Citrus Sinensis ID: 042538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
FAHGKEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQMEDHSMKACVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVNKHVQSRATSTSSRDNWSPQDDGIEVTLPCHPSKTPPRVKVDEYIDTVLCCPTTAARRRLPVFTKICPEY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHccccccccccccccccEcccccccccccccccEEcccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHcHHHcEcccccccccccccHHHHccccc
Coil and Loop (DISEMBL)
fahgkeelrstlfpttknkseaQICKSfttgsciygskcrfIHQVMTDSALVLTIQMEdhsmkacvcespvtpvtfkprltntaikpehtrKTTALVNKHVQsratstssrdnwspqddgievtlpchpsktpprvkvdeyidtvlccpttaarrrlpvftkicpey
Flexible Loop (DISEMBL)
fahgkeelrstlfpttknkseaqiCKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQMEDHSMKACVCEspvtpvtfkprltntaikpehtrkttalvnkhvqsratstssrdnwspqddGIEVtlpchpsktpprvkvdeyIDTVLCcpttaarrrlpvftkicpey
Low Complexity Region (SEG)
FAHGKEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQMEDHSMKACVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVNKHVQSRATSTSSRDNWSPQDDGIEVTLPCHPSKTPPRVKVDEYIDTVLCCPTTAARRRLPVFTKICPEY
Disordered region (IsUnstruct)
**********************QICKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQMEDHSMKACVCESPVTPVTFKPRLTN****************************************************RVKVDEYIDTVLCCPTTAARRRLPVFTKIC***
Disordered Region (DISOPRED)
FAHGKEELRSTL******KSEAQICKSFTTGSCIYGSKCRF*****************************************************************************************************DTVLCCPTTAARRRLPVFTKICPE*
Disordered Region (DISEMBL)
FAHGKEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQMEDHSMKACVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVN******************QDDGIEVTLPCHPSKTPPRVKVDEYIDTVLCCPTTAARRRLPVFTKICPEY
Disordered Region (DISPRO)
*******LRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQMEDHSMKACVCESPVTP***************************************NWSPQDDGIEVTLPCHPSKTPPRVKVDEYIDTVLCCPTTAARRRLPVFTKICPEY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FAHGKEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQMEDHSMKACVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVNKHVQSRATSTSSRDNWSPQDDGIEVTLPCHPSKTPPRVKVDEYIDTVLCCPTTAARRRLPVFTKICPEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q09436	467	Zinc finger protein mex-6	no	no	0.491	0.175	0.329	0.0001
Q9XUB2	468	Zinc finger protein mex-5	no	no	0.257	0.091	0.458	0.0002

>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3 SV=3

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 12/94 (12%)

Query: 1   FAHGKEELRSTLFPTT--KNKSEAQICKSFTTGS---CIYGSKCRFIHQVMTDSALVLTI 55
           FAHG +ELR++  PT    NK + ++CK+F  G    C YG +C F+H   T+   +   
Sbjct: 297 FAHGLKELRASDIPTRYPNNKYKTKLCKNFARGGSGVCPYGLRCEFVHPSDTEFQNIPPY 356

Query: 56  Q---MEDHSMKACVCESPVTPVTFKPRLTNTAIK 86
           Q   +E+H     + E  V    ++PR  +T+ K
Sbjct: 357 QRKMVEEHD---SIPEDYVV-ARYQPRFMHTSGK 386

Functions with mex-5 to affect embryonic viability, establish soma germline asymmetry in embryos and establish pie-1, mex-1, and pos-1 asymmetry in embryos. Also affects formation of intestinal cells.
Caenorhabditis elegans (taxid: 6239)

>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 5/48 (10%)

Query: 1   FAHGKEELRSTLFPTT--KNKSEAQICKSFT---TGSCIYGSKCRFIH 43
           FAHG +ELR+T  P     NK + ++CK+F    TG C YG +C F+H
Sbjct: 294 FAHGLKELRATDAPARYPNNKYKTKLCKNFARGGTGFCPYGLRCEFVH 341

Functions with mex-6 to affect embryonic viability, establish soma germline asymmetry in embryos and establish pie-1, mex-1, and pos-1 asymmetry in embryos. Also affects formation of intestinal cells.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
224082280	181	predicted protein [Populus trichocarpa]	0.958	0.883	0.404	6e-20
147795077	300	hypothetical protein VITISV_026075 [Viti	0.790	0.44	0.383	5e-17
225438499	126	PREDICTED: uncharacterized protein LOC10	0.700	0.928	0.370	7e-13
449462413	312	PREDICTED: uncharacterized protein LOC10	0.886	0.474	0.291	1e-08
255577092	353	conserved hypothetical protein [Ricinus	0.928	0.439	0.287	6e-05
326433056	888	hypothetical protein PTSG_01604 [Salping	0.281	0.052	0.471	0.0001
255571879	85	conserved hypothetical protein [Ricinus	0.377	0.741	0.428	0.0001
424512981	524	predicted protein [Bathycoccus prasinos]	0.341	0.108	0.377	0.0002
224066841	347	predicted protein [Populus trichocarpa]	0.754	0.363	0.307	0.0002
440798766	740	zinc finger domain containing protein [A	0.293	0.066	0.471	0.0002

>gi|224082280|ref|XP_002306630.1| predicted protein [Populus trichocarpa] gi|222856079|gb|EEE93626.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 92/183 (50%), Gaps = 23/183 (12%)

Query: 1   FAHGKEELRSTLFPTTKNKSEAQICKSFTTG--SCIYGSKCRFIHQVMTDSALVLTIQME 58
           FAHGKEEL  T FP  KNK+    C S+ T   S  Y  KCR +H  MT +A+    Q  
Sbjct: 3   FAHGKEELHPTHFPI-KNKAAVHTCNSYVTSPRSSPYVPKCRILHPAMTKAAVAAN-QTA 60

Query: 59  DHSMKACVCESPVT------------PVTFKPRLTNTAI--KPEHTRKTTALVNKHVQSR 104
              +      SPVT            P +       T I  +PEH  K++A  N    SR
Sbjct: 61  FSKIPGYTSISPVTISSEKFSKNSTTPFSTPDHFLRTYISTRPEHCNKSSA-ANIKSDSR 119

Query: 105 A--TSTSSRDNWSPQDDGIEVTLPCHPSKTPPRVKVDEYIDTVLCCPTTAARRRLPVFTK 162
              T+T S D WSPQDDGIE+ LP    K   R +VD YI +VL  P T  ++RLPVF++
Sbjct: 120 MVFTATISSDYWSPQDDGIEIALPHQTDKCISRAEVDAYIHSVLYGPAT--KKRLPVFSE 177

Query: 163 ICP 165
            CP
Sbjct: 178 FCP 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795077|emb|CAN60857.1| hypothetical protein VITISV_026075 [Vitis vinifera]

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 87/167 (52%), Gaps = 35/167 (20%)

Query: 1   FAHGKEELRSTLFPTTKNKSEAQICKSFT-TGSCIYGSKCRFIHQVMTDSALVLTIQMED 59
           FAHGKEELR   + + + + E  +CK F  TG+C YG +CRF HQ+ +   L+ T Q   
Sbjct: 161 FAHGKEELRPLRY-SMRTRPEGNVCKQFAVTGTCPYGPRCRFSHQIQS---LLSTTQQ-- 214

Query: 60  HSMKACVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVNKHVQSRATSTSSRDNWSPQDD 119
                                T +  +P+HT   T  +       AT T +  +WSP DD
Sbjct: 215 ---------------------TPSPSRPQHTAAXTPTIKT-----ATPTKTTADWSPMDD 248

Query: 120 GIEVTLPCHPSKTPP-RVKVDEYIDTVLCCPTTAARRRLPVFTKICP 165
           GIEV LP   ++ P  R +V+ YI++ L  PTT  RRRLPVF +ICP
Sbjct: 249 GIEVVLPGSSAEKPASRDEVNTYINSFLYGPTT-PRRRLPVFEEICP 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438499|ref|XP_002278745.1| PREDICTED: uncharacterized protein LOC100262912 [Vitis vinifera] gi|296082533|emb|CBI21538.3| unnamed protein product [Vitis vinifera]

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 34/151 (22%)

Query: 17  KNKSEAQICKSFT-TGSCIYGSKCRFIHQVMTDSALVLTIQMEDHSMKACVCESPVTPVT 75
           + + E  +CK F  TG+C YG +CRF HQ+    +L+ T Q                   
Sbjct: 2   RTRPEGNVCKQFAVTGTCPYGPRCRFSHQIQ---SLLSTTQQ------------------ 40

Query: 76  FKPRLTNTAIKPEHTRKTTALVNKHVQSRATSTSSRDNWSPQDDGIEVTLPCHPSKTPP- 134
                T +  +P+HT  TT  +       AT T +  +WSP DDGIEV LP   ++ P  
Sbjct: 41  -----TPSPSRPQHTAATTPTIKT-----ATPTKTTADWSPMDDGIEVVLPGSSAEKPAS 90

Query: 135 RVKVDEYIDTVLCCPTTAARRRLPVFTKICP 165
           R +V+ YI++ L  PTT  RRRLPVF +ICP
Sbjct: 91  RDEVNTYINSFLYGPTT-PRRRLPVFEEICP 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462413|ref|XP_004148935.1| PREDICTED: uncharacterized protein LOC101215865 [Cucumis sativus] gi|449506415|ref|XP_004162743.1| PREDICTED: uncharacterized LOC101215865 [Cucumis sativus]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 20/168 (11%)

Query: 17  KNKSEAQICKSF-TTGSCIYGSKCRFIHQ----------VMTDSALVLTIQMEDHSMKAC 65
           KN+  + IC+ +  +G+C +G+KC+F H           V T +    T   +  +  + 
Sbjct: 142 KNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLRPGRLPVRTKTKFSETYGSKFRNNHSL 201

Query: 66  VCESPVTPVTFKPRLTNTAIKPEHTRK----TTALVNKHVQSRAT--STSSRDNWSPQDD 119
              +  T       L +T  K E +++    T++ +  H  +  T  ST S  NWSP+DD
Sbjct: 202 TGIAATTTTQSNSNLVDTITKTELSKRGLTPTSSTLKGHTNNNPTLISTISIINWSPEDD 261

Query: 120 GIEVTLPCHPSKTPPRVKVDEYIDTVLCCPTTA-ARRRLPVFTKICPE 166
           GI++ +P   +++  R  V+++I  VL   TT   ++RLPVF +IC E
Sbjct: 262 GIKIAVPG--TESTKREDVNQHIHEVLYGSTTERTKKRLPVFVQICSE 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577092|ref|XP_002529430.1| conserved hypothetical protein [Ricinus communis] gi|223531107|gb|EEF32956.1| conserved hypothetical protein [Ricinus communis]

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 79/195 (40%), Gaps = 40/195 (20%)

Query: 1   FAHGKEELRSTLFPTTKN-KSEAQICKSFTTGSC-IYGSKCRFIHQVMTDSALVLTIQME 58
           FAHGKEELR    PT+ N K++ ++  SF + S   Y               +  T    
Sbjct: 168 FAHGKEELR----PTSSNMKNKPEVHPSFKSPSSRSYAQALASRSSSSPPPNMTETGAQT 223

Query: 59  DHSMKACVCESPVTPVT----------------------FKPRLTNTAIKPEHTRK---T 93
           D+ +      S  TP +                        P LTN    PE   K   T
Sbjct: 224 DNIIDESQYPSLTTPASPSQPPRSGKQRNLTGPKLPKDSLAPTLTN----PEELSKKIIT 279

Query: 94  TALVNKHVQSRA-TSTSSRDNWSPQDDGIEVTLPCHPSKTPPRVKVD--EYIDTVLCCPT 150
               ++ +  ++ T  ++   WSP DDGI+++LP          K D   +ID VL  PT
Sbjct: 280 PTPSDQEISKKSPTIYTNYQQWSPLDDGIDISLPGDTDTQSQSSKKDFEGHIDNVLYGPT 339

Query: 151 TAARRRLPVFTKICP 165
           T   +RLP F+K CP
Sbjct: 340 TG--KRLPAFSKFCP 352

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326433056|gb|EGD78626.1| hypothetical protein PTSG_01604 [Salpingoeca sp. ATCC 50818]

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 6/53 (11%)

Query: 1   FAHGKEELRSTLFPTTKN-KSEAQICKSF-TTGSCIYGSKCRFIHQVMTDSAL 51
           FAHG+EELR    P  ++ K + ++C++F TTG C YG +C FIH++  D+AL
Sbjct: 260 FAHGEEELR----PIQRHPKYKTELCRTFHTTGVCPYGPRCHFIHEIEKDAAL 308

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|255571879|ref|XP_002526882.1| conserved hypothetical protein [Ricinus communis] gi|223533781|gb|EEF35513.1| conserved hypothetical protein [Ricinus communis]

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 7/70 (10%)

Query: 99  KHVQSRATSTSSRDNWSPQDDGIEVTLPC--HPSKTPPRVKVDEYIDTVLCCPTTAARRR 156
           K V + A+   S  +W+P DD IEV LP   HP+ +    +VD YID VL     ++++R
Sbjct: 19  KKVVTSASGNFSDLSWTPMDDKIEVRLPGNKHPATSK---EVDAYIDKVLYI--KSSKKR 73

Query: 157 LPVFTKICPE 166
           L VFT+ICP+
Sbjct: 74  LSVFTEICPK 83

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|424512981|emb|CCO66565.1| predicted protein [Bathycoccus prasinos]

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 4/61 (6%)

Query: 1   FAHGKEELRSTLFPTTKNKSEAQICKSFTT-GSCIYGSKCRFIHQVMTDSALVLTIQMED 59
           FAHG++ELR  +      K + Q+C+++TT G C YG++CRFIH+ + +  ++ T+    
Sbjct: 349 FAHGRDELRCVV---RHPKYKTQVCRTYTTTGQCPYGNRCRFIHEKLPEKGVLGTLATNG 405

Query: 60  H 60
           H
Sbjct: 406 H 406

Source: Bathycoccus prasinos

Species: Bathycoccus prasinos

Genus: Bathycoccus

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|224066841|ref|XP_002302241.1| predicted protein [Populus trichocarpa] gi|222843967|gb|EEE81514.1| predicted protein [Populus trichocarpa]

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 14/140 (10%)

Query: 1   FAHGKEELRSTLFPTTKNKSEAQICKSFTTGS----CIYGSKCRFIHQVMTDSALV---- 52
           FAHGK+E   + F + KNK   Q CKS  T      C+   KCR +   MT++A+     
Sbjct: 118 FAHGKDEFHPSGF-SIKNKELVQTCKSHATSPRSSPCV--PKCRILPPAMTNAAVAAKQT 174

Query: 53  -LTIQMEDHSMKACVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVNKHVQSRATSTSSR 111
             +   E  S+   +  S  +       L+   I  +   +T ++ ++  +   T+T S 
Sbjct: 175 AFSTIPEYTSIGPTIITSEKSSKNKPISLSGQTIATKS--QTASIKSEDSRMDITTTVSS 232

Query: 112 DNWSPQDDGIEVTLPCHPSK 131
           D WSPQDDGI++ LP   +K
Sbjct: 233 DYWSPQDDGIDIALPHQTNK 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440798766|gb|ELR19831.1| zinc finger domain containing protein [Acanthamoeba castellanii str. Neff]

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 4/53 (7%)

Query: 1   FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMTDSALV 52
           FAHG++ELR  L      K + +ICK+F T G+C YG++CRFIH+   DS ++
Sbjct: 262 FAHGRKELRPVL---RHPKYKTEICKTFHTIGTCPYGTRCRFIHKRPGDSDII 311

Source: Acanthamoeba castellanii str. Neff

Species: Acanthamoeba castellanii

Genus: Acanthamoeba

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
WB|WBGene00003864	407	oma-1 [Caenorhabditis elegans	0.257	0.105	0.511	1.2e-05
UNIPROTKB|G5EC86	407	oma-1 "Protein OMA-1" [Caenorh	0.257	0.105	0.511	1.2e-05
WB|WBGene00003231	467	mex-6 [Caenorhabditis elegans	0.640	0.229	0.311	1.5e-05
WB|WBGene00004078	264	pos-1 [Caenorhabditis elegans	0.317	0.200	0.410	2.4e-05
WB|WBGene00013796	196	Y116A8C.19 [Caenorhabditis ele	0.371	0.316	0.349	2.8e-05
DICTYBASE|DDB_G0285973	437	DDB_G0285973 "Butyrate respons	0.239	0.091	0.568	2.8e-05
WB|WBGene00003388	367	moe-3 [Caenorhabditis elegans	0.754	0.343	0.288	9.7e-05
WB|WBGene00003865	393	oma-2 [Caenorhabditis elegans	0.257	0.109	0.488	0.00011
WB|WBGene00009539	203	F38C2.7 [Caenorhabditis elegan	0.335	0.275	0.396	0.00034
UNIPROTKB|Q7ZXW9	363	zfp36l2-A "Zinc finger protein	0.239	0.110	0.477	0.00035

WB|WBGene00003864 oma-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 118 (46.6 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query:     1 FAHGKEELRSTLF-PTTKNKSEAQICKSFTT-GSCIYGSKCRFIH 43
             FAHG+EELR T   P   NK + ++C  +TT G C YG +C FIH
Sbjct:   135 FAHGEEELRPTFVEPLQNNKYKTKLCDKYTTTGLCPYGKRCLFIH 179

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0048599 "oocyte development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0043186 "P granule" evidence=IDA

GO:0001556 "oocyte maturation" evidence=IGI

UNIPROTKB|G5EC86 oma-1 "Protein OMA-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 118 (46.6 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query:     1 FAHGKEELRSTLF-PTTKNKSEAQICKSFTT-GSCIYGSKCRFIH 43
             FAHG+EELR T   P   NK + ++C  +TT G C YG +C FIH
Sbjct:   135 FAHGEEELRPTFVEPLQNNKYKTKLCDKYTTTGLCPYGKRCLFIH 179

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00003231 mex-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 118 (46.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 38/122 (31%), Positives = 59/122 (48%)

Query:     1 FAHGKEELRSTLFPTT--KNKSEAQICKSFTTGS---CIYGSKCRFIHQVMTDSALVLTI 55
             FAHG +ELR++  PT    NK + ++CK+F  G    C YG +C F+H   T+   +   
Sbjct:   297 FAHGLKELRASDIPTRYPNNKYKTKLCKNFARGGSGVCPYGLRCEFVHPSDTEFQNIPPY 356

Query:    56 Q---MEDHSMKACVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVNKHVQSR--ATSTSS 110
             Q   +E+H     + E  V    ++PR  +T+ K     K T L  ++V       S + 
Sbjct:   357 QRKMVEEHDS---IPEDYVV-ARYQPRFMHTSGKATTPTKVT-LKQRNVAGSMMCLSNTG 411

Query:   111 RD 112
             RD
Sbjct:   412 RD 413

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0043186 "P granule" evidence=IDA

GO:0003730 "mRNA 3'-UTR binding" evidence=IDA

GO:0032880 "regulation of protein localization" evidence=IGI

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IPI

WB|WBGene00004078 pos-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 114 (45.2 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query:     1 FAHGKEELRSTLFPTTKN--KSEAQICKSFT-TGSCIYGSKCRFIHQVMTDSALVL 53
             FAHG  ELR  + P  +N  K +  +C  F+ TG+C YG++C+FIH+++  +A  L
Sbjct:   121 FAHGVHELRLPMNPRGRNHPKYKTVLCDKFSMTGNCKYGTRCQFIHKIVDGNAAKL 176

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0001708 "cell fate specification" evidence=IMP

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0043186 "P granule" evidence=IDA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0003727 "single-stranded RNA binding" evidence=IDA

GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;IPI

WB|WBGene00013796 Y116A8C.19 [Caenorhabditis elegans (taxid:6239)]

 Score = 111 (44.1 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query:     1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMTDSALVLTIQMED 59
             FAH   ELR T    T    +  +C  F TTG C YG++C+FIH+ +  ++   + +M D
Sbjct:   106 FAHSVHELRFTQAKKTHRNYKTVLCDKFSTTGYCKYGARCQFIHRALGSTSTTESAEMAD 165

Query:    60 HSM 62
               +
Sbjct:   166 FKL 168

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

DICTYBASE|DDB_G0285973 DDB_G0285973 "Butyrate response factor 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 116 (45.9 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 25/44 (56%), Positives = 32/44 (72%)

Query:     1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIH 43
             FAHG++ELRS +    K K+E   CK+F + GSC YGS+CRFIH
Sbjct:   218 FAHGRDELRSVM-RHPKYKTET--CKTFYSIGSCPYGSRCRFIH 258

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

WB|WBGene00003388 moe-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 112 (44.5 bits), Expect = 9.7e-05, P = 9.7e-05
 Identities = 39/135 (28%), Positives = 63/135 (46%)

Query:     1 FAHGKEELR-STLFPTTKNKSEAQICKSFTT-GSCIYGSKCRFIHQVMTDSALVLTIQME 58
             FAHG+EELR + L     NK + ++C  +TT G C YG +C FIH     +A +   ++ 
Sbjct:   153 FAHGEEELRPAKLESRQNNKYKTKLCDKYTTTGLCPYGKRCLFIHPDNQPNAYIRADKLY 212

Query:    59 DHSMKACVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVNKHVQSRATSTSSRDNW--SP 116
             + S +  + +     V  +    NT  +  + ++   +    +QS    +SS  +   SP
Sbjct:   213 EVSQRHALADLR-DHVESQIMTGNT--RNSYNQQPPPMGGLEMQSSPMKSSSDSSHMRSP 269

Query:   117 QDD-GIEVTLPCHPS 130
                   E T P HPS
Sbjct:   270 MAQMNCETTRP-HPS 283

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048599 "oocyte development" evidence=IMP

WB|WBGene00003865 oma-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 112 (44.5 bits), Expect = 0.00011, P = 0.00011
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query:     1 FAHGKEELRSTLFPTTKN-KSEAQICKSFTT-GSCIYGSKCRFIH 43
             FAHG+EELR +L    +N K   ++C  +TT G C YG +C FIH
Sbjct:   128 FAHGEEELRPSLIEARQNNKYRTKLCDKYTTTGLCPYGKRCLFIH 172

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048599 "oocyte development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0005813 "centrosome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043186 "P granule" evidence=IDA

GO:0001556 "oocyte maturation" evidence=IGI

WB|WBGene00009539 F38C2.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 104 (41.7 bits), Expect = 0.00034, P = 0.00034
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query:     1 FAHGKEELRSTLFPTTKNKS---EAQICKSF-TTGSCIYGSKCRFIHQVMTDSALVLTIQ 56
             FAH   ELR   FP TK      +  +C +F TTG C YG +C+FIH+ M  ++   + +
Sbjct:   111 FAHSVHELR---FPQTKRNHRNYKTVLCNNFSTTGHCKYGIRCQFIHRSMNSTSSNQSNK 167

Query:    57 MED 59
             ME+
Sbjct:   168 MEN 170

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q7ZXW9 zfp36l2-A "Zinc finger protein 36, C3H1 type-like 2-A" [Xenopus laevis (taxid:8355)]

 Score = 98 (39.6 bits), Expect = 0.00035, Sum P(2) = 0.00035
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query:     1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIH 43
             FAHG  ELRS    T   K + ++C++F T G C YG +C FIH
Sbjct:   154 FAHGFHELRSL---TRHPKYKTELCRTFHTIGFCPYGPRCHFIH 194

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0048793 "pronephros development" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.001
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	0.003

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 34.1 bits (79), Expect = 0.001
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 22 AQICKSFTTGSCIYGSKCRFIH 43
           ++CK F  G C  G +C+F H
Sbjct: 4  TELCKFFKRGYCPRGDRCKFAH 25

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 33.3 bits (77), Expect = 0.003
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 24 ICKSF-TTGSCIYGSKCRFIH 43
          +C+ F  TG+C YG +C+F H
Sbjct: 5  LCRFFSRTGTCKYGDRCKFAH 25

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.33
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.76
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.75
smart00356	27	ZnF_C3H1 zinc finger.	98.37
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	97.35
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	96.63
COG5152	259	Uncharacterized conserved protein, contains RING a	96.41
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	95.87
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	94.91
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	94.25
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	91.75
KOG2185	486	consensus Predicted RNA-processing protein, contai	90.23
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	87.48
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	87.24
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	84.67
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	81.76

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.33  E-value=5.2e-13  Score=112.91  Aligned_cols=51  Identities=47%  Similarity=0.772  Sum_probs=41.2

Q ss_pred             CCCCcccccCC---CCCCCCCcccccccccc-cccccCCCCCCeecCCCCChhHH
Q 042538            1 FAHGKEELRST---LFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMTDSAL   51 (167)
Q Consensus         1 FAHG~eELR~~---~~P~~knKYKTklCk~F-~tG~CPYG~RC~FiH~~~~~aa~   51 (167)
                      ||||.+|||..   ......++|||++|.+| .+|.|+||.||+|||+.++..+.
T Consensus       153 fah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~  207 (332)
T KOG1677|consen  153 FAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRAS  207 (332)
T ss_pred             hcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccccc
Confidence            89999999933   11222356999999999 88999999999999999866543

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.76  E-value=1e-09  Score=64.96  Aligned_cols=26  Identities=42%  Similarity=1.060  Sum_probs=21.3

Q ss_pred             ccccccccc-cccccCCCCCCeecCCC
Q 042538           20 SEAQICKSF-TTGSCIYGSKCRFIHQV   45 (167)
Q Consensus        20 YKTklCk~F-~tG~CPYG~RC~FiH~~   45 (167)
                      ||+++|+.| .+|.|+||++|.|+|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            689999999 88999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.75  E-value=3.4e-09  Score=94.59  Aligned_cols=45  Identities=33%  Similarity=0.636  Sum_probs=39.5

Q ss_pred             CCcccccCCCCCCCCCcccccccccc-cccccCCCCCCeecCCCCChhH
Q 042538            3 HGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMTDSA   50 (167)
Q Consensus         3 HG~eELR~~~~P~~knKYKTklCk~F-~tG~CPYG~RC~FiH~~~~~aa   50 (167)
                      ||..||....   .++.|||++|.+| ..|+|+||.||+|.|+.+.+..
T Consensus       258 HGlN~l~~k~---k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie  303 (351)
T COG5063         258 HGLNELKSKK---KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIE  303 (351)
T ss_pred             cccccccccc---cccccccCCccchhhcccCccccccccccCChhhcc
Confidence            9999999863   2567999999999 9999999999999999987643

>smart00356 ZnF_C3H1 zinc finger

Probab=98.37  E-value=1.9e-07  Score=53.16  Aligned_cols=26  Identities=38%  Similarity=1.055  Sum_probs=24.2

Q ss_pred             ccccccccccccccCCCCCCeecCCC
Q 042538           20 SEAQICKSFTTGSCIYGSKCRFIHQV   45 (167)
Q Consensus        20 YKTklCk~F~tG~CPYG~RC~FiH~~   45 (167)
                      +|+.+|+.|.+|.|++|.+|+|+|..
T Consensus         2 ~k~~~C~~~~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFFKRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence            78999999999999999999999973

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=97.35  E-value=0.00011  Score=62.47  Aligned_cols=33  Identities=33%  Similarity=0.878  Sum_probs=30.0

Q ss_pred             CCcccccccccc-cccccCC-CCCCeecCCCCChh
Q 042538           17 KNKSEAQICKSF-TTGSCIY-GSKCRFIHQVMTDS   49 (167)
Q Consensus        17 knKYKTklCk~F-~tG~CPY-G~RC~FiH~~~~~a   49 (167)
                      ...|||.+|..| .+|.|.| |.+|+|.|+.....
T Consensus       127 p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r  161 (332)
T KOG1677|consen  127 PERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELR  161 (332)
T ss_pred             cccccCCcceeeecCccccccCchhhhcCCccccc
Confidence            357999999999 9999999 99999999998765

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=96.63  E-value=0.0011  Score=59.99  Aligned_cols=46  Identities=30%  Similarity=0.475  Sum_probs=40.3

Q ss_pred             CCCCcccccCCC-CCCCCCcccccccccc-cccccCCCCCCeecCCCCChhH
Q 042538            1 FAHGKEELRSTL-FPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMTDSA   50 (167)
Q Consensus         1 FAHG~eELR~~~-~P~~knKYKTklCk~F-~tG~CPYG~RC~FiH~~~~~aa   50 (167)
                      |||...+++-.. |+    ||||+-|..| ..|+|||+.||.|+|-.-++.+
T Consensus       135 fahs~~issl~~~~~----K~kt~slev~in~~~vp~s~~~~~~slP~t~~~  182 (351)
T COG5063         135 FAHSKAISSLAQTHP----KYKTESLEVFINPGYVPYSKRCCFISLPLTDIN  182 (351)
T ss_pred             CCCccccccccccCc----cccccceeEEecCCccccccccccccccccccC
Confidence            899999998876 44    5999999999 9999999999999999887643

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.41  E-value=0.0013  Score=56.99  Aligned_cols=37  Identities=30%  Similarity=0.680  Sum_probs=28.7

Q ss_pred             ccccccc-cccccCCCCCCeecCCCCChhHH-Hhhcccc
Q 042538           22 AQICKSF-TTGSCIYGSKCRFIHQVMTDSAL-VLTIQME   58 (167)
Q Consensus        22 TklCk~F-~tG~CPYG~RC~FiH~~~~~aa~-~~~~q~e   58 (167)
                      -.+|+.| .+|+|-||+.|.|+|.-..-.+. .+.+-|.
T Consensus       141 pdVCKdyk~TGYCGYGDsCKflH~R~D~KtGWkLn~EWn  179 (259)
T COG5152         141 PDVCKDYKETGYCGYGDSCKFLHDRSDFKTGWKLNQEWN  179 (259)
T ss_pred             cccccchhhcccccCCchhhhhhhhhhhhcccccchhhc
Confidence            3589999 99999999999999987643322 5556664

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=95.87  E-value=0.0056  Score=58.08  Aligned_cols=50  Identities=32%  Similarity=0.586  Sum_probs=40.2

Q ss_pred             CCC-CcccccCCCCCCCCCcccccccccccccccCCCCCCeecCCCCChhHHHh
Q 042538            1 FAH-GKEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQVMTDSALVL   53 (167)
Q Consensus         1 FAH-G~eELR~~~~P~~knKYKTklCk~F~tG~CPYG~RC~FiH~~~~~aa~~~   53 (167)
                      ||| |+..-|..  |+ |.+|....|=.|..|.|.=|+-|+|.|+.-+.-++-+
T Consensus       217 f~HpgEkARRRD--PR-kyhYs~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa  267 (528)
T KOG1595|consen  217 FAHPGEKARRRD--PR-KYHYSSTPCPEFRKGSCERGDSCEYAHGVFECWLHPA  267 (528)
T ss_pred             ccCCCcccccCC--cc-cccccCccCcccccCCCCCCCccccccceehhhcCHH
Confidence            889 88877765  55 7889999999997799999999999999877554433

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=94.91  E-value=0.016  Score=32.07  Aligned_cols=19  Identities=37%  Similarity=0.767  Sum_probs=15.4

Q ss_pred             ccccccccccCCCCCCeecCC
Q 042538           24 ICKSFTTGSCIYGSKCRFIHQ   44 (167)
Q Consensus        24 lCk~F~tG~CPYG~RC~FiH~   44 (167)
                      +|+.|..  |++|+.|.|+|+
T Consensus         1 ~Ck~~~~--C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN--CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC--CCCCCcCccCCc
Confidence            4785533  999999999996

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=94.25  E-value=0.054  Score=51.61  Aligned_cols=40  Identities=30%  Similarity=0.459  Sum_probs=33.4

Q ss_pred             CCCCcccccCCCCCCCCCcccccccccccccccCCCCCCeecCCCCCh
Q 042538            1 FAHGKEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQVMTD   48 (167)
Q Consensus         1 FAHG~eELR~~~~P~~knKYKTklCk~F~tG~CPYG~RC~FiH~~~~~   48 (167)
                      ||||.=|-.-  ||-   .|||++||.=  |+|+- .=|-|+|..+.-
T Consensus       255 yaHgvfEcwL--HPa---~YRT~~CkDg--~~C~R-rvCfFAH~~eqL  294 (528)
T KOG1595|consen  255 YAHGVFECWL--HPA---RYRTRKCKDG--GYCPR-RVCFFAHSPEQL  294 (528)
T ss_pred             cccceehhhc--CHH---HhccccccCC--CCCcc-ceEeeecChHHh
Confidence            8999988553  564   4999999986  99999 999999998753

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.75  E-value=0.05  Score=48.96  Aligned_cols=58  Identities=28%  Similarity=0.547  Sum_probs=36.0

Q ss_pred             ccccccccc-cccccCCCCCCeecCCCCChhH-HHhhccccccccCCccccCCCcccccC
Q 042538           20 SEAQICKSF-TTGSCIYGSKCRFIHQVMTDSA-LVLTIQMEDHSMKACVCESPVTPVTFK   77 (167)
Q Consensus        20 YKTklCk~F-~tG~CPYG~RC~FiH~~~~~aa-~~~~~q~e~s~~p~~~~~sp~~~~~~~   77 (167)
                      |--.+|+.| +||+|-||.-|-|+|.-..=-+ -.+..+|+.+.=.++......-.|.|+
T Consensus       184 ~qpDicKdykeTgycg~gdSckFlh~r~DyK~GWqi~~e~d~~ke~~~~~~~D~~~~Pf~  243 (313)
T KOG1813|consen  184 YQPDICKDYKETGYCGYGDSCKFLHDRSDYKAGWQIEFEWDSAKEKKRVKIEDIELLPFK  243 (313)
T ss_pred             cCchhhhhhHhhCcccccchhhhhhhhhhccccceeehhhhccccccceecCCcccCCcc
Confidence            455699999 9999999999999998753211 133456665543333333333333333

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=90.23  E-value=0.12  Score=48.66  Aligned_cols=39  Identities=31%  Similarity=0.541  Sum_probs=29.4

Q ss_pred             cccccccccccccCCCCCCeecCCCCChhHHHh--hcccccc
Q 042538           21 EAQICKSFTTGSCIYGSKCRFIHQVMTDSALVL--TIQMEDH   60 (167)
Q Consensus        21 KTklCk~F~tG~CPYG~RC~FiH~~~~~aa~~~--~~q~e~s   60 (167)
                      -.++|+.|..|.|.+|..|+|.|+..- .+..+  -|+.++|
T Consensus       139 sMkpC~ffLeg~CRF~enCRfSHG~~V-~lsslr~yq~pD~s  179 (486)
T KOG2185|consen  139 SMKPCKFFLEGRCRFGENCRFSHGLDV-PLSSLRNYQQPDWS  179 (486)
T ss_pred             hhccchHhhccccccCcccccccCccc-chhhcccCCCccHH
Confidence            457999999999999999999999863 22222  2556666

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=87.48  E-value=0.17  Score=44.95  Aligned_cols=53  Identities=40%  Similarity=0.702  Sum_probs=36.9

Q ss_pred             CCCCcccccCCCCC--------------CCCCcc--cccccccc----ccc------ccCCC-CCCeecCCCCChhHHHh
Q 042538            1 FAHGKEELRSTLFP--------------TTKNKS--EAQICKSF----TTG------SCIYG-SKCRFIHQVMTDSALVL   53 (167)
Q Consensus         1 FAHG~eELR~~~~P--------------~~knKY--KTklCk~F----~tG------~CPYG-~RC~FiH~~~~~aa~~~   53 (167)
                      ||||.+|-|...-|              ..+..+  --++|+-|    .+|      .||.| .||.++|......+++.
T Consensus       104 F~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~CPng~~~C~y~H~Lp~GyVLsr  183 (299)
T COG5252         104 FAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTCPNGNMRCSYIHKLPDGYVLSR  183 (299)
T ss_pred             hhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeCCCCCceeeeeeccCccceecc
Confidence            89999998876422              211111  12589988    344      79998 69999999988766554

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=87.24  E-value=0.19  Score=45.69  Aligned_cols=26  Identities=27%  Similarity=0.853  Sum_probs=24.0

Q ss_pred             ccccccccccccCCCCC-CeecCCCCC
Q 042538           22 AQICKSFTTGSCIYGSK-CRFIHQVMT   47 (167)
Q Consensus        22 TklCk~F~tG~CPYG~R-C~FiH~~~~   47 (167)
                      -++|+.|..|.|.-|+| |.|.|+.+.
T Consensus        37 ~eVCReF~rn~C~R~d~~CkfaHP~~~   63 (331)
T KOG2494|consen   37 LEVCREFLRNTCSRGDRECKFAHPPKN   63 (331)
T ss_pred             HHHHHHHHhccccCCCccccccCCCCC
Confidence            36999999999999999 999999984

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.67  E-value=0.41  Score=43.41  Aligned_cols=25  Identities=36%  Similarity=0.946  Sum_probs=23.5

Q ss_pred             cccccccccccCCCCCCeecCCCCC
Q 042538           23 QICKSFTTGSCIYGSKCRFIHQVMT   47 (167)
Q Consensus        23 klCk~F~tG~CPYG~RC~FiH~~~~   47 (167)
                      .+|+.|..|.|.||.+|+|.|....
T Consensus         9 tic~~~~~g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQKGNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhcccccccccceeeeeccCch
Confidence            6999999999999999999999874

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=81.76  E-value=0.57  Score=41.42  Aligned_cols=28  Identities=29%  Similarity=0.636  Sum_probs=24.6

Q ss_pred             ccccccccccccccCCCCCCeecCCCCC
Q 042538           20 SEAQICKSFTTGSCIYGSKCRFIHQVMT   47 (167)
Q Consensus        20 YKTklCk~F~tG~CPYG~RC~FiH~~~~   47 (167)
                      ++.-.|..|..+.|++|..|.|+|.-+-
T Consensus       150 ~rea~C~~~e~~~C~rG~~CnFmH~k~~  177 (260)
T KOG2202|consen  150 FREAICGQFERTECSRGGACNFMHVKRL  177 (260)
T ss_pred             hhhhhhcccccccCCCCCcCcchhhhhh
Confidence            6778999996669999999999998853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	6e-05

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 38.8 bits (90), Expect = 6e-05
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 1  FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIH 43
          FAHG  ELR             ++C  F   G C YGS+C FIH
Sbjct: 32 FAHGLGELRQANRHPKYKT---ELCHKFKLQGRCPYGSRCHFIH 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.22
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	98.72
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.45
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	97.68
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	97.55
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	97.38
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	97.23
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	97.14
2rhk_C	72	Cleavage and polyadenylation specificity factor su	96.75
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	96.52
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	96.36
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	95.92
2rhk_C	72	Cleavage and polyadenylation specificity factor su	95.56
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	94.49
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	94.24
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	92.75
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	88.89
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	86.22
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	85.66
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	80.83

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.22  E-value=1.5e-12  Score=89.15  Aligned_cols=44  Identities=43%  Similarity=0.879  Sum_probs=10.4

Q ss_pred             CCCCcccccCCCCCCCCCcccccccccc-cccccCCCCCCeecCCCCC
Q 042538            1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMT   47 (167)
Q Consensus         1 FAHG~eELR~~~~P~~knKYKTklCk~F-~tG~CPYG~RC~FiH~~~~   47 (167)
                      |||+.+|||...   .+++|||++|+.| ..|.|+||.+|+|+|+..+
T Consensus        32 f~H~~~e~~~~~---~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           32 FAHGLGELRQAN---RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             SCSSSCCGGGTC------------------------------------
T ss_pred             CCCCChhhcccc---ccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            899999999764   1335999999999 8999999999999998765

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=98.72  E-value=5.3e-09  Score=71.41  Aligned_cols=36  Identities=31%  Similarity=0.790  Sum_probs=30.7

Q ss_pred             CCCCCCcccccccccc-cccccCCCCCCeecCCCCCh
Q 042538           13 FPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMTD   48 (167)
Q Consensus        13 ~P~~knKYKTklCk~F-~tG~CPYG~RC~FiH~~~~~   48 (167)
                      +|..+.+|||++|+.| .+|.|+||++|+|+|+..+.
T Consensus         3 ~~~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~   39 (77)
T 1m9o_A            3 HMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGEL   39 (77)
T ss_dssp             -CCCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred             CCCCCCCccchhCHHhhhCCCcCCCCCccCCCCChhh
Confidence            3445678999999999 79999999999999998753

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=3.6e-08  Score=69.94  Aligned_cols=29  Identities=28%  Similarity=0.652  Sum_probs=25.8

Q ss_pred             ccccccccccccccCCCCCCeecCCCCCh
Q 042538           20 SEAQICKSFTTGSCIYGSKCRFIHQVMTD   48 (167)
Q Consensus        20 YKTklCk~F~tG~CPYG~RC~FiH~~~~~   48 (167)
                      .|++||++|..|.|+||++|+|+|+..+-
T Consensus        18 ~k~~LC~~~~~G~C~~G~~C~FAHG~~EL   46 (69)
T 2d9m_A           18 GYFSICDRYMNGTCPEGNSCKFAHGNAEL   46 (69)
T ss_dssp             SCCSBCHHHHHSCCSSCSSCSSBSSHHHH
T ss_pred             CCcccCcccCcCCCCCCCccCCcCCHHHH
Confidence            46699999988999999999999998754

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=97.68  E-value=1.5e-05  Score=58.17  Aligned_cols=25  Identities=28%  Similarity=0.820  Sum_probs=16.0

Q ss_pred             ccccccccccccccCCCCCCeecCC
Q 042538           20 SEAQICKSFTTGSCIYGSKCRFIHQ   44 (167)
Q Consensus        20 YKTklCk~F~tG~CPYG~RC~FiH~   44 (167)
                      +|+.+|+.|..|.|.||++|.|+|+
T Consensus        11 ~k~~lC~~f~~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A           11 KKRELCKFYITGFCARAENCPYMHG   35 (98)
T ss_dssp             CCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             CCCccCcccccCcCCCCCCCCCCCC
Confidence            5666666665566666666666665

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=97.55  E-value=2.6e-05  Score=56.94  Aligned_cols=28  Identities=43%  Similarity=0.889  Sum_probs=24.9

Q ss_pred             ccccccc-cccccCCCCCCeecCCCCChh
Q 042538           22 AQICKSF-TTGSCIYGSKCRFIHQVMTDS   49 (167)
Q Consensus        22 TklCk~F-~tG~CPYG~RC~FiH~~~~~a   49 (167)
                      +.+|+.| ..|.|+||.+|+|+|......
T Consensus        36 ~~~C~~f~~~G~C~~G~~C~f~H~~~~~~   64 (98)
T 2cqe_A           36 DFPCKLYHTTGNCINGDDCMFSHDPLTEE   64 (98)
T ss_dssp             SSBCSHHHHTSCCSSCTTCSSBCCCCCHH
T ss_pred             CCcCcCcccCCcCCCCCCCcccCCCCccc
Confidence            6899999 899999999999999976543

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=97.38  E-value=3.4e-05  Score=51.99  Aligned_cols=28  Identities=29%  Similarity=0.686  Sum_probs=26.2

Q ss_pred             cccccccccc-cccccCCCCCCeecCCCC
Q 042538           19 KSEAQICKSF-TTGSCIYGSKCRFIHQVM   46 (167)
Q Consensus        19 KYKTklCk~F-~tG~CPYG~RC~FiH~~~   46 (167)
                      ..++.+|++| +.|.||+|.+|.|.|+.+
T Consensus        17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             ccccchhhhccccccCCCCCCCCccccCC
Confidence            3689999999 999999999999999987

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.23  E-value=8.6e-05  Score=51.56  Aligned_cols=29  Identities=28%  Similarity=0.738  Sum_probs=26.0

Q ss_pred             cccccccccccccccCCCCCCeecCCCCC
Q 042538           19 KSEAQICKSFTTGSCIYGSKCRFIHQVMT   47 (167)
Q Consensus        19 KYKTklCk~F~tG~CPYG~RC~FiH~~~~   47 (167)
                      .+|+++|+.|..|.|.+|+.|.|+|+...
T Consensus         7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~   35 (77)
T 2d9n_A            7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDM   35 (77)
T ss_dssp             CCTTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred             CCcceeCHhHccCcCCCCCCCCCcccccc
Confidence            38999999996699999999999999864

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=97.14  E-value=0.00017  Score=49.28  Aligned_cols=40  Identities=25%  Similarity=0.617  Sum_probs=26.0

Q ss_pred             CCCCcccccCCCCCCCCCcccccccccccccccCCCCCCeecCCCC
Q 042538            1 FAHGKEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQVM   46 (167)
Q Consensus         1 FAHG~eELR~~~~P~~knKYKTklCk~F~tG~CPYG~RC~FiH~~~   46 (167)
                      |||..+++....     ...++.+|+.|..|.|..| .|.|+|...
T Consensus        26 f~H~~~~~~~~~-----~~~~~~vC~~flkG~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A           26 FAHPADSTMIDT-----NDNTVTVCMDYIKGRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             SBCCCTTSCCBT-----TTTEEEBCHHHHTTCCCCT-TCCSBCCCH
T ss_pred             CccCcccccccc-----cCCcceeccccCcCCCCCC-CcCeeCCHH
Confidence            667666654321     1256777777766777777 777777653

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=96.75  E-value=0.00028  Score=48.89  Aligned_cols=29  Identities=28%  Similarity=0.738  Sum_probs=25.4

Q ss_pred             cccccccccccccccCCCCCCeecCCCCC
Q 042538           19 KSEAQICKSFTTGSCIYGSKCRFIHQVMT   47 (167)
Q Consensus        19 KYKTklCk~F~tG~CPYG~RC~FiH~~~~   47 (167)
                      ..|+++|+.|..|.|.+|+.|.|+|+...
T Consensus        13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~~   41 (72)
T 2rhk_C           13 GEKTVVCKHWLRGLCKKGDQCEFLHEYDM   41 (72)
T ss_dssp             CCCCSBCHHHHTTCCCCGGGSSSBCSCCT
T ss_pred             CCcCeeCHHHhcCCCCCCCCCCCcccccc
Confidence            36889999996699999999999999753

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.52  E-value=0.00098  Score=48.79  Aligned_cols=40  Identities=23%  Similarity=0.598  Sum_probs=28.7

Q ss_pred             CCCCcccccCCCCCCCCCcccccccccccccccCCCCCCeecCCCC
Q 042538            1 FAHGKEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQVM   46 (167)
Q Consensus         1 FAHG~eELR~~~~P~~knKYKTklCk~F~tG~CPYG~RC~FiH~~~   46 (167)
                      |+|..++++....     ..++.+|..|..|.|.+| .|.|.|...
T Consensus        40 FsH~~~~~~~~~~-----~~~~~vC~~flkG~C~r~-~C~y~H~~~   79 (98)
T 2e5s_A           40 FAHPADSTMIDTS-----DNTVTVCMDYIKGRCMRE-KCKYFHPPA   79 (98)
T ss_dssp             SBCCSSCCSCCTT-----TCEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred             CcCCchhcccccc-----CCccccchhhccCCCCCC-CcCccCChH
Confidence            6777776653211     257778888877888888 888888775

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.36  E-value=0.0013  Score=45.55  Aligned_cols=26  Identities=23%  Similarity=0.571  Sum_probs=22.2

Q ss_pred             cccccccc-cccccCCCCCCeecCCCCC
Q 042538           21 EAQICKSF-TTGSCIYGSKCRFIHQVMT   47 (167)
Q Consensus        21 KTklCk~F-~tG~CPYG~RC~FiH~~~~   47 (167)
                      ++.+|+.| ..|.|. |++|.|+|....
T Consensus        37 ~~~~C~~f~~~G~C~-~~~C~f~H~~~~   63 (77)
T 2d9n_A           37 KMPECYFYSKFGECS-NKECPFLHIDPE   63 (77)
T ss_dssp             TSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred             cCCCCcccCCCCccC-CCCeeccCCCcc
Confidence            45689999 559999 999999999864

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=95.92  E-value=0.0022  Score=43.78  Aligned_cols=28  Identities=29%  Similarity=0.860  Sum_probs=24.9

Q ss_pred             ccccccccccccccCCCC-CCeecCCCCC
Q 042538           20 SEAQICKSFTTGSCIYGS-KCRFIHQVMT   47 (167)
Q Consensus        20 YKTklCk~F~tG~CPYG~-RC~FiH~~~~   47 (167)
                      .|..+|+.|..|.|..|+ .|.|+|+...
T Consensus         4 ~k~~vC~~f~~G~C~rg~~~C~f~H~~~~   32 (70)
T 3d2q_A            4 DRLEVCREYQRGNCNRGENDCRFAHPADS   32 (70)
T ss_dssp             CEEEBCHHHHTTCCSSCTTTCSSBCCCTT
T ss_pred             ccchhCHHHhcCCCCCCCCCCCCccCccc
Confidence            467899999999999999 6999999864

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=95.56  E-value=0.0043  Score=42.83  Aligned_cols=26  Identities=23%  Similarity=0.600  Sum_probs=22.6

Q ss_pred             cccccccccc-cccCCCCCCeecCCCCC
Q 042538           21 EAQICKSFTT-GSCIYGSKCRFIHQVMT   47 (167)
Q Consensus        21 KTklCk~F~t-G~CPYG~RC~FiH~~~~   47 (167)
                      ++.+|+.|.. |.|.+ ++|.|.|...+
T Consensus        43 ~~~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           43 KMSECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence            5679999954 99999 99999998764

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.49  E-value=0.0042  Score=45.40  Aligned_cols=29  Identities=31%  Similarity=0.886  Sum_probs=25.8

Q ss_pred             cccccccccccccccCCCC-CCeecCCCCC
Q 042538           19 KSEAQICKSFTTGSCIYGS-KCRFIHQVMT   47 (167)
Q Consensus        19 KYKTklCk~F~tG~CPYG~-RC~FiH~~~~   47 (167)
                      ..|..+|+.|..|.|..|+ .|.|+|+...
T Consensus        17 ~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~   46 (98)
T 2e5s_A           17 TDKLEVCREFQRGNCARGETDCRFAHPADS   46 (98)
T ss_dssp             SSEEEBCSHHHHTCCSSHHHHCSSBCCSSC
T ss_pred             hhhhhhhHHHhcCcCCCCCCCCCCcCCchh
Confidence            3688999999779999999 8999999864

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=94.24  E-value=0.021  Score=40.63  Aligned_cols=28  Identities=25%  Similarity=0.762  Sum_probs=24.9

Q ss_pred             ccccccccccccccCCCC-CCeecCCCCC
Q 042538           20 SEAQICKSFTTGSCIYGS-KCRFIHQVMT   47 (167)
Q Consensus        20 YKTklCk~F~tG~CPYG~-RC~FiH~~~~   47 (167)
                      .|..+|+.|..|.|.-|+ .|.|+|+...
T Consensus         7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~~   35 (83)
T 3d2n_A            7 LTLEVCREFQRGTCSRPDTECKFAHPSKS   35 (83)
T ss_dssp             GEEEBCTTGGGTCCCSCTTTCSSBCCCTT
T ss_pred             ccchhcHHHhcCCCCCCCCCCCCcCCCcc
Confidence            577899999779999996 9999999864

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=92.75  E-value=0.032  Score=40.40  Aligned_cols=28  Identities=25%  Similarity=0.776  Sum_probs=25.1

Q ss_pred             ccccccccccccccCCCC-CCeecCCCCC
Q 042538           20 SEAQICKSFTTGSCIYGS-KCRFIHQVMT   47 (167)
Q Consensus        20 YKTklCk~F~tG~CPYG~-RC~FiH~~~~   47 (167)
                      -+..+|+.|..|.|.-|+ .|.|+|+...
T Consensus        15 ~~~~VCrdFlrG~C~r~d~~CrfsH~~~~   43 (89)
T 2rpp_A           15 LTLEVCRQFQRGTCSRSDEECKFAHPPKS   43 (89)
T ss_dssp             SEECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred             chhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence            467899999779999998 9999999875

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=88.89  E-value=0.13  Score=36.54  Aligned_cols=26  Identities=19%  Similarity=0.525  Sum_probs=23.4

Q ss_pred             ccccccccccccccCCCCCCeecCCCC
Q 042538           20 SEAQICKSFTTGSCIYGSKCRFIHQVM   46 (167)
Q Consensus        20 YKTklCk~F~tG~CPYG~RC~FiH~~~   46 (167)
                      -+...|..|..|.|.-+ .|.|.|+..
T Consensus        41 ~~~~vC~dflkG~C~r~-~C~y~H~~~   66 (83)
T 3d2n_A           41 GRVIACFDSLKGRCSRE-NCKYLHPPP   66 (83)
T ss_dssp             TEEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred             CceeehhHhhhccccCC-CcceeCChH
Confidence            46789999988999999 899999986

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.22  E-value=0.11  Score=36.51  Aligned_cols=26  Identities=27%  Similarity=0.348  Sum_probs=17.2

Q ss_pred             CCCCcccccCCCCCCCCCcccccccccc
Q 042538            1 FAHGKEELRSTLFPTTKNKSEAQICKSF   28 (167)
Q Consensus         1 FAHG~eELR~~~~P~~knKYKTklCk~F   28 (167)
                      ||||.+|||.....  ..-.|+++|+-.
T Consensus        39 FAHG~~ELr~~~~R--~~~~k~k~~~Ar   64 (69)
T 2d9m_A           39 FAHGNAELHEWEER--RDALKMKLNKAS   64 (69)
T ss_dssp             SBSSHHHHHHHHHH--HHHHTTTCCSCC
T ss_pred             CcCCHHHHhhHHHH--HHHHHHHHHHHh
Confidence            99999999974310  122567777654

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=85.66  E-value=0.16  Score=41.89  Aligned_cols=28  Identities=29%  Similarity=0.819  Sum_probs=24.1

Q ss_pred             cccccccccccCCCCCCeecCCCCChhH
Q 042538           23 QICKSFTTGSCIYGSKCRFIHQVMTDSA   50 (167)
Q Consensus        23 klCk~F~tG~CPYG~RC~FiH~~~~~aa   50 (167)
                      .+|--|..|.|.+|..|.|+|...+...
T Consensus        71 ~~C~ffakG~C~~G~~C~y~H~lPt~~d   98 (240)
T 3u1l_A           71 FFCLFFAKGMCCLGPKCEYLHHIPDEED   98 (240)
T ss_dssp             SBCHHHHTTCCSCGGGCSSBBSCCCHHH
T ss_pred             eEcCccccCCCCCCCCCCccCCCCCccc
Confidence            4899997799999999999999877543

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=80.83  E-value=0.69  Score=33.29  Aligned_cols=25  Identities=20%  Similarity=0.565  Sum_probs=22.9

Q ss_pred             cccccccccccccCCCCCCeecCCCC
Q 042538           21 EAQICKSFTTGSCIYGSKCRFIHQVM   46 (167)
Q Consensus        21 KTklCk~F~tG~CPYG~RC~FiH~~~   46 (167)
                      +...|..|..|.|.-+ .|.|+|+..
T Consensus        50 ~~~vC~dflkG~C~r~-~Cky~H~~~   74 (89)
T 2rpp_A           50 RVIACFDSLKGRCSRE-NCKYLHPPT   74 (89)
T ss_dssp             BEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred             ceeeehhhhhCcCCCC-CcceecCHH
Confidence            6789999988999999 899999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.001
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	0.002
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.002

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.2 bits (76), Expect = 0.001
 Identities = 11/30 (36%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 15 TTKNKSEAQICKSF-TTGSCIYGSKCRFIH 43
          TT ++ + ++C+++  +G C YG+KC+F H
Sbjct: 2  TTSSRYKTELCRTYSESGRCRYGAKCQFAH 31

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.002
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 23 QICKSF-TTGSCIYGSKCRFIH 43
          ++C++F T G C YG +C FIH
Sbjct: 9  ELCRTFHTIGFCPYGPRCHFIH 30

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.4 bits (74), Expect = 0.002
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)

Query: 15 TTKNKSEAQICKSF-TTGSCIYGSKCRFIH 43
          +T+ K+E  +C+ F  +G+C YG KC+F H
Sbjct: 1  STRYKTE--LCRPFEESGTCKYGEKCQFAH 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.42
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.27
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.27
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	96.05
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	93.35
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	91.48

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=9.1e-15  Score=89.74  Aligned_cols=30  Identities=40%  Similarity=0.980  Sum_probs=27.6

Q ss_pred             Ccccccccccc-cccccCCCCCCeecCCCCC
Q 042538           18 NKSEAQICKSF-TTGSCIYGSKCRFIHQVMT   47 (167)
Q Consensus        18 nKYKTklCk~F-~tG~CPYG~RC~FiH~~~~   47 (167)
                      +||||++|++| .+|.||||+||+|+|++++
T Consensus         4 pkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           4 PKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            45999999999 8999999999999999864

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.4e-13  Score=85.08  Aligned_cols=30  Identities=33%  Similarity=0.986  Sum_probs=27.9

Q ss_pred             Ccccccccccc-cccccCCCCCCeecCCCCC
Q 042538           18 NKSEAQICKSF-TTGSCIYGSKCRFIHQVMT   47 (167)
Q Consensus        18 nKYKTklCk~F-~tG~CPYG~RC~FiH~~~~   47 (167)
                      +||||++|+.| ..|.|+||++|+|+|++++
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~E   32 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHE   32 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGG
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHH
Confidence            57999999999 8899999999999999875

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=7.2e-13  Score=83.36  Aligned_cols=32  Identities=28%  Similarity=0.863  Sum_probs=29.0

Q ss_pred             CCcccccccccc-cccccCCCCCCeecCCCCCh
Q 042538           17 KNKSEAQICKSF-TTGSCIYGSKCRFIHQVMTD   48 (167)
Q Consensus        17 knKYKTklCk~F-~tG~CPYG~RC~FiH~~~~~   48 (167)
                      .++|||++|+.| ..|.|+||++|+|+|++.+-
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~EL   36 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGEL   36 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHh
Confidence            457999999999 88999999999999998763

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0013  Score=38.42  Aligned_cols=25  Identities=28%  Similarity=0.780  Sum_probs=22.9

Q ss_pred             cccccccccccccCCCCCCeecCCC
Q 042538           21 EAQICKSFTTGSCIYGSKCRFIHQV   45 (167)
Q Consensus        21 KTklCk~F~tG~CPYG~RC~FiH~~   45 (167)
                      |-++||-|.+|+|.-|..|.|.|.+
T Consensus         5 kkelCKfYvqGyCtrgenC~ymH~e   29 (29)
T d2cqea2           5 KRELCKFYITGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhheeeeecCCcCcccccCC
Confidence            5689999999999999999999974

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.018  Score=37.87  Aligned_cols=27  Identities=44%  Similarity=0.965  Sum_probs=23.3

Q ss_pred             ccccc-cccccCCCCCCeecCCCCChhH
Q 042538           24 ICKSF-TTGSCIYGSKCRFIHQVMTDSA   50 (167)
Q Consensus        24 lCk~F-~tG~CPYG~RC~FiH~~~~~aa   50 (167)
                      +||-| +++.|--|+.|.|.|..-++..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~pLt~~t   29 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDPLTEET   29 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCCCHHH
T ss_pred             CcceeecCCcccCCCcccccCCccCHHH
Confidence            69999 7889999999999998776543

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.029  Score=34.13  Aligned_cols=27  Identities=30%  Similarity=0.728  Sum_probs=23.9

Q ss_pred             cccccccccc-cccccCCCCCCeecCCC
Q 042538           19 KSEAQICKSF-TTGSCIYGSKCRFIHQV   45 (167)
Q Consensus        19 KYKTklCk~F-~tG~CPYG~RC~FiH~~   45 (167)
                      ...|.+|.+| ..|-||.|..|--.|+.
T Consensus        10 ~~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          10 PHPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CCccchhhhhhhccccCCCCCCcccCcC
Confidence            3678999999 99999999999988863