Citrus Sinensis ID: 042517

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
MGEFRNIIPTVDRSPFFISTEDNQDGKKMYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLRSGAPLQVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWDFMAALHYFPATECENNGIIVSTLYNWVKPLSQFTQEYGGFLYKDYQES
cccccccccEEEccccccccHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHccccccccccccccccccccccccEEEccccccccEEEEccccc
cccEEccccEEEccHcccccccHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHcccccHHHHHHHccccccccccccEEEEEEHcccccHHHHHHHHcccEccccccc
mgefrniiptvdrspffistednqdgkkmyGFFQIVNRGIPQKLFSQAIELSKtfygysddekklfnsslrsgapLQVLKEVFSRLKGTGLLIESILNEclclptnflkiynndrSWDFMAALhyfpatecenngiiVSTLYNWVKPLSQFTQEYGGFlykdyqes
mgefrniiptvdrspffiSTEDNQDGKKMYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLRSGAPLQVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWDFMAALHYFPATECENNGIIVSTLYNWVKPLSQFTQEYGGFLYKDYQES
MGEFRNIIPTVDRSPFFISTEDNQDGKKMYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLRSGAPLQVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWDFMAALHYFPATECENNGIIVSTLYNWVKPLSQFTQEYGGFLYKDYQES
******IIPTVDRSPFFISTE**QDGKKMYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLRSGAPLQVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWDFMAALHYFPATECENNGIIVSTLYNWVKPLSQFTQEYGGFLYKD****
****RNIIPTVDRSPFFI*****QDGKKMYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEK**********APLQVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWDFMAALHYFPATECENNGIIVSTLYNWVKPLSQFTQEYGGFLYKD****
MGEFRNIIPTVDRSPFFISTEDNQDGKKMYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLRSGAPLQVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWDFMAALHYFPATECENNGIIVSTLYNWVKPLSQFTQEYGGFLYKDYQES
*GEFRNIIPTVDRSPFFISTEDNQDGKKMYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLRSGAPLQVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWDFMAALHYFPATECENNGIIVSTLYNWVKPLSQFTQEYGGFLYKD****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGEFRNIIPTVDRSPFFISTEDNQDGKKMYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLRSGAPLQVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWDFMAALHYFPATECENNGIIVSTLYNWVKPLSQFTQEYGGFLYKDYQES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query166
224119092 317 predicted protein [Populus trichocarpa] 0.789 0.413 0.443 3e-29
118484055 317 unknown [Populus trichocarpa] 0.789 0.413 0.443 8e-29
255541005 315 Flavonol synthase/flavanone 3-hydroxylas 0.765 0.403 0.431 6e-26
388497146 315 unknown [Medicago truncatula] 0.771 0.406 0.412 3e-24
356508566 314 PREDICTED: sexual differentiation proces 0.789 0.417 0.420 3e-24
255647747247 unknown [Glycine max] 0.789 0.530 0.415 3e-23
413919709 335 hypothetical protein ZEAMMB73_971883 [Ze 0.777 0.385 0.342 1e-22
2224892 314 gibberellin 7-oxidase [Cucurbita maxima] 0.765 0.404 0.387 4e-22
449439261 315 PREDICTED: flavonol synthase/flavanone 3 0.753 0.396 0.393 4e-22
242077382 318 hypothetical protein SORBIDRAFT_06g03041 0.765 0.399 0.348 7e-21
>gi|224119092|ref|XP_002317983.1| predicted protein [Populus trichocarpa] gi|222858656|gb|EEE96203.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 104/185 (56%), Gaps = 54/185 (29%)

Query: 1   MGEFRNIIPTVDRSPFFISTEDNQDGKKM-----------YGFFQIVNRGIPQKLFSQAI 49
           MGE  + IPTVD SP F   ED++DG K            YGFFQ+VN G+P  L ++AI
Sbjct: 1   MGE--SCIPTVDLSPCF--REDDEDGMKKAKEIIGQACSEYGFFQVVNHGVPLGLMTRAI 56

Query: 50  ELSKTFYGYSDDEKKLFNSSLRSGAPL--------------------------------- 76
           ELSKTF+    +E+KL   +  SGAPL                                 
Sbjct: 57  ELSKTFFETLPNEEKL-KCAPNSGAPLPAGYNRQPDQSPDKNEYLLMFPPGSNLNVYPQN 115

Query: 77  -----QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWDFMAALHYFPATEC 131
                +VL+++F+     G+LIESIL++CL LP+NFLK +N+DRSWDFMA LHYFPATE 
Sbjct: 116 PPHFREVLEQIFAYFTKLGVLIESILSQCLGLPSNFLKEFNHDRSWDFMAGLHYFPATEA 175

Query: 132 ENNGI 136
           ENNGI
Sbjct: 176 ENNGI 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118484055|gb|ABK93913.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255541005|ref|XP_002511567.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223550682|gb|EEF52169.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388497146|gb|AFK36639.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356508566|ref|XP_003523026.1| PREDICTED: sexual differentiation process protein isp7-like [Glycine max] Back     alignment and taxonomy information
>gi|255647747|gb|ACU24334.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|413919709|gb|AFW59641.1| hypothetical protein ZEAMMB73_971883 [Zea mays] Back     alignment and taxonomy information
>gi|2224892|gb|AAB64346.1| gibberellin 7-oxidase [Cucurbita maxima] Back     alignment and taxonomy information
>gi|449439261|ref|XP_004137405.1| PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Cucumis sativus] gi|449518219|ref|XP_004166140.1| PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|242077382|ref|XP_002448627.1| hypothetical protein SORBIDRAFT_06g030410 [Sorghum bicolor] gi|241939810|gb|EES12955.1| hypothetical protein SORBIDRAFT_06g030410 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 3e-07
COG3491 322 COG3491, PcbC, Isopenicillin N synthase and relate 5e-05
PLN02704 335 PLN02704, PLN02704, flavonol synthase 0.002
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 0.004
PLN02904 357 PLN02904, PLN02904, oxidoreductase 0.004
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information 
 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 30 YGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKK 64
          +GFFQ+VN GIP++L  +  E ++ F+    +EK 
Sbjct: 27 WGFFQLVNHGIPEELIDRLFEAAREFFALPLEEKL 61

This is the highly conserved N-terminal region of proteins with 2-oxoglutarate/Fe(II)-dependent dioxygenase activity. Length = 113
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 166
PLN02216357 protein SRG1 100.0
PLN02254 358 gibberellin 3-beta-dioxygenase 100.0
PLN02997325 flavonol synthase 100.0
PLN02912 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515 358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02758 361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299 321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02276 361 gibberellin 20-oxidase 100.0
PLN03178 360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947 374 oxidoreductase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
COG3491 322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02904 357 oxidoreductase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02750 345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002 332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02393 362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02485329 oxidoreductase 100.0
PLN02156 335 gibberellin 2-beta-dioxygenase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365 300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403 303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.95
PLN03176120 flavanone-3-hydroxylase; Provisional 99.76
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.71
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.48
PF07350 416 DUF1479: Protein of unknown function (DUF1479); In 86.56
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=5.5e-43  Score=287.82  Aligned_cols=155  Identities=20%  Similarity=0.250  Sum_probs=133.6

Q ss_pred             CCCceeeCCCCCCCCc----hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC--------
Q 042517            6 NIIPTVDRSPFFISTE----DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR--------   71 (166)
Q Consensus         6 ~~iPvIDls~~~~~~~----~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~--------   71 (166)
                      ..||||||+.+.+++.    .++|++|  +||||||+|||||.++++++++.+++||+||.|+|+++.....        
T Consensus        51 ~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~  130 (357)
T PLN02216         51 SEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQA  130 (357)
T ss_pred             CCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCcc
Confidence            4799999999866543    2357777  9999999999999999999999999999999999999754221        


Q ss_pred             ---C------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCcHH
Q 042517           72 ---S------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWD  118 (166)
Q Consensus        72 ---s------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~  118 (166)
                         +                        .||+      +++++|+++|++|+.+|++++|++|||++++|.+++.....+
T Consensus       131 ~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~  210 (357)
T PLN02216        131 FVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQ  210 (357)
T ss_pred             ccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchh
Confidence               0                        3775      899999999999999999999999999999999998764334


Q ss_pred             HhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517          119 FMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD  162 (166)
Q Consensus       119 l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~  162 (166)
                      .+| ++|||+|+ ++ .+|+++|||+|+||||+|+ ++++||||+.
T Consensus       211 ~lR-l~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~-~~v~GLQV~~  254 (357)
T PLN02216        211 SIR-MNYYPPCPQPDQVIGLTPHSDAVGLTILLQV-NEVEGLQIKK  254 (357)
T ss_pred             eeE-EeecCCCCCcccccCccCcccCceEEEEEec-CCCCceeEEE
Confidence            445 99999999 77 8999999999999999994 4699999963

>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-08
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-06
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-05
3on7_A 280 Oxidoreductase, iron/ascorbate family; structural 2e-05
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-04
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-04
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 8  IPTVDRSPFFISTEDNQDGK--KMYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKL 65
          +PT   +        ++  +  +  G F + + G+       A +L   F+ +  + +K 
Sbjct: 5  VPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKR 64

Query: 66 F 66
           
Sbjct: 65 A 65
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query166
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
2dbn_A 461 Hypothetical protein YBIU; alpha/beta structure, s 82.93
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-42  Score=282.33  Aligned_cols=153  Identities=19%  Similarity=0.229  Sum_probs=133.1

Q ss_pred             CCCceeeCCCCCCCCch------hhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCC---C---
Q 042517            6 NIIPTVDRSPFFISTED------NQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSL---R---   71 (166)
Q Consensus         6 ~~iPvIDls~~~~~~~~------~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~---~---   71 (166)
                      ..||||||+.+.+++..      ++|++|  +||||||+||||+.++++++++.+++||+||.|+|+++....   .   
T Consensus        45 ~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~G  124 (356)
T 1gp6_A           45 PQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG  124 (356)
T ss_dssp             CCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSE
T ss_pred             CCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccc
Confidence            46999999998765532      356777  999999999999999999999999999999999999986431   1   


Q ss_pred             ---------C----------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcC
Q 042517           72 ---------S----------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNND  114 (166)
Q Consensus        72 ---------s----------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~  114 (166)
                               +                      .||+      +++++|+++|.+|+.+|+++||++||+++++|.+.+..
T Consensus       125 y~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~  204 (356)
T 1gp6_A          125 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGG  204 (356)
T ss_dssp             EECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTH
T ss_pred             cCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence                     0                      2775      89999999999999999999999999999999999873


Q ss_pred             ---CcHHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517          115 ---RSWDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD  162 (166)
Q Consensus       115 ---~~~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~  162 (166)
                         ....+ | ++|||+|+ ++ .+|+++|||+|+||||+|  |+++||||++
T Consensus       205 ~~~~~~~l-r-l~~YPp~~~~~~~~g~~~HtD~g~lTlL~q--d~v~GLQV~~  253 (356)
T 1gp6_A          205 LEELLLQM-K-INYYPKCPQPELALGVEAHTDVSALTFILH--NMVPGLQLFY  253 (356)
T ss_dssp             HHHCEEEE-E-EEEECCCSSTTTCCSEEEECCCSSEEEEEE--CSCCCEEEEE
T ss_pred             cCCcccee-e-eeecCCCCCcccccCcCCccCCCeEEEEEE--cCCCCeEEec
Confidence               33344 4 99999999 77 899999999999999999  8899999984
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 166
d1dcsa_ 311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-07
d1gp6a_ 349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-06
d1w9ya1 307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 3e-06
d1odma_ 329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 5e-04
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Deacetoxycephalosporin C synthase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 8  IPTVDRSPFFISTEDNQDGK--KMYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKL 65
          +PT   +        ++  +  +  G F + + G+       A +L   F+ +  + +K 
Sbjct: 5  VPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKR 64

Query: 66 F 66
           
Sbjct: 65 A 65
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query166
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1 307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1dcsa_ 311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d2csga1 417 Hypothetical protein YbiU {Salmonella typhimurium 82.84
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.4e-41  Score=270.17  Aligned_cols=155  Identities=19%  Similarity=0.207  Sum_probs=133.3

Q ss_pred             CCCCceeeCCCCCCCCch------hhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC-----
Q 042517            5 RNIIPTVDRSPFFISTED------NQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR-----   71 (166)
Q Consensus         5 ~~~iPvIDls~~~~~~~~------~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~-----   71 (166)
                      ..+||||||+.+.+++..      ++|++|  ++|||||+||||+.++++++++++++||+||.|+|+++.....     
T Consensus        43 ~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~  122 (349)
T d1gp6a_          43 GPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ  122 (349)
T ss_dssp             SCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCS
T ss_pred             CCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCcc
Confidence            457999999999877652      256677  9999999999999999999999999999999999999865431     


Q ss_pred             ---C-----------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhc
Q 042517           72 ---S-----------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNN  113 (166)
Q Consensus        72 ---s-----------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~  113 (166)
                         +                             .||+      +.+++|+++|.+++.+|+++++++||+++++|.+.+.
T Consensus       123 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~  202 (349)
T d1gp6a_         123 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVG  202 (349)
T ss_dssp             EEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTT
T ss_pred             ccccccccccccccchhhhhcccccccccccccccccccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhc
Confidence               0                             2554      8899999999999999999999999999999998874


Q ss_pred             CC--cHHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517          114 DR--SWDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD  162 (166)
Q Consensus       114 ~~--~~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~  162 (166)
                      ..  ....+| ++|||+++ ++ .+|+++|||+|+||||+|  +.++||||+.
T Consensus       203 ~~~~~~~~lr-l~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q--~~~~GLqv~~  252 (349)
T d1gp6a_         203 GLEELLLQMK-INYYPKCPQPELALGVEAHTDVSALTFILH--NMVPGLQLFY  252 (349)
T ss_dssp             HHHHCEEEEE-EEEECCCSSTTTCCSEEEECCCSSEEEEEE--CSCCCEEEEE
T ss_pred             cccccceeee-ecccccccchhhccccccCCCCcceEEEec--cCCcceeeec
Confidence            31  223445 99999999 55 899999999999999999  8999999975
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure