Citrus Sinensis ID: 042515


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
MRLKFESRLLIFFTIIFPAISGELPRFREAPAFRNGRECPKATWSALDRRSHNPSIIHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFPYLNFEIYRFDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHKSLFSDS
ccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEccEEEEccHHHHHHccccccEEEEcccccccccccccccccccHHHHcccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccEEEcccHHHcccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHccccccccHcccHHHcccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEEEcHHHHHcccccccEEcccHHHcHcccccccccccccHHHHHHcccccccHEccccEEEEHHHHHHccHHHHHHHHHHHHHccEEEEccccccEEEEEccccccccccHcEcccccccccccccccccccEEEEEEccccccEEEcccccccccHHHcccccccccccccccc
MRLKFESRLLIFFTIIfpaisgelprfreapafrngrecpkatwsaldrrshnpsiiHISMTldstylrgsVAGVFSVLqhatcpenivFHFISTQRQRLELSRTItatfpylnfeiyrfdtnlvkgKISYSIRQALDQPLNYARIYLADllpltvgriiyfdsdlivvDDVAKLWSINlrgrvlgapeychanftnyftskfwsnpvfsgtvkgrrpcyfntgvmvidlrkwregrYTEKLEYWMRVQKKYRIyelgslppflLVFAGDVegvehrwnqhglggdnleglcrnlhpgpvsllhwsgkgkpwlridskkpcpldslwapydlfrhkslfsds
MRLKFESRLLIFFTiifpaisgelpRFREAPAFRNGRECPKAtwsaldrrshnPSIIHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFPYLNFEIYRFDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSKFWSNPVFsgtvkgrrpcyfntgvmvidlrkwregrytEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHKSLFSDS
MRLKFESRLLIFFTIIFPAISGELPRFREAPAFRNGRECPKATWSALDRRSHNPSIIHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFPYLNFEIYRFDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHKSLFSDS
*****ESRLLIFFTIIFPAISGELPRFREAPAFRNGRECPKATWSALDRRSHNPSIIHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFPYLNFEIYRFDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHK******
***KFESRLLIFFTIIFPAISGELPR*****************************IIHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFPYLNFEIYRFDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHK******
MRLKFESRLLIFFTIIFPAISGELPRFREAPAFRNGRECPKATWSALDRRSHNPSIIHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFPYLNFEIYRFDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHKSLFSDS
*RLKFESRLLIFFTIIFPAISGELPRFREAPAFRNGRECPKATWSALDRRSHNPSIIHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFPYLNFEIYRFDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHKSL****
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iiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRLKFESRLLIFFTIIFPAISGELPRFREAPAFRNGRECPKATWSALDRRSHNPSIIHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFPYLNFEIYRFDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHKSLFSDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query342 2.2.26 [Sep-21-2011]
Q0V7R1345 Probable galacturonosyltr yes no 0.932 0.924 0.781 1e-143
Q9M8J2351 Probable galacturonosyltr no no 0.880 0.857 0.659 1e-128
O48684393 Probable galacturonosyltr no no 0.912 0.793 0.614 1e-120
O04253346 Probable galacturonosyltr no no 0.906 0.895 0.621 1e-119
O04536390 Probable galacturonosyltr no no 0.909 0.797 0.618 1e-118
Q9FWY9361 Probable galacturonosyltr no no 0.915 0.867 0.615 1e-116
Q9LHD2365 Probable galacturonosyltr no no 0.894 0.838 0.607 1e-114
Q8VYF4361 Probable galacturonosyltr no no 0.891 0.844 0.617 1e-113
Q9S7G2341 Probable galacturonosyltr no no 0.938 0.941 0.596 1e-112
Q9LN68351 Probable galacturonosyltr no no 0.903 0.880 0.621 1e-110
>sp|Q0V7R1|GATL3_ARATH Probable galacturonosyltransferase-like 3 OS=Arabidopsis thaliana GN=GATL3 PE=2 SV=1 Back     alignment and function desciption
 Score =  508 bits (1309), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/320 (78%), Positives = 279/320 (87%), Gaps = 1/320 (0%)

Query: 23  ELPRFREAPAFRNGRECPKATWSALDRRSHNPSIIHISMTLDSTYLRGSVAGVFSVLQHA 82
           +LP FREAPAFRNGREC K TW   D   HNPSIIHI+MTLD+ YLRGSVAGVFSVLQHA
Sbjct: 27  DLPAFREAPAFRNGRECSKTTWIPSDH-EHNPSIIHIAMTLDAIYLRGSVAGVFSVLQHA 85

Query: 83  TCPENIVFHFISTQRQRLELSRTITATFPYLNFEIYRFDTNLVKGKISYSIRQALDQPLN 142
           +CPENIVFHFI+T R+  +L R I++TFPYL + IY FD NLV+ KIS SIR+ALDQPLN
Sbjct: 86  SCPENIVFHFIATHRRSADLRRIISSTFPYLTYHIYHFDPNLVRSKISSSIRRALDQPLN 145

Query: 143 YARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSK 202
           YARIYLADLLP+ V R+IYFDSDL+VVDDVAKLW I+LR  V+GAPEYCHANFTNYFTS+
Sbjct: 146 YARIYLADLLPIAVRRVIYFDSDLVVVDDVAKLWRIDLRRHVVGAPEYCHANFTNYFTSR 205

Query: 203 FWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPP 262
           FWS+  +   +K R+PCYFNTGVMVIDL KWRE R T KLE WMR+QK++RIYELGSLPP
Sbjct: 206 FWSSQGYKSALKDRKPCYFNTGVMVIDLGKWRERRVTVKLETWMRIQKRHRIYELGSLPP 265

Query: 263 FLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRIDSKKPCP 322
           FLLVFAGDVE VEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLR+DS++PCP
Sbjct: 266 FLLVFAGDVEPVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRLDSRRPCP 325

Query: 323 LDSLWAPYDLFRHKSLFSDS 342
           LDSLWAPYDLFR+  L SDS
Sbjct: 326 LDSLWAPYDLFRYSPLISDS 345




May be involved in pectin and/or xylans biosynthesis in cell walls.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q9M8J2|GATL4_ARATH Probable galacturonosyltransferase-like 4 OS=Arabidopsis thaliana GN=GATL4 PE=2 SV=1 Back     alignment and function description
>sp|O48684|GATL8_ARATH Probable galacturonosyltransferase-like 8 OS=Arabidopsis thaliana GN=GATL8 PE=2 SV=1 Back     alignment and function description
>sp|O04253|GATL6_ARATH Probable galacturonosyltransferase-like 6 OS=Arabidopsis thaliana GN=GATL6 PE=2 SV=1 Back     alignment and function description
>sp|O04536|GATL9_ARATH Probable galacturonosyltransferase-like 9 OS=Arabidopsis thaliana GN=GATL9 PE=2 SV=1 Back     alignment and function description
>sp|Q9FWY9|GATL5_ARATH Probable galacturonosyltransferase-like 5 OS=Arabidopsis thaliana GN=GATL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LHD2|GATLA_ARATH Probable galacturonosyltransferase-like 10 OS=Arabidopsis thaliana GN=GATL10 PE=2 SV=1 Back     alignment and function description
>sp|Q8VYF4|GATL7_ARATH Probable galacturonosyltransferase-like 7 OS=Arabidopsis thaliana GN=GATL7 PE=2 SV=1 Back     alignment and function description
>sp|Q9S7G2|GATL2_ARATH Probable galacturonosyltransferase-like 2 OS=Arabidopsis thaliana GN=GATL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LN68|GATL1_ARATH Probable galacturonosyltransferase-like 1 OS=Arabidopsis thaliana GN=GATL1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
225423891345 PREDICTED: probable galacturonosyltransf 0.973 0.965 0.791 1e-158
224108539342 glycosyltransferase, CAZy family GT8 [Po 0.991 0.991 0.766 1e-155
224101685346 glycosyltransferase, CAZy family GT8 [Po 0.973 0.962 0.766 1e-154
356495990338 PREDICTED: probable galacturonosyltransf 0.950 0.961 0.792 1e-153
356499719342 PREDICTED: probable galacturonosyltransf 0.941 0.941 0.797 1e-152
357464109343 Glycosyltransferase CAZy family GT8 [Med 0.941 0.938 0.772 1e-149
255566847344 transferase, transferring glycosyl group 0.906 0.901 0.786 1e-147
449493504405 PREDICTED: probable galacturonosyltransf 0.932 0.787 0.764 1e-144
449434660333 PREDICTED: probable galacturonosyltransf 0.932 0.957 0.764 1e-144
297849708345 hypothetical protein ARALYDRAFT_471480 [ 0.932 0.924 0.790 1e-144
>gi|225423891|ref|XP_002281658.1| PREDICTED: probable galacturonosyltransferase-like 3 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/336 (79%), Positives = 298/336 (88%), Gaps = 3/336 (0%)

Query: 9   LLIFFTIIFPAI--SGELPRFREAPAFRNGRECPKATWSALDRRSHNPSIIHISMTLDST 66
           L++   + FPA   SG+LP F EAPAFRNG ECP+ TWS+L + S+NPSIIHI+MTLD+T
Sbjct: 11  LILSIAVHFPATVTSGDLPSFSEAPAFRNGEECPRTTWSSLPKGSYNPSIIHIAMTLDAT 70

Query: 67  YLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFPYLNFEIYRFDTNLVK 126
           YLRGS+AGV SVLQHA+CPENIVFHF+++ R R EL R I  TFPYL+F +Y FDTNLVK
Sbjct: 71  YLRGSIAGVLSVLQHASCPENIVFHFLASHR-RAELRRIIVTTFPYLSFHLYHFDTNLVK 129

Query: 127 GKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLG 186
           GKIS SIR+ALDQPLNYARIYLADLLP  V RIIYFDSDLIVVDDVAKLW INL   VLG
Sbjct: 130 GKISSSIRRALDQPLNYARIYLADLLPGGVRRIIYFDSDLIVVDDVAKLWEINLGPHVLG 189

Query: 187 APEYCHANFTNYFTSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWM 246
           APEYCHANFTNYFT+KFWSNP F+ + +GR+PCYFNTGVMVIDL +WREG++TE+LE WM
Sbjct: 190 APEYCHANFTNYFTAKFWSNPAFTTSFRGRKPCYFNTGVMVIDLWRWREGKFTERLETWM 249

Query: 247 RVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWS 306
           R+QK+YRIY+LGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWS
Sbjct: 250 RIQKRYRIYQLGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWS 309

Query: 307 GKGKPWLRIDSKKPCPLDSLWAPYDLFRHKSLFSDS 342
           GKGKPWLR+DSK+PCPLDSLWAPYDLFRH SL SDS
Sbjct: 310 GKGKPWLRLDSKRPCPLDSLWAPYDLFRHASLISDS 345




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108539|ref|XP_002314884.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi|222863924|gb|EEF01055.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224101685|ref|XP_002312381.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi|222852201|gb|EEE89748.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356495990|ref|XP_003516853.1| PREDICTED: probable galacturonosyltransferase-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356499719|ref|XP_003518684.1| PREDICTED: probable galacturonosyltransferase-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357464109|ref|XP_003602336.1| Glycosyltransferase CAZy family GT8 [Medicago truncatula] gi|355491384|gb|AES72587.1| Glycosyltransferase CAZy family GT8 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255566847|ref|XP_002524407.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223536368|gb|EEF38018.1| transferase, transferring glycosyl groups, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449493504|ref|XP_004159321.1| PREDICTED: probable galacturonosyltransferase-like 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434660|ref|XP_004135114.1| PREDICTED: probable galacturonosyltransferase-like 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297849708|ref|XP_002892735.1| hypothetical protein ARALYDRAFT_471480 [Arabidopsis lyrata subsp. lyrata] gi|297338577|gb|EFH68994.1| hypothetical protein ARALYDRAFT_471480 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
TAIR|locus:2205314345 GATL3 "galacturonosyltransfera 0.997 0.988 0.746 3.7e-142
TAIR|locus:2082450351 GATL4 "galacturonosyltransfera 0.880 0.857 0.668 1.6e-118
TAIR|locus:2032357393 LGT9 [Arabidopsis thaliana (ta 0.918 0.798 0.619 5.2e-113
TAIR|locus:2132218346 GATL6 "galacturonosyltransfera 0.903 0.893 0.623 3.6e-112
TAIR|locus:2020638390 LGT8 "glucosyl transferase fam 0.918 0.805 0.617 6.8e-111
TAIR|locus:2081670361 GATL7 "galacturonosyltransfera 0.891 0.844 0.620 1e-109
TAIR|locus:2024740361 GATL5 "galacturonosyltransfera 0.915 0.867 0.615 7e-109
TAIR|locus:2095420365 GATL10 "galacturonosyltransfer 0.944 0.884 0.582 1e-107
TAIR|locus:2016432351 PARVUS "AT1G19300" [Arabidopsi 0.953 0.928 0.598 1.2e-106
TAIR|locus:2101724341 GATL2 "galacturonosyltransfera 0.938 0.941 0.599 4e-106
TAIR|locus:2205314 GATL3 "galacturonosyltransferase-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1390 (494.4 bits), Expect = 3.7e-142, P = 3.7e-142
 Identities = 256/343 (74%), Positives = 290/343 (84%)

Query:     1 MRLKFESRLLIFFTIIFPAIS-GELPRFREAPAFRNGRECPKATWSALDRRSHNPSIIHI 59
             +RL+    LL+  TI    ++  +LP FREAPAFRNGREC K TW   D   HNPSIIHI
Sbjct:     4 LRLRLCLLLLLPITISCVTVTLTDLPAFREAPAFRNGRECSKTTWIPSDHE-HNPSIIHI 62

Query:    60 SMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFPYLNFEIYR 119
             +MTLD+ YLRGSVAGVFSVLQHA+CPENIVFHFI+T R+  +L R I++TFPYL + IY 
Sbjct:    63 AMTLDAIYLRGSVAGVFSVLQHASCPENIVFHFIATHRRSADLRRIISSTFPYLTYHIYH 122

Query:   120 FDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSIN 179
             FD NLV+ KIS SIR+ALDQPLNYARIYLADLLP+ V R+IYFDSDL+VVDDVAKLW I+
Sbjct:   123 FDPNLVRSKISSSIRRALDQPLNYARIYLADLLPIAVRRVIYFDSDLVVVDDVAKLWRID 182

Query:   180 LRGRVLGAPEYCHANFTNYFTSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYT 239
             LR  V+GAPEYCHANFTNYFTS+FWS+  +   +K R+PCYFNTGVMVIDL KWRE R T
Sbjct:   183 LRRHVVGAPEYCHANFTNYFTSRFWSSQGYKSALKDRKPCYFNTGVMVIDLGKWRERRVT 242

Query:   240 EKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLHPGP 299
              KLE WMR+QK++RIYELGSLPPFLLVFAGDVE VEHRWNQHGLGGDNLEGLCRNLHPGP
Sbjct:   243 VKLETWMRIQKRHRIYELGSLPPFLLVFAGDVEPVEHRWNQHGLGGDNLEGLCRNLHPGP 302

Query:   300 VSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHKSLFSDS 342
             VSLLHWSGKGKPWLR+DS++PCPLDSLWAPYDLFR+  L SDS
Sbjct:   303 VSLLHWSGKGKPWLRLDSRRPCPLDSLWAPYDLFRYSPLISDS 345




GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS
TAIR|locus:2082450 GATL4 "galacturonosyltransferase-like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032357 LGT9 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132218 GATL6 "galacturonosyltransferase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020638 LGT8 "glucosyl transferase family 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081670 GATL7 "galacturonosyltransferase-like 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024740 GATL5 "galacturonosyltransferase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095420 GATL10 "galacturonosyltransferase-like 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016432 PARVUS "AT1G19300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101724 GATL2 "galacturonosyltransferase-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0V7R1GATL3_ARATH2, ., 4, ., 1, ., -0.78120.93270.9246yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 1e-63
cd06429257 cd06429, GT8_like_1, GT8_like_1 represents a subfa 2e-34
PLN02867535 PLN02867, PLN02867, Probable galacturonosyltransfe 4e-26
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 6e-25
PLN02870533 PLN02870, PLN02870, Probable galacturonosyltransfe 5e-24
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 4e-23
PLN02742534 PLN02742, PLN02742, Probable galacturonosyltransfe 5e-23
PLN02829639 PLN02829, PLN02829, Probable galacturonosyltransfe 2e-22
PLN02523559 PLN02523, PLN02523, galacturonosyltransferase 5e-22
PLN02659534 PLN02659, PLN02659, Probable galacturonosyltransfe 5e-22
PLN02718603 PLN02718, PLN02718, Probable galacturonosyltransfe 6e-22
PLN02910657 PLN02910, PLN02910, polygalacturonate 4-alpha-gala 2e-21
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 5e-16
PLN02769629 PLN02769, PLN02769, Probable galacturonosyltransfe 6e-15
cd06431280 cd06431, GT8_LARGE_C, LARGE catalytic domain has c 3e-09
cd06432248 cd06432, GT8_HUGT1_C_like, The C-terminal domain o 3e-08
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
 Score =  201 bits (514), Expect = 1e-63
 Identities = 78/260 (30%), Positives = 123/260 (47%), Gaps = 13/260 (5%)

Query: 58  HISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFPYLNFE- 116
            I + LD  Y+ G+   + S+L H + P +++FH ++         +           + 
Sbjct: 1   VIVLALDDNYVLGAGVLIKSLLLHNSDPLHLLFHILTDDVSEENREKLNALGSQVSEVDV 60

Query: 117 IYRFDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLW 176
           +   D  ++       + +     LNYAR+YLADL P    +I+Y D+D+IV+ D+ +L+
Sbjct: 61  LEFSDIEMLSYLTLQLLLKKYWSLLNYARLYLADLFP-KYDKILYLDADIIVLGDLDELF 119

Query: 177 SINLRGRVLGAPEYCHANFTNYFTSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREG 236
            I+L G+V  A E              W     S  +    PCYFN GV+VI+L+KWRE 
Sbjct: 120 DIDLGGKVAAAVEDF--------DRYPWFKEALSAELGIPPPCYFNAGVLVINLKKWREE 171

Query: 237 RYTEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRNLH 296
             TEKL  W+       + +LG      +VF G V+ +  R+N HGLG  +     R L 
Sbjct: 172 NLTEKLIEWLNKNG--GLLKLGDQDILNIVFKGKVKPLPPRYNVHGLGYYS-YKKRRKLI 228

Query: 297 PGPVSLLHWSGKGKPWLRID 316
           P    ++H+ G  KPW  + 
Sbjct: 229 PENPKVIHYIGPTKPWHDLA 248


This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase. Length = 248

>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|133053 cd06431, GT8_LARGE_C, LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>gnl|CDD|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 342
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
PLN02718603 Probable galacturonosyltransferase 100.0
PLN02742534 Probable galacturonosyltransferase 100.0
PLN02829639 Probable galacturonosyltransferase 100.0
PLN02523559 galacturonosyltransferase 100.0
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 100.0
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 100.0
PLN02870533 Probable galacturonosyltransferase 100.0
PLN02769629 Probable galacturonosyltransferase 100.0
PLN02659534 Probable galacturonosyltransferase 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
PLN02867535 Probable galacturonosyltransferase 100.0
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 100.0
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 100.0
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 100.0
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 100.0
PLN00176333 galactinol synthase 99.97
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 99.97
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 99.92
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 99.52
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 98.9
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 97.31
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 97.11
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 96.03
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 90.23
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 89.97
cd02515271 Glyco_transf_6 Glycosyltransferase family 6 compri 87.24
PLN03181453 glycosyltransferase; Provisional 82.7
PF04765305 DUF616: Protein of unknown function (DUF616); Inte 81.28
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
Probab=100.00  E-value=9.4e-51  Score=374.09  Aligned_cols=237  Identities=30%  Similarity=0.576  Sum_probs=195.1

Q ss_pred             ceEEEEeCcchhhchHHHHHHHHHhcCCCCCEEEEEEecCcCHHHHHHHHHhh-CCCccEEEEEecCccccCccchh---
Q 042515           57 IHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITAT-FPYLNFEIYRFDTNLVKGKISYS---  132 (342)
Q Consensus        57 i~I~~~~D~~yl~~~~v~i~Sll~~~~~~~~i~fhil~~~~s~~~l~~~l~~~-~p~~~~~~~~~d~~~~~~~i~~~---  132 (342)
                      +|||+++| ||+ ++++++.|++.|+++|++++|||++++.+.+.+++..... ..+.+++++.++...+.+.....   
T Consensus         1 ~hiv~~~D-n~l-~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~   78 (257)
T cd06429           1 IHVVIFSD-NRL-AAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLM   78 (257)
T ss_pred             CCEEEEec-chh-HHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhh
Confidence            69999999 999 5788889999999887899999999999987777665432 23678999999866554332211   


Q ss_pred             -------------hhhhhcCcchhHHHhhhhhcccccCcEEEEecceEEecchHHHHccccCCCeEEeecccccCccccc
Q 042515          133 -------------IRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYF  199 (342)
Q Consensus       133 -------------~~~~~~~~~~y~Rl~l~~llp~~vdRvIYLDsDiiV~~Di~~L~~~dl~~~~iaA~~d~~~~~~~~~  199 (342)
                                   .+.++.++++|+||++|++|| +++||||||+|+||++||++||++|++|+++||++|         
T Consensus        79 ~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp-~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d---------  148 (257)
T cd06429          79 QLESEADTSNLKQRKPEYISLLNFARFYLPELFP-KLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET---------  148 (257)
T ss_pred             hhhccccccccccCCccccCHHHHHHHHHHHHhh-hhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh---------
Confidence                         133567889999999999999 599999999999999999999999999999999853         


Q ss_pred             CccCCCCccccCCCCCCCCccceeeEEEEehhHHhhccHHHHHHHHHHHhccc--ccccCCCcchhhhhhcCceEecCcc
Q 042515          200 TSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKY--RIYELGSLPPFLLVFAGDVEGVEHR  277 (342)
Q Consensus       200 ~~~~w~~~~~~~~~~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~--~~~~~~DQd~lN~vf~~~i~~L~~~  277 (342)
                                          ||||||||||+++||+.++++++++|++...+.  ..+.++|||++|++|.|+++.||++
T Consensus       149 --------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~~~~~L~~~  208 (257)
T cd06429         149 --------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYGLTSPLDPS  208 (257)
T ss_pred             --------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccCeeEECChH
Confidence                                899999999999999999999999999865432  3467789999999999999999999


Q ss_pred             ccccCCCCCccccccccCCCCCcEEEeccCCCCCCccCCCCCCCCccccccccc
Q 042515          278 WNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYD  331 (342)
Q Consensus       278 wN~~~~~~~~~~~~~~~~~~~~~~IiHy~g~~KPW~~~~~~~~~~~~~lW~~Y~  331 (342)
                      ||+++++++....  .. ...+++||||+|+.|||+..+.   .+++++||.|.
T Consensus       209 wN~~~l~~~~~~~--~~-~~~~~~IIHy~G~~KPW~~~~~---~~~~~~w~~yl  256 (257)
T cd06429         209 WHVRGLGYNYGIR--PQ-DIKAAAVLHFNGNMKPWLRTAI---PSYKELWEKYL  256 (257)
T ss_pred             HcccCCccccccc--cc-ccCCcEEEEECCCCCCcCCCCC---ChHHHHHHHHh
Confidence            9998776543211  11 1247799999999999998754   25899999984



A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
1g9r_A311 Crystal Structure Of Galactosyltransferase Lgtc In 4e-06
1ss9_A311 Crystal Structural Analysis Of Active Site Mutant Q 1e-05
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose Length = 311 Back     alignment and structure

Iteration: 1

Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 23/183 (12%) Query: 143 YARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSK 202 YAR+ L + + +++Y D D++V D + LW +L LGA + K Sbjct: 84 YARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQK 142 Query: 203 FWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPP 262 G G YFN GV++I+L+KWR + W+ K Y+ + Sbjct: 143 I-------GXADGEY--YFNAGVLLINLKKWRRHDIFKXSSEWVEQYKDVXQYQDQDILN 193 Query: 263 FLLVFAGDVEGVEHRWN---------QHGLGGDNLEGLCRNLHP--GPVSLLHWSGKGKP 311 L F G V R+N + + + L R+ PV++ H+ G KP Sbjct: 194 GL--FKGGVCYANSRFNFXPTNYAFXANWFASRHTDPLYRDRTNTVXPVAVSHYCGPAKP 251 Query: 312 WLR 314 W R Sbjct: 252 WHR 254
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 6e-59
3tzt_A276 Glycosyl transferase family 8; structural genomics 2e-44
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
 Score =  191 bits (487), Expect = 6e-59
 Identities = 54/288 (18%), Positives = 90/288 (31%), Gaps = 35/288 (12%)

Query: 57  IHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFPYLNFE 116
           + I    D  Y         SV         I FH +            + A        
Sbjct: 1   MDIVFAADDNYAAYLCVAAKSVEAAHP-DTEIRFHVL-DAGISEANRAAVAANLRGGGGN 58

Query: 117 I--YRFDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAK 174
           I     +     G   + +         YAR+ L + +     +++Y D D++V D +  
Sbjct: 59  IRFIDVNPEDFAG---FPLNIRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTP 114

Query: 175 LWSINLRGRVLGA-PEYCHANFTNYFTSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKW 233
           LW  +L    LGA  +        Y      ++             YFN GV++I+L+KW
Sbjct: 115 LWDTDLGDNWLGASIDLFVERQEGYKQKIGMADG----------EYYFNAGVLLINLKKW 164

Query: 234 REGRYTEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCR 293
           R     +    W+   K    Y+   +     +F G V     R+N        +     
Sbjct: 165 RRHDIFKMSSEWVEQYKDVMQYQDQDILNG--LFKGGVCYANSRFNFMPTNYAFMANWFA 222

Query: 294 NLHPGP-----------VSLLHWSGKGKPWLRIDSKKPCPLDSLWAPY 330
           + H  P           V++ H+ G  KPW R  +         +   
Sbjct: 223 SRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTA---WGAERFTEL 267


>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 99.97
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 99.96
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
Probab=100.00  E-value=2.6e-49  Score=368.67  Aligned_cols=261  Identities=17%  Similarity=0.251  Sum_probs=183.1

Q ss_pred             CcceEEEEeCcchhhchHHHHHHHHHhcCCCCCEEEEEEecCcCHHHHHHHHHhh--CCCccEEEEEecCccccCccchh
Q 042515           55 SIIHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITAT--FPYLNFEIYRFDTNLVKGKISYS  132 (342)
Q Consensus        55 ~~i~I~~~~D~~yl~~~~v~i~Sll~~~~~~~~i~fhil~~~~s~~~l~~~l~~~--~p~~~~~~~~~d~~~~~~~i~~~  132 (342)
                      -.|||++|+|++|+++++|+++||++|+++ ++++|||++++++++..+ .|++.  ..+.+++++.++.+.+.+...  
T Consensus         4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~-~L~~~~~~~~~~i~~~~~~~~~~~~~~~--   79 (276)
T 3tzt_A            4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLK-DLGEDLKKFSYTLYPIRATDDLFSFAKV--   79 (276)
T ss_dssp             -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHH-HHHHHHHTTTCEEEEEECC-----------
T ss_pred             eeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHH-HHHHHHHHcCCEEEEEEeCHHHHhcCcc--
Confidence            469999999999999999999999999985 689999999999876532 33322  124577888887655544221  


Q ss_pred             hhhhhcCcchhHHHhhhhhcccccCcEEEEecceEEecchHHHHccccCCCeEEeecccccCcccccCccCCCCccccCC
Q 042515          133 IRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSKFWSNPVFSGT  212 (342)
Q Consensus       133 ~~~~~~~~~~y~Rl~l~~llp~~vdRvIYLDsDiiV~~Di~~L~~~dl~~~~iaA~~d~~~~~~~~~~~~~w~~~~~~~~  212 (342)
                        ..+.++.+|+||++|+++|++++||||||+|+||++||++||++|++|+.+||+++|....        |.+......
T Consensus        80 --~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~--------~~~~~~~~~  149 (276)
T 3tzt_A           80 --TDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTD--------MANNVNRIR  149 (276)
T ss_dssp             ------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC----------------------
T ss_pred             --ccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccch--------HHHHHHHhc
Confidence              1345778999999999999779999999999999999999999999999999999875320        111000112


Q ss_pred             CCCCCCccceeeEEEEehhHHhhccHHHHHHHHHHHhcccccccCCCcchhhhhhcCceEecCc-cccccCCCCCc--cc
Q 042515          213 VKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEH-RWNQHGLGGDN--LE  289 (342)
Q Consensus       213 ~~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~DQd~lN~vf~~~i~~L~~-~wN~~~~~~~~--~~  289 (342)
                      + +...+|||||||||||++||+.++++++++|+++++. + +.++|||+||.+|.++++.||+ +||++......  ..
T Consensus       150 l-~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~-~-~~~~DQd~LN~~f~~~~~~Lp~~~wN~~~~~~~~~~~~  226 (276)
T 3tzt_A          150 L-GTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHM-N-LLLPDQDILNAMYGDRIYPLDDLIYNYDARNYSSYLIR  226 (276)
T ss_dssp             -------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHHHGGGEEEEEHHHHSEETTCHHHHHHH
T ss_pred             C-CCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccc-c-ccCCChhHHHHHHhCCEEECCchheeeecccchhhhcc
Confidence            2 2235899999999999999999999999999986542 2 2469999999999999999999 99998532110  00


Q ss_pred             cc-cccC--CCCCcEEEeccCCCCCCccCCCCCCCCcccccccccccCC
Q 042515          290 GL-CRNL--HPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRH  335 (342)
Q Consensus       290 ~~-~~~~--~~~~~~IiHy~g~~KPW~~~~~~~~~~~~~lW~~Y~~~~~  335 (342)
                      .. ..+.  ...+++||||+|+.|||...+..   +++++||+|.....
T Consensus       227 ~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~---~~~~~w~~Y~~~~~  272 (276)
T 3tzt_A          227 SKKQADLAWLMDHTVVLHFCGRDKPWKKNHRN---KFTSLYKHYMSLTK  272 (276)
T ss_dssp             TTTCCSHHHHHHHCCEEECCSSCCTTSTTCCS---TTHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccCCeEEEECCCCCCcCCCCCC---chHHHHHHHHHHHH
Confidence            00 0000  01357999999999999987654   59999999976543



>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 342
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 2e-29
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 5e-07
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]
 Score =  112 bits (280), Expect = 2e-29
 Identities = 57/298 (19%), Positives = 92/298 (30%), Gaps = 35/298 (11%)

Query: 57  IHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSR-TITATFPYLNF 115
           + I    D  Y         SV         I FH +         +           N 
Sbjct: 1   MDIVFAADDNYAAYLCVAAKSVEAAHP-DTEIRFHVLDAGISEANRAAVAANLRGGGGNI 59

Query: 116 EIYRFDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKL 175
                +     G   + +         YAR+ L + +     +++Y D D++V D +  L
Sbjct: 60  RFIDVNPEDFAG---FPLNIRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPL 115

Query: 176 WSINLRGRVLGA-PEYCHANFTNYFTSKFWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWR 234
           W  +L    LGA  +        Y      ++             YFN GV++I+L+KWR
Sbjct: 116 WDTDLGDNWLGASIDLFVERQEGYKQKIGMADG----------EYYFNAGVLLINLKKWR 165

Query: 235 EGRYTEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRN 294
                +    W+   K    Y          +F G V     R+N        +     +
Sbjct: 166 RHDIFKMSSEWVEQYKDVMQY--QDQDILNGLFKGGVCYANSRFNFMPTNYAFMANWFAS 223

Query: 295 LHP-----------GPVSLLHWSGKGKPWLRIDSKKPCPL-----DSLWAPYDLFRHK 336
            H             PV++ H+ G  KPW R  +            SL    + +R K
Sbjct: 224 RHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTTVPEEWRGK 281


>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.96
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 95.8
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 94.72
d1xhba2328 Polypeptide N-acetylgalactosaminyltransferase 1, N 91.39
d1s4na_339 Glycolipid 2-alpha-mannosyltransferase {Baker's ye 80.88
d1fo8a_343 N-acetylglucosaminyltransferase I {Rabbit (Oryctol 80.85
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]
Probab=100.00  E-value=1e-45  Score=342.45  Aligned_cols=258  Identities=21%  Similarity=0.280  Sum_probs=193.3

Q ss_pred             ceEEEEeCcchhhchHHHHHHHHHhcCCCCCEEEEEEecCcCHHHHHHHHHhhCC--CccEEEEEecCccccCccchhhh
Q 042515           57 IHISMTLDSTYLRGSVAGVFSVLQHATCPENIVFHFISTQRQRLELSRTITATFP--YLNFEIYRFDTNLVKGKISYSIR  134 (342)
Q Consensus        57 i~I~~~~D~~yl~~~~v~i~Sll~~~~~~~~i~fhil~~~~s~~~l~~~l~~~~p--~~~~~~~~~d~~~~~~~i~~~~~  134 (342)
                      ||||+|+|++|+.++.|+++||++|++. ++++||+++++++.+..+ .+.+...  +.+++++.++...+......   
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~~~~~---   75 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRA-AVAANLRGGGGNIRFIDVNPEDFAGFPLN---   75 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHH-HHHHTSGGGTTTEEEEECCGGGGTTSCCC---
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHH-HHHHHHHHcCCeEEEEECCchHhcccccc---
Confidence            7999999999999999999999998874 679999999999875533 3433322  34678888876655442211   


Q ss_pred             hhhcCcchhHHHhhhhhcccccCcEEEEecceEEecchHHHHccccCCCeEEeecccccCcccccCccCCCCccccCCCC
Q 042515          135 QALDQPLNYARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSKFWSNPVFSGTVK  214 (342)
Q Consensus       135 ~~~~~~~~y~Rl~l~~llp~~vdRvIYLDsDiiV~~Di~~L~~~dl~~~~iaA~~d~~~~~~~~~~~~~w~~~~~~~~~~  214 (342)
                      ..+.++++|+||++|++|| +++||||||+|+||++||++||+++++++.+||+.++.......     +   ....++ 
T Consensus        76 ~~~~s~~~y~Rl~l~~~lp-~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~-----~---~~~~~~-  145 (282)
T d1ga8a_          76 IRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEG-----Y---KQKIGM-  145 (282)
T ss_dssp             CTTCCGGGGGGGGHHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTT-----H---HHHTTC-
T ss_pred             ccccCHHHHHHHHHhhhCC-ccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhh-----h---HHHhCC-
Confidence            2345678999999999999 59999999999999999999999999999999987753211100     0   001112 


Q ss_pred             CCCCccceeeEEEEehhHHhhccHHHHHHHHHHHhcccccccCCCcchhhhhhcCceEecCccccccCCCCC---c-cc-
Q 042515          215 GRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGD---N-LE-  289 (342)
Q Consensus       215 ~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~DQd~lN~vf~~~i~~L~~~wN~~~~~~~---~-~~-  289 (342)
                      ..+.+||||||||+|+++||+.+++++++++++.+..  .+.++||++||.+|.|++..||.+||++..++.   + .. 
T Consensus       146 ~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~--~~~~~DQd~LN~~f~~~~~~L~~~~N~~~~~~~~~~~~~~~  223 (282)
T d1ga8a_         146 ADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKD--VMQYQDQDILNGLFKGGVCYANSRFNFMPTNYAFMANWFAS  223 (282)
T ss_dssp             CTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTT--TCSSTHHHHHHHHHTTSEEEECGGGSBCHHHHHTCC----C
T ss_pred             CCCCceeecceeeechhhhhhhhHHHHHHHHHHhccc--CcccCchhHHHHHhcCCEEeCCHHHeecccccccccccccc
Confidence            2357899999999999999999999999999986543  234689999999999999999999998742110   0 00 


Q ss_pred             ----cccc--cCCCCCcEEEeccCCCCCCccCCCCCCCCcccccccccccC
Q 042515          290 ----GLCR--NLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFR  334 (342)
Q Consensus       290 ----~~~~--~~~~~~~~IiHy~g~~KPW~~~~~~~~~~~~~lW~~Y~~~~  334 (342)
                          ...+  .....+++||||+|+.|||+.....   ++...|++|....
T Consensus       224 ~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~---~~~~~~~~~~~~~  271 (282)
T d1ga8a_         224 RHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTA---WGAERFTELAGSL  271 (282)
T ss_dssp             SCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCS---TTTHHHHHHHTTC
T ss_pred             ccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCC---hhHHHHHHHHHhh
Confidence                0000  0112467999999999999987654   4678888776554



>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure