceEEEEECCCC--CCCcceeEEEE
Confidence 33222 12223888777 788899999999876 56677887763
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=358.98 Aligned_cols=220 Identities=23% Similarity=0.327 Sum_probs=180.2
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
...+|..+.+|+||+|||||||||++||+|.+. .+. ++.. ....+.|
T Consensus 20 ~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~-------~~~-------------------~~~~-------~~~~~~d 66 (276)
T 4dzt_A 20 LSNSYTYTATGRGVNVYVIDTGIRTTHREFGGR-------ARV-------------------GYDA-------LGGNGQD 66 (276)
T ss_dssp CCSCEECSCCCTTCEEEEEESCCCTTCGGGTTC-------EEE-------------------EEET-------TSSCSCC
T ss_pred cccceecCCCCCCcEEEEEccCCCCCChhHccC-------eec-------------------cccC-------CCCCCCC
Confidence 458899999999999999999999999999753 001 1100 0134567
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC--CCcEEeecH--
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD--GVDMLSVSL-- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~--gvdVIn~Sl-- 221 (620)
..||||||||||+|.. .||||+|+|+.+|++.+. +.+..+.++++++|+++. +++||||||
T Consensus 67 ~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~-~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~ 131 (276)
T 4dzt_A 67 CNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCN-GSGSTSGVIAGVDWVTRNHRRPAVANMSLGG 131 (276)
T ss_dssp SSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT-SCCCHHHHHHHHHHHHHHCCSSEEEEECCCE
T ss_pred CCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCC-CCcCHHHHHHHHHHHHhcCCCCeEEEECCCC
Confidence 8899999999999762 599999999999999887 778999999999999987 999999999
Q ss_pred -----HHHHHHHHHhcCcEEEEecCCCCCCCCcc-CCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCc
Q 042484 222 -----VAIGSFHAVQHGIVVVCSDGNEGLVDVTL-QNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDK 295 (620)
Q Consensus 222 -----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~-~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 295 (620)
+..+...+.++|+++|+||||+|...... +...+.+|+|||++.+
T Consensus 132 ~~~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 182 (276)
T 4dzt_A 132 GVSTALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS----------------------------- 182 (276)
T ss_dssp ECCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-----------------------------
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC-----------------------------
Confidence 67778888899999999999999654333 4456899999995422
Q ss_pred eeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCC
Q 042484 296 LFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRH 375 (620)
Q Consensus 296 ~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 375 (620)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee-----------cCCCcEEeccccchhhhhhhhhhhhcccCCCC
Q 042484 376 PVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK-----------RRIPFNSISGTSMSGPYISGIAGLPKILHPDW 444 (620)
Q Consensus 376 ~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a-----------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~ 444 (620)
+.++.||++||. +||.| ....|..++|||||||||||++|||+|++|++
T Consensus 183 -----------------~~~~~~S~~g~~---~dv~ApG~~i~s~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~l 242 (276)
T 4dzt_A 183 -----------------DARASFSNYGSC---VDLFAPGASIPSAWYTSDTATQTLNGTSMATPHVAGVAALYLEQNPSA 242 (276)
T ss_dssp -----------------SBBCTTCCBSTT---CCEEEECSSEEEECTTSSSCEEEECSHHHHHHHHHHHHHHHHHHCTTC
T ss_pred -----------------CCcCCcCCCCCC---ceEEeCCCCeEccccCCCCceEEeeEHHHHHHHHHHHHHHHHHHCCCC
Confidence 224457777763 45555 23478999999999999999999999999999
Q ss_pred CHHHHHHHHHcccccCCC
Q 042484 445 SPAAVQSAIMTTATTQDN 462 (620)
Q Consensus 445 sp~~ik~~L~~TA~~~~~ 462 (620)
+++|||++|++||++...
T Consensus 243 t~~~v~~~L~~tA~~~~~ 260 (276)
T 4dzt_A 243 TPASVASAILNGATTGRL 260 (276)
T ss_dssp CHHHHHHHHHHHSEESCC
T ss_pred CHHHHHHHHHhhCcCCcc
Confidence 999999999999998643
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=389.80 Aligned_cols=266 Identities=17% Similarity=0.169 Sum_probs=189.9
Q ss_pred CCCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccc-cccCCCCCCCCCC
Q 042484 64 IPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDY-AVHKGPLNSSFYS 142 (620)
Q Consensus 64 ~~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~-~~~~~~~~~~~~~ 142 (620)
+++..+|+.+++|+||+|||||||||++||+|.+.- +. ..+| .. .. .....+
T Consensus 41 i~~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~~-----------------~~~~d~~-~~--~~~~~p 93 (503)
T 2id4_A 41 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------CA-----------------EGSWDFN-DN--TNLPKP 93 (503)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------CG-----------------GGCEETT-TT--BSCCCC
T ss_pred cChHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------cc-----------------cCcccCC-CC--CCCCCC
Confidence 456799999999999999999999999999998631 00 0011 00 00 011122
Q ss_pred CCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-
Q 042484 143 ARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL- 221 (620)
Q Consensus 143 ~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl- 221 (620)
..|..||||||||||||...+ +..+.||||+|+|+.+|++... ++..++++||++|++.+ +||||||
T Consensus 94 ~~d~~gHGT~vAGiiaa~~~n--------~~~~~GvAp~a~i~~~rv~~~~---~~~~~~~~ai~~a~~~~-~Iin~S~G 161 (503)
T 2id4_A 94 RLSDDYHGTRCAGEIAAKKGN--------NFCGVGVGYNAKISGIRILSGD---ITTEDEAASLIYGLDVN-DIYSCSWG 161 (503)
T ss_dssp CSTTTTHHHHHHHHHHCCSSS--------SSSCCCTTTTSEEEEEECTTSC---CCHHHHHHHTTTTTTTC-SEEEECEE
T ss_pred CCCCCChHHHHHHHHHhccCC--------CCCcEEECCCCEEEEEEeeCCC---CChHHHHHHHHhHhhcC-CEEEeCCC
Confidence 357889999999999987633 2346899999999999999743 78899999999999988 9999999
Q ss_pred --------------HHHHHHHHH-----hcCcEEEEecCCCCCCCC--ccCC--CCCceEEecccccCCcccceEEeCCC
Q 042484 222 --------------VAIGSFHAV-----QHGIVVVCSDGNEGLVDV--TLQN--AAPRQIVVGASTMDRDLSNYVVLGNN 278 (620)
Q Consensus 222 --------------~~~~~~~a~-----~~Gv~vV~AAGN~G~~~~--t~~~--~ap~vitVga~~~~~~~~~~~~~g~~ 278 (620)
+..+..++. .+|+++|+||||+|.... .... .++++|+|||++.+...
T Consensus 162 ~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~~~~--------- 232 (503)
T 2id4_A 162 PADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLH--------- 232 (503)
T ss_dssp SCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTTSCC---------
T ss_pred cCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCCCCc---------
Confidence 334444554 479999999999996432 2222 35789999997644321
Q ss_pred eEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEE
Q 042484 279 KRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASV 358 (620)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~ 358 (620)
T Consensus 233 -------------------------------------------------------------------------------- 232 (503)
T 2id4_A 233 -------------------------------------------------------------------------------- 232 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCC--------CCCceee---cCCCcEEeccccchh
Q 042484 359 ITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIH--------ITPEILK---RRIPFNSISGTSMSG 427 (620)
Q Consensus 359 i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~--------~kPdi~a---~~~~y~~~sGTSMAa 427 (620)
+.||++||.. ...+|.. .++.|..++||||||
T Consensus 233 -------------------------------------a~~S~~g~~~~~~a~~~gpG~~I~st~~~~~~~~~~sGTS~Aa 275 (503)
T 2id4_A 233 -------------------------------------PPYSEGCSAVMAVTYSSGSGEYIHSSDINGRCSNSHGGTSAAA 275 (503)
T ss_dssp -------------------------------------CTTCCCCTTEEEEEECSBTTBCEEEECSTTCEEEEECSHHHHH
T ss_pred -------------------------------------CCcCCCCCcceEeecCCCCCCceEeecCCCCceecCCCccccc
Confidence 1122222210 0001111 246789999999999
Q ss_pred hhhhhhhhhhcccCCCCCHHHHHHHHHcccccCCCC-cceeccCCCCCCCCceecccccCccccCCCc
Q 042484 428 PYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNK-KQQILDASFTEATPFSYGAGHVQPNLAMDPG 494 (620)
Q Consensus 428 P~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~-~~~~~~~~~~~~~~~~~GaG~vn~~~A~~~~ 494 (620)
|||||++|||+|++|+|+++|||++|+.||++++.. ................||+|+||+.+|++..
T Consensus 276 P~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~~g~~~~~~~G~G~vda~~Av~~a 343 (503)
T 2id4_A 276 PLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMS 343 (503)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHHH
T ss_pred hhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecCCCCccCcccCCcEecHHHHHHHH
Confidence 999999999999999999999999999999987653 1111111111223457999999999999843
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=358.78 Aligned_cols=212 Identities=27% Similarity=0.339 Sum_probs=175.2
Q ss_pred ccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCC
Q 042484 69 IWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNG 148 (620)
Q Consensus 69 ~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~g 148 (620)
.|+. .+|+||+|+|||||||++||+|.+. .. .++.. ..++.|..|
T Consensus 24 ~~~~-~~G~gv~VaViDsGvd~~H~~l~~~------------~~--------------~~~~~--------~~~~~d~~g 68 (279)
T 2pwa_A 24 YYDE-SAGQGSCVYVIDTGIEASHPEFEGR------------AQ--------------MVKTY--------YYSSRDGNG 68 (279)
T ss_dssp ECCT-TTTTTEEEEEEESCCCTTCGGGTTC------------EE--------------EEEES--------SSCSSCSSS
T ss_pred cccC-CCCCCCEEEEEeCCCCCCChhHhCc------------cc--------------cccCC--------CCCCCCCCC
Confidence 5553 7899999999999999999999753 11 01100 023567899
Q ss_pred ChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCC-------cEEeecH
Q 042484 149 HGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGV-------DMLSVSL 221 (620)
Q Consensus 149 HGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gv-------dVIn~Sl 221 (620)
|||||||||+|+ ..||||+|+|+.+|++.+. |.+..++++++|+|++++++ +||||||
T Consensus 69 HGT~vAgiia~~--------------~~GvAp~a~i~~~~v~~~~-g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~ 133 (279)
T 2pwa_A 69 HGTHCAGTVGSR--------------TYGVAKKTQLFGVKVLDDN-GSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSL 133 (279)
T ss_dssp HHHHHHHHHHCT--------------TTCSSTTCEEEEEECSCTT-SCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECC
T ss_pred CHHHHHHHHHhc--------------ccccCCCCEEEEEEeEcCC-CCcCHHHHHHHHHHHHhcCccccCCCccEEEecC
Confidence 999999999975 3599999999999999887 67889999999999999888 9999999
Q ss_pred -------HHHHHHHHHhcCcEEEEecCCCCCCCCc-cCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCC
Q 042484 222 -------VAIGSFHAVQHGIVVVCSDGNEGLVDVT-LQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPS 293 (620)
Q Consensus 222 -------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t-~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 293 (620)
+..++.++.++|+++|+||||+|..... .+...+++|+|||++.+
T Consensus 134 G~~~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 186 (279)
T 2pwa_A 134 GGGYSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY--------------------------- 186 (279)
T ss_dssp CEECCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---------------------------
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC---------------------------
Confidence 6777778889999999999999965432 34456899999995422
Q ss_pred CceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccC
Q 042484 294 DKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFT 373 (620)
Q Consensus 294 ~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 373 (620)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCC
Q 042484 374 RHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDW 444 (620)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~ 444 (620)
+.++.||++|| +|||.| ..+.|..++|||||||||||++|||+|+ |++
T Consensus 187 -------------------~~~~~~S~~G~---~~di~APG~~i~s~~~~~~~~~~sGTS~AaP~VaG~aAll~~~-p~l 243 (279)
T 2pwa_A 187 -------------------DRRSSFSNYGS---VLDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYLMTL-GKT 243 (279)
T ss_dssp -------------------SBBCTTCCBST---TCCEEEECSSEEEEETTTEEEEECSHHHHHHHHHHHHHHHHHT-TSC
T ss_pred -------------------CCcCCcCCCCC---cceEEEecCCeEEeecCCCEEEcCChHHHHHHHHHHHHHHHhC-CCC
Confidence 23457888888 467777 4567899999999999999999999999 999
Q ss_pred CHHHHHHHHHcccccC
Q 042484 445 SPAAVQSAIMTTATTQ 460 (620)
Q Consensus 445 sp~~ik~~L~~TA~~~ 460 (620)
+|+|||++|++||++.
T Consensus 244 t~~~v~~~L~~tA~~~ 259 (279)
T 2pwa_A 244 TAASACRYIADTANKG 259 (279)
T ss_dssp CTTTHHHHHHHHSEES
T ss_pred CHHHHHHHHHHhCccc
Confidence 9999999999999875
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=378.30 Aligned_cols=261 Identities=15% Similarity=0.146 Sum_probs=183.7
Q ss_pred cccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCC
Q 042484 68 SIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKN 147 (620)
Q Consensus 68 ~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~ 147 (620)
..|..+++|+||+|+|||||||++||+|.+.- .+.+... +.+. ++ ......+.|..
T Consensus 17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~------~~~~~~~------------v~~~----dg--~~f~~~~~D~~ 72 (546)
T 2qtw_B 17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV------MVTDFEN------------VPEE----DG--TRFHRQASKCD 72 (546)
T ss_dssp -------CCTTSEEEEEESCCCTTSTTTTTTE------EEEEEEC------------CCCC----C---------CTTTT
T ss_pred hhcccCCCCCCcEEEEECCCCCCCChHHcccc------cccCccc------------ccCC----CC--ccccCCCCCCC
Confidence 47888999999999999999999999998530 0000000 0000 00 00013456889
Q ss_pred CChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC------CCcEEeecH
Q 042484 148 GHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD------GVDMLSVSL 221 (620)
Q Consensus 148 gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~------gvdVIn~Sl 221 (620)
||||||||||+|+. .||||+|+|+.+|+++++ |.++.+++++||+|+++. +++||||||
T Consensus 73 GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~-G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSl 137 (546)
T 2qtw_B 73 SHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQ-GKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPL 137 (546)
T ss_dssp HHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT-SEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECE
T ss_pred ChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCC-CCcCHHHHHHHHHHHHHhhhhccCCCeEEEecC
Confidence 99999999999763 599999999999999887 678899999999999974 999999999
Q ss_pred -------HHHHHHHHHhcCcEEEEecCCCCCCCCc-cCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCC
Q 042484 222 -------VAIGSFHAVQHGIVVVCSDGNEGLVDVT-LQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPS 293 (620)
Q Consensus 222 -------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t-~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 293 (620)
+..++.++.++|++||+||||+|.+... .+...+++|+|||++.+....
T Consensus 138 Gg~~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~a----------------------- 194 (546)
T 2qtw_B 138 AGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPV----------------------- 194 (546)
T ss_dssp EEECCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCBC-----------------------
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCcc-----------------------
Confidence 6777788889999999999999965422 244569999999965332100
Q ss_pred CceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccC
Q 042484 294 DKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFT 373 (620)
Q Consensus 294 ~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 373 (620)
T Consensus 195 -------------------------------------------------------------------------------- 194 (546)
T 2qtw_B 195 -------------------------------------------------------------------------------- 194 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee-----------cCCCcEEeccccchhhhhhhhhhhhcccCC
Q 042484 374 RHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK-----------RRIPFNSISGTSMSGPYISGIAGLPKILHP 442 (620)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a-----------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P 442 (620)
..-..||++|| +|||+| ....|..++|||||||||||++|||+|++|
T Consensus 195 -------------------~~s~~fSn~G~---~vDI~APG~~I~St~~~~~~~y~~~SGTSmAAP~VAG~aALlls~~P 252 (546)
T 2qtw_B 195 -------------------TLGTLGTNFGR---CVDLFAPGEDIIGASSDCSTCFVSQSGTSQAAAHVAGIAAMMLSAEP 252 (546)
T ss_dssp -------------------EETTEECCBST---TCCEEEECSSEEEECTTSTTCEEEECSHHHHHHHHHHHHHHHHHHST
T ss_pred -------------------cccCCcCCCCC---cceEEecCccEEeeccCCCCcEeeeCcCcHHHHHHHHHHHHHHHHCC
Confidence 00012677776 677777 125689999999999999999999999999
Q ss_pred CCCHHHHHHHHHcccccCCCCcceec------cCC---CCCCCCceecccc--cCccccCC
Q 042484 443 DWSPAAVQSAIMTTATTQDNKKQQIL------DAS---FTEATPFSYGAGH--VQPNLAMD 492 (620)
Q Consensus 443 ~~sp~~ik~~L~~TA~~~~~~~~~~~------~~~---~~~~~~~~~GaG~--vn~~~A~~ 492 (620)
+|+|+|||++|++||.+.......+. ... ..+...+++|+|+ .+++.+..
T Consensus 253 ~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 253 ELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp TCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred CCCHHHHHHHHHHhccccccCCccCccccCCCCccchhccCCcccccCCCcchhchhccCC
Confidence 99999999999999976432211000 000 1122456788888 77777765
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-42 Score=386.76 Aligned_cols=307 Identities=18% Similarity=0.142 Sum_probs=190.7
Q ss_pred CCCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCC
Q 042484 64 IPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSA 143 (620)
Q Consensus 64 ~~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 143 (620)
+++..+|+++++|+||+|||||||||++||||.++ ...+.. .|..+ ..++.+.
T Consensus 57 inv~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n------------~~~~~~-------~~~~~--------~~dp~p~ 109 (600)
T 3hjr_A 57 LNLWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADN------------VRPGSK-------NVVTG--------SDDPTPT 109 (600)
T ss_dssp CCCHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGG------------BCSCCB-------CTTTS--------SSCCCCC
T ss_pred cCHHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhc------------cccCcc-------eeecC--------CCCCCCC
Confidence 45679999999999999999999999999999853 100000 01111 0112233
Q ss_pred CCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHH-HHHHhCCCcEEeecH-
Q 042484 144 RDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAF-DMAIHDGVDMLSVSL- 221 (620)
Q Consensus 144 ~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai-~~a~~~gvdVIn~Sl- 221 (620)
.|..||||||||||||.. ++..+.||||+|+|+.+|++++. +.+..++++.|+ +++..++++|||+||
T Consensus 110 ~~~~gHGThVAGiIAa~~---------n~~g~~GVAp~A~l~~~rvl~~~-~~~~~~~~~~a~~~~~~~~~~~I~n~S~G 179 (600)
T 3hjr_A 110 DPDTAHGTSVSGIIAAVD---------NAIGTKGIAPRAQLQGFNLLDDN-SQQLQKDWLYALGDSNASRDNRVFNQSYG 179 (600)
T ss_dssp STTCCHHHHHHHHHHCCS---------SSSSCCCSSTTCEEEEECTTSTT-CCCCHHHHHHHTTSSHHHHTCSEEEECCC
T ss_pred CCCCChHHHHHHHHhEeC---------CCCCcEEeCCCCEEEEEEeecCC-CCccHHHHHHHhhhhhhhcCCCEEecccC
Confidence 467899999999999864 12347899999999999999887 667778877776 677888999999999
Q ss_pred -----------H-----HHHHH--HHHhcCcEEEEecCCCCCC--------------------CCcc--CCCCCceEEec
Q 042484 222 -----------V-----AIGSF--HAVQHGIVVVCSDGNEGLV--------------------DVTL--QNAAPRQIVVG 261 (620)
Q Consensus 222 -----------~-----~~~~~--~a~~~Gv~vV~AAGN~G~~--------------------~~t~--~~~ap~vitVg 261 (620)
. ..... ....+|+++|+||||.+.. .... ....+++|+||
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~~IsVg 259 (600)
T 3hjr_A 180 MSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLDPSNSNFWNLVVS 259 (600)
T ss_dssp CCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTTSSGGGGSSSEEEEE
T ss_pred ccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCcccccccCccccCcceEEe
Confidence 1 11111 1236899999999997521 0111 11247899999
Q ss_pred ccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCC
Q 042484 262 ASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLP 341 (620)
Q Consensus 262 a~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~ 341 (620)
|++.+.....+...+....+....-...
T Consensus 260 A~~~~g~~a~yS~~G~~v~~~apg~~~~---------------------------------------------------- 287 (600)
T 3hjr_A 260 ALNADGVRSSYSSVGSNIFLSATGGEYG---------------------------------------------------- 287 (600)
T ss_dssp EECTTSSBCTTCCBCTTCCEEEECCSCS----------------------------------------------------
T ss_pred eecCCCCEeecccCCcceeeccCCCCCC----------------------------------------------------
Confidence 9876654333222222111111100000
Q ss_pred CCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceeecCCCcEEec
Q 042484 342 EFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILKRRIPFNSIS 421 (620)
Q Consensus 342 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a~~~~y~~~s 421 (620)
.....++.. ...|..+ ............-.+.... ......|..++
T Consensus 288 -------~~~~~~vt~---~~pG~~~--------------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s 333 (600)
T 3hjr_A 288 -------TDTPAMVTT---DLPGCDM--------------------GYNRTDDPSTNRLHGNSQL----DASCDYNGVMN 333 (600)
T ss_dssp -------SSSCCEEEE---CCSSTTS--------------------SSSSTTSCCSSTTTTCTTT----CTTCCEEEEEC
T ss_pred -------CCCcceeee---cCCCccc--------------------cccccCCcccccccccccc----CCCCCceeccc
Confidence 000000000 0000000 0000000000000000000 00346789999
Q ss_pred cccchhhhhhhhhhhhcccCCCCCHHHHHHHHHcccccCCCCcceeccC-------------------C-CCCCCCceec
Q 042484 422 GTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDA-------------------S-FTEATPFSYG 481 (620)
Q Consensus 422 GTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~-------------------~-~~~~~~~~~G 481 (620)
|||||||||||++|||+|+||+||++|||++|++||++++....|+... . ....-...||
T Consensus 334 GTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yG 413 (600)
T 3hjr_A 334 GTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYG 413 (600)
T ss_dssp SHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTB
T ss_pred cccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccC
Confidence 9999999999999999999999999999999999999998776653210 0 1111245689
Q ss_pred ccccCccccCCC
Q 042484 482 AGHVQPNLAMDP 493 (620)
Q Consensus 482 aG~vn~~~A~~~ 493 (620)
+|+||+.+|++.
T Consensus 414 fG~vDA~~aV~~ 425 (600)
T 3hjr_A 414 FGLIDVNKALEL 425 (600)
T ss_dssp TCBCCHHHHHHH
T ss_pred CceecHHHHHHH
Confidence 999999999874
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=351.31 Aligned_cols=215 Identities=27% Similarity=0.334 Sum_probs=176.4
Q ss_pred ccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCC
Q 042484 67 NSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDK 146 (620)
Q Consensus 67 ~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~ 146 (620)
...|+.. +|+||+|||||||||++||+|.+. ... ..+| .....|.
T Consensus 23 ~~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~------------~~~------------~~~~----------~~~~~d~ 67 (279)
T 3f7m_A 23 AYAYDTS-AGAGACVYVIDTGVEDTHPDFEGR------------AKQ------------IKSY----------ASTARDG 67 (279)
T ss_dssp SEEECTT-TTTTEEEEEEESCCCTTCGGGTTC------------EEE------------EEEC----------SSSSSCS
T ss_pred ceeecCC-CCCCCEEEEEcCCCCCCChhhccc------------ccc------------ccCC----------CCCCCCC
Confidence 3677766 899999999999999999999753 000 0011 0112378
Q ss_pred CCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCC-------CcEEee
Q 042484 147 NGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDG-------VDMLSV 219 (620)
Q Consensus 147 ~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~g-------vdVIn~ 219 (620)
.||||||||||+|+ ..||||+|+|+.+|++... +.+..+.++++|+++++++ ++||||
T Consensus 68 ~gHGT~vAgii~~~--------------~~GvAp~a~l~~~~v~~~~-~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~ 132 (279)
T 3f7m_A 68 HGHGTHCAGTIGSK--------------TWGVAKKVSIFGVKVLDDS-GSGSLSNIIAGMDFVASDRQSRNCPRRTVASM 132 (279)
T ss_dssp SSHHHHHHHHHHCT--------------TTCSSTTCEEEEEECSCTT-SCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEE
T ss_pred CCcHHHHHHHHhcC--------------ccccCCCCEEEEEEeeCCC-CCcCHHHHHHHHHHHHhccccccCCCCeEEEe
Confidence 89999999999975 3599999999999999887 7789999999999999976 899999
Q ss_pred cH-------HHHHHHHHHhcCcEEEEecCCCCCCCCcc-CCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCC
Q 042484 220 SL-------VAIGSFHAVQHGIVVVCSDGNEGLVDVTL-QNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGL 291 (620)
Q Consensus 220 Sl-------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~-~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 291 (620)
|| +..+...+.++|+++|+||||+|...... +...+++|+|||++.+
T Consensus 133 S~g~~~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------- 187 (279)
T 3f7m_A 133 SLGGGYSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN------------------------- 187 (279)
T ss_dssp CCCEECCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-------------------------
T ss_pred CCCcCccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC-------------------------
Confidence 99 67778888899999999999999654333 4456899999995422
Q ss_pred CCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecc
Q 042484 292 PSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFT 371 (620)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 371 (620)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCC
Q 042484 372 FTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHP 442 (620)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P 442 (620)
+.++.||++|| ++||.| ..+.|..++|||||||||||++|||+|++|
T Consensus 188 ---------------------~~~~~~S~~g~---~~di~ApG~~i~s~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~p 243 (279)
T 3f7m_A 188 ---------------------DVRSTFSNYGR---VVDIFAPGTSITSTWIGGRTNTISGTSMATPHIAGLAAYLFGLEG 243 (279)
T ss_dssp ---------------------SBBCTTCCBST---TCCEEEECSSEEEECGGGCEEEECSHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------------CCCCCCCCCCC---CCeEEECCCCeEeecCCCCEEEeeEHHHHHHHHHHHHHHHHHhCC
Confidence 23456888887 567776 556799999999999999999999999999
Q ss_pred CCCHHHHHHHHHcccccCC
Q 042484 443 DWSPAAVQSAIMTTATTQD 461 (620)
Q Consensus 443 ~~sp~~ik~~L~~TA~~~~ 461 (620)
+ ++++||++|++||++..
T Consensus 244 ~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 244 G-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp C-CTTTHHHHHHHHSEESC
T ss_pred C-CHHHHHHHHHHhccccc
Confidence 9 99999999999998753
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-22 Score=224.43 Aligned_cols=86 Identities=24% Similarity=0.382 Sum_probs=68.7
Q ss_pred eeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh---CCCcEEeecH--------------HHHHHHHHHhcCcEE
Q 042484 174 TAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH---DGVDMLSVSL--------------VAIGSFHAVQHGIVV 236 (620)
Q Consensus 174 ~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~---~gvdVIn~Sl--------------~~~~~~~a~~~Gv~v 236 (620)
.+.||||+|+|+.|++. ...+.++++|++|++ ++++|||||| +..+...|..+||+|
T Consensus 273 ~~~gvAp~a~i~~~~~~------~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~v 346 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP------NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTV 346 (552)
T ss_dssp HHHHHCTTSEEEEEECC------SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hhhccCCCCeEEEEEcC------CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEE
Confidence 46799999999999963 246789999999998 7999999999 233445677899999
Q ss_pred EEecCCCCCCCC------c--cCCCCCceEEeccccc
Q 042484 237 VCSDGNEGLVDV------T--LQNAAPRQIVVGASTM 265 (620)
Q Consensus 237 V~AAGN~G~~~~------t--~~~~ap~vitVga~~~ 265 (620)
|+||||+|.... + .+...|+|++||+++.
T Consensus 347 v~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 347 LAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 999999996432 2 2334699999999764
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=182.56 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=69.9
Q ss_pred eeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh-CCCcEEeecH---------------HHHHHHHHHhcCcEEEEe
Q 042484 176 KGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH-DGVDMLSVSL---------------VAIGSFHAVQHGIVVVCS 239 (620)
Q Consensus 176 ~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~-~gvdVIn~Sl---------------~~~~~~~a~~~Gv~vV~A 239 (620)
..+||+++++.|++.... .+..++++++|++|++ ++++|||||| +..+...|..+||+||+|
T Consensus 90 g~~aP~a~~~~~~~~~~~--~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~A 167 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQS--ASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVS 167 (372)
T ss_dssp HHTTSCEEEEEEEEECTT--SSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhcCCCCcEEEEEeCCCC--CcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 357899999999998654 2678899999999998 8999999999 122334566799999999
Q ss_pred cCCCCCCCC-------------ccCCCCCceEEecccccC
Q 042484 240 DGNEGLVDV-------------TLQNAAPRQIVVGASTMD 266 (620)
Q Consensus 240 AGN~G~~~~-------------t~~~~ap~vitVga~~~~ 266 (620)
+||+|...+ ..+...|+|++||+++..
T Consensus 168 sGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 168 SGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp CCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred ECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 999996532 222346999999997643
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=4.2e-08 Score=107.82 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=54.5
Q ss_pred eeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHH--hCCCcEEeecH--------------HHHHHHHHHhcCcEEEEe
Q 042484 176 KGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAI--HDGVDMLSVSL--------------VAIGSFHAVQHGIVVVCS 239 (620)
Q Consensus 176 ~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~--~~gvdVIn~Sl--------------~~~~~~~a~~~Gv~vV~A 239 (620)
.+++++..++.|-..... ...+..+..+++.. .+-++|||+|| +......+..+||.|++|
T Consensus 262 ~a~~~~i~~~~~~~~g~~---~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~A 338 (544)
T 3edy_A 262 MSAGANISTWVYSSPGRH---EGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFA 338 (544)
T ss_dssp HHHSTTSEEEEECCCSCC---TTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hccCCCceEEEEecCCcc---cccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 345556666555432211 11233444444333 34678999999 233445677899999999
Q ss_pred cCCCCCCCC----------ccCCCCCceEEeccccc
Q 042484 240 DGNEGLVDV----------TLQNAAPRQIVVGASTM 265 (620)
Q Consensus 240 AGN~G~~~~----------t~~~~ap~vitVga~~~ 265 (620)
+||+|.... ..+...|||++||+++.
T Consensus 339 SGD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 339 SGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp CCSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred cCCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 999996432 23334699999999864
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-06 Score=70.21 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=43.1
Q ss_pred ccceeEEecceeeeEEEEcCHHHHHHHhcCCCeEEEEeceeeeeccCC
Q 042484 4 AHAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTH 51 (620)
Q Consensus 4 ~~~~~~~y~~~~~G~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~~~~~ 51 (620)
..+++|+|++ |+||++++++++++.|+++|+|++|+|++.++++++.
T Consensus 33 g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 33 GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSAT 79 (80)
T ss_dssp TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEECCC-
T ss_pred CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEeeec
Confidence 4578999998 9999999999999999999999999999999988764
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.05 E-value=4.7e-06 Score=72.25 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=41.7
Q ss_pred cccceeEEecceeeeEEEEcCHHHHHHHhcCCCeEEEEeceeeee
Q 042484 3 LAHAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKL 47 (620)
Q Consensus 3 ~~~~~~~~y~~~~~G~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~ 47 (620)
...+++|.|++.|+||+++++++++++|+++|+|++|+|++.++.
T Consensus 69 ~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 69 YLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp CCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred cCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 345899999999999999999999999999999999999998765
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=97.74 E-value=2.9e-05 Score=68.10 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=40.5
Q ss_pred cceeEEecceeeeEEEEcCHHHHHHHhcCCCeEEEEeceeeee
Q 042484 5 HAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKL 47 (620)
Q Consensus 5 ~~~~~~y~~~~~G~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~ 47 (620)
.+++|+|++.|+||++++++++++.|+++|+|.+|++++.++.
T Consensus 81 ~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 81 TKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp CEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 4789999999999999999999999999999999999998765
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=5.3e-05 Score=71.45 Aligned_cols=77 Identities=16% Similarity=0.001 Sum_probs=62.0
Q ss_pred ccccEEEEEe---ccchhHHHHHHHcCCcEEEEecCCCCCCc---cc-CCCccccEEEeecCCccee-eecccCCCcEEE
Q 042484 308 VKGKILVCLN---VRSVDEGLQAALAGAADIVLVNLPEFGND---HT-TDRHVLPASVITFNDGYYN-LFFTFTRHPVGY 379 (620)
Q Consensus 308 ~~gkivl~~~---~~~~~~~~~~~~~ga~gvi~~~~~~~~~~---~~-~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~~ 379 (620)
.++||+|++| |+|.+|..+++++||.++|+||+...+.. +. .....+|.++|+..+|+.| +.+..+...+++
T Consensus 103 ~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvt 182 (194)
T 3icu_A 103 QVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMV 182 (194)
T ss_dssp BCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEECHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEECHHHHHHHHHHHHCCCeEEEE
Confidence 4689999999 78999999999999999999998532211 11 1235799999999999999 999988888877
Q ss_pred EeCCc
Q 042484 380 IKRPT 384 (620)
Q Consensus 380 i~~~~ 384 (620)
|....
T Consensus 183 i~vg~ 187 (194)
T 3icu_A 183 IEVGK 187 (194)
T ss_dssp EEEEE
T ss_pred EECCC
Confidence 76543
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00019 Score=57.16 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=38.6
Q ss_pred ceeEEec-ceeeeEEEEcCHHHHHHHhcC--CCeEEEEeceeeee
Q 042484 6 AIFYSYT-RHINGFAAKLADAVAAEMAKH--PKVVSVFLSKEKKL 47 (620)
Q Consensus 6 ~~~~~y~-~~~~G~s~~~~~~~~~~L~~~--~~V~~v~~~~~~~~ 47 (620)
++.+.|+ .+|+||+++++++.+++|+++ |.|.+||+++.+++
T Consensus 31 ~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 31 TITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp CCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred ceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 6889994 899999999999999999999 88999999998764
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0054 Score=47.07 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=38.2
Q ss_pred cccceeEEecceeeeEEEEcCHHHHHHHhcCCCeEEEEeceeeee
Q 042484 3 LAHAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKL 47 (620)
Q Consensus 3 ~~~~~~~~y~~~~~G~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~ 47 (620)
.-.++.++|. .+++++++++++.++.|+++|+|++|++|...+.
T Consensus 21 ~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~a 64 (65)
T 2z30_B 21 IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVL 64 (65)
T ss_dssp GTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEEE
T ss_pred CCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEEc
Confidence 3467888884 5899999999999999999999999999987653
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.027 Score=48.87 Aligned_cols=51 Identities=22% Similarity=0.392 Sum_probs=43.6
Q ss_pred ceEEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 551 GSITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
...+.+++|+|+|. +..|+.....| ++++|++.++ ++|++..++|+|.+..
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~~~----F~i~P~~g~L-~pg~~~~i~V~F~P~~ 92 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTCRP----FSIEPAIGTL-NVGESMQLEVEFEPQS 92 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECCTT----EEEESSEEEE-CTTCEEEEEEEECCSS
T ss_pred CeEEEEEEEEECCCCCEEEEEecCCC----eEEECCcCEE-CCCCEEEEEEEEEcCC
Confidence 57888999999999 88888776443 6668999999 8999999999999864
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=0.13 Score=54.74 Aligned_cols=65 Identities=23% Similarity=0.209 Sum_probs=52.3
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCc--cc-CCCccccEEEeecCCccee-eec
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGND--HT-TDRHVLPASVITFNDGYYN-LFF 370 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~--~~-~~~~~~p~~~i~~~~g~~l-~~~ 370 (620)
.+++|||+|+.+ |.+..|..+++++||.|+|++++...... +. .....+|.+.|+..+++.| ..+
T Consensus 111 ~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 111 KDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANL 181 (421)
T ss_dssp SCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHH
T ss_pred CCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHh
Confidence 379999999999 78999999999999999999998642111 11 1345789999999999888 777
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.88 E-value=0.2 Score=42.31 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=43.0
Q ss_pred ceEEEEEEEEEcCC-CceEEEEEeC-CCCeEEEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 551 GSITVTRRVKNVGS-PGTYQARVKT-PQGVSVTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~~ty~~~~~~-~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
...+.+++++|.|+ +..|+..... +.+...+++|..-.+ .||++++++|+|.+..
T Consensus 26 ~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~ 82 (112)
T 2e6j_A 26 SAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSII 82 (112)
T ss_dssp CCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCC
T ss_pred CEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCC
Confidence 46777899999999 9999984311 112346778999999 8999999999998854
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=91.01 E-value=0.093 Score=62.60 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCCCCCcEEEEeccccCCCCcCcCC
Q 042484 73 ARYGEDIIIGNLDTGVWRESKSFGD 97 (620)
Q Consensus 73 ~~~G~GV~VgVIDTGId~~Hp~f~~ 97 (620)
.+.|+||+|||+|||||+.+|-|+-
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq~ 56 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLET 56 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred CCCCCccEEEEEeCCCCCCCCccee
Confidence 5789999999999999999999963
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.86 E-value=0.96 Score=40.02 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=41.9
Q ss_pred ceEEEEEEEEEcCC-CceEEEEEeCC----CCeEEEEecceEEEeeCCeEEEEEEEEEE
Q 042484 551 GSITVTRRVKNVGS-PGTYQARVKTP----QGVSVTMAPKSLKFINVGEEKSFKVNIKA 604 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~~ty~~~~~~~----~g~~v~v~p~~l~~~~~g~~~~~~v~~~~ 604 (620)
...+-++||+|.|. +.+|++..... ..--++++|..-++ .||++..++|++..
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYV 100 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECB
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEE
Confidence 35677889999999 99999985421 11136678999999 99999999999985
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.26 Score=52.66 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=55.1
Q ss_pred CCcccccEEEEEe--cc---------chhH----HHHHHHcCCcEEEEecCCCCCCc------c--cCCCccccEEEeec
Q 042484 305 PKKVKGKILVCLN--VR---------SVDE----GLQAALAGAADIVLVNLPEFGND------H--TTDRHVLPASVITF 361 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~---------~~~~----~~~~~~~ga~gvi~~~~~~~~~~------~--~~~~~~~p~~~i~~ 361 (620)
+.+++|||||+.+ |. +..+ ..++.++||.|+|++++...... . ......+|.+.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 4689999999988 43 2333 34689999999999987542211 1 11235789999999
Q ss_pred CCccee-eecccCCCcEEEEeC
Q 042484 362 NDGYYN-LFFTFTRHPVGYIKR 382 (620)
Q Consensus 362 ~~g~~l-~~~~~~~~~~~~i~~ 382 (620)
.+++.| +.+..+...++++..
T Consensus 204 ~da~~L~~~l~~g~~~~v~l~~ 225 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISLEL 225 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEE
Confidence 999999 877766555555543
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=87.65 E-value=2.6 Score=35.92 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=44.1
Q ss_pred eEEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 552 SITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 552 ~~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
...+++.|.|... +.+|.++++...++++. .|..+++ ++|+.+++.|.+....
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence 4678899999999 99999999987776653 3556888 8999999999998864
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=87.57 E-value=0.35 Score=53.96 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=33.8
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCC
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPE 342 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~ 342 (620)
-+++|||+|+.+ |.+..|..++.++||.|+|++++..
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~ 166 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQT 166 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTT
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccc
Confidence 479999999999 8899999999999999999998753
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=84.31 E-value=0.7 Score=52.14 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=33.4
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecC
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNL 340 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~ 340 (620)
..+++|||+|+.+ |.+..|..+++++||.|+|+|++
T Consensus 150 ~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~d 187 (707)
T 3fed_A 150 GINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSD 187 (707)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred CCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcC
Confidence 4579999999999 88999999999999999999986
|
| >3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A | Back alignment and structure |
|---|
Probab=83.01 E-value=3.5 Score=42.60 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=43.7
Q ss_pred ceEEEEEEEEEcCC-CceEEEEEeCCCCeE----EEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 551 GSITVTRRVKNVGS-PGTYQARVKTPQGVS----VTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~~ty~~~~~~~~g~~----v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
...+-++||+|+|. +.+|++......... ++++|..-++ .||++.+++|++....
T Consensus 46 ~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l-~Pge~~~i~l~~~v~~ 105 (366)
T 3qis_A 46 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSK 105 (366)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCT
T ss_pred CeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEE-CCCCEEEEEEEEEECH
Confidence 46777889999999 999999765432222 6788999999 9999999999997653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 620 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 2e-26 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 5e-08 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 0.001 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 7e-08 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 8e-08 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-07 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 3e-07 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-05 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 6e-07 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-04 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 2e-06 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 5e-06 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 0.002 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 1e-05 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 3e-05 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 0.001 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 110 bits (275), Expect = 2e-26
Identities = 62/464 (13%), Positives = 117/464 (25%), Gaps = 82/464 (17%)
Query: 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGP 135
+ I +D+G R N + +
Sbjct: 21 AGNRTICIIDSGYDRSHNDLNA------------------------NNVTGTNNSG---- 52
Query: 136 LNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMG 195
++Y + N HG+H V A K +
Sbjct: 53 -TGNWYQPGNNNAHGTHVAGTIAAIANNEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLV 111
Query: 196 GCYD--CDIIAAFDMAIHDGVDMLSVSLVAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNA 253
D + A + + G + + + H +G++++ + GN G + +
Sbjct: 112 AAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTH-YNNGVLLIAAAGNAGDSSYSYPAS 170
Query: 254 APRQIVVGASTMDRDLSNYVVLGNNKRFKLISER-------AKGLPSDKLFTFIRTLDPK 306
+ V A + D + + + E +G +D
Sbjct: 171 YDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNG 230
Query: 307 KVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEF---------------GNDHTTDR 351
V L + A+ GA VN F GN ++
Sbjct: 231 VVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYP 290
Query: 352 HVLPASVITFNDGYYNLFFTFTRHP------VGYIKRPTTEFGAKPAPYMAALSSKGPIH 405
+ + ++ + P + T
Sbjct: 291 EINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQ 350
Query: 406 ITPEILKRRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQ 465
T + + +GTSM+ P++SG+A L HP+ S + V++A+ TA
Sbjct: 351 STTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVA-- 408
Query: 466 QILDASFTEATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLC 509
G G + A YL+ C
Sbjct: 409 ---------GRDNQTGYGMINAVAAK-----------AYLDESC 432
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 53.5 bits (127), Expect = 5e-08
Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 27/193 (13%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
++ GTSM+ P+++G+ + P+ P ++ + TA +
Sbjct: 374 YDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNG-----------NGW 422
Query: 477 PFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKNAIIL 536
G G V+ + A+ L V ++ V+ + ++
Sbjct: 423 DHDTGYGLVKLDAALQGPLPTQGGVEEF-----------QVVVTDAKGNFGVPTVFVSMM 471
Query: 537 VNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTMAPKSLKFINVGEEK 596
+ G GTY V P +AP + I G
Sbjct: 472 RDNGSCYYAKTGPDGIARFPHI-----DSGTYDIFVGGPDHWDRALAPYDGESIPGGYAI 526
Query: 597 SFKVNIKAKNASV 609
+ ++ + + + V
Sbjct: 527 ALRMAEERQASFV 539
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 39.3 bits (90), Expect = 0.001
Identities = 34/223 (15%), Positives = 56/223 (25%), Gaps = 42/223 (18%)
Query: 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYF 125
+WE+A G +II+ +DTGV +G F
Sbjct: 144 TQQLWEEAS-GTNIIVAVVDTGVDGTHPDL------------EGQVIAGYRPAFDEE--- 187
Query: 126 NQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKA-RV 184
+ + G+H +A G A G +
Sbjct: 188 -----------LPAGTDSSYGGSAGTHV-----AGTIAAKKDGKGIVGVAPGAKIMPIVI 231
Query: 185 AGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSLVAIGSFHAVQ---------HGIV 235
A G G D + A A G +++ S G + ++ ++
Sbjct: 232 FDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVVM 291
Query: 236 VVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNN 278
VV + N P I V A +
Sbjct: 292 VVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGGTFRVAGFSSR 334
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.5 bits (124), Expect = 7e-08
Identities = 16/80 (20%), Positives = 28/80 (35%)
Query: 413 RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASF 472
R+ S +GTS S P +GI L + + + +Q ++ T+
Sbjct: 249 RQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGV 308
Query: 473 TEATPFSYGAGHVQPNLAMD 492
SYG G + +
Sbjct: 309 GRKVSHSYGYGLLDAGAMVA 328
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 51.8 bits (122), Expect = 8e-08
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
+N+ISGTSM+ P++SG+A +P S ++S + A + D K
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY----GAAIGD 298
Query: 477 PFSYGAGHVQ 486
++ G G +
Sbjct: 299 DYASGFGFAR 308
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 50.7 bits (120), Expect = 2e-07
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
+ + +GTSM+ P+++G A L HP+W+ V+S++ T T +
Sbjct: 214 YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD-------------- 259
Query: 477 PFSYGAGHVQPNLAMD 492
F YG G + A
Sbjct: 260 SFYYGKGLINVQAAAQ 275
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 49.9 bits (118), Expect = 3e-07
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 14/75 (18%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
+ S++GTSM+ P+++G A L K +P WS +++ + TAT+ +
Sbjct: 208 YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNL----------- 256
Query: 477 PFSYGAGHVQPNLAM 491
YG+G V A
Sbjct: 257 ---YGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 44.9 bits (105), Expect = 1e-05
Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 52/224 (23%)
Query: 63 RIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCN 122
R+ + + G + + LDTG+ G +P +
Sbjct: 10 RVQAPAAHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEP--------------- 54
Query: 123 RYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKA 182
S +D NGHG+H AG G +P A
Sbjct: 55 -------------------STQDGNGHGTHV---------AGTIAALNNSIGVLGVAPSA 86
Query: 183 RVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSLVAIGSFHA--------VQHGI 234
+ K G I + A ++G+ + ++SL + G+
Sbjct: 87 ELYAVKVL-GASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSRGV 145
Query: 235 VVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNN 278
+VV + GN G ++ + VGA+ + + +++ G
Sbjct: 146 LVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAG 189
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 49.2 bits (116), Expect = 6e-07
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 419 SISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPF 478
+++GTSM+ P+++G A L HP+ S + V++ + +TAT + F
Sbjct: 215 TLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGS--------------SF 260
Query: 479 SYGAGHVQPNLA 490
YG G + A
Sbjct: 261 YYGKGLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 35/228 (15%), Positives = 69/228 (30%), Gaps = 55/228 (24%)
Query: 63 RIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCN 122
I + + + G ++ + LDTG+ G A F
Sbjct: 10 LIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGG----------------ASFVAG 53
Query: 123 RYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKA 182
+N D H + + + + G G +P
Sbjct: 54 EAYNTDGNGHGTHVAGTVAALDNTTGV--------------------------LGVAPSV 87
Query: 183 RVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVS--------LVAIGSFHAVQHGI 234
+ K G I++ + A +G+D++++S + +A G+
Sbjct: 88 SLYAVKVLNSS-GSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGV 146
Query: 235 VVVCSDGNEG----LVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNN 278
VVV + GN G + I VGA + + +++ +G
Sbjct: 147 VVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAE 194
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 47.6 bits (111), Expect = 2e-06
Identities = 17/140 (12%), Positives = 39/140 (27%), Gaps = 20/140 (14%)
Query: 362 NDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAAL----SSKGPIHITPEILKRRIPF 417
+ + + PT + KP + + +
Sbjct: 189 RPSFGSYADNINHVAQFSSRGPTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKY 248
Query: 418 NSISGTSMSGPYISGIAGL-----PKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASF 472
+ GTSM+ P ++G K P+ +++A++ A
Sbjct: 249 AYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG----------- 297
Query: 473 TEATPFSYGAGHVQPNLAMD 492
+ G G V + +++
Sbjct: 298 LGYPNGNQGWGRVTLDKSLN 317
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 46.1 bits (108), Expect = 5e-06
Identities = 36/217 (16%), Positives = 57/217 (26%), Gaps = 48/217 (22%)
Query: 70 WEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDY 129
W+ + I +DTGV + D +
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNNHGT--------- 74
Query: 130 AVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKA 189
H + + N G +P R+ +A
Sbjct: 75 -------------------HVAGIAAAETNNA-----------TGIAGMAPNTRILAVRA 104
Query: 190 CWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSLVAIG--------SFHAVQHGIVVVCSDG 241
D G DI A A G +++++SL +A G VVV + G
Sbjct: 105 L-DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVNYAWNKGSVVVAAAG 163
Query: 242 NEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNN 278
N G + I VGA L+++ G
Sbjct: 164 NNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGTW 200
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 38.4 bits (88), Expect = 0.002
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 420 ISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+SGTSM+ P+++G+A L + + ++ AI TA
Sbjct: 222 MSGTSMASPHVAGLAAL--LASQGRNNIEIRQAIEQTAD 258
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 45.1 bits (105), Expect = 1e-05
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 416 PFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNK 463
SISGTSM+ P+++G+A L + +A + I TA D
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLS 262
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.4 bits (103), Expect = 3e-05
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQD-NKKQQILDASFTEA 475
NS GTS + P +G+ L +P+ + VQ + +A + N D++ +
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 476 TPFSYGAGHVQPNLAMD 492
YG G + + ++
Sbjct: 317 YSHRYGFGKIDAHKLIE 333
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 38.9 bits (89), Expect = 0.001
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 15/72 (20%)
Query: 421 SGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSY 480
SGTSM+ P+++G+AGL + S + +++AI TA T +
Sbjct: 222 SGTSMATPHVAGVAGL--LASQGRSASNIRAAIENTADKISG-------------TGTYW 266
Query: 481 GAGHVQPNLAMD 492
G V A+
Sbjct: 267 AKGRVNAYKAVQ 278
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 620 | |||
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.95 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 97.75 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 97.24 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 97.03 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 92.5 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 90.99 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1.1e-49 Score=431.43 Aligned_cols=348 Identities=18% Similarity=0.252 Sum_probs=238.6
Q ss_pred ccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCC
Q 042484 67 NSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDK 146 (620)
Q Consensus 67 ~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~ 146 (620)
..+|. .+|+||+|||||||||++||+|.+. ...+.+ + ....+..++.|+
T Consensus 14 ~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~------------~~~~~~------------~-----~~~~~~~~~~d~ 62 (435)
T d1v6ca_ 14 TVLSD--SQAGNRTICIIDSGYDRSHNDLNAN------------NVTGTN------------N-----SGTGNWYQPGNN 62 (435)
T ss_dssp GGSCC--TTGGGCEEEEEESCCCTTSTTTTTS------------EEEECC------------C-----TTSCCTTCCCSS
T ss_pred chhhh--cCCCCcEEEEEcCCCCCCChhhccC------------eeeeec------------c-----CCCCCCCCCCCC
Confidence 35665 4799999999999999999999753 111110 0 011234457789
Q ss_pred CCChhhhhHhhcccCCCCCceeccCCceeeeecC--CCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh-CCCcEEeecH--
Q 042484 147 NGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSP--KARVAGYKACWDGMGGCYDCDIIAAFDMAIH-DGVDMLSVSL-- 221 (620)
Q Consensus 147 ~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~-~gvdVIn~Sl-- 221 (620)
+||||||||||||+.. +..+.|||| +++|+.+|++... ..+...++++||+++++ .+++|||+||
T Consensus 63 ~gHGThvAgiiag~~~---------~~g~~GvAp~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~a~~~~~~~vin~S~g~ 132 (435)
T d1v6ca_ 63 NAHGTHVAGTIAAIAN---------NEGVVGVMPNQNANIHIVKVFNEA-GWGYSSSLVAAIDTCVNSGGANVVTMSLGG 132 (435)
T ss_dssp CCHHHHHHHHHHCCCS---------SSBCCCSSCSSCSEEEEEECEETT-EECCSSCHHHHHHHHHHTTCCSEEEECCCB
T ss_pred CCcHHHHHHHHhccCC---------CCceEEEecccCceeeeeeccccc-ccchhhhhhhHHHHHhhcccceEEecccCC
Confidence 9999999999999862 245789999 8999999999887 45677789999999996 5999999999
Q ss_pred ------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEEE--eec-------
Q 042484 222 ------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKL--ISE------- 286 (620)
Q Consensus 222 ------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g--~~~------- 286 (620)
...++..+.++|+++|+||||+|+...+.+..++++|+||+++.+.....+...+....+.. ..+
T Consensus 133 ~~~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st~~~g 212 (435)
T d1v6ca_ 133 SGSTTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVG 212 (435)
T ss_dssp SCCBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEECSTT
T ss_pred CCCCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceeeeeecC
Confidence 55666778899999999999999887777777899999999876654322222222111110 000
Q ss_pred --------------cCCCCC-------CCcee-----------eEE------EccCCCcccccEEEEEe-------ccch
Q 042484 287 --------------RAKGLP-------SDKLF-----------TFI------RTLDPKKVKGKILVCLN-------VRSV 321 (620)
Q Consensus 287 --------------~~~~~~-------~~~~~-----------~~~------~~~~~~~~~gkivl~~~-------~~~~ 321 (620)
...... ....+ .+. ..+...++.+++.++.+ ....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (435)
T d1v6ca_ 213 EGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEI 292 (435)
T ss_dssp CEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHH
T ss_pred CCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccCCccccceee
Confidence 000000 00000 000 12234567788888877 2355
Q ss_pred hHHHHHHHcCCcEEEEecCCCCCCcc------cCCCccccEEEeecCCccee-eecccCCCcEEEEeCCceeecCCCCCc
Q 042484 322 DEGLQAALAGAADIVLVNLPEFGNDH------TTDRHVLPASVITFNDGYYN-LFFTFTRHPVGYIKRPTTEFGAKPAPY 394 (620)
Q Consensus 322 ~~~~~~~~~ga~gvi~~~~~~~~~~~------~~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 394 (620)
.........+..+++.+++....... ..+....|.+.+....+..+ ..+... .
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~----~---------------- 352 (435)
T d1v6ca_ 293 NSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----T---------------- 352 (435)
T ss_dssp HHHHHHHHTTCSEEEEECCSSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSE----E----------------
T ss_pred eeceeecccCCcceEEeccCCCCCcCCccccccCCceEEEEEEeccccccccccccCCc----c----------------
Confidence 66677888899999888765421110 11233445555544433333 211110 0
Q ss_pred eeeccCCCCCCCCCceeecCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCC
Q 042484 395 MAALSSKGPIHITPEILKRRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTE 474 (620)
Q Consensus 395 ~a~FSS~GP~~~kPdi~a~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~ 474 (620)
.++.. ....|..|||||||||||||++|||+|+||+|+|+|||++||+||+++. .+
T Consensus 353 --~~~~~-----------~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~-----------~~ 408 (435)
T d1v6ca_ 353 --TVSNQ-----------GNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLS-----------VA 408 (435)
T ss_dssp --EEEEE-----------EEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCS-----------SS
T ss_pred --eecCC-----------CCCCeeEEccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccC-----------CC
Confidence 00000 3567999999999999999999999999999999999999999998763 24
Q ss_pred CCCceecccccCccccCCCceeeecCchhhHHhhhh
Q 042484 475 ATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCA 510 (620)
Q Consensus 475 ~~~~~~GaG~vn~~~A~~~~lv~~~~~~d~~~~~~~ 510 (620)
+++++||+|+||+.+|++ |+...|.
T Consensus 409 ~~~~~~G~G~vn~~~A~~-----------~l~~~~~ 433 (435)
T d1v6ca_ 409 GRDNQTGYGMINAVAAKA-----------YLDESCT 433 (435)
T ss_dssp SCBTTTBTCBCCHHHHHH-----------HHHHCTT
T ss_pred CCCCCcccceecHHHHHH-----------HHHhcCC
Confidence 567899999999999965 7776664
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=1.6e-48 Score=441.76 Aligned_cols=317 Identities=18% Similarity=0.171 Sum_probs=219.4
Q ss_pred ceeEEecceeeeEEEEcCHHHH----HHH--hcCCCeEEEEeceeeeeccC----CCccccCccc-----C---------
Q 042484 6 AIFYSYTRHINGFAAKLADAVA----AEM--AKHPKVVSVFLSKEKKLHTT----HSWEFLGLEQ-----N--------- 61 (620)
Q Consensus 6 ~~~~~y~~~~~G~s~~~~~~~~----~~L--~~~~~V~~v~~~~~~~~~~~----~s~~~~g~~~-----~--------- 61 (620)
++++.+.. ++.+.++++..++ +.+ ..+|+|++|+|+...++... ..+....... .
T Consensus 54 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (671)
T d1r6va_ 54 KVVLELPQ-IKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELS 132 (671)
T ss_dssp EEEEEEGG-GTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTG
T ss_pred EEEEEecc-cceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCcccc
Confidence 44555543 5667777764332 223 35799999999876554321 0011110000 0
Q ss_pred ------CCCCCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCC
Q 042484 62 ------GRIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGP 135 (620)
Q Consensus 62 ------~~~~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~ 135 (620)
..+.+.+.|....+|+||+|||||||||++||+|.+. .+.+... .+.+.
T Consensus 133 ~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~~-------~~~~~~~-----------~~~~~------- 187 (671)
T d1r6va_ 133 NELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQ-------VIAGYRP-----------AFDEE------- 187 (671)
T ss_dssp GGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSGGGTTT-------BCCEEEG-----------GGTEE-------
T ss_pred ccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCChhhcCC-------cccCccc-----------cccCC-------
Confidence 0112334444456899999999999999999999853 1111100 00000
Q ss_pred CCCCCCCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCC-----CCCCCHHHHHHHHHHHH
Q 042484 136 LNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDG-----MGGCYDCDIIAAFDMAI 210 (620)
Q Consensus 136 ~~~~~~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-----~g~~~~~~i~~ai~~a~ 210 (620)
.....++.|..||||||||||||+.. +..+.||||+|+|+++|++.+. .|....+.+++||+||+
T Consensus 188 -~~~~~~~~d~~gHGT~VAGiiaa~~~---------~~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~ 257 (671)
T d1r6va_ 188 -LPAGTDSSYGGSAGTHVAGTIAAKKD---------GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWAT 257 (671)
T ss_dssp -ECTTCBCCTTCSHHHHHHHHHHCCCS---------SSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHH
T ss_pred -CCCCCcCcccCCCCccccceeeeecc---------ccceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHH
Confidence 01123456788999999999998752 3457899999999999999642 14567889999999999
Q ss_pred hCCCcEEeecH--------HHHHHHHHHhcCcEEEEecCCCCCCC-CccCCCCCceEEecccccCCcccceEEeCCCeEE
Q 042484 211 HDGVDMLSVSL--------VAIGSFHAVQHGIVVVCSDGNEGLVD-VTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRF 281 (620)
Q Consensus 211 ~~gvdVIn~Sl--------~~~~~~~a~~~Gv~vV~AAGN~G~~~-~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~ 281 (620)
++|++|||||| +..+...+.++|+++|+||||++.+. ...+...|++|+|||++.+....
T Consensus 258 ~~g~~Vin~S~g~~~~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~~~~----------- 326 (671)
T d1r6va_ 258 DHGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGGTF----------- 326 (671)
T ss_dssp HTTCSEEEECEEBSCCCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETTEE-----------
T ss_pred hCCCcEEecccccccCChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCCCcc-----------
Confidence 99999999999 66677788899999999999998643 23444579999999975332100
Q ss_pred EEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeec
Q 042484 282 KLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITF 361 (620)
Q Consensus 282 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~ 361 (620)
T Consensus 327 -------------------------------------------------------------------------------- 326 (671)
T d1r6va_ 327 -------------------------------------------------------------------------------- 326 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------------------------cC
Q 042484 362 NDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------------------------RR 414 (620)
Q Consensus 362 ~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------------------------~~ 414 (620)
.++.||+|||. |||.| .+
T Consensus 327 --------------------------------~~a~fS~~g~~---~dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~ 371 (671)
T d1r6va_ 327 --------------------------------RVAGFSSRSDG---VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNG 371 (671)
T ss_dssp --------------------------------EECSSSCCCTT---EEEEEECSSEEEECCCTTSTTCCCCCTTCCCSSS
T ss_pred --------------------------------eeeeccCCCCC---ceEEecCCCeEeecCCCCccccccccccccccCC
Confidence 01111111111 01100 35
Q ss_pred CCcEEeccccchhhhhhhhhhhhcccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCCCc
Q 042484 415 IPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDPG 494 (620)
Q Consensus 415 ~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~~~ 494 (620)
+.|..++|||||||||||++|||+|++|+|+++|||++|++||++++.. ..+..||||+||+.+|++..
T Consensus 372 ~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~vna~~Av~~~ 440 (671)
T d1r6va_ 372 GTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAALQGP 440 (671)
T ss_dssp CCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBCCHHHHHHCC
T ss_pred CeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC-----------CCCCCcccChhCHHHHhhCc
Confidence 7899999999999999999999999999999999999999999987532 34578999999999999744
Q ss_pred e
Q 042484 495 L 495 (620)
Q Consensus 495 l 495 (620)
+
T Consensus 441 ~ 441 (671)
T d1r6va_ 441 L 441 (671)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=6.4e-46 Score=378.00 Aligned_cols=244 Identities=24% Similarity=0.287 Sum_probs=191.8
Q ss_pred CCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCC
Q 042484 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSAR 144 (620)
Q Consensus 65 ~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 144 (620)
+++.+|+++.+|+||+|||||||||++||+|.+. ...+.. + ......+.
T Consensus 19 ~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~-------~~~~~~-----------------~-------~~~~~~~~ 67 (280)
T d1dbia_ 19 YTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK-------VIKGYD-----------------F-------VDNDYDPM 67 (280)
T ss_dssp THHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT-------EEEEEE-----------------T-------TTTBSCCC
T ss_pred CHHHHHhccCCCCCeEEEEEccCcCCCChhhcCC-------eeeccc-----------------c-------cCCCCccc
Confidence 3569999999999999999999999999999853 111111 1 01133467
Q ss_pred CCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH---
Q 042484 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--- 221 (620)
Q Consensus 145 D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--- 221 (620)
|..+|||||||+|+|...+ ...+.||||+|+|+.+|+++.. +.+..+++++||++++++|++|||+||
T Consensus 68 d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~-~~~~~~~~~~ai~~a~~~g~~iin~S~g~~ 138 (280)
T d1dbia_ 68 DLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRN-GSGTLSDIADAIIYAADSGAEVINLSLGCD 138 (280)
T ss_dssp CSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTT-SCCCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred cccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCC-CCcCHHHHHHHHHHHHHcCCcEeecccccc
Confidence 8899999999999987532 3558899999999999999877 778999999999999999999999999
Q ss_pred -----HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCce
Q 042484 222 -----VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKL 296 (620)
Q Consensus 222 -----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 296 (620)
...+...+.++|+++|+||||+|......+...+.+|+|++.+.+
T Consensus 139 ~~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 188 (280)
T d1dbia_ 139 CHTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY------------------------------ 188 (280)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT------------------------------
T ss_pred ccchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCC------------------------------
Confidence 555667788999999999999997655566667899999985422
Q ss_pred eeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCc
Q 042484 297 FTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHP 376 (620)
Q Consensus 297 ~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 376 (620)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHH
Q 042484 377 VGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPA 447 (620)
Q Consensus 377 ~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~ 447 (620)
+.++.||++||. +|++| ....|..++|||||||+|||++|||+|. .+++.
T Consensus 189 ----------------~~~a~~S~~g~~---~d~~apg~~i~~~~~~~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~ 247 (280)
T d1dbia_ 189 ----------------DRLASFSNYGTW---VDVVAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLASQ--GRNNI 247 (280)
T ss_dssp ----------------SCBCTTBCCSTT---CCEEEECSSEEEEETTTEEEEECSHHHHHHHHHHHHHHHHHT--TCCHH
T ss_pred ----------------CCcCCcCCCCCc---ccccCCccceeccccCcceeccCCccccchHHHHHHHHHhCC--CcCHH
Confidence 234567777763 34444 5678899999999999999999999995 55899
Q ss_pred HHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 448 AVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 448 ~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
|||++|++||+++.. +...||+|+||+.+||+
T Consensus 248 ~v~~~L~~tA~~~~~-------------~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 248 EIRQAIEQTADKISG-------------TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp HHHHHHHHTSBCCTT-------------BTTTBSSEECCHHHHHT
T ss_pred HHHHHHHHhCcCCCC-------------CCCcCCCCeEcHHHHcC
Confidence 999999999987632 24579999999999985
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=9.1e-46 Score=375.81 Aligned_cols=241 Identities=25% Similarity=0.359 Sum_probs=195.5
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
+..+|+++++|+||+|||||||||++||+|+.. .+.. + ......+.|
T Consensus 13 ~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~~---------~~~~-----------------~-------~~~~~~~~d 59 (274)
T d1r0re_ 13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLNVV---------GGAS-----------------F-------VAGEAYNTD 59 (274)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE---------EEEE-----------------C-------STTCCTTCC
T ss_pred hHHHHHcCCCCCCeEEEEECCCCCCCChhhccc---------CCcc-----------------c-------cCCCCCCCC
Confidence 358999999999999999999999999999521 1110 1 001233567
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---- 221 (620)
..+|||||||||++... ...+.|+||+|+|+.+|++... +.+..++++++++++.+++++|||+||
T Consensus 60 ~~gHGT~vAgii~~~~~---------~~~~~gvap~a~i~~~~~~~~~-~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~ 129 (274)
T d1r0re_ 60 GNGHGTHVAGTVAALDN---------TTGVLGVAPSVSLYAVKVLNSS-GSGSYSGIVSGIEWATTNGMDVINMSLGGAS 129 (274)
T ss_dssp SSSHHHHHHHHHHCCSS---------SSBCCCSSTTSEEEEEECSCTT-SEECHHHHHHHHHHHHHTTCSEEEECEEBSS
T ss_pred ccccccccccccccccc---------cccccccCCCcEEEEEEEeCCC-CCcCHHHHHHHHHHHHhcCCceecccccccc
Confidence 88999999999998763 2447899999999999999887 677889999999999999999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCCCc----cCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCC
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDVT----LQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPS 293 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t----~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 293 (620)
......++.++++++|+||||+|..... .+...+.+|+|||.+.+.
T Consensus 130 ~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~~-------------------------- 183 (274)
T d1r0re_ 130 GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNS-------------------------- 183 (274)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTTS--------------------------
T ss_pred chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCCC--------------------------
Confidence 4556667889999999999999864322 223357899999854322
Q ss_pred CceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccC
Q 042484 294 DKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFT 373 (620)
Q Consensus 294 ~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 373 (620)
T Consensus 184 -------------------------------------------------------------------------------- 183 (274)
T d1r0re_ 184 -------------------------------------------------------------------------------- 183 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCC
Q 042484 374 RHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDW 444 (620)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~ 444 (620)
.++.||++|| ||||+| ..+.|..++|||||||+|||++|||+|++|+|
T Consensus 184 --------------------~~~~~s~~g~---~~di~APG~~i~~~~~~~~~~~~sGTS~AaP~VaG~~All~~~~p~l 240 (274)
T d1r0re_ 184 --------------------NRASFSSVGA---ELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNL 240 (274)
T ss_dssp --------------------CBCTTCCCST---TEEEEEECSSEEEEETTTEEEEECSHHHHHHHHHHHHHHHHHHSTTC
T ss_pred --------------------CcccccCCCC---CEEEEecCCCcccccCCCCeEeecCCchhHHHHHHHHHHHHHHCCCC
Confidence 2346777776 567766 56788999999999999999999999999999
Q ss_pred CHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 445 SPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 445 sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
+++|||++|++||+++. +...||+|+||+.+|++
T Consensus 241 t~~~i~~~L~~tA~~~~--------------~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 241 SASQVRNRLSSTATYLG--------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp CHHHHHHHHHHTCBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred CHHHHHHHHHhhCccCC--------------CCCceEcCeecHHHhcC
Confidence 99999999999998753 34679999999999985
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=2e-45 Score=372.33 Aligned_cols=240 Identities=24% Similarity=0.354 Sum_probs=196.9
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
+..+|+++++|+||+||||||||| +||+|... .+. ++ ......+.|
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~---------~~~-----------------~~-------~~~~~~~~d 58 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR---------GGA-----------------SF-------VPGEPSTQD 58 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE---------EEE-----------------EC-------STTCCSCSC
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCcc---------ccc-----------------cc-------cCCCCCccc
Confidence 459999999999999999999998 89999631 000 01 011234567
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---- 221 (620)
..+|||||||||++... .....|+||+|+|+.+|++... +.+....+.+++++++..++++||+||
T Consensus 59 ~~~HGT~vAgii~~~~~---------~~~~~giap~a~i~~~~v~~~~-~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~ 128 (269)
T d1gcia_ 59 GNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGAS-GSGSVSSIAQGLEWAGNNGMHVANLSLGSPS 128 (269)
T ss_dssp SSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTT-SCBCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred cchhhheecccccccCC---------CccccccCCceEEEEEEEecCC-CCccHHHHHHHHHHHHhcccccccccccccc
Confidence 88999999999998762 3457899999999999999887 678889999999999999999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCcee
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLF 297 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 297 (620)
...+...+.++|+++|+||||+|......+...|++|+||+++.+.
T Consensus 129 ~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~~------------------------------ 178 (269)
T d1gcia_ 129 PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNN------------------------------ 178 (269)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTTS------------------------------
T ss_pred ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccCC------------------------------
Confidence 5556677889999999999999976666666679999999954322
Q ss_pred eEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcE
Q 042484 298 TFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPV 377 (620)
Q Consensus 298 ~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 377 (620)
T Consensus 179 -------------------------------------------------------------------------------- 178 (269)
T d1gcia_ 179 -------------------------------------------------------------------------------- 178 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHH
Q 042484 378 GYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAA 448 (620)
Q Consensus 378 ~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ 448 (620)
.++.||++||. +||.| ....|..++|||||||+|||++|||+|++|+|+++|
T Consensus 179 ----------------~~~~~S~~G~~---~di~Apg~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~ 239 (269)
T d1gcia_ 179 ----------------NRASFSQYGAG---LDIVAPGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQ 239 (269)
T ss_dssp ----------------CBCTTCCCSTT---EEEEEECSSEEEEETTTEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred ----------------CcccccCCCCC---ceEEEeeecceeccCCCceEecCCcchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 23456677663 45555 567899999999999999999999999999999999
Q ss_pred HHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 449 VQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 449 ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
||++|++||.++. +...||+|+||+.+|++
T Consensus 240 i~~~L~~tA~~~g--------------~~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 240 IRNHLKNTATSLG--------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHHHHTSBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred HHHHHHhhCccCC--------------CCCCcccCeEcHHHhcC
Confidence 9999999998763 23468999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=5.1e-45 Score=371.64 Aligned_cols=243 Identities=26% Similarity=0.373 Sum_probs=193.2
Q ss_pred CCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCC
Q 042484 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSAR 144 (620)
Q Consensus 65 ~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 144 (620)
+++.+|+++++|+||+|||||||||++||+|... .+... + +.+.....
T Consensus 12 ~a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~---------~~~~~------------~-----------~~~~~~~~ 59 (281)
T d1to2e_ 12 KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA---------GGASM------------V-----------PSETNPFQ 59 (281)
T ss_dssp THHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE---------EEEEC------------C-----------TTCCCTTC
T ss_pred CcHHHHHCCCCCCCeEEEEECCCCCCCChhhhhc---------CCccc------------c-----------CCCCCCCc
Confidence 3569999999999999999999999999999631 11110 0 00111223
Q ss_pred CCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH---
Q 042484 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--- 221 (620)
Q Consensus 145 D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--- 221 (620)
+..+|||||||||+|... .....||||+|+|+.+|++..+ +....++++++|++++..+++|||+||
T Consensus 60 ~~~~HGT~vAgiiag~~~---------~~~~~giAp~a~l~~~kv~~~~-~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~ 129 (281)
T d1to2e_ 60 DNNSHGTHVAGTVAALNN---------SIGVLGVAPSASLYAVKVLGAD-GSGQYSWIINGIEWAIANNMDVINMSLGGP 129 (281)
T ss_dssp CSSSHHHHHHHHHHCCSS---------SSSBCCSSTTSEEEEEECSCTT-SEECHHHHHHHHHHHHHTTCSEEEECEEBS
T ss_pred CcCCCCceeecccccCCC---------CCCcceeecccEEEEEEEeCCC-CCcCHHHHHHHHHHHHhccccccccccCCC
Confidence 456899999999998752 2457899999999999999877 667889999999999999999999999
Q ss_pred -----HHHHHHHHHhcCcEEEEecCCCCCCCCc----cCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCC
Q 042484 222 -----VAIGSFHAVQHGIVVVCSDGNEGLVDVT----LQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLP 292 (620)
Q Consensus 222 -----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t----~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 292 (620)
+..+...+.++|+++|+||||+|..... .+...+.+|+||+.+.+.
T Consensus 130 ~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~~------------------------- 184 (281)
T d1to2e_ 130 SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSN------------------------- 184 (281)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTTS-------------------------
T ss_pred cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCCC-------------------------
Confidence 6667778889999999999999864322 233468899999965332
Q ss_pred CCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeeccc
Q 042484 293 SDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTF 372 (620)
Q Consensus 293 ~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 372 (620)
T Consensus 185 -------------------------------------------------------------------------------- 184 (281)
T d1to2e_ 185 -------------------------------------------------------------------------------- 184 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCC
Q 042484 373 TRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPD 443 (620)
Q Consensus 373 ~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~ 443 (620)
.++.||++||. +|+.| +++.|..++|||||||+|||++|||+|++|+
T Consensus 185 ---------------------~~~~~S~~G~~---~d~~apG~~i~s~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~ 240 (281)
T d1to2e_ 185 ---------------------QRASFSSVGPE---LDVMAPGVSIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPN 240 (281)
T ss_dssp ---------------------CBCTTCCCSTT---CCEEEECSSEEEEETTTEEEEECBHHHHHHHHHHHHHHHHHHSTT
T ss_pred ---------------------CCCcccCCCCC---ccccCCCCCceeecCCCeeEcccCcchhHHHHHHHHHHHHHHCCC
Confidence 23345666653 34443 5677899999999999999999999999999
Q ss_pred CCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 444 WSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 444 ~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
|+++|||++|++||+++. +...||+|+||+.+|++
T Consensus 241 lt~~~i~~~L~~tA~~~~--------------~~~~~G~G~ld~~~A~~ 275 (281)
T d1to2e_ 241 WTNTQVRSSLENTTTKLG--------------DSFYYGKGLINVQAAAQ 275 (281)
T ss_dssp CCHHHHHHHHHTTCBCCS--------------CHHHHTTCBCCHHHHTS
T ss_pred CCHHHHHHHHHhhCccCC--------------CCCCcccCcccHHHHHh
Confidence 999999999999998763 24579999999999998
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=8.5e-45 Score=369.60 Aligned_cols=242 Identities=24% Similarity=0.316 Sum_probs=197.7
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
++++|+.+ +|+||+|||||||||++||+|.+. ...+. ++ ......+.|
T Consensus 20 a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~------------~~~~~------------~~-------~~~~~~~~d 67 (279)
T d1thma_ 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK------------VVGGW------------DF-------VDNDSTPQN 67 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT------------EEEEE------------ET-------TTTBSCCCC
T ss_pred HHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC------------eeccc------------cc-------cccCccccc
Confidence 56899987 899999999999999999999753 11000 01 012345678
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---- 221 (620)
..+|||||||+|++...+ ...+.||||+|+|+.+|++... +.+..++++++|+++++.+++++|+||
T Consensus 68 ~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~-~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~ 138 (279)
T d1thma_ 68 GNGHGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDNS-GSGTWTAVANGITYAADQGAKVISLSLGGTV 138 (279)
T ss_dssp SSSHHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTT-SCCCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred ccccccccceeeeeccCC--------CccccccCCcceEEEEEEEecC-CCCcHHHHHHHHHHHhhcCCceeccccCccc
Confidence 899999999999988633 3558899999999999999887 678999999999999999999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCcee
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLF 297 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 297 (620)
...+...+.++|+++|+|+||+|..........+.+|+|||++.+
T Consensus 139 ~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~------------------------------- 187 (279)
T d1thma_ 139 GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------------------------------- 187 (279)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-------------------------------
T ss_pred cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC-------------------------------
Confidence 566667788999999999999997766666677999999985422
Q ss_pred eEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcE
Q 042484 298 TFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPV 377 (620)
Q Consensus 298 ~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 377 (620)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHH
Q 042484 378 GYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAA 448 (620)
Q Consensus 378 ~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ 448 (620)
+.++.||++||+ +||.| +++.|..++|||||||||||++|||+|.+| ++.+
T Consensus 188 ---------------~~~~~~S~~G~~---~di~Apg~~i~~~~~~~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~ 247 (279)
T d1thma_ 188 ---------------DNKSSFSTYGSW---VDVAAPGSSIYSTYPTSTYASLSGTSMATPHVAGVAGLLASQGR--SASN 247 (279)
T ss_dssp ---------------SCBCTTCCCCTT---CCEEEECSSEEEEETTTEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHH
T ss_pred ---------------CCCccccCCCce---EEEeeeeeccccccCcccccccCCcchhhHHHHHHHHHHhcCCc--CHHH
Confidence 224567777764 35554 667899999999999999999999999766 7899
Q ss_pred HHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 449 VQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 449 ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
||++|++||+++. .....||+|+||+.+|++
T Consensus 248 i~~~L~~tA~~~~-------------g~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 248 IRAAIENTADKIS-------------GTGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp HHHHHHHTCBCCT-------------TBTTTBSSEECCHHHHHH
T ss_pred HHHHHHhhCccCC-------------CCCCcceeeeEcHHHhhC
Confidence 9999999998763 234579999999999975
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=8.8e-41 Score=344.35 Aligned_cols=268 Identities=26% Similarity=0.305 Sum_probs=194.9
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
++.+|..+++|+||+|||||||||++||+|.+. .+.+.. |. +..........|
T Consensus 15 ~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~-------~~~~~~-------------~~-------~~~~~~~~~~~d 67 (309)
T d2ixta1 15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-------VEQCKD-------------FT-------GATTPINNSCTD 67 (309)
T ss_dssp TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-------EEEEEE-------------SS-------SSSSCEETCCCC
T ss_pred ChhhhccCCCCCCeEEEEEccCCCCCChhHhcc-------cccccc-------------cc-------CCCCCCCCCccc
Confidence 458999999999999999999999999999853 111110 00 000111234567
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCC-----CcEEeec
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDG-----VDMLSVS 220 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~g-----vdVIn~S 220 (620)
..+|||||||||+|.... +...+.||||+|+|+.+|++... +.+..++++++++++++.+ ..++|+|
T Consensus 68 ~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~s 139 (309)
T d2ixta1 68 RNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDS-GSGYSDDIAAAIRHAADQATATGTKTIISMS 139 (309)
T ss_dssp SSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTT-SCCCHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred cccccccccccccccccc-------cchhhhhhhhhccceeeeeecCC-CCccccccccccccccccccccccccccccc
Confidence 889999999999987633 23457899999999999999887 6788899999999888753 4689999
Q ss_pred H--------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCC--CCceEEecccccCCcccceEEeCCCeEEEEeeccCCC
Q 042484 221 L--------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNA--APRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKG 290 (620)
Q Consensus 221 l--------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~--ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 290 (620)
+ ...+...+.++|+++|+||||++........| .+.+++|++............
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~~~---------------- 203 (309)
T d2ixta1 140 LGSSANNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYRV---------------- 203 (309)
T ss_dssp CCBSSCCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEEEE----------------
T ss_pred ccccccccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccccc----------------
Confidence 9 45566678899999999999999766655554 477888877532211000000
Q ss_pred CCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeec
Q 042484 291 LPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFF 370 (620)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 370 (620)
T Consensus 204 -------------------------------------------------------------------------------- 203 (309)
T d2ixta1 204 -------------------------------------------------------------------------------- 203 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceee---------cCCCcEEeccccchhhhhhhhhhhhc
Q 042484 371 TFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPK 438 (620)
Q Consensus 371 ~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~ 438 (620)
........++++|+. ..++||.| ....|..++|||||||+|||++|||+
T Consensus 204 -------------------~~~~~~~~~~~~~~~~~~~~~vdi~apG~~~~s~~~~~~~~~~sGTS~AaP~VaG~~Ali~ 264 (309)
T d2ixta1 204 -------------------ADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGGYNTISGTSMATPHVSGLAAKIW 264 (309)
T ss_dssp -------------------CTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEEECTTSSEEEECSHHHHHHHHHHHHHHHH
T ss_pred -------------------cccccccccccccccccCCCcceeecCCCceeeecCCCcceeecCccchhHHHHHHHHHHH
Confidence 000112234555554 35677776 55689999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCc
Q 042484 439 ILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQP 487 (620)
Q Consensus 439 ~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~ 487 (620)
|++|+|+++|||++|++||++++..+.. .....+++.+|+|++|+
T Consensus 265 ~~~p~lt~~~v~~~L~~tA~~~~~~~~~----g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 265 AENPSLSNTQLRSNLQERAKSVDIKGGY----GAAIGDDYASGFGFARV 309 (309)
T ss_dssp HHSTTCCHHHHHHHHHHHHHTSCCCBST----TCCSSSBTTTBTCBCCC
T ss_pred HHCCCCCHHHHHHHHHhhCccCCCCCCc----CCccCCCcccCCCEecC
Confidence 9999999999999999999987654321 12344677889999874
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=3.9e-39 Score=333.20 Aligned_cols=262 Identities=23% Similarity=0.288 Sum_probs=187.8
Q ss_pred cccccc-CCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 67 NSIWEK-ARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 67 ~~~~~~-~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
+.+|.. |+||+||+|||||||||+.||+|.... .|.++.. ..+. .....++.|
T Consensus 11 ~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~~~~~~--------------~~~~------~~~~~~~~d 64 (318)
T d1wmda2 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AFRGKIT--------------ALYA------LGRTNNAND 64 (318)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TTTTCEE--------------EEEE------TTTTTCCCC
T ss_pred hhHHHccCccccCeEEEEEcCCcCCCCcccccCc------ccCCcEE--------------eecC------CCCCCCCCC
Confidence 377875 999999999999999999999997421 1111111 0010 011234567
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCC--CCCHHHHHHHHHHHHhCCCcEEeecH--
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMG--GCYDCDIIAAFDMAIHDGVDMLSVSL-- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~~i~~ai~~a~~~gvdVIn~Sl-- 221 (620)
..||||||||||+|+. ....||||+|+|+.+|++... + ......+..+++++...+++|+|+||
T Consensus 65 ~~gHGT~vAgiiag~~-----------~~~~GvAp~a~l~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~ 132 (318)
T d1wmda2 65 TNGHGTHVAGSVLGNG-----------STNKGMAPQANLVFQSIMDSG-GGLGGLPSNLQTLFSQAYSAGARIHTNSWGA 132 (318)
T ss_dssp SSSHHHHHHHHHHCCS-----------SSSCCSSTTSEEEEEECCCTT-SSCTTSCSSHHHHHHHHHHTTCSEEEECCCB
T ss_pred CCCCCccceeeccccc-----------cccchhhhcccceeeeeeeec-ccccccchhhHHHHHHHHhcCCceeeccccc
Confidence 8999999999999874 225799999999999999876 3 23445678899999999999999999
Q ss_pred ---------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCC--CCceEEecccccCCcccceEEeCCCeEEEEeeccCCC
Q 042484 222 ---------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNA--APRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKG 290 (620)
Q Consensus 222 ---------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~--ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 290 (620)
.......+.++++++|+|+||.|........+ .+.++++.+..........
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------ 194 (318)
T d1wmda2 133 AVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGS------------------ 194 (318)
T ss_dssp CCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGCG------------------
T ss_pred ccccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccccc------------------
Confidence 34444556789999999999999766655443 4667777664322110000
Q ss_pred CCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeec
Q 042484 291 LPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFF 370 (620)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 370 (620)
T Consensus 195 -------------------------------------------------------------------------------- 194 (318)
T d1wmda2 195 -------------------------------------------------------------------------------- 194 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceee---------------------cCCCcEEeccccch
Q 042484 371 TFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK---------------------RRIPFNSISGTSMS 426 (620)
Q Consensus 371 ~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a---------------------~~~~y~~~sGTSMA 426 (620)
.......+..||.+||. ..||++.+ ....|..++|||||
T Consensus 195 -----------------~~~~~~~~~~~s~~G~~~~~~~~~~~~a~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~GTS~A 257 (318)
T d1wmda2 195 -----------------YADNINHVAQFSSRGPTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMA 257 (318)
T ss_dssp -----------------GGSCTTSBCTTSCCCCCTTSCCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHH
T ss_pred -----------------ccccccccccccccCCCcCCCcccceeecCceEEeccccccccCccccCCCcceeeccCcchh
Confidence 00001223345555553 34555555 23567889999999
Q ss_pred hhhhhhhhhhhcccCC-----CCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 427 GPYISGIAGLPKILHP-----DWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 427 aP~VAG~aALl~~~~P-----~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
||||||++|||+|++| .|+|.+||++|++||+++.. +.+...||||+||+.+||+
T Consensus 258 aP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~-----------~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 258 TPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-----------GYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-----------CSSCTTTTTCBCCHHHHHT
T ss_pred hHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC-----------CCCCCCeeeceecHHHHhC
Confidence 9999999999999654 68999999999999987642 3456689999999999987
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.5e-39 Score=334.22 Aligned_cols=278 Identities=17% Similarity=0.192 Sum_probs=181.4
Q ss_pred CCCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCC
Q 042484 64 IPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSA 143 (620)
Q Consensus 64 ~~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 143 (620)
++++.+|+.+.+|+||+|||||||||++||+|.+.- ..+.. +...+ ...........
T Consensus 24 in~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~------------~~~~~-------~~~~~----~~~~~~~~~~~ 80 (334)
T d1p8ja2 24 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY------------DPGAS-------FDVND----QDPDPQPRYTQ 80 (334)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB------------CGGGC-------EETTT----TBSCCCCCCCT
T ss_pred CCHHHHHhcCCCCCCeEEEEEccCCCCCChhHhhcc------------ccCCC-------ccccC----CCCcccccccc
Confidence 356799999999999999999999999999997531 00000 00000 00111123345
Q ss_pred CCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh-CCCcEEeecH-
Q 042484 144 RDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH-DGVDMLSVSL- 221 (620)
Q Consensus 144 ~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~-~gvdVIn~Sl- 221 (620)
.|..+|||||||||+|...+ .....|+||+++|+.+|+.... ....+.++.++++ .+++++|+||
T Consensus 81 ~~~~gHGT~vAgiia~~~~n--------~~~~~g~a~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~n~S~g 147 (334)
T d1p8ja2 81 MNDNRHGTRCAGEVAAVANN--------GVCGVGVAYNARIGGVRMLDGE-----VTDAVEARSLGLNPNHIHIYSASWG 147 (334)
T ss_dssp TCTTCHHHHHHHHHHCCSSS--------SSSCCCTTTTSEEEEEECSSSC-----CCHHHHHHHHTSCTTTCCEEEECCB
T ss_pred ccCccchhhhhhhhhhcccc--------ccccccccccccccchhhcccc-----ccchHHHHHHHhhhcCCcEEeCCCC
Confidence 57889999999999988643 2346799999999999987543 2345567777665 6899999999
Q ss_pred -------------------HHHHHHHHHhcCcEEEEecCCCCCCCCccCC----CCCceEEecccccCCcccceEEeCCC
Q 042484 222 -------------------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQN----AAPRQIVVGASTMDRDLSNYVVLGNN 278 (620)
Q Consensus 222 -------------------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~----~ap~vitVga~~~~~~~~~~~~~g~~ 278 (620)
.......+..+|+++|+||||++........ ..+.+++|++...+.........+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~s~~~~~ 227 (334)
T d1p8ja2 148 PEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSS 227 (334)
T ss_dssp SCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTTSCCCTTCCBCTT
T ss_pred CCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccccCCceeeecccCCc
Confidence 1222334557899999999998754332222 23567778776544332111111000
Q ss_pred eEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEE
Q 042484 279 KRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASV 358 (620)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~ 358 (620)
..
T Consensus 228 ~~------------------------------------------------------------------------------ 229 (334)
T d1p8ja2 228 TL------------------------------------------------------------------------------ 229 (334)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred eecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee--cCCCcEEeccccchhhhhhhhhhh
Q 042484 359 ITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK--RRIPFNSISGTSMSGPYISGIAGL 436 (620)
Q Consensus 359 i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a--~~~~y~~~sGTSMAaP~VAG~aAL 436 (620)
...|+.-++. ..+.+.. ....|..++|||||||||||++||
T Consensus 230 ------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aAL 272 (334)
T d1p8ja2 230 ------------------------------------ATTYSSGNQN-EKQIVTTDLRQKCTESHTGTSASAPLAAGIIAL 272 (334)
T ss_dssp ------------------------------------EEEECCCSTT-SCCEEEEETTTEEEEEECSHHHHHHHHHHHHHH
T ss_pred ------------------------------------cccccccccc-cccccccccCCccccCCCCccccchHHHHHHHH
Confidence 0000000000 0000000 245688899999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 437 PKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 437 l~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
|+|++|+|+++|||++|++||.+.......+............||+|+||+.+||+
T Consensus 273 l~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 273 TLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp HHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHhCcccCCCCccccccCCCcccCCCCcceEeCHHHHHH
Confidence 99999999999999999999998765443332222222334578999999999987
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=8.3e-39 Score=325.13 Aligned_cols=222 Identities=27% Similarity=0.338 Sum_probs=173.3
Q ss_pred cCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChh
Q 042484 72 KARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGS 151 (620)
Q Consensus 72 ~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 151 (620)
...+|+||+|||||||||++||+|.+. .. ....+ ...+.|..||||
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~------------~~------------~~~~~----------~~~~~d~~gHGT 71 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR------------AQ------------MVKTY----------YYSSRDGNGHGT 71 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC------------EE------------EEEES----------SSCSSCSSSHHH
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC------------ce------------eccCC----------CCCcccccCccc
Confidence 455899999999999999999999753 10 00010 223567889999
Q ss_pred hhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCC-------CcEEeecH---
Q 042484 152 HTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDG-------VDMLSVSL--- 221 (620)
Q Consensus 152 HVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~g-------vdVIn~Sl--- 221 (620)
||||||+|.. .|+||+|+|+.+|++... .....+.+..+++++.... ++|+|+||
T Consensus 72 ~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~ 136 (279)
T d2pwaa1 72 HCAGTVGSRT--------------YGVAKKTQLFGVKVLDDN-GSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG 136 (279)
T ss_dssp HHHHHHHCTT--------------TCSSTTCEEEEEECSCTT-SCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE
T ss_pred cccccccccc--------------cccCCCccccceeeecCC-cccccccccchhheecccccccccccccceeccCCCc
Confidence 9999999753 599999999999999877 5678889999999887643 45999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCCCc-cCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCce
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDVT-LQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKL 296 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t-~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 296 (620)
+..+...+.++|+++|+|+||++..... .+...|.+|+|||++.+
T Consensus 137 ~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~------------------------------ 186 (279)
T d2pwaa1 137 YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY------------------------------ 186 (279)
T ss_dssp CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT------------------------------
T ss_pred cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEeec------------------------------
Confidence 6667777889999999999999865433 33446889999985422
Q ss_pred eeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCc
Q 042484 297 FTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHP 376 (620)
Q Consensus 297 ~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 376 (620)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d2pwaa1 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHH
Q 042484 377 VGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPA 447 (620)
Q Consensus 377 ~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~ 447 (620)
+.++.||++||. +||+| +++.|..++|||||||+|||++|||+|++|+++++
T Consensus 187 ----------------g~~~~~S~~G~~---~dv~APG~~i~s~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~ 247 (279)
T d2pwaa1 187 ----------------DRRSSFSNYGSV---LDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAAS 247 (279)
T ss_dssp ----------------SBBCTTCCBSTT---CCEEEECSSEEEEETTTEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred ----------------CCCccccCCCCc---cccccccccccccccCCcccCCCcchhHHHHHHHHHHHHHHhCCCChHH
Confidence 224567777774 45555 56789999999999999999999999999999988
Q ss_pred HHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCc
Q 042484 448 AVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQP 487 (620)
Q Consensus 448 ~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~ 487 (620)
++|. |++||++. .....|+|++|.
T Consensus 248 ~~~~-ll~ta~~~---------------~~~~~g~g~~n~ 271 (279)
T d2pwaa1 248 ACRY-IADTANKG---------------DLSNIPFGTVNL 271 (279)
T ss_dssp HHHH-HHHHSEES---------------CCBSCCTTSCCE
T ss_pred HHHH-HHHhCcCC---------------CCCCCCCCChhh
Confidence 8775 67788653 234678899886
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-38 Score=329.43 Aligned_cols=277 Identities=17% Similarity=0.144 Sum_probs=182.6
Q ss_pred CCCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCC
Q 042484 64 IPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSA 143 (620)
Q Consensus 64 ~~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 143 (620)
+++..+|.++++|+||+|||||||||++||+|.+.-. ..... .|.+. .......
T Consensus 33 in~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~-------~~~~~-----------~~~~~--------~~~~~~~ 86 (339)
T d2id4a2 33 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------AEGSW-----------DFNDN--------TNLPKPR 86 (339)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------GGGCE-----------ETTTT--------BSCCCCC
T ss_pred cCHHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc-------ccccc-----------ccccC--------CCccCCC
Confidence 4567999999999999999999999999999986310 00000 00000 0112334
Q ss_pred CCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH--
Q 042484 144 RDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL-- 221 (620)
Q Consensus 144 ~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl-- 221 (620)
.++.+|||||||+|+|.... .....||||+|+|+.+|+... ....+++..++.+++.. .+|+|+|+
T Consensus 87 ~~~~~HGT~vag~iaa~~~~--------~~~~~Gvap~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~v~~~s~g~ 154 (339)
T d2id4a2 87 LSDDYHGTRCAGEIAAKKGN--------NFCGVGVGYNAKISGIRILSG---DITTEDEAASLIYGLDV-NDIYSCSWGP 154 (339)
T ss_dssp STTTTHHHHHHHHHHCCSSS--------SSSCCCTTTTSEEEEEECTTS---CCCHHHHHHHTTTTTTT-CSEEEECEES
T ss_pred cccccccceeeecccccccc--------cccccccccccccceEEEeec---cccchHHHHHHHHHHhh-CCEEeccCCC
Confidence 56789999999999987533 244789999999999998763 37788888888887765 58999998
Q ss_pred ------------------HHHHHHHHHhcCcEEEEecCCCCCCCCccCC----CCCceEEecccccCCcccceEEeCCCe
Q 042484 222 ------------------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQN----AAPRQIVVGASTMDRDLSNYVVLGNNK 279 (620)
Q Consensus 222 ------------------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~----~ap~vitVga~~~~~~~~~~~~~g~~~ 279 (620)
.......+..+|+++|+||||++........ ..+.+++|++++...........+...
T Consensus 155 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~ 234 (339)
T d2id4a2 155 ADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAV 234 (339)
T ss_dssp CCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTTSCCCTTCCCCTTE
T ss_pred CCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccccccccccccccccCcc
Confidence 1223344557999999999998854332221 235677777654332210000000000
Q ss_pred EEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEe
Q 042484 280 RFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVI 359 (620)
Q Consensus 280 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i 359 (620)
. ....
T Consensus 235 ~-------------------------------------------------------~~~~-------------------- 239 (339)
T d2id4a2 235 M-------------------------------------------------------AVTY-------------------- 239 (339)
T ss_dssp E-------------------------------------------------------EEEE--------------------
T ss_pred c-------------------------------------------------------eeee--------------------
Confidence 0 0000
Q ss_pred ecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceeecCCCcEEeccccchhhhhhhhhhhhcc
Q 042484 360 TFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILKRRIPFNSISGTSMSGPYISGIAGLPKI 439 (620)
Q Consensus 360 ~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a~~~~y~~~sGTSMAaP~VAG~aALl~~ 439 (620)
....+..+ ..-.. .+..|..++|||||||||||++|||+|
T Consensus 240 ~~~~g~~~----------------------------~s~~~------------~~~~~~~~sGTS~AtP~vaG~aALv~~ 279 (339)
T d2id4a2 240 SSGSGEYI----------------------------HSSDI------------NGRCSNSHGGTSAAAPLAAGVYTLLLE 279 (339)
T ss_dssp CSBTTBCE----------------------------EEECS------------TTCEEEEECSHHHHHHHHHHHHHHHHH
T ss_pred eecccccc----------------------------ceecc------------CCCccccCCCCcchHHHHHHHHHHHHH
Confidence 00000000 00000 245688899999999999999999999
Q ss_pred cCCCCCHHHHHHHHHcccccCCCCccee-ccCCCCCCCCceecccccCccccCCC
Q 042484 440 LHPDWSPAAVQSAIMTTATTQDNKKQQI-LDASFTEATPFSYGAGHVQPNLAMDP 493 (620)
Q Consensus 440 ~~P~~sp~~ik~~L~~TA~~~~~~~~~~-~~~~~~~~~~~~~GaG~vn~~~A~~~ 493 (620)
++|+|+++|||.+|++||..++....+. .+....+.....||+|+||+.+||+.
T Consensus 280 ~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 280 ANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp HCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCcCCCccchhhCHHHHHHH
Confidence 9999999999999999999876543211 11112233456699999999999983
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.95 E-value=7.5e-31 Score=274.45 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=99.6
Q ss_pred ccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCCh
Q 042484 71 EKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHG 150 (620)
Q Consensus 71 ~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHG 150 (620)
.++++|+||+|||||||||++||+|.+. |+. .++ +.....+.|..+|+
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~-----------------~~~-------~~~~~~~~~~~g~~ 65 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FAS-----------------LGV-------SAPQVVSVSVDGAT 65 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH-----------------TTC-------CCCCEEEEESTTCC
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh-----------------cCC-------CCCCCceeCCCCCC
Confidence 3688999999999999999999999731 000 000 00011223456788
Q ss_pred hhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHH---hCCCcEEeecH------
Q 042484 151 SHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAI---HDGVDMLSVSL------ 221 (620)
Q Consensus 151 THVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~---~~gvdVIn~Sl------ 221 (620)
|||++++++...+. ..+...+.||||+|+|+.+|+.... ...+.++++++ +.+++|||+||
T Consensus 66 ~~~~g~~~~~~~~~----~~d~~~~~GvAp~A~i~~~~~~~~~------~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~ 135 (357)
T d1t1ga_ 66 NQPTGDPNGPDGEV----ELDIEVAGALAPGAKIAVYFAPNTD------AGFLNAITTAVHDPTHKPSIVSISWGGPEDS 135 (357)
T ss_dssp CCCCSCTTSTHHHH----HHHHHHHHHHSTTSEEEEEECCSSH------HHHHHHHHHHHHCTTTCCSEEEECCCEEGGG
T ss_pred CCCCCccccccccc----cCCcccceeecccCeEEEEecccCC------CchHHHHHHHHHhhhcCCeEEecccccCcCc
Confidence 88888776543211 0012347899999999999987543 33445555554 56899999999
Q ss_pred --------HHHHHHHHHhcCcEEEEecCCCCCCCCc--------cCCCCCceEEecccc
Q 042484 222 --------VAIGSFHAVQHGIVVVCSDGNEGLVDVT--------LQNAAPRQIVVGAST 264 (620)
Q Consensus 222 --------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t--------~~~~ap~vitVga~~ 264 (620)
+......+..+|+++|+++||+|..... .....+++++|++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 194 (357)
T d1t1ga_ 136 WAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTR 194 (357)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEE
T ss_pred cccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeec
Confidence 3344456678999999999999843222 112346777777654
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=6e-28 Score=254.27 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=108.3
Q ss_pred CCCCCCcEEEEeccccCCC-CcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChh
Q 042484 73 ARYGEDIIIGNLDTGVWRE-SKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGS 151 (620)
Q Consensus 73 ~~~G~GV~VgVIDTGId~~-Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 151 (620)
..+|+||+|||||+|.++. |+||.. |...+.. ............+..+|||
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~---------------------------f~~~~~~-~~~~~~~~~~~~~~~~~~~ 72 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQ---------------------------FTSANGL-ASVNTQTIQTGSSNGDYSD 72 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHH---------------------------HHHHTTC-CCCCEEEEECSCTTSCCCB
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHH---------------------------HHHhcCC-CCCCCCeecCCCCCCCCCC
Confidence 4589999999999998764 667641 0000000 0000000112234668999
Q ss_pred hhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh-CCCcEEeecH---------
Q 042484 152 HTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH-DGVDMLSVSL--------- 221 (620)
Q Consensus 152 HVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~-~gvdVIn~Sl--------- 221 (620)
|+++++++.. ....+.||||+|+|+++|++.+. +....++++++|++|++ .+++|||+||
T Consensus 73 ~~~~~~e~~l---------d~~~~~gvAp~a~~~~~~~~~~~-~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~ 142 (369)
T d1ga6a_ 73 DQQGQGEWDL---------DSQSIVGSAGGAVQQLLFYMADQ-SASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANA 142 (369)
T ss_dssp CHHHHHHHHH---------HHHHHHHHTTSCEEEEEEEEECT-TSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHH
T ss_pred CCCcceeecc---------ccccccccccCceEEEEEEeCCC-CCcchHHHHHHHHHHHHcCCCceeeccccccccCCCc
Confidence 9999987654 12347899999999999999888 67888999999999996 5799999999
Q ss_pred ------HHHHHHHHHhcCcEEEEecCCCCCCCCc-------------cCCCCCceEEecccc
Q 042484 222 ------VAIGSFHAVQHGIVVVCSDGNEGLVDVT-------------LQNAAPRQIVVGAST 264 (620)
Q Consensus 222 ------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t-------------~~~~ap~vitVga~~ 264 (620)
+..+..++..+|++||+||||+|..... .+...+++++|+++.
T Consensus 143 ~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 143 DGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 3345566778999999999999853221 112347888888754
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=97.75 E-value=2.2e-05 Score=59.83 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=39.2
Q ss_pred ccceeEEecceeeeEEEEcCHHHHHHHhcCCCeEEEEeceeeee
Q 042484 4 AHAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKL 47 (620)
Q Consensus 4 ~~~~~~~y~~~~~G~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~ 47 (620)
-.++.+.|+ +||||+++|++++++.|++.|+|.+|++++..+.
T Consensus 28 gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 28 GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 357899997 6999999999999999999999999999998764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=97.24 E-value=0.00015 Score=55.19 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=34.5
Q ss_pred cceeEEec-ceeeeEEEEcCHHHHHHHhcCCC--eEEEEecee
Q 042484 5 HAIFYSYT-RHINGFAAKLADAVAAEMAKHPK--VVSVFLSKE 44 (620)
Q Consensus 5 ~~~~~~y~-~~~~G~s~~~~~~~~~~L~~~~~--V~~v~~~~~ 44 (620)
.++.+.|. +.|+||+++++++.|+.|+++|+ |.+|++++.
T Consensus 30 ~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~V 72 (72)
T d1v5ib1 30 GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHV 72 (72)
T ss_dssp CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCE
T ss_pred CceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCCC
Confidence 45677887 69999999999999999998665 999999863
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=97.03 E-value=0.00051 Score=56.05 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=56.2
Q ss_pred cCCCeEEeeccCceEEEEEEEEEcCC-C-ceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEccccCCCCeEE
Q 042484 539 FNYPSITVPKLSGSITVTRRVKNVGS-P-GTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKNASVTKDYVF 615 (620)
Q Consensus 539 ln~psi~~~~~~~~~~~~rtv~n~~~-~-~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~ 615 (620)
+..|++++.- +...+++.+|+|.++ . ..-.+.+..|.|=++ +|....| +|||+++++++++.......+.|.+
T Consensus 6 ~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v--~~~~~~L-~pG~s~~~~~~Vt~p~~a~~G~Y~i 80 (103)
T d1w8oa1 6 FTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQV--QGSVEPL-MPGRQAKGQVTITVPAGTTPGRYRV 80 (103)
T ss_dssp EECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEE--EEEECCB-CTTCEEEEEEEEECCTTCCCEEEEE
T ss_pred ccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCccc--cCcceee-CCCCcEEEEEEEECCCCCCCceEEE
Confidence 4557777653 678999999999998 4 445778889999555 5666677 8999999999999976456666655
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.057 Score=48.29 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=33.7
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCC
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPE 342 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~ 342 (620)
.+++|||+|+.+ +.+..|..+|++.||.|+|+|.+..
T Consensus 59 ~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~ 97 (193)
T d1de4c2 59 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQT 97 (193)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTT
T ss_pred cccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCcc
Confidence 578999999999 6899999999999999999998754
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.088 Score=48.51 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=33.5
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCC
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLP 341 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~ 341 (620)
.-+++|||+|+.+ +.+..|..+|++.||+|+|+|++.
T Consensus 76 gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 76 KINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecCh
Confidence 4578999999999 678999999999999999999874
|