Citrus Sinensis ID: 042544
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 305 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LM02 | 336 | Cycloartenol-C-24-methylt | yes | no | 0.973 | 0.883 | 0.752 | 1e-147 | |
| Q6ZIX2 | 344 | Cycloartenol-C-24-methylt | yes | no | 0.990 | 0.877 | 0.718 | 1e-140 | |
| Q54I98 | 354 | Probable cycloartenol-C-2 | yes | no | 0.855 | 0.737 | 0.491 | 3e-78 | |
| Q6C2D9 | 381 | Sterol 24-C-methyltransfe | yes | no | 0.868 | 0.695 | 0.429 | 5e-71 | |
| Q759S7 | 373 | Sterol 24-C-methyltransfe | yes | no | 0.865 | 0.707 | 0.440 | 1e-69 | |
| O74198 | 376 | Sterol 24-C-methyltransfe | N/A | no | 0.865 | 0.702 | 0.430 | 1e-68 | |
| Q6CYB3 | 371 | Sterol 24-C-methyltransfe | yes | no | 0.940 | 0.773 | 0.413 | 3e-68 | |
| P25087 | 383 | Sterol 24-C-methyltransfe | yes | no | 0.872 | 0.694 | 0.437 | 2e-67 | |
| Q875K1 | 375 | Sterol 24-C-methyltransfe | N/A | no | 0.865 | 0.704 | 0.414 | 1e-66 | |
| Q6BRB7 | 377 | Sterol 24-C-methyltransfe | yes | no | 0.859 | 0.694 | 0.421 | 1e-66 |
| >sp|Q9LM02|SMT1_ARATH Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 253/336 (75%), Positives = 278/336 (82%), Gaps = 39/336 (11%)
Query: 7 FDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGW 66
DLAS +GGKIDK++VL+AVEKYE+YHV +GG EEERKANYTDMVNKYYDL TSFYE+GW
Sbjct: 1 MDLASNLGGKIDKSDVLTAVEKYEQYHVFHGGNEEERKANYTDMVNKYYDLATSFYEYGW 60
Query: 67 GESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSV 126
GESFHFA RWKGESLRESIKRHEHFLALQLG++ GQKVLDVGCGIGGPLREIA+FS++ V
Sbjct: 61 GESFHFAQRWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVV 120
Query: 127 TGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDA-- 184
TGLNNNEYQITRGKELNR AGVDKTCNFVKADFMKMPFP+NSFDAVYAIEATCHAPDA
Sbjct: 121 TGLNNNEYQITRGKELNRLAGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDAYG 180
Query: 185 -------------------------------------AEIEIGDGLPDIRSTRKCLEALK 207
EIEIGDGLPDIR T KCLEALK
Sbjct: 181 CYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIRLTTKCLEALK 240
Query: 208 QAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKG 267
QAGFEVIWEKDLA DSP+PWYLPLD +HFSLSSFRLT+VGRF+T+NMVK LE++ LAP+G
Sbjct: 241 QAGFEVIWEKDLAKDSPVPWYLPLDKNHFSLSSFRLTAVGRFITKNMVKILEYIRLAPQG 300
Query: 268 SQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQ 303
SQRV +FLE+AAEGL GGR+EIFTPMYFFLARKP+
Sbjct: 301 SQRVSNFLEQAAEGLVDGGRREIFTPMYFFLARKPE 336
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 1 |
| >sp|Q6ZIX2|SMT1_ORYSJ Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1 | Back alignment and function description |
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Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/341 (71%), Positives = 271/341 (79%), Gaps = 39/341 (11%)
Query: 1 MSKAGAFDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTS 60
MS++GA DLASG+GGKI K EV SAV++YEKYH YGG+EE RK+NYTDMVNKYYDL TS
Sbjct: 1 MSRSGAMDLASGLGGKITKDEVKSAVDEYEKYHGYYGGKEEARKSNYTDMVNKYYDLATS 60
Query: 61 FYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120
FYE+GWGESFHFA RW GESLRESIKRHEHFLALQLG+K G KVLDVGCGIGGPLREIA+
Sbjct: 61 FYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAK 120
Query: 121 FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180
FS SVTGLNNNEYQITRGKELNR AGV TC+FVKADFMKMPF DN+FDAVYAIEATCH
Sbjct: 121 FSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCH 180
Query: 181 APDAA---------------------------------------EIEIGDGLPDIRSTRK 201
APD EIE+G+GLPDIRST++
Sbjct: 181 APDPVGCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIRSTQQ 240
Query: 202 CLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFV 261
CL+A K AGFEVIW+KDLA DSP+PWYLPLD S FSLSSFRLT+VGR +TR MVKALE+V
Sbjct: 241 CLQAAKDAGFEVIWDKDLAEDSPVPWYLPLDPSRFSLSSFRLTTVGRAITRTMVKALEYV 300
Query: 262 GLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302
GLAP+GS+RV +FLEKAAEGL GG+KEIFTPMYFFL RKP
Sbjct: 301 GLAPQGSERVSNFLEKAAEGLVEGGKKEIFTPMYFFLVRKP 341
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q54I98|SMT1_DICDI Probable cycloartenol-C-24-methyltransferase 1 OS=Dictyostelium discoideum GN=smt1 PE=1 SV=1 | Back alignment and function description |
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Score = 291 bits (746), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 148/301 (49%), Positives = 183/301 (60%), Gaps = 40/301 (13%)
Query: 41 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKS 100
+ RK NYT MVN +YDL T FYEFGWG+SFHFA R K ES SI RHE ++A QLGL
Sbjct: 52 QARKNNYTHMVNTFYDLATDFYEFGWGQSFHFATRHKYESFEASIARHEMYMAHQLGLFP 111
Query: 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM 160
G KV+D+GCG+GGP+R IA+FS +V GLNNNEYQI RGK LN AG+ C+F+KADFM
Sbjct: 112 GMKVIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQRGKRLNESAGLSHLCSFIKADFM 171
Query: 161 KMPFPDNSFDAVYAIEATCHAPDAA----------------------------------- 185
+P DN++D Y IEATCHAPD
Sbjct: 172 HVPVEDNTYDCAYQIEATCHAPDLVGLYKEVFRIVKPGGLFGGYEWIMTNKFNPEDPVEV 231
Query: 186 ----EIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSF 241
+IE+G+GLPD+ + + A K AGFEVI D+A S LPWYLPL +S S++ F
Sbjct: 232 NIKKQIELGNGLPDLVKPAEIINAAKAAGFEVITAFDVAETSELPWYLPL-SSGVSITGF 290
Query: 242 RLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301
T VGR++T + LE V LAP GS +L+ AA L GG K+IF+PM+F L RK
Sbjct: 291 LHTGVGRYLTGKFTQLLEIVKLAPAGSYNTNVWLQNAATFLVQGGEKQIFSPMFFLLCRK 350
Query: 302 P 302
P
Sbjct: 351 P 351
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q6C2D9|ERG6_YARLI Sterol 24-C-methyltransferase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ERG6 PE=3 SV=1 | Back alignment and function description |
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Score = 268 bits (684), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 189/312 (60%), Gaps = 47/312 (15%)
Query: 39 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGL 98
+E+ R +Y + YY+LVT FYE+GWG SFHF+ +KGE+ R++ RHEH+LA ++G+
Sbjct: 67 DEQGRIEDYAGLTKHYYNLVTDFYEYGWGSSFHFSRYYKGEAFRQATARHEHYLAYKMGI 126
Query: 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158
+ G KVLDVGCG+GGP REIA+F+ ++ GLNNN+YQ+ RG + G +VK D
Sbjct: 127 QPGMKVLDVGCGVGGPAREIARFTGANIVGLNNNDYQVERGTHYSEVQGFGDQVTYVKGD 186
Query: 159 FMKMPFPDNSFDAVYAIEATCHAP------------------------------DAAE-- 186
FM+M FPDNSFDAVYAIEAT HAP D +
Sbjct: 187 FMQMDFPDNSFDAVYAIEATVHAPVLEGVYSEIFRVLKPGGVFGVYEWVMTDEYDESNPE 246
Query: 187 -------IEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAP-DSPLPWYLPLDTSHFSL 238
IE GDG+P + ++AL+ GF++ +++DLA D+ +PWY PL +
Sbjct: 247 HRDICYGIEKGDGIPKMYKREVAVKALENVGFDIEYQEDLAADDAEVPWYYPLAGEWKYV 306
Query: 239 SSF-------RLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIF 291
S R + +GR VT N++ ALE +GLAP+GS++V + LE AA L AGG+K++F
Sbjct: 307 QSLNDIVTIGRTSRLGRMVTMNVIGALEKIGLAPQGSRQVTEALEDAAVNLVAGGKKKLF 366
Query: 292 TPMYFFLARKPQ 303
TPM F++RKP+
Sbjct: 367 TPMMLFVSRKPE 378
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q759S7|ERG6_ASHGO Sterol 24-C-methyltransferase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERG6 PE=3 SV=1 | Back alignment and function description |
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Score = 263 bits (672), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 137/311 (44%), Positives = 185/311 (59%), Gaps = 47/311 (15%)
Query: 40 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLK 99
EE R A+Y + + YY++VT FYE+GWG SFHF+ + GES S+ RHEH+LA + G+
Sbjct: 60 EERRLADYNESTHSYYNVVTDFYEYGWGASFHFSRFYTGESFAMSMARHEHYLAHRAGIT 119
Query: 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF 159
SG VLDVGCG+GGP REIA+F+ V GLNNN+YQI +GK +R G+ ++VK DF
Sbjct: 120 SGDLVLDVGCGVGGPAREIARFTGCRVVGLNNNDYQIMKGKHYSRKLGLGDQVSYVKGDF 179
Query: 160 MKMPFPDNSFDAVYAIEATCHAPD------------------------------------ 183
M M FPD +FD VYAIEATCHAP
Sbjct: 180 MNMDFPDATFDKVYAIEATCHAPSFEGVYGEIYRVLKPGGVFAVYEWVMTENYDETNPEH 239
Query: 184 ---AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAP-DSPLPWYLPLD------T 233
A +IE+GDG+P + S + +AL + GFE++ ++D A D P+PWY PL
Sbjct: 240 RRIAYDIELGDGIPKMYSVKVARDALAKVGFEILVDEDRADNDDPVPWYYPLTGEWAYIQ 299
Query: 234 SHFSLSSF-RLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFT 292
+ L +F R +++GR VT V +E + LAP+GS V + LE AA GL AGG+ ++FT
Sbjct: 300 TIADLGTFVRTSALGRRVTSAFVSLMETLRLAPRGSSEVVNALESAAAGLVAGGKSKLFT 359
Query: 293 PMYFFLARKPQ 303
PM F+ARKP+
Sbjct: 360 PMMLFVARKPE 370
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|O74198|ERG6_CANAL Sterol 24-C-methyltransferase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ERG6 PE=3 SV=1 | Back alignment and function description |
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Score = 260 bits (664), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 134/311 (43%), Positives = 181/311 (58%), Gaps = 47/311 (15%)
Query: 39 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGL 98
+EE+R +Y+ + + YY+LVT FYE+GWG SFHF+ +KGE+ R++ RHEHFLA ++ L
Sbjct: 61 DEEKRLNDYSQLTHHYYNLVTDFYEYGWGSSFHFSRYYKGEAFRQATARHEHFLAHKMNL 120
Query: 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158
KVLDVGCG+GGP REI +F+ + GLNNN+YQI R + +D ++VK D
Sbjct: 121 NENMKVLDVGCGVGGPGREITRFTDCEIVGLNNNDYQIERANHYAKKYHLDHKLSYVKGD 180
Query: 159 FMKMPFPDNSFDAVYAIEATCHAP------------------------------------ 182
FM+M F SFDAVYAIEAT HAP
Sbjct: 181 FMQMDFEPESFDAVYAIEATVHAPVLEGVYSEIYKVLKPGGIFGVYEWVMTDKYDETNEE 240
Query: 183 ---DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAP-DSPLPWYLPL------- 231
A IE+GDG+P + S + +ALK GFE+ ++KDLA D +PWY PL
Sbjct: 241 HRKIAYGIEVGDGIPKMYSRKVAEQALKNVGFEIEYQKDLADVDDEIPWYYPLSGDLKFC 300
Query: 232 DTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIF 291
T L+ FR + +GRF+T V +E +GLAPKGS++V LE AA L GGR+++F
Sbjct: 301 QTFGDYLTVFRTSRIGRFITTESVGLMEKIGLAPKGSKQVTHALEDAAVNLVEGGRQKLF 360
Query: 292 TPMYFFLARKP 302
TPM ++ RKP
Sbjct: 361 TPMMLYVVRKP 371
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q6CYB3|ERG6_KLULA Sterol 24-C-methyltransferase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ERG6 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (660), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 192/336 (57%), Gaps = 49/336 (14%)
Query: 18 DKTEVLSAVEKYEKYHVCYGGEEEERK--ANYTDMVNKYYDLVTSFYEFGWGESFHFAPR 75
+K+ AV KY K+ + ER+ +Y + + YY++VT FYE+GWG SFHF+
Sbjct: 35 NKSAQTEAVAKYLKHWDGKTDADAERRRLEDYNESTHSYYNVVTDFYEYGWGSSFHFSRF 94
Query: 76 WKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQ 135
+KGES S+ RHEH+LA + G+K +LDVGCG+GGP R I++F+ ++ GLNNN+YQ
Sbjct: 95 FKGESFSASVARHEHYLAYKAGIKENDLILDVGCGVGGPARTISRFTGCNIIGLNNNDYQ 154
Query: 136 ITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD------------ 183
I + + +D +FVK DFMKM F +N+FD+VYAIEATCHAP
Sbjct: 155 IQKANYYAKRDHLDSKLSFVKGDFMKMEFDENTFDSVYAIEATCHAPTFEGVYGEIYKVL 214
Query: 184 ---------------------------AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216
A EIE+GDG+P + S +AL + GFE++ E
Sbjct: 215 KPGGTFAVYEWVMTDKYDETNPEHRKIAYEIELGDGIPKMYSVDAARDALSKVGFEILEE 274
Query: 217 KDLAP-DSPLPWYLPLDTSHFSLSS-------FRLTSVGRFVTRNMVKALEFVGLAPKGS 268
DLA D +PWY PL ++S FR + +GR T +MV E +GLAPKGS
Sbjct: 275 NDLADNDDEIPWYAPLTGEWKYVNSVADLATFFRTSRLGRAFTTSMVTVFEKLGLAPKGS 334
Query: 269 QRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQH 304
V + LE+AA GL AGG K++FTPM F+A+KP+
Sbjct: 335 VSVTNALEEAAVGLVAGGEKKLFTPMMLFVAKKPEQ 370
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|P25087|ERG6_YEAST Sterol 24-C-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG6 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 137/313 (43%), Positives = 181/313 (57%), Gaps = 47/313 (15%)
Query: 40 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLK 99
EE R +Y + + YY++VT FYE+GWG SFHF+ +KGES SI RHEH+LA + G++
Sbjct: 59 EERRLEDYNEATHSYYNVVTDFYEYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGIQ 118
Query: 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF 159
G VLDVGCG+GGP REIA+F+ +V GLNNN+YQI + K + + +FVK DF
Sbjct: 119 RGDLVLDVGCGVGGPAREIARFTGCNVIGLNNNDYQIAKAKYYAKKYNLSDQMDFVKGDF 178
Query: 160 MKMPFPDNSFDAVYAIEATCHAPD------------------------------------ 183
MKM F +N+FD VYAIEATCHAP
Sbjct: 179 MKMDFEENTFDKVYAIEATCHAPKLEGVYSEIYKVLKPGGTFAVYEWVMTDKYDENNPEH 238
Query: 184 ---AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAP-DSPLPWYLPLDTSHFSLS 239
A EIE+GDG+P + +ALK GFEV+ +DLA D +PWY PL +
Sbjct: 239 RKIAYEIELGDGIPKMFHVDVARKALKNCGFEVLVSEDLADNDDEIPWYYPLTGEWKYVQ 298
Query: 240 S-------FRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFT 292
+ FR + +GR T MV +E +GLAP+GS+ V LE AA GL AGG+ ++FT
Sbjct: 299 NLANLATFFRTSYLGRQFTTAMVTVMEKLGLAPEGSKEVTAALENAAVGLVAGGKSKLFT 358
Query: 293 PMYFFLARKPQHG 305
PM F+ARKP++
Sbjct: 359 PMMLFVARKPENA 371
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q875K1|ERG6_CLAL4 Sterol 24-C-methyltransferase OS=Clavispora lusitaniae (strain ATCC 42720) GN=ERG6 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 181/311 (58%), Gaps = 47/311 (15%)
Query: 39 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGL 98
+E++R +Y+ + YY+LVT FYE+GWG SFHF+ +KGE+ R++ RHEHFLA ++ +
Sbjct: 61 DEKKRLDDYSSLTKNYYNLVTDFYEYGWGSSFHFSRYYKGEAFRQATARHEHFLAHKMNI 120
Query: 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158
+VLDVGCG+GGP REI +F+ ++ GLNNN+YQ+ R + + +D ++VK D
Sbjct: 121 NENMRVLDVGCGVGGPGREICRFTDCTIVGLNNNDYQVERAQYYAKKYKLDDKLSYVKGD 180
Query: 159 FMKMPFPDNSFDAVYAIEATCHAP------------------------------------ 182
FM+M F SFDAVYAIEAT HAP
Sbjct: 181 FMQMDFEPESFDAVYAIEATVHAPVLEGVYSEIYKVLKPGGVFGVYEWVMTDKYDENNEE 240
Query: 183 ---DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAP-DSPLPWYLPL------- 231
A IE+GDG+P + +ALK GF++ +EKDLA + +PWY PL
Sbjct: 241 HRKIAYGIEVGDGIPKMYKREVAEQALKNVGFDIEYEKDLADVNDEIPWYYPLAGEWKYV 300
Query: 232 DTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIF 291
T + FR + +GR VT N+V +E +GLAPKGS++V LE AA L AGG +++F
Sbjct: 301 QTLSDCFTIFRTSKIGRTVTTNVVGLMEKIGLAPKGSKQVTGALEDAAVNLVAGGEQKLF 360
Query: 292 TPMYFFLARKP 302
TPM ++ARKP
Sbjct: 361 TPMMLYIARKP 371
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Clavispora lusitaniae (strain ATCC 42720) (taxid: 306902) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q6BRB7|ERG6_DEBHA Sterol 24-C-methyltransferase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ERG6 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (645), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/313 (42%), Positives = 182/313 (58%), Gaps = 51/313 (16%)
Query: 39 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGL 98
+E++R ++Y+++ YY+LVT FYE+GWG SFHF+ + GE+ R++ RHEHFLA ++ +
Sbjct: 62 DEDKRLSDYSNLTAHYYNLVTDFYEYGWGSSFHFSRYYTGEAFRQATARHEHFLAHKMQI 121
Query: 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158
KVLDVGCG+GGP REI +F+ S+ GLNNN+YQI R R +D +FVK D
Sbjct: 122 NENMKVLDVGCGVGGPAREICRFTDCSIVGLNNNDYQIERANHYARKYKLDDKLSFVKGD 181
Query: 159 FMKMPFPDNSFDAVYAIEATCHAP-------------------------------DAAE- 186
FM+M F SFDAVYAIEAT HAP D E
Sbjct: 182 FMQMDFEAESFDAVYAIEATVHAPVLEGVYSEIYKVLKPGGVFGVYEWVMTDKYDDENEE 241
Query: 187 -------IEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA-PDSPLPWYLPLD------ 232
IE+GDG+P + +ALK GFE+ +E DLA + +PWY PL
Sbjct: 242 HRKIAYGIEVGDGIPKMYKREVAEKALKSVGFEIEYEADLADKEDDIPWYYPLSGEWKYV 301
Query: 233 ---TSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKE 289
+ +F++ FR + VGR +T V +E +GLAPKGS++V + LE AA L GGR++
Sbjct: 302 QTLSDYFTI--FRTSKVGRTITTEAVGLMEKLGLAPKGSKQVTNALEDAAVNLVEGGRQK 359
Query: 290 IFTPMYFFLARKP 302
+FTPM ++ RKP
Sbjct: 360 LFTPMMLYVCRKP 372
|
Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 305 | ||||||
| 73761691 | 346 | 24-sterol C-methyltransferase [Gossypium | 0.990 | 0.872 | 0.806 | 1e-156 | |
| 225450051 | 353 | PREDICTED: cycloartenol-C-24-methyltrans | 0.993 | 0.858 | 0.807 | 1e-156 | |
| 297736296 | 421 | unnamed protein product [Vitis vinifera] | 0.993 | 0.719 | 0.807 | 1e-156 | |
| 449464008 | 346 | PREDICTED: cycloartenol-C-24-methyltrans | 0.990 | 0.872 | 0.797 | 1e-155 | |
| 351725990 | 367 | S-adenosyl-L-methionine:delta24-sterol-C | 0.986 | 0.820 | 0.797 | 1e-154 | |
| 224104093 | 346 | predicted protein [Populus trichocarpa] | 1.0 | 0.881 | 0.776 | 1e-152 | |
| 358248512 | 340 | uncharacterized protein LOC100796978 [Gl | 0.970 | 0.870 | 0.797 | 1e-152 | |
| 255637061 | 340 | unknown [Glycine max] | 0.970 | 0.870 | 0.797 | 1e-152 | |
| 224059612 | 346 | predicted protein [Populus trichocarpa] | 0.993 | 0.875 | 0.766 | 1e-150 | |
| 357458199 | 340 | Cycloartenol-C-24-methyltransferase [Med | 0.970 | 0.870 | 0.782 | 1e-148 |
| >gi|73761691|gb|AAZ83345.1| 24-sterol C-methyltransferase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 275/341 (80%), Positives = 289/341 (84%), Gaps = 39/341 (11%)
Query: 1 MSKAGAFDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTS 60
MSKAGA DLASG+GGKI+K EVLSAVE+YE+YHV YGGEEEERKANYTDMVNKYYDLVTS
Sbjct: 1 MSKAGALDLASGLGGKIEKAEVLSAVEQYERYHVFYGGEEEERKANYTDMVNKYYDLVTS 60
Query: 61 FYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120
FYEFGWGESFHFAPRW GESL+ESIKRHEHFLALQLGLK G KVLDVGCGIGGPLREIA+
Sbjct: 61 FYEFGWGESFHFAPRWNGESLKESIKRHEHFLALQLGLKPGHKVLDVGCGIGGPLREIAR 120
Query: 121 FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180
FSSTSVTG+NNNEYQITRGKELNR AGV+KTCNFVKADFMKMPFPD++FDAVYAIEATCH
Sbjct: 121 FSSTSVTGINNNEYQITRGKELNRIAGVEKTCNFVKADFMKMPFPDSAFDAVYAIEATCH 180
Query: 181 APDA---------------------------------------AEIEIGDGLPDIRSTRK 201
APDA AEIEIGDGLPDIR T +
Sbjct: 181 APDAYGCYKEIYRVLKPGQYFAAYEWCMTDSFDPNNSEHQKIKAEIEIGDGLPDIRLTGQ 240
Query: 202 CLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFV 261
CLEALK+AGFE+IWEKDLA SPLPWYLPLDTSHFSLSSFRLTSVGRF+TRNMVKALEFV
Sbjct: 241 CLEALKEAGFEIIWEKDLAVGSPLPWYLPLDTSHFSLSSFRLTSVGRFITRNMVKALEFV 300
Query: 262 GLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302
GLAPKGSQRVQDFLEKAAEGL GGRKEIFTPMYFFLARKP
Sbjct: 301 GLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPMYFFLARKP 341
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450051|ref|XP_002276734.1| PREDICTED: cycloartenol-C-24-methyltransferase isoform 1 [Vitis vinifera] gi|359487307|ref|XP_003633564.1| PREDICTED: cycloartenol-C-24-methyltransferase isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/342 (80%), Positives = 288/342 (84%), Gaps = 39/342 (11%)
Query: 1 MSKAGAFDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTS 60
MSKAGA DLASGVGGKI K EVLSAVEKYEKYHVCYGGEEEERKANY+DMVNKYYDLVTS
Sbjct: 1 MSKAGALDLASGVGGKIQKDEVLSAVEKYEKYHVCYGGEEEERKANYSDMVNKYYDLVTS 60
Query: 61 FYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120
FYEFGWGESFHFAPRWKGESLRESI+RHEHFLALQLG+K GQKVLDVGCGIGGPLREIA+
Sbjct: 61 FYEFGWGESFHFAPRWKGESLRESIRRHEHFLALQLGVKPGQKVLDVGCGIGGPLREIAR 120
Query: 121 FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180
FSSTSVTGLNNNEYQITRG+ELN AGVDKTC+FVKADFMKMPF DN+FDAVYAIEATCH
Sbjct: 121 FSSTSVTGLNNNEYQITRGRELNCIAGVDKTCDFVKADFMKMPFSDNTFDAVYAIEATCH 180
Query: 181 APDA---------------------------------------AEIEIGDGLPDIRSTRK 201
APDA AEIEIGDGLPDIR TR+
Sbjct: 181 APDALGCYKEIYRVLKPGQCFAAYEWCMTDAFDPNNQEHQKIKAEIEIGDGLPDIRLTRQ 240
Query: 202 CLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFV 261
CLEALKQAGFEVIWEKDLA SPLPWYLPLD SHFSLSSFRLT+VGRF+T+NMVKALEFV
Sbjct: 241 CLEALKQAGFEVIWEKDLAVGSPLPWYLPLDKSHFSLSSFRLTAVGRFITKNMVKALEFV 300
Query: 262 GLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQ 303
GLAPKGSQRVQ FLEKAAEGL GG+KEIFTPMYFFLARKP
Sbjct: 301 GLAPKGSQRVQAFLEKAAEGLVDGGKKEIFTPMYFFLARKPN 342
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736296|emb|CBI24934.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/342 (80%), Positives = 288/342 (84%), Gaps = 39/342 (11%)
Query: 1 MSKAGAFDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTS 60
MSKAGA DLASGVGGKI K EVLSAVEKYEKYHVCYGGEEEERKANY+DMVNKYYDLVTS
Sbjct: 69 MSKAGALDLASGVGGKIQKDEVLSAVEKYEKYHVCYGGEEEERKANYSDMVNKYYDLVTS 128
Query: 61 FYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120
FYEFGWGESFHFAPRWKGESLRESI+RHEHFLALQLG+K GQKVLDVGCGIGGPLREIA+
Sbjct: 129 FYEFGWGESFHFAPRWKGESLRESIRRHEHFLALQLGVKPGQKVLDVGCGIGGPLREIAR 188
Query: 121 FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180
FSSTSVTGLNNNEYQITRG+ELN AGVDKTC+FVKADFMKMPF DN+FDAVYAIEATCH
Sbjct: 189 FSSTSVTGLNNNEYQITRGRELNCIAGVDKTCDFVKADFMKMPFSDNTFDAVYAIEATCH 248
Query: 181 APDA---------------------------------------AEIEIGDGLPDIRSTRK 201
APDA AEIEIGDGLPDIR TR+
Sbjct: 249 APDALGCYKEIYRVLKPGQCFAAYEWCMTDAFDPNNQEHQKIKAEIEIGDGLPDIRLTRQ 308
Query: 202 CLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFV 261
CLEALKQAGFEVIWEKDLA SPLPWYLPLD SHFSLSSFRLT+VGRF+T+NMVKALEFV
Sbjct: 309 CLEALKQAGFEVIWEKDLAVGSPLPWYLPLDKSHFSLSSFRLTAVGRFITKNMVKALEFV 368
Query: 262 GLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQ 303
GLAPKGSQRVQ FLEKAAEGL GG+KEIFTPMYFFLARKP
Sbjct: 369 GLAPKGSQRVQAFLEKAAEGLVDGGKKEIFTPMYFFLARKPN 410
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464008|ref|XP_004149721.1| PREDICTED: cycloartenol-C-24-methyltransferase-like [Cucumis sativus] gi|449517755|ref|XP_004165910.1| PREDICTED: cycloartenol-C-24-methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust.
Identities = 272/341 (79%), Positives = 286/341 (83%), Gaps = 39/341 (11%)
Query: 1 MSKAGAFDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTS 60
MSK GA DLASG+GGK++K EVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTS
Sbjct: 1 MSKTGALDLASGLGGKLEKNEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTS 60
Query: 61 FYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120
FYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQL LK G KVLDVGCGIGGPLREIA+
Sbjct: 61 FYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLDLKPGYKVLDVGCGIGGPLREIAR 120
Query: 121 FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180
FS TSVTGLNNNEYQI+RGKELNR A VD+TC+FVKADFMKMPFPDNSFDAVYAIEATCH
Sbjct: 121 FSYTSVTGLNNNEYQISRGKELNRVAKVDRTCDFVKADFMKMPFPDNSFDAVYAIEATCH 180
Query: 181 APDA---------------------------------------AEIEIGDGLPDIRSTRK 201
APDA AEIEIGDGLPDIR T K
Sbjct: 181 APDAYGCYKEIYRVLKPGQHFAAYEWCMTDAFDPNNQEHQKIKAEIEIGDGLPDIRMTGK 240
Query: 202 CLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFV 261
CLEALKQAGFEVIWEKDLA +SPLPWYLPLD SHFSLSSFRLT++GRF+T+NMVKALEF+
Sbjct: 241 CLEALKQAGFEVIWEKDLAENSPLPWYLPLDKSHFSLSSFRLTALGRFITKNMVKALEFI 300
Query: 262 GLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302
LAPKGSQRVQDFLEKAAEGL GG+KEIFTPMYFFLARKP
Sbjct: 301 RLAPKGSQRVQDFLEKAAEGLVEGGKKEIFTPMYFFLARKP 341
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351725990|ref|NP_001238391.1| S-adenosyl-L-methionine:delta24-sterol-C-methyltransferase [Glycine max] gi|1399380|gb|AAB04057.1| S-adenosyl-L-methionine:delta24-sterol-C-methyltransferase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/340 (79%), Positives = 283/340 (83%), Gaps = 39/340 (11%)
Query: 2 SKAGAFDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSF 61
S+ A DLAS +GGKIDK EVLSAV+KYEKYHVCYGG+EEERKANYTDMVNKYYDLVTSF
Sbjct: 23 SRLAAMDLASNLGGKIDKAEVLSAVQKYEKYHVCYGGQEEERKANYTDMVNKYYDLVTSF 82
Query: 62 YEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF 121
YEFGWGESFHFAPRWKGESLRESIKRHEHFL LQLGLK GQKVLDVGCGIGGPLREI++F
Sbjct: 83 YEFGWGESFHFAPRWKGESLRESIKRHEHFLPLQLGLKPGQKVLDVGCGIGGPLREISRF 142
Query: 122 SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181
SSTS+TGLNNNEYQITRGKELNR AGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA
Sbjct: 143 SSTSITGLNNNEYQITRGKELNRIAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 202
Query: 182 PDA---------------------------------------AEIEIGDGLPDIRSTRKC 202
PDA AEIEIGDGLPDIR T KC
Sbjct: 203 PDAYGCYKEIFRVLKPGQYFAAYEWCMTDSFDPQNPEHQKIKAEIEIGDGLPDIRLTAKC 262
Query: 203 LEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVG 262
LEALKQAGFEVIWEKDLA DSPLPWYLPLD SHFSLSSFRLT+VGR T+NMVK LE+VG
Sbjct: 263 LEALKQAGFEVIWEKDLAVDSPLPWYLPLDKSHFSLSSFRLTAVGRLFTKNMVKVLEYVG 322
Query: 263 LAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302
LAPKGS RVQDFLEKAAEGL GG++EIFTPMYFFLARKP
Sbjct: 323 LAPKGSLRVQDFLEKAAEGLVEGGKREIFTPMYFFLARKP 362
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104093|ref|XP_002313315.1| predicted protein [Populus trichocarpa] gi|222849723|gb|EEE87270.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 267/344 (77%), Positives = 289/344 (84%), Gaps = 39/344 (11%)
Query: 1 MSKAGAFDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTS 60
MSKAGA DLA+G+GGKIDK++VLSAVEKYEKYHVCYGG+EEERKANY+DMVNKYYDLVTS
Sbjct: 1 MSKAGALDLATGLGGKIDKSDVLSAVEKYEKYHVCYGGDEEERKANYSDMVNKYYDLVTS 60
Query: 61 FYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120
FYEFGWGESFHFAPR+KGESLRESIKRHEHFLALQLGLK GQKVLDVGCGIGGPLREIA+
Sbjct: 61 FYEFGWGESFHFAPRFKGESLRESIKRHEHFLALQLGLKPGQKVLDVGCGIGGPLREIAR 120
Query: 121 FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180
FSSTSVTGLNNNEYQI+RGKELNR AGVD+TC+FVK DFMKMPFPDN +DAVYAIEATCH
Sbjct: 121 FSSTSVTGLNNNEYQISRGKELNRTAGVDRTCDFVKGDFMKMPFPDNIYDAVYAIEATCH 180
Query: 181 APDA---------------------------------------AEIEIGDGLPDIRSTRK 201
APDA AEIEIGDGLPDIR T +
Sbjct: 181 APDAYGCYSEIYRVLKPGQCFAAYEWCMTDSFDPHNQEHQKIKAEIEIGDGLPDIRLTGQ 240
Query: 202 CLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFV 261
C++AL +AGFEVIW KDLA SP+PWYLPLDTSHFSLSSFRLT+VGRF T+NMVKALEFV
Sbjct: 241 CIDALTKAGFEVIWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTAVGRFFTKNMVKALEFV 300
Query: 262 GLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQHG 305
GLAPKGSQRVQDFLEKAAEGL GGRKEIFTP++FF+ARKP G
Sbjct: 301 GLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKPHSG 344
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358248512|ref|NP_001239894.1| uncharacterized protein LOC100796978 [Glycine max] gi|255642541|gb|ACU21534.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust.
Identities = 267/335 (79%), Positives = 278/335 (82%), Gaps = 39/335 (11%)
Query: 7 FDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGW 66
DLAS +GGKIDK EVLSAV+KYEKYHVCYGG+EEERKANYTDMVNKYYDLVTSFYEFGW
Sbjct: 1 MDLASNLGGKIDKAEVLSAVQKYEKYHVCYGGQEEERKANYTDMVNKYYDLVTSFYEFGW 60
Query: 67 GESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSV 126
GESFHFAPRWKGESLRESIKRHEHFLA QLGLK GQKVLDVGCGIGGPLREI++FS TS+
Sbjct: 61 GESFHFAPRWKGESLRESIKRHEHFLASQLGLKPGQKVLDVGCGIGGPLREISRFSLTSI 120
Query: 127 TGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDA-- 184
TGLNNNEYQITRGKELNR AGVDKTCNFVKADFMKMP PDNSFDAVYAIEATCHAPDA
Sbjct: 121 TGLNNNEYQITRGKELNRIAGVDKTCNFVKADFMKMPLPDNSFDAVYAIEATCHAPDAYG 180
Query: 185 -------------------------------------AEIEIGDGLPDIRSTRKCLEALK 207
AEIEIGDGLPDIR T KCLEALK
Sbjct: 181 CYKEIFRVLKPGQCFAAYEWCMTDSFDPQNPEHQKIKAEIEIGDGLPDIRLTAKCLEALK 240
Query: 208 QAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKG 267
QAGFEVIWEKDLA DSPLPWYLPLD SHFSLSSFRLT+VGR T+NMVK LE+VGLAPKG
Sbjct: 241 QAGFEVIWEKDLAVDSPLPWYLPLDKSHFSLSSFRLTAVGRLFTKNMVKVLEYVGLAPKG 300
Query: 268 SQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302
S RVQDFLEKAAEGL GG++EIFTPMYFFLARKP
Sbjct: 301 SLRVQDFLEKAAEGLVEGGKREIFTPMYFFLARKP 335
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255637061|gb|ACU18862.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust.
Identities = 267/335 (79%), Positives = 278/335 (82%), Gaps = 39/335 (11%)
Query: 7 FDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGW 66
DLAS +GGKIDK EVLSAV+KYEKYHVCYGG+EEERKANYTDMVNKYYDLVTSFYEFGW
Sbjct: 1 MDLASNLGGKIDKAEVLSAVQKYEKYHVCYGGQEEERKANYTDMVNKYYDLVTSFYEFGW 60
Query: 67 GESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSV 126
GESFHFAPRWKGESLRESIKRHEHFL LQLGLK GQKVLDVGCGIGGPLREI++FSSTS+
Sbjct: 61 GESFHFAPRWKGESLRESIKRHEHFLPLQLGLKPGQKVLDVGCGIGGPLREISRFSSTSI 120
Query: 127 TGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDA-- 184
TGLNNNEYQITRGKELNR AGVDKTCNFVKADFMK PFPDNSFDAVYAIEATCHAPDA
Sbjct: 121 TGLNNNEYQITRGKELNRIAGVDKTCNFVKADFMKKPFPDNSFDAVYAIEATCHAPDAYG 180
Query: 185 -------------------------------------AEIEIGDGLPDIRSTRKCLEALK 207
AE EIGDGLPDIR T KCLEALK
Sbjct: 181 CYKEIFRVLKPGQYFAAYEWCMTDSFDPQNPEHQKIKAETEIGDGLPDIRLTAKCLEALK 240
Query: 208 QAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKG 267
QAGFEVIWEKDLA DSPLPWYLPLD SHFSLSSFRLT+VGR T+NMVK LE+VGLAPKG
Sbjct: 241 QAGFEVIWEKDLAVDSPLPWYLPLDKSHFSLSSFRLTAVGRLFTKNMVKVLEYVGLAPKG 300
Query: 268 SQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302
S RVQDFLEKAAEGL GG++EIFTPMYFFLARKP
Sbjct: 301 SLRVQDFLEKAAEGLVEGGKREIFTPMYFFLARKP 335
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059612|ref|XP_002299933.1| predicted protein [Populus trichocarpa] gi|222847191|gb|EEE84738.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 262/342 (76%), Positives = 289/342 (84%), Gaps = 39/342 (11%)
Query: 1 MSKAGAFDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTS 60
MSKAGA DLASG+GGKIDK++VLS+VEKYEKYHV YGG EE+RKANY+DMVNKYYDLVTS
Sbjct: 1 MSKAGALDLASGLGGKIDKSDVLSSVEKYEKYHVYYGGAEEDRKANYSDMVNKYYDLVTS 60
Query: 61 FYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120
FYEFGWGESFHFAPR+KGESLRESIKRHEHFLALQLGLK GQKVLDVGCGIGGPLREIA+
Sbjct: 61 FYEFGWGESFHFAPRFKGESLRESIKRHEHFLALQLGLKPGQKVLDVGCGIGGPLREIAR 120
Query: 121 FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180
FSSTSVTGLNNNEYQI+RGKELNR AGVD+TC+F+KADFMKMPFPDNSFDAVYAIEATCH
Sbjct: 121 FSSTSVTGLNNNEYQISRGKELNRIAGVDRTCDFLKADFMKMPFPDNSFDAVYAIEATCH 180
Query: 181 APDA---------------------------------------AEIEIGDGLPDIRSTRK 201
APDA +EIEIGDGLPDIRST +
Sbjct: 181 APDAYGCYSEIYRVLKPGQCFAAYEWCMTDAFNPHDQEHQKIKSEIEIGDGLPDIRSTGQ 240
Query: 202 CLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFV 261
C++ALK+AGFEVIW KDLA SP+PWYLPLDT+HFSL+SFRLT+VGRF TRNMVKALE++
Sbjct: 241 CIDALKKAGFEVIWSKDLAVGSPMPWYLPLDTTHFSLNSFRLTAVGRFFTRNMVKALEYL 300
Query: 262 GLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQ 303
G+APKGSQRVQDFLEKAA+GL GGRKEIFTP++FF ARKP
Sbjct: 301 GVAPKGSQRVQDFLEKAAQGLVEGGRKEIFTPLFFFFARKPH 342
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458199|ref|XP_003599380.1| Cycloartenol-C-24-methyltransferase [Medicago truncatula] gi|217071918|gb|ACJ84319.1| unknown [Medicago truncatula] gi|355488428|gb|AES69631.1| Cycloartenol-C-24-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/335 (78%), Positives = 274/335 (81%), Gaps = 39/335 (11%)
Query: 7 FDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGW 66
DLAS +GGKI+K +VLSAV+KYEKYH YGG+E+ERKANY+DMVNKYYDL TSFYEFGW
Sbjct: 1 MDLASNLGGKIEKAQVLSAVDKYEKYHASYGGQEDERKANYSDMVNKYYDLATSFYEFGW 60
Query: 67 GESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSV 126
GESFHFA RW GESLRESIKRHEHFLALQLGL GQKVLDVGCGIGGPLREI++FSSTSV
Sbjct: 61 GESFHFATRWVGESLRESIKRHEHFLALQLGLTPGQKVLDVGCGIGGPLREISRFSSTSV 120
Query: 127 TGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDA-- 184
TGLNNNEYQITRGK LNR GVDKTCNFVKADFMKMPF DNSFDAVYAIEATCHAPDA
Sbjct: 121 TGLNNNEYQITRGKALNRKTGVDKTCNFVKADFMKMPFEDNSFDAVYAIEATCHAPDAYG 180
Query: 185 -------------------------------------AEIEIGDGLPDIRSTRKCLEALK 207
AEIEIGDGLPDIR T KCLEALK
Sbjct: 181 CYKEIYRVLKPGQCFAAYEWCMTDSFDPNNQEHQKIKAEIEIGDGLPDIRLTTKCLEALK 240
Query: 208 QAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKG 267
QAGFEVIWEKDLA DSPLPWYLPLD SHFSLSSFRLT+VGR TRNMVKALEFVGLAPKG
Sbjct: 241 QAGFEVIWEKDLASDSPLPWYLPLDKSHFSLSSFRLTAVGRLFTRNMVKALEFVGLAPKG 300
Query: 268 SQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302
SQRVQDFLEKAAEGL GG++EIFTPMYFFLARKP
Sbjct: 301 SQRVQDFLEKAAEGLVEGGKREIFTPMYFFLARKP 335
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 305 | ||||||
| TAIR|locus:2173229 | 336 | SMT1 "sterol methyltransferase | 0.580 | 0.526 | 0.881 | 4.8e-131 | |
| DICTYBASE|DDB_G0288907 | 354 | smt1 "putative delta-24-sterol | 0.468 | 0.403 | 0.636 | 5.3e-71 | |
| CGD|CAL0006397 | 376 | ERG6 [Candida albicans (taxid: | 0.557 | 0.452 | 0.483 | 7.8e-62 | |
| UNIPROTKB|O74198 | 376 | ERG6 "Sterol 24-C-methyltransf | 0.557 | 0.452 | 0.483 | 7.8e-62 | |
| POMBASE|SPBC16E9.05 | 378 | erg6 "sterol 24-C-methyltransf | 0.511 | 0.412 | 0.522 | 9.9e-62 | |
| SGD|S000004467 | 383 | ERG6 "Delta(24)-sterol C-methy | 0.468 | 0.373 | 0.559 | 1.3e-61 | |
| ASPGD|ASPL0000068274 | 377 | AN7146 [Emericella nidulans (t | 0.481 | 0.389 | 0.571 | 4.8e-60 | |
| UNIPROTKB|G5EGY9 | 380 | MGCH7_ch7g116 "Sterol 24-C-met | 0.567 | 0.455 | 0.491 | 8.8e-57 | |
| UNIPROTKB|Q5EN22 | 390 | ERG6 "Sterol 24-C-methyltransf | 0.478 | 0.374 | 0.493 | 2.3e-56 | |
| TAIR|locus:2012938 | 361 | SMT2 "sterol methyltransferase | 0.577 | 0.487 | 0.437 | 1.6e-51 |
| TAIR|locus:2173229 SMT1 "sterol methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 851 (304.6 bits), Expect = 4.8e-131, Sum P(2) = 4.8e-131
Identities = 156/177 (88%), Positives = 169/177 (95%)
Query: 8 DLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWG 67
DLAS +GGKIDK++VL+AVEKYE+YHV +GG EEERKANYTDMVNKYYDL TSFYE+GWG
Sbjct: 2 DLASNLGGKIDKSDVLTAVEKYEQYHVFHGGNEEERKANYTDMVNKYYDLATSFYEYGWG 61
Query: 68 ESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVT 127
ESFHFA RWKGESLRESIKRHEHFLALQLG++ GQKVLDVGCGIGGPLREIA+FS++ VT
Sbjct: 62 ESFHFAQRWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVT 121
Query: 128 GLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDA 184
GLNNNEYQITRGKELNR AGVDKTCNFVKADFMKMPFP+NSFDAVYAIEATCHAPDA
Sbjct: 122 GLNNNEYQITRGKELNRLAGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDA 178
|
|
| DICTYBASE|DDB_G0288907 smt1 "putative delta-24-sterol methyltransferase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
Identities = 91/143 (63%), Positives = 108/143 (75%)
Query: 41 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKS 100
+ RK NYT MVN +YDL T FYEFGWG+SFHFA R K ES SI RHE ++A QLGL
Sbjct: 52 QARKNNYTHMVNTFYDLATDFYEFGWGQSFHFATRHKYESFEASIARHEMYMAHQLGLFP 111
Query: 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM 160
G KV+D+GCG+GGP+R IA+FS +V GLNNNEYQI RGK LN AG+ C+F+KADFM
Sbjct: 112 GMKVIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQRGKRLNESAGLSHLCSFIKADFM 171
Query: 161 KMPFPDNSFDAVYAIEATCHAPD 183
+P DN++D Y IEATCHAPD
Sbjct: 172 HVPVEDNTYDCAYQIEATCHAPD 194
|
|
| CGD|CAL0006397 ERG6 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 86/178 (48%), Positives = 119/178 (66%)
Query: 11 SGVGGKIDKTEVLSAV--EKYEKYHVCYGG---EEEERKAN-YTDMVNKYYDLVTSFYEF 64
+G+ I K++ ++V E Y K+ GG ++EE++ N Y+ + + YY+LVT FYE+
Sbjct: 29 TGLSALIAKSKDAASVAAEGYFKHWD--GGISKDDEEKRLNDYSQLTHHYYNLVTDFYEY 86
Query: 65 GWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124
GWG SFHF+ +KGE+ R++ RHEHFLA ++ L KVLDVGCG+GGP REI +F+
Sbjct: 87 GWGSSFHFSRYYKGEAFRQATARHEHFLAHKMNLNENMKVLDVGCGVGGPGREITRFTDC 146
Query: 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAP 182
+ GLNNN+YQI R + +D ++VK DFM+M F SFDAVYAIEAT HAP
Sbjct: 147 EIVGLNNNDYQIERANHYAKKYHLDHKLSYVKGDFMQMDFEPESFDAVYAIEATVHAP 204
|
|
| UNIPROTKB|O74198 ERG6 "Sterol 24-C-methyltransferase" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 86/178 (48%), Positives = 119/178 (66%)
Query: 11 SGVGGKIDKTEVLSAV--EKYEKYHVCYGG---EEEERKAN-YTDMVNKYYDLVTSFYEF 64
+G+ I K++ ++V E Y K+ GG ++EE++ N Y+ + + YY+LVT FYE+
Sbjct: 29 TGLSALIAKSKDAASVAAEGYFKHWD--GGISKDDEEKRLNDYSQLTHHYYNLVTDFYEY 86
Query: 65 GWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124
GWG SFHF+ +KGE+ R++ RHEHFLA ++ L KVLDVGCG+GGP REI +F+
Sbjct: 87 GWGSSFHFSRYYKGEAFRQATARHEHFLAHKMNLNENMKVLDVGCGVGGPGREITRFTDC 146
Query: 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAP 182
+ GLNNN+YQI R + +D ++VK DFM+M F SFDAVYAIEAT HAP
Sbjct: 147 EIVGLNNNDYQIERANHYAKKYHLDHKLSYVKGDFMQMDFEPESFDAVYAIEATVHAP 204
|
|
| POMBASE|SPBC16E9.05 erg6 "sterol 24-C-methyltransferase Erg6" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
Identities = 82/157 (52%), Positives = 109/157 (69%)
Query: 27 EKYEKYHVCYGGEEEERKAN-YTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESI 85
E +++ H E+ R+ + Y +VN YYDL T YE+GW +SFHF+ +KGE+ +SI
Sbjct: 50 EFWDRNHENESEEDRARRIDGYKSVVNSYYDLATDLYEYGWSQSFHFSRFYKGEAFAQSI 109
Query: 86 KRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF 145
RHEH+LA ++G+K G +VLDVGCG+GGP REI +F+ ++ GLNNN+YQI+R
Sbjct: 110 ARHEHYLAYRMGIKPGSRVLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVK 169
Query: 146 AGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAP 182
+DK FVK DFM MPF DN+FD VYAIEAT HAP
Sbjct: 170 RNLDKKQVFVKGDFMHMPFEDNTFDYVYAIEATVHAP 206
|
|
| SGD|S000004467 ERG6 "Delta(24)-sterol C-methyltransferase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 80/143 (55%), Positives = 103/143 (72%)
Query: 40 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLK 99
EE R +Y + + YY++VT FYE+GWG SFHF+ +KGES SI RHEH+LA + G++
Sbjct: 59 EERRLEDYNEATHSYYNVVTDFYEYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGIQ 118
Query: 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF 159
G VLDVGCG+GGP REIA+F+ +V GLNNN+YQI + K + + +FVK DF
Sbjct: 119 RGDLVLDVGCGVGGPAREIARFTGCNVIGLNNNDYQIAKAKYYAKKYNLSDQMDFVKGDF 178
Query: 160 MKMPFPDNSFDAVYAIEATCHAP 182
MKM F +N+FD VYAIEATCHAP
Sbjct: 179 MKMDFEENTFDKVYAIEATCHAP 201
|
|
| ASPGD|ASPL0000068274 AN7146 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 84/147 (57%), Positives = 101/147 (68%)
Query: 41 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKS 100
E R+A Y + YY+L T YE+GWG SFHF GE ++I RHEH+LA Q+G+K
Sbjct: 68 EARRAEYATLTRHYYNLATDLYEYGWGTSFHFCRFAYGEPFYQAIARHEHYLAHQMGIKP 127
Query: 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM 160
G KVLDVGCG+GGP REI +F+ VTGLNNN+YQI R G+ NFVK DFM
Sbjct: 128 GMKVLDVGCGVGGPAREIVKFTDAHVTGLNNNDYQIQRATRYAEREGLSHKLNFVKGDFM 187
Query: 161 KMPFPDNSFDAVYAIEATCHAPDAAEI 187
+M FPDNSFDAVYAIEAT HAP+ A +
Sbjct: 188 QMQFPDNSFDAVYAIEATVHAPELAGV 214
|
|
| UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 89/181 (49%), Positives = 110/181 (60%)
Query: 10 ASGVGGKI--DKTEVLSAVEKYEKYH---VCYGGEEEERKAN---YTDMVNKYYDLVTSF 61
A G+ DK AV++Y K+ EER A Y + YY+L T
Sbjct: 31 AGGIAAMFSKDKEAKKLAVDEYFKHFDNKTAANETPEERAARQKEYATLTRHYYNLATDI 90
Query: 62 YEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF 121
YE+GWG+SFHF ES ++I RHEH+LA Q+G+K G VLDVGCG+GGP REIA+F
Sbjct: 91 YEYGWGQSFHFCRFSHNESFYQAIARHEHYLAHQIGIKEGMTVLDVGCGVGGPAREIAKF 150
Query: 122 SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181
+ +V GLNNN+YQI R + +D FVK DFM+M FPD SFDAVYAIEAT HA
Sbjct: 151 TGCNVVGLNNNDYQIDRATHYAKQEKLDSQLQFVKGDFMQMSFPDESFDAVYAIEATVHA 210
Query: 182 P 182
P
Sbjct: 211 P 211
|
|
| UNIPROTKB|Q5EN22 ERG6 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 74/150 (49%), Positives = 105/150 (70%)
Query: 41 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKS 100
EERKA+Y + +YY+LVT FYE+GWG+SFHF GE+ +I R+EH LA ++G+K
Sbjct: 75 EERKADYATLTRQYYNLVTDFYEYGWGQSFHFCTFAPGETFASAITRYEHTLAHRIGIKK 134
Query: 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGK---ELNRFAGVDKTCNFVKA 157
G KVLD+GCG+GGP R+IA+F+ ++TG+ NEYQ+ R + E+ + G + FV+
Sbjct: 135 GMKVLDIGCGVGGPARQIAKFTGANITGITINEYQVERARRYAEMEGY-GAGEQLKFVQG 193
Query: 158 DFMKMPFPDNSFDAVYAIEATCHAPDAAEI 187
DFM +PF +FDAVY+IEAT HAP ++
Sbjct: 194 DFMALPFEKETFDAVYSIEATVHAPKLEDV 223
|
|
| TAIR|locus:2012938 SMT2 "sterol methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
Identities = 80/183 (43%), Positives = 114/183 (62%)
Query: 6 AFDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEE-ERKANYTDMVNKYYDLVTSFYEF 64
A DL+ GG I +V + Y++Y + +E E D V+ +Y+LVT YE+
Sbjct: 34 AVDLS---GGSISAEKVQ---DNYKQYWSFFRRPKEIETAEKVPDFVDTFYNLVTDIYEW 87
Query: 65 GWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124
GWG+SFHF+P G+S +++ + HE + +K GQK+LDVGCG+GGP+R IA S
Sbjct: 88 GWGQSFHFSPSIPGKSHKDATRLHEEMAVDLIQVKPGQKILDVGCGVGGPMRAIASHSRA 147
Query: 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDA 184
+V G+ NEYQ+ R + N+ AG+D C V +F++MPF DNSFD Y+IEATCHAP
Sbjct: 148 NVVGITINEYQVNRARLHNKKAGLDALCEVVCGNFLQMPFDDNSFDGAYSIEATCHAPKL 207
Query: 185 AEI 187
E+
Sbjct: 208 EEV 210
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LM02 | SMT1_ARATH | 2, ., 1, ., 1, ., 4, 1 | 0.7529 | 0.9737 | 0.8839 | yes | no |
| Q6ZIX2 | SMT1_ORYSJ | 2, ., 1, ., 1, ., 4, 1 | 0.7184 | 0.9901 | 0.8779 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.1.1.41 | 0.979 |
| 3rd Layer | 2.1.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 305 | |||
| pfam08498 | 67 | pfam08498, Sterol_MT_C, Sterol methyltransferase C | 1e-36 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 4e-18 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 2e-17 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 1e-15 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 2e-11 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 1e-10 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 1e-10 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 3e-10 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 6e-10 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 3e-09 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 6e-08 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 9e-07 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 1e-06 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 7e-06 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 1e-05 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 2e-05 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 7e-05 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-04 | |
| pfam01170 | 172 | pfam01170, UPF0020, Putative RNA methylase family | 2e-04 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 2e-04 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 2e-04 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 3e-04 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 5e-04 | |
| pfam07021 | 193 | pfam07021, MetW, Methionine biosynthesis protein M | 0.001 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 0.001 |
| >gnl|CDD|149521 pfam08498, Sterol_MT_C, Sterol methyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-36
Identities = 45/66 (68%), Positives = 55/66 (83%)
Query: 237 SLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYF 296
SL+ FR T VGRF+T NMV ALE +GLAPKGS++V D LE AAEGL AGG+K++FTPM+
Sbjct: 1 SLTIFRTTRVGRFITHNMVGALEKIGLAPKGSKKVTDALEVAAEGLVAGGKKKLFTPMFL 60
Query: 297 FLARKP 302
F+ARKP
Sbjct: 61 FVARKP 66
|
This domain is found to the C-terminus of a methyltransferase domain (pfam08241) in fungal and plant sterol methyltransferases. Length = 67 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 4e-18
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 53 KYYDLVTSFYEFGWGESFH---FAPRWKGESLRES-IKRHEHFLAL----QLGLKSGQKV 104
++YD + +E WGE H + P R++ I+ E LA K +++
Sbjct: 63 EFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRI 122
Query: 105 LDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF 164
+DVGCGIGG R +A+ +V G+ + Q R L G+ +F AD + PF
Sbjct: 123 VDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF 182
Query: 165 PDNSFDAVYAIEATCHAPD 183
D FD V+++E+ H PD
Sbjct: 183 EDGQFDLVWSMESGEHMPD 201
|
Length = 340 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-17
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 105 LDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF 164
LDVGCG G +A+ VTG++ + + ++ FV D +PF
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP-------RKFVVGDAEDLPF 53
Query: 165 PDNSFDAVYAIEATCHAPD 183
PD SFD V + H PD
Sbjct: 54 PDESFDVVVSSLVLHHLPD 72
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-15
Identities = 44/140 (31%), Positives = 60/140 (42%), Gaps = 22/140 (15%)
Query: 38 GEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLG 97
E++E+ D V K YDL+ FG H W+ L LG
Sbjct: 7 DEKQEKVQKVFDKVAKKYDLMNDLMSFG----LHR--LWR------------RALISLLG 48
Query: 98 LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFV 155
+K G KVLDV CG G +A+ + V GL+ +E + +E + + FV
Sbjct: 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVARE--KLKKKGVQNVEFV 106
Query: 156 KADFMKMPFPDNSFDAVYAI 175
D +PFPDNSFDAV
Sbjct: 107 VGDAENLPFPDNSFDAVTIS 126
|
Length = 238 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-11
Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 96 LGLKSGQKVLDVGCGIGGPLREIA-QFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCN 153
L ++ G +VLDVGCG G RE+A + V G++ +E + KE R AG+
Sbjct: 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKE--RAAGLGPNVE 72
Query: 154 FVKADFMKMPFPDNSFDAVYAIEATCHAPD----AAEI 187
FV+ D +PFPD SFDAV + H D AEI
Sbjct: 73 FVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEI 110
|
Length = 241 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-10
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 103 KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM 162
+VLD+GCG G +A VTG++ + + ++ A + +K D ++
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEEL 59
Query: 163 PF-PDNSFDAVYAIEATCHAPD 183
P D SFD + + H +
Sbjct: 60 PPEADESFDVIISDPPLHHLVE 81
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-10
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 104 VLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP 163
+LD+GCG G LR +A+ +SVTG++ ++ + KE R G FV AD +P
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLP 58
Query: 164 FPDNSFDAVYA 174
F + SFD V
Sbjct: 59 FEEGSFDLVIC 69
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-10
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 98 LKSGQKVLDVGCGIGGPLREIAQ--FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFV 155
LKSG KVLD+GCG G +A+ V G++ +E I + KE + G + F+
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYEN-VEFI 59
Query: 156 KADFMKMP---FPDNSFDAVYAIEATCHAPD 183
+ D ++P DNSFD V + E H PD
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHLPD 90
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 6e-10
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTC 152
LG++ G KVLD+ CG G +A+ + V GL+ +E + G+E R G+
Sbjct: 46 WLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNV 105
Query: 153 NFVKADFMKMPFPDNSFDAV 172
FV+ D +PFPDNSFDAV
Sbjct: 106 EFVQGDAEALPFPDNSFDAV 125
|
Length = 239 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-09
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNF 154
+L LK GQKVLDVGCGIGG +A+ V G++ + I+ L R G + F
Sbjct: 261 KLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFA--LERAIGRKCSVEF 318
Query: 155 VKADFMKMPFPDNSFDAVYAIEATCHAPD 183
AD K +PDNSFD +Y+ + H D
Sbjct: 319 EVADCTKKTYPDNSFDVIYSRDTILHIQD 347
|
Length = 475 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 6e-08
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 10/132 (7%)
Query: 54 YYDLVTSFYEFGWGE----SFHFAPRWKGESLRE-SIKRHEHFLALQLGLKSGQKVLDVG 108
+YDL FY S + +L E + + L LGLK G +LD+G
Sbjct: 23 HYDLSNDFYRLFLDPSMTYSCAYFED-PDMTLEEAQRAKLDLILEK-LGLKPGMTLLDIG 80
Query: 109 CGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168
CG GG A+ +V G+ +E Q+ ++ G++ D +
Sbjct: 81 CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD---YRDFEEP 137
Query: 169 FDAVYAIEATCH 180
FD + ++ H
Sbjct: 138 FDRIVSVGMFEH 149
|
Length = 283 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 9e-07
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 101 GQKVLDVGCGIGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF 159
G +VLD G G G L A+ + V G+ + + AG+ V D
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 160 MKMP-FPDNSFDAVYA 174
++ PD SFD V
Sbjct: 61 RELLELPDGSFDLVLG 76
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSST--SVTGL--NNNEYQITRGKELNRFAGVDK 150
+G+ GQKVLDV CG G E+A+ + VTG+ ++ ++ + K + +
Sbjct: 34 LIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKK-----SELPL 88
Query: 151 TCNFVKADFMKMPFPDNSFDAV 172
F++AD +PF DNSFDAV
Sbjct: 89 NIEFIQADAEALPFEDNSFDAV 110
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-06
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 105 LDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKT--CNFVKADFMK 161
LD+GCG G LR + TG++ + + E G+ D +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 162 MPFPDNSFDAVYAIEATCHAPDAAEI 187
+ SFD V A H D +
Sbjct: 61 LDPG--SFDVVVASNVLHHLADPRAV 84
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 52 NKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGI 111
N+Y D YEF +GE + + + K + + L KVLD+G G+
Sbjct: 14 NQYSDEGIKAYEFIFGEDY-----ISSGGIEATTK-----ILSDIELNENSKVLDIGSGL 63
Query: 112 GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKT-CNFVKADFMKMPFPDNSFD 170
GG + I + V G++ E + K N DK F D +K FP+N+FD
Sbjct: 64 GGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS----DKNKIEFEANDILKKDFPENTFD 119
Query: 171 AVYAIEATCHAP 182
+Y+ +A H
Sbjct: 120 MIYSRDAILHLS 131
|
Length = 263 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 23/136 (16%)
Query: 40 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLK 99
+EER + + K YD + S SF +W+ ++++ ++ ++
Sbjct: 3 KEERVHKVFEKIYKKYDRMNSVI------SFQRHKKWRKDTMK------------RMNVQ 44
Query: 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVK 156
+G LDV CG L E A V GL+ +E ++ G++ + AG+ V
Sbjct: 45 AGTSALDVCCGTADWSIALAE-AVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNV-ELVH 102
Query: 157 ADFMKMPFPDNSFDAV 172
+ M++PF DNSFD V
Sbjct: 103 GNAMELPFDDNSFDYV 118
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-05
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 97 GLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNF 154
G+K G K LDV G G ++ SS V GL+ NE + G++ + G F
Sbjct: 44 GVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGK-YNIEF 102
Query: 155 VKADFMKMPFPDNSFDAV 172
++ + ++PF D+SFD V
Sbjct: 103 LQGNAEELPFEDDSFDIV 120
|
Length = 233 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158
G +VLD+GCG G E+A+ F VTG++ + + +E + A + FV+ D
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-ITFVQGD 59
Query: 159 FMKMPFPDNSFDAVYAIEATCHAPD 183
FDAV+ +
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLE 84
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020 | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 65 GWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124
G+ FH AP L+ ++ R LA G K G +LD CG G L E A +
Sbjct: 2 GYRPFFHPAP------LKPTLARAMVNLA---GWKPGDPLLDPMCGSGTILIEAALMGAN 52
Query: 125 SV--TGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172
G + + + + AGV FV+AD K+P + S DA+
Sbjct: 53 IAPLYGSDIDWRMVQGARINAENAGVGDKIEFVQADAAKLPLLNGSVDAI 102
|
This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 103 KVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161
VLD+GCG G R + +F + + + + K + F+ D K
Sbjct: 37 SVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLS-----ENVQFICGDAEK 91
Query: 162 MPFPDNSFDAVYA 174
+P D+SFD + +
Sbjct: 92 LPLEDSSFDLIVS 104
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 103 KVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161
+VLD GCG G L ++A + + G + Q G+E R G+ D K
Sbjct: 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK 61
Query: 162 MPFPDNSFDAVYAIEATCHAPD 183
PFPD +D V+ E H D
Sbjct: 62 DPFPDT-YDLVFGFEVIHHIKD 82
|
Length = 224 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD------ 149
LGLK G +LD+GCG GG +R A+ +V GL ++ Q ++ R A
Sbjct: 58 LGLKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKHARQ--RVAAEGLQRKVE 115
Query: 150 -KTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180
++ DF D FD + ++ H
Sbjct: 116 VLLQDYR--DF------DEPFDRIVSVGMFEH 139
|
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 76 WKG-ESLRESIKRHEHFLAL---QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNN 131
WK ++L E+ E L L +L LK G +VLD+GCG GG R A+ SV G+
Sbjct: 142 WKDADTLEEA---QEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTI 198
Query: 132 NEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175
+ Q +E R AG+ D+ + + FD + ++
Sbjct: 199 SAEQQKLAQE--RCAGLP--VEIRLQDYRDL---NGQFDRIVSV 235
|
Length = 383 |
| >gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 46/168 (27%), Positives = 66/168 (39%), Gaps = 38/168 (22%)
Query: 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQIT-RGKELNR---FA 146
F + + G +VLD+GCG G L L E Q+ RG EL+
Sbjct: 4 FRYIARLIPPGSRVLDLGCGDGSLLY------------LLQEEKQVDGRGIELDAAGVAE 51
Query: 147 GVDKTCNFVKADFMK--MPFPDNSFDAVY---AIEATCHAPDAAEIEIGDGLPDIRSTRK 201
V K + ++ D K FPD SFD V ++AT P E+ D L +R R+
Sbjct: 52 CVAKGLSVIQGDADKGLEHFPDKSFDYVILSQTLQAT-RNPR----EVLDEL--LRIGRR 104
Query: 202 CLEALKQAGF-EVIWE---KDLAPDS---PLPWYLPLDTSHFSLSSFR 242
+ + G V W + P + P WY DT + + R
Sbjct: 105 AIVSFPNFGHWRVRWSLLSRGRMPVTDLLPYTWY---DTPNIHFCTIR 149
|
This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalyzed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalyzed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. Length = 193 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 39.1 bits (88), Expect = 0.001
Identities = 47/240 (19%), Positives = 71/240 (29%), Gaps = 23/240 (9%)
Query: 68 ESFHFAPRWKGESLRESIKRHEHFLALQLG--LKSGQKVLDVGCGIGG-PLREIAQFSST 124
E + L + + + L L+L L G VLD+GCG G L
Sbjct: 14 ELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGA 73
Query: 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP---DNSFDAVYAIEATCHA 181
V G++ + + + AG+ +FV AD + P SFD V ++
Sbjct: 74 YVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVLHLL 132
Query: 182 PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSF 241
P A + R+ L LK G V+ DL D L L
Sbjct: 133 PPAKAL------------RELLRVLKPGGRLVL--SDLLRDGLLEGRLAALLGFGDPVLE 178
Query: 242 RLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301
R +++ G + L R + AR
Sbjct: 179 RGDI--LLELEALLRLELLDLEELLGLLGELELERGGLARLLEELRLLLELLALGLEARG 236
|
Length = 257 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 305 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.97 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.96 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.93 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.92 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.92 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.91 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.91 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.9 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.87 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.87 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.85 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.84 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.83 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.82 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.82 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.81 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.81 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.81 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.8 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.8 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.79 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.79 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.78 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.78 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.77 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.77 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.77 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.76 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.76 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.75 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.75 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.75 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.75 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.72 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.72 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.71 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.71 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.7 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.7 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.7 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.69 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.69 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.69 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 99.68 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.68 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.67 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.66 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.66 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.66 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.66 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.65 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.65 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.65 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.65 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.65 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.65 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.64 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.64 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.62 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.61 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.61 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.61 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.61 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.61 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.6 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.6 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.59 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.59 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.59 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.58 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.58 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.57 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.57 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.56 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.55 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.54 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.54 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.53 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.53 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.53 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.53 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.53 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.51 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.51 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.51 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.51 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.5 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.5 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.5 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.49 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.49 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.49 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.49 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.48 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.48 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.48 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.47 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.47 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.46 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.46 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.45 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.44 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.43 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.42 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.42 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.4 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.4 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.39 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.39 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.39 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.38 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.37 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.37 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.37 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.36 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.36 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.36 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.36 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.36 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.36 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.34 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.34 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.33 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.33 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.33 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.33 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.32 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.32 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.32 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.29 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.28 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.27 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.27 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.26 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.26 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.25 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.25 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.24 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.23 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.22 | |
| PLN02476 | 278 | O-methyltransferase | 99.19 | |
| PLN02366 | 308 | spermidine synthase | 99.16 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.15 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.15 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.14 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.14 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.13 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.13 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.13 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.13 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.12 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.12 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.12 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.11 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.1 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.09 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.09 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.09 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.08 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.07 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.06 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.05 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.04 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.03 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.03 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.02 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.02 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.0 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.98 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.98 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.95 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.95 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.95 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.93 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.92 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.92 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.89 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.89 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.89 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.87 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.86 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.86 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.86 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.85 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.85 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.82 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.82 | |
| PF08498 | 67 | Sterol_MT_C: Sterol methyltransferase C-terminal; | 98.81 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.81 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.8 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.79 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.76 | |
| PLN02823 | 336 | spermine synthase | 98.74 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.74 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.73 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.7 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.7 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.7 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.69 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.68 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.63 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.63 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.63 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.62 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.62 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.6 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.57 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.57 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.54 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.53 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.52 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.52 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.51 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.51 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.5 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.49 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.48 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.48 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.47 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.46 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.45 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.44 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.43 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.42 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.41 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.41 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.36 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.33 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.3 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.29 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.29 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.23 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.19 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.15 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.13 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.13 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.09 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.09 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.05 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.02 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.01 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.0 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.99 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.99 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.99 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.95 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.94 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.93 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.83 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.82 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.81 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.74 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.68 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.65 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.6 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.54 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.44 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.35 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.28 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.24 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.24 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.2 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.18 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.12 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.12 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.08 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.98 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.96 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.89 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.85 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.82 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.81 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.68 | |
| PHA01634 | 156 | hypothetical protein | 96.66 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.55 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.21 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.13 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.11 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.03 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.94 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 95.89 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.85 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.84 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 95.84 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.78 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.76 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.65 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.63 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.61 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.58 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.4 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.35 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 95.31 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.19 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.17 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.11 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.99 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.99 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 94.88 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 94.85 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.82 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.67 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 94.41 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 94.07 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 93.75 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 93.68 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.6 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.59 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 93.56 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 93.51 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 93.37 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 92.79 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 92.75 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 92.7 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 92.32 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.31 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 92.24 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.81 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.61 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 91.47 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 91.41 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 91.13 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 91.08 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 90.88 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 90.82 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 90.7 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 90.2 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 90.19 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 89.92 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 89.9 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 89.54 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 89.52 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 89.45 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 89.43 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 89.07 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 89.02 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 88.86 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 88.73 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 88.65 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 88.63 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 88.24 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 88.16 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 88.07 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 87.99 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 87.97 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 87.49 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 87.33 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 87.14 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 87.03 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 86.97 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 86.75 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 86.43 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 86.29 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 86.27 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 85.78 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 85.69 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 85.45 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 85.17 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 85.11 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 84.45 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 84.03 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 83.94 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 83.42 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 83.35 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 83.15 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 82.83 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 82.63 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 81.98 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 81.66 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 81.25 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 81.07 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 80.62 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 80.04 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=209.41 Aligned_cols=226 Identities=28% Similarity=0.381 Sum_probs=165.6
Q ss_pred cHHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHH
Q 042544 39 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREI 118 (305)
Q Consensus 39 ~~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l 118 (305)
..++..+..++.++..||..++..+.+ .+..| .+.+...+...+|.+|||||||||.++..+
T Consensus 8 ~k~~~v~~vF~~ia~~YD~~n~~~S~g------~~~~W------------r~~~i~~~~~~~g~~vLDva~GTGd~a~~~ 69 (238)
T COG2226 8 EKQEKVQKVFDKVAKKYDLMNDLMSFG------LHRLW------------RRALISLLGIKPGDKVLDVACGTGDMALLL 69 (238)
T ss_pred ccHHHHHHHHHhhHHHHHhhcccccCc------chHHH------------HHHHHHhhCCCCCCEEEEecCCccHHHHHH
Confidence 356778888899999999988777755 22333 344455566668999999999999999999
Q ss_pred Hhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcc
Q 042544 119 AQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIR 197 (305)
Q Consensus 119 ~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~ 197 (305)
++. ..++|+|+|+|+.||+.++++....+... ++|+++|++.+||+|++||+|++++.++++++.+.
T Consensus 70 ~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~----------- 137 (238)
T COG2226 70 AKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDK----------- 137 (238)
T ss_pred HHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHH-----------
Confidence 954 46899999999999999999998877664 99999999999999999999999999999999987
Q ss_pred cHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCccccccc-ccchhHHHHH---HHHHHHHHHhccCCCchHHHHH
Q 042544 198 STRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSF-RLTSVGRFVT---RNMVKALEFVGLAPKGSQRVQD 273 (305)
Q Consensus 198 ~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
+|+|++|+|||||.+++.+..-+ ..+| ....+..++.- .++.+|.+.. .......+.....|.. +++..
T Consensus 138 aL~E~~RVlKpgG~~~vle~~~p---~~~~---~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~-~~l~~ 210 (238)
T COG2226 138 ALKEMYRVLKPGGRLLVLEFSKP---DNPV---LRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQ-EELKQ 210 (238)
T ss_pred HHHHHHHhhcCCeEEEEEEcCCC---Cchh---hHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCH-HHHHH
Confidence 59999999999999999874332 1111 11111111111 3455555443 2222233333445543 77888
Q ss_pred HHHHHHHHHhcCCcccccccceEEEEEcC
Q 042544 274 FLEKAAEGLAAGGRKEIFTPMYFFLARKP 302 (305)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~arKp 302 (305)
++.++||..+. .+.-..+...+.++.|+
T Consensus 211 ~~~~~gf~~i~-~~~~~~G~~~l~~g~K~ 238 (238)
T COG2226 211 MIEKAGFEEVR-YENLTFGIVALHRGYKP 238 (238)
T ss_pred HHHhcCceEEe-eEeeeeeeEEEEEEecC
Confidence 89998887666 22234466678888886
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=208.90 Aligned_cols=222 Identities=27% Similarity=0.444 Sum_probs=90.4
Q ss_pred HHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHH
Q 042544 40 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIA 119 (305)
Q Consensus 40 ~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~ 119 (305)
.++..+..++.++..||..+...+.+ ....|+.. +...+...++.+|||+|||||.++..++
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g------~~~~wr~~------------~~~~~~~~~g~~vLDv~~GtG~~~~~l~ 66 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFG------QDRRWRRK------------LIKLLGLRPGDRVLDVACGTGDVTRELA 66 (233)
T ss_dssp --------------------------------------SH------------HHHHHT--S--EEEEET-TTSHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCc------HHHHHHHH------------HHhccCCCCCCEEEEeCCChHHHHHHHH
Confidence 34556677788899999888776654 34556542 2224456788999999999999999998
Q ss_pred hh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcc
Q 042544 120 QF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIR 197 (305)
Q Consensus 120 ~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~ 197 (305)
+. +.++|+|+|+|+.|++.|++++...+.. +++++++|++++|+++++||+|++.+.++++++...
T Consensus 67 ~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~----------- 134 (233)
T PF01209_consen 67 RRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRER----------- 134 (233)
T ss_dssp GGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHH-----------
T ss_pred HHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHH-----------
Confidence 64 3579999999999999999999887765 899999999999999999999999999999999876
Q ss_pred cHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCccccc-ccccchhHHHHHHHHHHHHHHhc----cCCCchHHHH
Q 042544 198 STRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLS-SFRLTSVGRFVTRNMVKALEFVG----LAPKGSQRVQ 272 (305)
Q Consensus 198 ~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~ 272 (305)
.++|++|+|||||.+++.+..-+. .+ .....+.++ ...++.+|+++..+. ..+.++. -+| +.+++.
T Consensus 135 ~l~E~~RVLkPGG~l~ile~~~p~---~~----~~~~~~~~y~~~ilP~~g~l~~~~~-~~Y~yL~~Si~~f~-~~~~~~ 205 (233)
T PF01209_consen 135 ALREMYRVLKPGGRLVILEFSKPR---NP----LLRALYKFYFKYILPLIGRLLSGDR-EAYRYLPESIRRFP-SPEELK 205 (233)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEB-S---SH----HHHHHHHH---------------------------------------
T ss_pred HHHHHHHHcCCCeEEEEeeccCCC---Cc----hhhceeeeeeccccccccccccccc-cccccccccccccc-cccccc
Confidence 599999999999999998754321 11 111122222 234566777665542 2344332 223 247899
Q ss_pred HHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 273 DFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
.+++++||..+.. +.-.++...+++|.|
T Consensus 206 ~~l~~~Gf~~v~~-~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 206 ELLEEAGFKNVEY-RPLTFGIVTIHVGTK 233 (233)
T ss_dssp -----------------------------
T ss_pred ccccccccccccc-cccccccccccccCC
Confidence 9999999988773 233455566777776
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-25 Score=193.68 Aligned_cols=165 Identities=26% Similarity=0.415 Sum_probs=141.5
Q ss_pred HHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCC---CCccHHHHHHHHHHHHHHHcCC-----CCCCeEEEEcCCCCh
Q 042544 42 ERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRW---KGESLRESIKRHEHFLALQLGL-----KSGQKVLDVGCGIGG 113 (305)
Q Consensus 42 ~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~-----~~~~~vLDiGcG~G~ 113 (305)
....+..+.++.+||..+++|+..||+.+|.+-.- ....+.+++.+..+.+...+.+ .++.+|||||||+|.
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~ 131 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGG 131 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCH
Confidence 34456778899999999999999999988764221 1345777777777777777777 678899999999999
Q ss_pred HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCC
Q 042544 114 PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGL 193 (305)
Q Consensus 114 ~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~ 193 (305)
++..+++..+++|+|+|+|+.|++.++++....+..++++++++|+.++|+++++||+|++..+++|+++...
T Consensus 132 ~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~------- 204 (340)
T PLN02244 132 SSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRK------- 204 (340)
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHH-------
Confidence 9999997557899999999999999999988877777899999999999999999999999999999998765
Q ss_pred CCcccHHHHHHHHHhCCceEEEec
Q 042544 194 PDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 194 ~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++++.++|||||.+++.+.
T Consensus 205 ----~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 205 ----FVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ----HHHHHHHHcCCCcEEEEEEe
Confidence 69999999999999999764
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-24 Score=173.11 Aligned_cols=208 Identities=25% Similarity=0.366 Sum_probs=158.6
Q ss_pred HHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHH
Q 042544 40 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIA 119 (305)
Q Consensus 40 ~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~ 119 (305)
++....+.++.++..||..++..+.+ .++.|+ +.....+++.+++++||++||||..+..+.
T Consensus 58 ke~~V~~vF~~vA~~YD~mND~mSlG------iHRlWK------------d~~v~~L~p~~~m~~lDvaGGTGDiaFril 119 (296)
T KOG1540|consen 58 KERLVHHVFESVAKKYDIMNDAMSLG------IHRLWK------------DMFVSKLGPGKGMKVLDVAGGTGDIAFRIL 119 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcc------hhHHHH------------HHhhhccCCCCCCeEEEecCCcchhHHHHH
Confidence 44445788899999999999888765 334453 344456788899999999999999999998
Q ss_pred hh-cC------CeEEEEcCCHHHHHHHHHHHHhcCCCCC--eEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhc
Q 042544 120 QF-SS------TSVTGLNNNEYQITRGKELNRFAGVDKT--CNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIG 190 (305)
Q Consensus 120 ~~-~~------~~v~gvD~s~~~l~~a~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~ 190 (305)
+. .. .+|+++|+||.||+.++++....++.+. +.++++|++++||++++||+.++.+.+..+++++.
T Consensus 120 ~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k---- 195 (296)
T KOG1540|consen 120 RHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK---- 195 (296)
T ss_pred HhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHH----
Confidence 54 22 7999999999999999999877777554 89999999999999999999999999999999987
Q ss_pred CCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCccccccc-ccchhHHHHHHH---HHHHHHHhccCCC
Q 042544 191 DGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSF-RLTSVGRFVTRN---MVKALEFVGLAPK 266 (305)
Q Consensus 191 ~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~---~~~~~~~~~~~~~ 266 (305)
.+++++|+|||||++.+.+..-....+..|. +..+.+ .++.+|.++... .....+++.-+|.
T Consensus 196 -------~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f-------y~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~ 261 (296)
T KOG1540|consen 196 -------ALREAYRVLKPGGRFSCLEFSKVENEPLKWF-------YDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPP 261 (296)
T ss_pred -------HHHHHHHhcCCCcEEEEEEccccccHHHHHH-------HHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCC
Confidence 5999999999999999887543322222221 111222 356677665432 2233344455565
Q ss_pred chHHHHHHHHHHHHHHhc
Q 042544 267 GSQRVQDFLEKAAEGLAA 284 (305)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~ 284 (305)
. +++..+++++||..+.
T Consensus 262 q-e~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 262 Q-EEFASMIEDAGFSSVN 278 (296)
T ss_pred H-HHHHHHHHHcCCcccc
Confidence 4 7899999999998876
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-24 Score=181.96 Aligned_cols=224 Identities=17% Similarity=0.176 Sum_probs=146.1
Q ss_pred cHHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHH
Q 042544 39 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREI 118 (305)
Q Consensus 39 ~~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l 118 (305)
..++..+.+++.++..||..+++.+.+. .. .+...+...+.+.++.+|||+|||||.++..+
T Consensus 30 ~~~~~v~~~f~~~A~~YD~~~~~~s~g~------~~------------~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~l 91 (261)
T PLN02233 30 KCANERQALFNRIAPVYDNLNDLLSLGQ------HR------------IWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLL 91 (261)
T ss_pred hhHHHHHHHHHHhhhHHHHhhhhhcCCh------hH------------HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHH
Confidence 3666677777889999997665543221 01 11122334566778899999999999999998
Q ss_pred Hhh--cCCeEEEEcCCHHHHHHHHHHHHh--cCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCC
Q 042544 119 AQF--SSTSVTGLNNNEYQITRGKELNRF--AGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLP 194 (305)
Q Consensus 119 ~~~--~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~ 194 (305)
++. +.++|+|+|+|+.|++.|+++... .....+++++++|+.++|+++++||+|++..+++|++++..
T Consensus 92 a~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~-------- 163 (261)
T PLN02233 92 SEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLK-------- 163 (261)
T ss_pred HHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHH--------
Confidence 864 346999999999999999877532 12234799999999999999999999999999999998866
Q ss_pred CcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHHHHHHHhc---cCCCchHHH
Q 042544 195 DIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVG---LAPKGSQRV 271 (305)
Q Consensus 195 ~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~ 271 (305)
+++++.++|||||.+++.+...... ++..+... .+....+.+++..+.. ...+.++. -...+.+++
T Consensus 164 ---~l~ei~rvLkpGG~l~i~d~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~--~~~y~~l~~s~~~f~s~~el 232 (261)
T PLN02233 164 ---AMQEMYRVLKPGSRVSILDFNKSTQ---PFTTSMQE---WMIDNVVVPVATGYGL--AKEYEYLKSSINEYLTGEEL 232 (261)
T ss_pred ---HHHHHHHHcCcCcEEEEEECCCCCc---HHHHHHHH---HHHhhhhhHHHHHhCC--hHHHHHHHHHHHhcCCHHHH
Confidence 6999999999999999987432210 11001000 0000011122211100 01111110 123456889
Q ss_pred HHHHHHHHHHHhcCCcccccccceEEEEE
Q 042544 272 QDFLEKAAEGLAAGGRKEIFTPMYFFLAR 300 (305)
Q Consensus 272 ~~~l~~~~~~~~~~~~~~~~~~~~~~~ar 300 (305)
..+++++||..+..... ......+.+|+
T Consensus 233 ~~ll~~aGF~~~~~~~~-~~g~~~~~~~~ 260 (261)
T PLN02233 233 EKLALEAGFSSAKHYEI-SGGLMGNLVAT 260 (261)
T ss_pred HHHHHHCCCCEEEEEEc-CCCeeEEEEEe
Confidence 99999999987763222 22344566665
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-24 Score=180.50 Aligned_cols=160 Identities=28% Similarity=0.395 Sum_probs=124.3
Q ss_pred HHHHHHHHhhhHHHHHhhcCCccccccC-CC--CccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCC
Q 042544 48 TDMVNKYYDLVTSFYEFGWGESFHFAPR-WK--GESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124 (305)
Q Consensus 48 ~~~~~~~yd~~~~~y~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 124 (305)
.+.++.+||..++||...+|+.++++.- |. ...+.+++.+..+.+++.+++++|.+|||||||.|.++..+++..++
T Consensus 7 ~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~ 86 (273)
T PF02353_consen 7 RENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC 86 (273)
T ss_dssp HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--
T ss_pred HHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc
Confidence 4679999999999999999999998743 33 45689999999999999999999999999999999999999965589
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHH
Q 042544 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE 204 (305)
Q Consensus 125 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (305)
+|+|+++|+.+.+.+++++...|+.+++++...|..+++. +||.|++..+++|+....... +++++.+
T Consensus 87 ~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~---------~f~~~~~ 154 (273)
T PF02353_consen 87 HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPA---------FFRKISR 154 (273)
T ss_dssp EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHH---------HHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHH---------HHHHHHH
Confidence 9999999999999999999999998899999999987643 899999999999997654322 6999999
Q ss_pred HHHhCCceEEEeccC
Q 042544 205 ALKQAGFEVIWEKDL 219 (305)
Q Consensus 205 ~L~~gG~~~i~~~~~ 219 (305)
+|+|||.+++.....
T Consensus 155 ~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 155 LLKPGGRLVLQTITH 169 (273)
T ss_dssp HSETTEEEEEEEEEE
T ss_pred hcCCCcEEEEEeccc
Confidence 999999999876543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=174.74 Aligned_cols=163 Identities=21% Similarity=0.321 Sum_probs=143.5
Q ss_pred hHHHHHHHHHhhhHHHHHhhcCCccccccCCCC-c--cHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc
Q 042544 46 NYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKG-E--SLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS 122 (305)
Q Consensus 46 ~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 122 (305)
...+.++.+||..++||...++++..++..+.. . .+.+++....+.+++.+.+.||++|||||||.|.+++.+|+..
T Consensus 15 ~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y 94 (283)
T COG2230 15 RAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY 94 (283)
T ss_pred chhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc
Confidence 456789999999999999999999888765432 2 5889999999999999999999999999999999999999655
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHH
Q 042544 123 STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKC 202 (305)
Q Consensus 123 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 202 (305)
+.+|+|+++|+++.+.+++++...|+..++++...|..++. +.||.|++..+++|+....... +++.+
T Consensus 95 ~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~---------ff~~~ 162 (283)
T COG2230 95 GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDD---------FFKKV 162 (283)
T ss_pred CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHH---------HHHHH
Confidence 89999999999999999999999999889999999998763 4499999999999998754432 69999
Q ss_pred HHHHHhCCceEEEeccCC
Q 042544 203 LEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 203 ~~~L~~gG~~~i~~~~~~ 220 (305)
.++|+|||.+++.+....
T Consensus 163 ~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 163 YALLKPGGRMLLHSITGP 180 (283)
T ss_pred HhhcCCCceEEEEEecCC
Confidence 999999999999875444
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-23 Score=172.21 Aligned_cols=224 Identities=21% Similarity=0.237 Sum_probs=148.9
Q ss_pred HHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh
Q 042544 41 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120 (305)
Q Consensus 41 ~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 120 (305)
.+...++++.++..||..+.+.+.. . .......++..+.+.++.+|||+|||+|.++..+++
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~------~------------~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~ 65 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQ------R------------HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAE 65 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCC------c------------hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHH
Confidence 3455666777777777765443211 0 111223344567778899999999999999999985
Q ss_pred h--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCccc
Q 042544 121 F--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRS 198 (305)
Q Consensus 121 ~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~ 198 (305)
. ++.+|+|+|+|+.+++.++++....+. ++++++++|+..+++++++||+|++..+++++++... +
T Consensus 66 ~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~-----------~ 133 (231)
T TIGR02752 66 AVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQ-----------V 133 (231)
T ss_pred HhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEecccccCCCHHH-----------H
Confidence 4 457999999999999999999877665 4799999999988888889999999999999988765 5
Q ss_pred HHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHH--HHHHHhccCCCchHHHHHHHH
Q 042544 199 TRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMV--KALEFVGLAPKGSQRVQDFLE 276 (305)
Q Consensus 199 l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 276 (305)
++++.++|+|||.+++.+.... ..+ .....+..+....++..+..+..... ...........+.+++..+++
T Consensus 134 l~~~~~~Lk~gG~l~~~~~~~~----~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 207 (231)
T TIGR02752 134 LREMYRVVKPGGKVVCLETSQP----TIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQ 207 (231)
T ss_pred HHHHHHHcCcCeEEEEEECCCC----CCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999988763221 111 00000000011112222222211000 000111112235578999999
Q ss_pred HHHHHHhcCCcccccccceEEEEEc
Q 042544 277 KAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
++||..+.. .....++.++++|+|
T Consensus 208 ~aGf~~~~~-~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 208 EAGFKDVEV-KSYTGGVAAMHMGFK 231 (231)
T ss_pred HcCCCeeEE-EEcccceEEEEEEEC
Confidence 999988763 333446778899887
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=162.19 Aligned_cols=213 Identities=17% Similarity=0.202 Sum_probs=135.1
Q ss_pred HHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh
Q 042544 41 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120 (305)
Q Consensus 41 ~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 120 (305)
.+..++.++.+++.||..+.+.+.+ ....|+.. ....+... ..++.+|||||||||..+..+++
T Consensus 8 ~~~v~~~f~~iA~~YD~~n~~~s~g------~~~~wr~~--------~~~~l~~~--~~~~~~VLDlGcGtG~~~~~l~~ 71 (226)
T PRK05785 8 WEELQEAYNKIPKAYDRANRFISFN------QDVRWRAE--------LVKTILKY--CGRPKKVLDVAAGKGELSYHFKK 71 (226)
T ss_pred HHHHHHHHHhhhHHHHHhhhhccCC------CcHHHHHH--------HHHHHHHh--cCCCCeEEEEcCCCCHHHHHHHH
Confidence 3455566677888888766544322 11122111 11111111 13467999999999999999986
Q ss_pred hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHH
Q 042544 121 FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTR 200 (305)
Q Consensus 121 ~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 200 (305)
..+.+|+|+|+|+.|++.|+++ ..++++|++.+|+++++||+|++..+++|++++.. .++
T Consensus 72 ~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~-----------~l~ 131 (226)
T PRK05785 72 VFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEK-----------VIA 131 (226)
T ss_pred hcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhccCCHHH-----------HHH
Confidence 5357999999999999998763 24678999999999999999999999999999876 599
Q ss_pred HHHHHHHhCCceEEEeccCCCCCCCCCccccCCCccccc-ccccchhHHHHHHHHHHHHHH----hccCCCchHHHHHHH
Q 042544 201 KCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLS-SFRLTSVGRFVTRNMVKALEF----VGLAPKGSQRVQDFL 275 (305)
Q Consensus 201 ~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~l 275 (305)
++.++|||. +.+.+..- ...+ ..+.++.++ ...++.+|+++..+. ..+.+ ..-+|. .+++..++
T Consensus 132 e~~RvLkp~--~~ile~~~---p~~~----~~~~~~~~y~~~~~P~~~~~~~~~~-~~Y~yl~~si~~f~~-~~~~~~~~ 200 (226)
T PRK05785 132 EFTRVSRKQ--VGFIAMGK---PDNV----IKRKYLSFYLRYIMPYIACLAGAKC-RDYKYIYYIYERLPT-NSFHREIF 200 (226)
T ss_pred HHHHHhcCc--eEEEEeCC---CCcH----HHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCC-HHHHHHHH
Confidence 999999993 22222111 0011 111112222 234455666654332 12332 233444 47888888
Q ss_pred HHHHHHHhcCCcccccccceEEEEEcC
Q 042544 276 EKAAEGLAAGGRKEIFTPMYFFLARKP 302 (305)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~arKp 302 (305)
++++ ..+. .+.-.++...+.+|+|.
T Consensus 201 ~~~~-~~~~-~~~~~~G~~~~~~~~k~ 225 (226)
T PRK05785 201 EKYA-DIKV-YEERGLGLVYFVVGSSR 225 (226)
T ss_pred HHHh-CceE-EEEccccEEEEEEEeeC
Confidence 8874 4443 22334566778999885
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=166.85 Aligned_cols=188 Identities=13% Similarity=0.113 Sum_probs=128.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
+.++.+|||||||+|..+..+++ .++.+|+|+|+|+.|++.|++++...+...+++++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 35778999999999999988875 367899999999999999999998877766899999999987764 4899999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCC-CCCccccCCCcccccccccchhHHHHHHH
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSP-LPWYLPLDTSHFSLSSFRLTSVGRFVTRN 253 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 253 (305)
..+++|+++..... ++++++++|+|||.+++.+........ .++.......+....++....+. .
T Consensus 132 ~~~l~~l~~~~~~~---------~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~-----~ 197 (247)
T PRK15451 132 NFTLQFLEPSERQA---------LLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEIS-----Q 197 (247)
T ss_pred hhHHHhCCHHHHHH---------HHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHH-----H
Confidence 99999998655432 699999999999999998743221111 11100100000000011111111 0
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcCCC
Q 042544 254 MVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQH 304 (305)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp~~ 304 (305)
....++. ...|.+.++...+++++||..+.. .--+.....++|+||+.
T Consensus 198 ~~~~~~~-~~~~~~~~~~~~~L~~aGF~~v~~--~~~~~~f~~~~a~k~~~ 245 (247)
T PRK15451 198 KRSMLEN-VMLTDSVETHKARLHKAGFEHSEL--WFQCFNFGSLVALKAED 245 (247)
T ss_pred HHHHHHh-hcccCCHHHHHHHHHHcCchhHHH--HHHHHhHHHHhheeccc
Confidence 1111111 345677889999999999987662 12223344688888864
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-21 Score=155.25 Aligned_cols=105 Identities=30% Similarity=0.456 Sum_probs=94.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
++.+|||+|||-|.++..+|+. ++.|+|+|+|+.+++.|+..+...++. +++.+..++++....++||+|+|..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 7899999999999999999986 899999999999999999988877664 7788888888765558999999999999
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
|+++++. +++.+.+++||||.+++++.+
T Consensus 136 Hv~dp~~-----------~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 136 HVPDPES-----------FLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred ccCCHHH-----------HHHHHHHHcCCCcEEEEeccc
Confidence 9999988 599999999999999998743
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-20 Score=164.23 Aligned_cols=156 Identities=22% Similarity=0.340 Sum_probs=131.2
Q ss_pred HHHHHHHHHhhhHHHHHhhcCCcccccc-CCC-CccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCC
Q 042544 47 YTDMVNKYYDLVTSFYEFGWGESFHFAP-RWK-GESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124 (305)
Q Consensus 47 ~~~~~~~~yd~~~~~y~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 124 (305)
-.+.++.+||..++||+..++++++++. .|. ...+.+++....+.+...+.+.++.+|||||||+|.++..+++..++
T Consensus 112 ~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~ 191 (383)
T PRK11705 112 AWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV 191 (383)
T ss_pred HHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC
Confidence 3456889999999999999999887764 343 46788889888899999999999999999999999999999976678
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHH
Q 042544 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE 204 (305)
Q Consensus 125 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (305)
+|+|+|+|+.|++.|++++. +. .+++...|..++ +++||+|++..+++|++...... +++++.+
T Consensus 192 ~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~---------~l~~i~r 255 (383)
T PRK11705 192 SVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRT---------YFEVVRR 255 (383)
T ss_pred EEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHH---------HHHHHHH
Confidence 99999999999999999874 22 478888888765 47899999999999997653322 6999999
Q ss_pred HHHhCCceEEEecc
Q 042544 205 ALKQAGFEVIWEKD 218 (305)
Q Consensus 205 ~L~~gG~~~i~~~~ 218 (305)
+|+|||.+++.+..
T Consensus 256 ~LkpGG~lvl~~i~ 269 (383)
T PRK11705 256 CLKPDGLFLLHTIG 269 (383)
T ss_pred HcCCCcEEEEEEcc
Confidence 99999999997654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-20 Score=160.92 Aligned_cols=107 Identities=22% Similarity=0.308 Sum_probs=95.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+...+++++++|++++++++++||+|++..++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 46779999999999999999874 78999999999999999988665444457999999999888878899999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|++++.. +++++.++|||||.+++.+.
T Consensus 209 eHv~d~~~-----------~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVANPAE-----------FCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCCHHH-----------HHHHHHHHcCCCcEEEEEEC
Confidence 99999876 69999999999999999863
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=153.22 Aligned_cols=115 Identities=29% Similarity=0.430 Sum_probs=97.4
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
++..+.+.++.+|||||||+|..+..++...+++|+|+|+|+.|++.|+++... ..++.++++|+...|+++++||+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEE
Confidence 445678889999999999999999999865578999999999999999987643 34799999999988888899999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
|++..+++|++..+... +++++.++|+|||.+++.+..
T Consensus 121 V~s~~~l~h~~~~d~~~---------~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 121 IYSRDAILHLSYADKKK---------LFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEhhhHHhCCHHHHHH---------HHHHHHHHcCCCcEEEEEEec
Confidence 99999999987433222 699999999999999997743
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=148.08 Aligned_cols=189 Identities=28% Similarity=0.384 Sum_probs=127.5
Q ss_pred HHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 94 LQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
..+...++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++...+...++.++.+|+...++++++||+
T Consensus 45 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 124 (239)
T PRK00216 45 KWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDA 124 (239)
T ss_pred HHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccE
Confidence 34455577899999999999999998653 4899999999999999999877655556789999999988777789999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCccccc-ccccchhHHHH
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLS-SFRLTSVGRFV 250 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~ 250 (305)
|++..+++++++... .++++.++|+|||.+++.+....... .. .....+. .......+..+
T Consensus 125 I~~~~~l~~~~~~~~-----------~l~~~~~~L~~gG~li~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~ 186 (239)
T PRK00216 125 VTIAFGLRNVPDIDK-----------ALREMYRVLKPGGRLVILEFSKPTNP------PL-KKAYDFYLFKVLPLIGKLI 186 (239)
T ss_pred EEEecccccCCCHHH-----------HHHHHHHhccCCcEEEEEEecCCCch------HH-HHHHHHHHHhhhHHHHHHH
Confidence 999999999988766 59999999999999988764322110 00 0000000 00011111111
Q ss_pred HHHH--HH-HHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcC
Q 042544 251 TRNM--VK-ALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302 (305)
Q Consensus 251 ~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp 302 (305)
.... .. ...... ...+..++..++.++||..+.... -......+++|+||
T Consensus 187 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~aGf~~~~~~~-~~~~~~~~~~~~~~ 239 (239)
T PRK00216 187 SKNAEAYSYLAESIR-AFPDQEELAAMLEEAGFERVRYRN-LTGGIVALHVGYKP 239 (239)
T ss_pred cCCcHHHHHHHHHHH-hCCCHHHHHHHHHhCCCceeeeee-eecCcEEEEEEecC
Confidence 1100 00 000011 112446799999999999877432 23345578999997
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-19 Score=151.88 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=98.2
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCe
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSF 169 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 169 (305)
.++..+. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+...+++++++|+.+++ +++++|
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f 113 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV 113 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence 3444444 45679999999999999999976 78999999999999999999988887778999999998763 567899
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|+|++..+++|++++.. +++++.++|+|||.+++...
T Consensus 114 D~V~~~~vl~~~~~~~~-----------~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 114 DLILFHAVLEWVADPKS-----------VLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred CEEEehhHHHhhCCHHH-----------HHHHHHHHcCCCeEEEEEEE
Confidence 99999999999998865 59999999999999988653
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=150.79 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=121.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
.++.+|||+|||+|.++..+++. ++++|+|+|+|+.|++.|++++...+...+++++++|+..++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 46789999999999999998853 57899999999999999999987766556799999999988765 48999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCC-CCccccCCCcccccccccchhHHHHHHHH
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPL-PWYLPLDTSHFSLSSFRLTSVGRFVTRNM 254 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 254 (305)
.+++|+++.+... +++++.++|+|||.+++.+......... ++.......+....++....+. ..
T Consensus 130 ~~l~~~~~~~~~~---------~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~ 195 (239)
T TIGR00740 130 FTLQFLPPEDRIA---------LLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEIS-----QK 195 (239)
T ss_pred cchhhCCHHHHHH---------HHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHH-----HH
Confidence 9999998654433 6999999999999999986432211100 0000000000000000000000 00
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 255 VKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
...+ .-...|.+.+++..+++++||..+.. .........++|||
T Consensus 196 ~~~~-~~~~~~~s~~~~~~~l~~aGF~~~~~--~~~~~~~~~~~~~~ 239 (239)
T TIGR00740 196 RTAL-ENVMRTDSIETHKARLKNVGFSHVEL--WFQCFNFGSLVAVK 239 (239)
T ss_pred HHHH-hccCCCCCHHHHHHHHHHcCCchHHH--HHHHHhHhHHheeC
Confidence 0011 11346778899999999999986652 12223334566664
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=132.43 Aligned_cols=107 Identities=25% Similarity=0.344 Sum_probs=89.1
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC-CCCCCCCCCeeEEEecc-
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF-MKMPFPDNSFDAVYAIE- 176 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~- 176 (305)
|+.+|||||||+|.++..+++ .++.+|+|+|+|+.|++.|++++...+..++++++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 578999999999999999996 579999999999999999999997777778999999999 44444 35699999999
Q ss_pred cccccCCh-hhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDA-AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.++++... +.. .+++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~---------~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERR---------RVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHH---------HHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHH---------HHHHHHHHhcCCCcEEEEEE
Confidence 55544432 221 26999999999999999975
|
... |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=131.30 Aligned_cols=95 Identities=33% Similarity=0.535 Sum_probs=82.1
Q ss_pred EEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCCh
Q 042544 105 LDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDA 184 (305)
Q Consensus 105 LDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 184 (305)
||+|||+|..+..+++.++.+|+++|+|+.+++.++++... .++.++++|+.++|+++++||+|++..+++|+++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999976789999999999999999997653 34669999999999999999999999999999666
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 185 AEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
.. +++++.|+|||||+++|
T Consensus 77 ~~-----------~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EA-----------ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HH-----------HHHHHHHHEEEEEEEEE
T ss_pred HH-----------HHHHHHHHcCcCeEEeC
Confidence 55 69999999999999875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=152.68 Aligned_cols=162 Identities=22% Similarity=0.276 Sum_probs=119.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.++.+|||||||+|.++..+++. ++.+|+++|+|+.|++.|+++... .+++++.+|+.++++++++||+|++..+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 46789999999999999988853 467999999999999999887532 3688999999999988899999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHHHH
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKA 257 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 257 (305)
++|++++.. .++++.++|+|||.+++.+.... ..| ..+.+.
T Consensus 188 L~~~~d~~~-----------~L~e~~rvLkPGG~LvIi~~~~p----~~~------------------~~r~~~------ 228 (340)
T PLN02490 188 IEYWPDPQR-----------GIKEAYRVLKIGGKACLIGPVHP----TFW------------------LSRFFA------ 228 (340)
T ss_pred hhhCCCHHH-----------HHHHHHHhcCCCcEEEEEEecCc----chh------------------HHHHhh------
Confidence 999998866 59999999999999988642111 001 000000
Q ss_pred HHHhccCCCchHHHHHHHHHHHHHHhcCCccc----------ccccceEEEEEcCCCC
Q 042544 258 LEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKE----------IFTPMYFFLARKPQHG 305 (305)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~arKp~~~ 305 (305)
+.+.. ..+.+++..+++++||..+...... .+...+.+.++||.+|
T Consensus 229 -~~~~~-~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~~~~~v~~~k~~~~ 284 (340)
T PLN02490 229 -DVWML-FPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPASG 284 (340)
T ss_pred -hhhcc-CCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccceeeEEEEEeccccC
Confidence 00111 1345789999999999765533322 2223356899999754
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=159.73 Aligned_cols=116 Identities=34% Similarity=0.446 Sum_probs=100.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+.+.+.+.++.+|||||||+|..+..++...+++|+|+|+|+.+++.|+++.. +...+++++++|+...++++++|
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCE
Confidence 3344556677888999999999999999986558899999999999999988764 33457999999999888888899
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
|+|++..+++|++++.. ++++++++|+|||.+++.+..
T Consensus 334 D~I~s~~~l~h~~d~~~-----------~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 334 DVIYSRDTILHIQDKPA-----------LFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred EEEEECCcccccCCHHH-----------HHHHHHHHcCCCeEEEEEEec
Confidence 99999999999999876 599999999999999998754
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=145.78 Aligned_cols=113 Identities=18% Similarity=0.267 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 87 RHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 87 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
...+.+...+...++.+|||+|||+|.++..++.. +.+|+++|+|+.|++.++++.. ...++++|++.+|+++
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCC
Confidence 33445555566556789999999999999988864 7899999999999999987632 3578999999999988
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++||+|++..++++.+++.. ++.++.++|+|||.+++...
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~-----------~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLST-----------ALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred CcEEEEEECchhhhcCCHHH-----------HHHHHHHHcCCCeEEEEEeC
Confidence 99999999999999988866 59999999999999998763
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.8e-18 Score=141.44 Aligned_cols=140 Identities=31% Similarity=0.429 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcC--
Q 042544 46 NYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSS-- 123 (305)
Q Consensus 46 ~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-- 123 (305)
..++.++..||..+..+.... .......+...+...++.+|||+|||+|.++..+++...
T Consensus 3 ~~~~~~~~~y~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~ 64 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLLSFGL------------------HRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDR 64 (223)
T ss_pred hHHHHHHhhhhHHHHHHhccc------------------HHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCC
Confidence 456777788887654433110 111223334444555788999999999999999985433
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHH
Q 042544 124 TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCL 203 (305)
Q Consensus 124 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (305)
.+++++|+++.+++.++++.. ...+++++.+|+.+.++++++||+|++..++++.++... +++++.
T Consensus 65 ~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~-----------~l~~~~ 130 (223)
T TIGR01934 65 GKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQK-----------ALREMY 130 (223)
T ss_pred ceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHH-----------HHHHHH
Confidence 599999999999999988765 234689999999988877789999999999999988765 599999
Q ss_pred HHHHhCCceEEEec
Q 042544 204 EALKQAGFEVIWEK 217 (305)
Q Consensus 204 ~~L~~gG~~~i~~~ 217 (305)
+.|+|||.+++.+.
T Consensus 131 ~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 131 RVLKPGGRLVILEF 144 (223)
T ss_pred HHcCCCcEEEEEEe
Confidence 99999999998764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=135.52 Aligned_cols=106 Identities=27% Similarity=0.510 Sum_probs=94.5
Q ss_pred CCCCeEEEEcCCCChHHHHHH-h-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEe
Q 042544 99 KSGQKVLDVGCGIGGPLREIA-Q-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYA 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~-~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~ 174 (305)
+++.+|||+|||+|.++..++ + .++.+++|+|+|+.|++.|++++...+.. +++|+++|+.+++ ++ +.||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence 367899999999999999999 4 35789999999999999999999888876 8999999999977 55 78999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
..+++|++++.. .++++.+.|+++|.+++.+.
T Consensus 80 ~~~l~~~~~~~~-----------~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 80 NGVLHHFPDPEK-----------VLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ESTGGGTSHHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred cCchhhccCHHH-----------HHHHHHHHcCCCcEEEEEEC
Confidence 999999998876 59999999999999998764
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-18 Score=138.10 Aligned_cols=110 Identities=17% Similarity=0.239 Sum_probs=92.4
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.+++++...++. ++++.+.|+..++++ ++||+|++
T Consensus 25 ~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~I~~ 101 (197)
T PRK11207 25 AVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFD-GEYDFILS 101 (197)
T ss_pred hcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcC-CCcCEEEE
Confidence 445556789999999999999999976 789999999999999999988877663 588999999887764 67999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+++|++...... +++++.++|+|||.+++.+
T Consensus 102 ~~~~~~~~~~~~~~---------~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 102 TVVLMFLEAKTIPG---------LIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred ecchhhCCHHHHHH---------HHHHHHHHcCCCcEEEEEE
Confidence 99999887544322 6999999999999966544
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=146.13 Aligned_cols=113 Identities=19% Similarity=0.346 Sum_probs=92.8
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
...++..++.+|||||||+|.++..++......|+|+|+|+.++..++......+...++.++.+|++++|+ +++||+|
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTV 193 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEE
Confidence 334444467899999999999999999754457999999999997665543333334579999999999888 7889999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|..+++|..++.. .++++++.|+|||.+++.+.
T Consensus 194 ~s~~vl~H~~dp~~-----------~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 194 FSMGVLYHRRSPLD-----------HLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred EECChhhccCCHHH-----------HHHHHHHhcCCCcEEEEEEE
Confidence 99999999998866 59999999999999998753
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=130.55 Aligned_cols=107 Identities=25% Similarity=0.320 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeE-EEEcCCCCCC-CCCCCeeEEEeccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCN-FVKADFMKMP-FPDNSFDAVYAIEA 177 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~fD~v~~~~~ 177 (305)
....|||+|||||..-..+-..++.+|+++|+++.|-+.+.+.++... ..++. |++++.+++| ++++++|.|++..+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 334689999999999888875678999999999999999999887763 34566 9999999988 88999999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
++...++.. .++++.++|+|||.+++.++.
T Consensus 155 LCSve~~~k-----------~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 155 LCSVEDPVK-----------QLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EeccCCHHH-----------HHHHHHHhcCCCcEEEEEecc
Confidence 999999976 599999999999999998753
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=142.82 Aligned_cols=102 Identities=27% Similarity=0.354 Sum_probs=87.1
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCC-----CeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK-----TCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
|++|||+|||+|.++..|++. ++.|+|+|+++.|++.|++......... ++++.+.|++... +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 578999999999999999987 8999999999999999999844332222 3677788887753 459999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+++|+.++.. +++.+.+.|+|||.+++.+.
T Consensus 166 evleHV~dp~~-----------~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 166 EVLEHVKDPQE-----------FLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHHhCHHH-----------HHHHHHHHhCCCCceEeeeh
Confidence 99999999987 59999999999999999863
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-18 Score=144.40 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=90.2
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
++..+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|+++ +++++++|+.+++ ++++||
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~fD 91 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKPDTD 91 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCCCce
Confidence 344566678899999999999999999854 578999999999999998762 4789999998774 567899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++..+++|++++.. .++++.++|+|||.+++..
T Consensus 92 ~v~~~~~l~~~~d~~~-----------~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 92 VVVSNAALQWVPEHAD-----------LLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEEehhhhhCCCHHH-----------HHHHHHHhCCCCcEEEEEc
Confidence 9999999999998765 5999999999999998864
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-17 Score=137.34 Aligned_cols=118 Identities=31% Similarity=0.465 Sum_probs=100.5
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP 165 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (305)
+.+.+...+.+.++.+|||+|||+|.++..++.. +.++++|+|+|+.+++.++++... ...++.++.+|+...+++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCCC
Confidence 3345556778888999999999999999999854 457999999999999999887332 235789999999888888
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+++||+|++..+++|++++.. +++++.++|+|||.+++.+.+
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~-----------~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPAR-----------ALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCceEEEEechhhccCCHHH-----------HHHHHHHHhcCCcEEEEEecC
Confidence 889999999999999999866 599999999999999998754
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=144.11 Aligned_cols=111 Identities=24% Similarity=0.309 Sum_probs=96.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
..+.++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++....+.. +++++++|++.+++++++||+|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE
Confidence 45678999999999999988877753 3458999999999999999998877764 78999999999988888999999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+..+++|.++... +++++.++|+|||.+++.+..
T Consensus 152 ~~~v~~~~~d~~~-----------~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 152 SNCVINLSPDKER-----------VFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred EcCcccCCCCHHH-----------HHHHHHHHcCCCcEEEEEEee
Confidence 9999999988765 599999999999999997643
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=144.38 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=91.4
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
...+...++.+|||||||+|.++..++......|+|+|+|+.|+..++......+...++.+...++.+++.. ++||+|
T Consensus 114 l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 114 LPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred HHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEE
Confidence 3345556788999999999999998886534579999999999987644333222235688899999888764 589999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+|.++++|.+++.. .+++++++|+|||.+++.+..
T Consensus 193 ~s~gvL~H~~dp~~-----------~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 193 FSMGVLYHRKSPLE-----------HLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred EEcchhhccCCHHH-----------HHHHHHHhcCCCCEEEEEEEE
Confidence 99999999999866 599999999999999997643
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=135.39 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=89.6
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++++...++. +.+.+.|+...+++ ++||+|++
T Consensus 25 ~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred HhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCCEEEE
Confidence 344445679999999999999999975 789999999999999999988776653 77888888766654 67999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+++|++...... +++++.++|+|||.+++.+
T Consensus 101 ~~~~~~~~~~~~~~---------~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAGRVPE---------IIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHHHHHH---------HHHHHHHHhCCCcEEEEEE
Confidence 99999987544322 6999999999999866654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.4e-17 Score=137.63 Aligned_cols=109 Identities=21% Similarity=0.384 Sum_probs=92.3
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
..++..+.+.++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|+++. .++.++.+|+..+. ++++
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~-~~~~ 93 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ-PPQA 93 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-CCCC
Confidence 34445566778899999999999999999854 5789999999999999998763 35889999998764 4568
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++..+++|+++... .++++.++|+|||.+++..
T Consensus 94 fD~v~~~~~l~~~~d~~~-----------~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 94 LDLIFANASLQWLPDHLE-----------LFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccEEEEccChhhCCCHHH-----------HHHHHHHhcCCCcEEEEEC
Confidence 999999999999998765 5999999999999998864
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-18 Score=133.62 Aligned_cols=99 Identities=35% Similarity=0.574 Sum_probs=82.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++. ..+.....+....+.++++||+|++..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 567889999999999999999876 6799999999999986 1244444444444556789999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
++|++++.. +++++.++|+|||.+++.+...
T Consensus 88 l~~~~d~~~-----------~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 88 LEHLPDPEE-----------FLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp GGGSSHHHH-----------HHHHHHHCEEEEEEEEEEEEBT
T ss_pred HhhcccHHH-----------HHHHHHHhcCCCCEEEEEEcCC
Confidence 999998766 6999999999999999987543
|
... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=127.27 Aligned_cols=103 Identities=24% Similarity=0.284 Sum_probs=87.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
.++++.+|||+|||+|..+..++. .++++|+++|+|+.|++.|+++++..+.. +++++++|+.+++. +++||+|++.
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-~~~fDlV~~~ 119 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-EEKFDVVTSR 119 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-CCCccEEEEc
Confidence 344588999999999999999984 56789999999999999999999988875 49999999998766 6789999986
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
. +.+... +++.+.+.|+|||.+++..
T Consensus 120 ~----~~~~~~-----------~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 120 A----VASLSD-----------LVELCLPLLKPGGRFLALK 145 (187)
T ss_pred c----ccCHHH-----------HHHHHHHhcCCCeEEEEEe
Confidence 4 223322 5899999999999999864
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-17 Score=121.72 Aligned_cols=96 Identities=28% Similarity=0.413 Sum_probs=80.3
Q ss_pred EEEEcCCCChHHHHHHhhc----CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc-cc
Q 042544 104 VLDVGCGIGGPLREIAQFS----STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE-AT 178 (305)
Q Consensus 104 vLDiGcG~G~~~~~l~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 178 (305)
|||+|||+|..+..+++.. ..+++|+|+|+.|++.++++....+. +++++++|+.++++.+++||+|++.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999652 38999999999999999999877655 68999999999888788999999955 59
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCC
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAG 210 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG 210 (305)
+|+.+.+... +++++.++|+|||
T Consensus 79 ~~~~~~~~~~---------ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEA---------LLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHH---------HHHHHHHTEEEEE
T ss_pred CCCCHHHHHH---------HHHHHHHHhCCCC
Confidence 9988776644 6999999999998
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=126.88 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=87.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
....++.++||+|||.|..++.||+. |..|+++|+|+..++.+++.+...+++ ++..+.|+....++ +.||+|++.
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~st 101 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIVST 101 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEEEE
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEEEE
Confidence 44456679999999999999999987 899999999999999999888877764 99999999887775 679999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+++|++.+.... .++.+.+.++|||+.++...
T Consensus 102 ~v~~fL~~~~~~~---------i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 102 VVFMFLQRELRPQ---------IIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp SSGGGS-GGGHHH---------HHHHHHHTEEEEEEEEEEEE
T ss_pred EEeccCCHHHHHH---------HHHHHHhhcCCcEEEEEEEe
Confidence 9999998765432 58888999999999888654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-16 Score=136.46 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=88.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.+++++...++ ++++.+.|+...++ +++||+|++..+++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~ 195 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLM 195 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhh
Confidence 4459999999999999999975 78999999999999999999887766 58889999887655 67899999999999
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|++...... +++++.++|+|||++++..
T Consensus 196 ~l~~~~~~~---------~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 196 FLNRERIPA---------IIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred hCCHHHHHH---------HHHHHHHhcCCCcEEEEEE
Confidence 987544322 6999999999999977654
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-16 Score=136.50 Aligned_cols=120 Identities=23% Similarity=0.259 Sum_probs=101.1
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
.+.+...+.+.++.+|||||||+|.++..+++ .|+.+++++|. +.+++.+++++...++.++++++.+|+.+.+++.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~- 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE- 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC-
Confidence 34555667778889999999999999999984 57789999998 7999999999998888888999999998766653
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+|+|++..++|++++..... .+++++++|+|||.+++.+..+.
T Consensus 216 -~D~v~~~~~lh~~~~~~~~~---------il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 216 -ADAVLFCRILYSANEQLSTI---------MCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred -CCEEEeEhhhhcCChHHHHH---------HHHHHHHhcCCCCEEEEEEeccC
Confidence 69999999999887765433 69999999999999999886443
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=133.47 Aligned_cols=104 Identities=28% Similarity=0.441 Sum_probs=92.5
Q ss_pred CeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc
Q 042544 102 QKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 180 (305)
.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.+++++...++..+++++..|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 37999999999999999854 46899999999999999999998888888899999999776664 58999999999999
Q ss_pred cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 181 APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++... +++++.++|+|||.+++.+.
T Consensus 80 ~~~~~~-----------~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 IKDKMD-----------LFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CCCHHH-----------HHHHHHHHcCCCCEEEEEEc
Confidence 988755 69999999999999999865
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=131.11 Aligned_cols=114 Identities=20% Similarity=0.237 Sum_probs=89.9
Q ss_pred HHHHHHHHHcC--CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 042544 87 RHEHFLALQLG--LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF 164 (305)
Q Consensus 87 ~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 164 (305)
.....+...+. ..++.+|||+|||+|.++..++.. +.+|+|+|+|+.|++.|++++...+...++.+.++|+..++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence 33344444444 557889999999999999999875 67999999999999999999877665557999999998765
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
++||+|++..+++|++...... .+.++.+++++++.+.
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~---------~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAK---------ALGHLASLTKERVIFT 155 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHH---------HHHHHHHHhCCCEEEE
Confidence 7899999999999987654322 5888888887554433
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=146.01 Aligned_cols=115 Identities=22% Similarity=0.299 Sum_probs=93.0
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDA 171 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 171 (305)
.++..++.+|||+|||+|..+..+++ .++.+|+|+|+|+.|++.|+++....+ .+++++++|+.++| +++++||+
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEE
Confidence 34445688999999999999998884 578899999999999999998765443 35788999998877 77899999
Q ss_pred EEecccccccCC-----------hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 172 VYAIEATCHAPD-----------AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 172 v~~~~~l~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
|+++.++|++.+ ... ..+++++.++|||||.+++.+..++
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl---------~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVI---------KKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHH---------HHHHHHHHHHcCCCcEEEEEeCccC
Confidence 999998887532 111 2369999999999999999875544
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=140.50 Aligned_cols=269 Identities=36% Similarity=0.574 Sum_probs=196.4
Q ss_pred HHHHHHhhhccCCCcHHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeE
Q 042544 25 AVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKV 104 (305)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 104 (305)
.+..|.++.+.....++.....+.+.++++|+...++|...|+..+|+++.+......+...++...........++..+
T Consensus 35 ~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (364)
T KOG1269|consen 35 SVDNYLTFIKKNAEINAEETEDLPEQIAKYYNNSTDLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKV 114 (364)
T ss_pred hhhhHhhhhhhhcccccccccccchHHHHHhcccchhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccc
Confidence 34555555554555555558888999999999999999999999999998866554444433333333334456778899
Q ss_pred EEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCCh
Q 042544 105 LDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDA 184 (305)
Q Consensus 105 LDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 184 (305)
+|+|||-|.....++....+.++|+|.++..+..+.......++..+..++.+|+...|++++.||.+.+..+.+|.++.
T Consensus 115 ~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~ 194 (364)
T KOG1269|consen 115 LDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDL 194 (364)
T ss_pred cccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcH
Confidence 99999999999999987679999999999999999888877778777888999999999999999999999999999999
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC--------------------------------------------
Q 042544 185 AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA-------------------------------------------- 220 (305)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~-------------------------------------------- 220 (305)
.. .+.+++++++|||++++.+....
T Consensus 195 ~~-----------~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~ 263 (364)
T KOG1269|consen 195 EK-----------VYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHL 263 (364)
T ss_pred HH-----------HHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchhh
Confidence 87 59999999999999876432111
Q ss_pred -------CCCCCCCccccCCC-cccccc---cccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCccc
Q 042544 221 -------PDSPLPWYLPLDTS-HFSLSS---FRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKE 289 (305)
Q Consensus 221 -------~~~~~~~~~~~~~~-~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (305)
...+.||..|..+. ...+.. +.....++..........+.++..|.+..+...++..+...+.......
T Consensus 264 ~~~~dl~~~~s~~w~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~p~gs~~~~~~~~~~~~~l~~~~e~~ 343 (364)
T KOG1269|consen 264 KLEKDLALKSSFPWNTPLTRDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGLPEGSSDFAKYIAQAAVGLKRGGETG 343 (364)
T ss_pred hhcccccCCCccccccccchhheeecccccHHHHhHhhccCcCceEEehhhcCcCCcCcchHHHHHHhhhhhceeccccc
Confidence 00111233333200 000000 0011112222222334556677788888899999999999999988888
Q ss_pred ccccceEE-EEEcCCC
Q 042544 290 IFTPMYFF-LARKPQH 304 (305)
Q Consensus 290 ~~~~~~~~-~arKp~~ 304 (305)
+|.+..+. +++||..
T Consensus 344 gF~~~~~~~~~~k~~~ 359 (364)
T KOG1269|consen 344 GFTPVDIEDVTDKPEE 359 (364)
T ss_pred CcccceeeEccccchh
Confidence 89998887 9999863
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-16 Score=127.65 Aligned_cols=111 Identities=19% Similarity=0.132 Sum_probs=91.6
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
...+...+.+.++.+|||+|||+|..+..+++.. .++|+++|+++.+++.|++++...+...+++++.+|+.+.....
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 4455667778888999999999999999988642 47999999999999999999988877667999999998754445
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+||+|++..++.+++ +++.+.|+|||.+++..
T Consensus 141 ~~fD~Ii~~~~~~~~~-----------------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 141 APFDAIIVTAAASTIP-----------------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCccEEEEccCcchhh-----------------HHHHHhcCcCcEEEEEE
Confidence 7899999988776543 45778999999998854
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=123.38 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=87.6
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
.+...+.+.++.+|||+|||+|.++..+++ .++.+|+++|+|+.+++.+++++...++. +++++.+|+.. ++ .++|
T Consensus 22 ~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~-~~~~ 98 (187)
T PRK08287 22 LALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-EL-PGKA 98 (187)
T ss_pred HHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hc-CcCC
Confidence 344566777889999999999999999985 45689999999999999999998877764 68999998753 34 3579
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++.....++. . .++.+.+.|+|||.+++..
T Consensus 99 D~v~~~~~~~~~~---~-----------~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 99 DAIFIGGSGGNLT---A-----------IIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CEEEECCCccCHH---H-----------HHHHHHHhcCCCeEEEEEE
Confidence 9999876544332 1 4888999999999998854
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-17 Score=129.74 Aligned_cols=194 Identities=16% Similarity=0.204 Sum_probs=131.3
Q ss_pred HHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEE
Q 042544 50 MVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGL 129 (305)
Q Consensus 50 ~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv 129 (305)
-+...||..++.|+..+-+++.|.- . .....++..++..+-.++||+|||||.....+... ..+++|+
T Consensus 86 YVe~LFD~~Ae~Fd~~LVdkL~Y~v---P--------~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGv 153 (287)
T COG4976 86 YVETLFDQYAERFDHILVDKLGYSV---P--------ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGV 153 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc---H--------HHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCC
Confidence 3566677777777776666665541 1 12223333556666789999999999999998865 5789999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHH
Q 042544 130 NNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALK 207 (305)
Q Consensus 130 D~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 207 (305)
|||..|++.|.++ ++- -.+.++++..+ + ..++.||+|++..|+.++.+.+. ++.-+...|+
T Consensus 154 DiS~nMl~kA~eK----g~Y--D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~-----------~~~~aa~~L~ 216 (287)
T COG4976 154 DISENMLAKAHEK----GLY--DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEG-----------LFAGAAGLLA 216 (287)
T ss_pred chhHHHHHHHHhc----cch--HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhh-----------HHHHHHHhcC
Confidence 9999999999875 221 13445555432 2 45678999999999999998876 4888999999
Q ss_pred hCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCc
Q 042544 208 QAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGR 287 (305)
Q Consensus 208 ~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 287 (305)
|||.+.++..+.... | .|.+.+-.|+. .+..-++..+...|++++...+
T Consensus 217 ~gGlfaFSvE~l~~~----~------------~f~l~ps~RyA---------------H~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 217 PGGLFAFSVETLPDD----G------------GFVLGPSQRYA---------------HSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred CCceEEEEecccCCC----C------------Ceecchhhhhc---------------cchHHHHHHHHhcCceEEEeec
Confidence 999999987655422 1 12222222221 1223456777788887766443
Q ss_pred cc------ccccceEEEEEcCC
Q 042544 288 KE------IFTPMYFFLARKPQ 303 (305)
Q Consensus 288 ~~------~~~~~~~~~arKp~ 303 (305)
+. ...+..+++|||+.
T Consensus 266 ttiR~d~g~pv~G~L~iark~~ 287 (287)
T COG4976 266 TTIRRDAGEPVPGILVIARKKA 287 (287)
T ss_pred ccchhhcCCCCCCceEEEecCC
Confidence 32 35677899999974
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-16 Score=124.45 Aligned_cols=105 Identities=20% Similarity=0.387 Sum_probs=92.5
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
..++.+..+|.|+|||+|..+..++ +.|++.++|+|-|+.|++.|+++. .+++|..+|+..+. ++..+|+++
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~-p~~~~dllf 97 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK-PEQPTDLLF 97 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC-CCCccchhh
Confidence 4566778899999999999999999 568999999999999999997763 46899999999875 356799999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++.+++++|+... .+..+...|.|||++.+...
T Consensus 98 aNAvlqWlpdH~~-----------ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 98 ANAVLQWLPDHPE-----------LLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred hhhhhhhccccHH-----------HHHHHHHhhCCCceEEEECC
Confidence 9999999999866 59999999999999999754
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=123.22 Aligned_cols=102 Identities=23% Similarity=0.351 Sum_probs=82.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
++++.+|||+|||+|.++..+++. ++.+++|+|+|+.|++.|+++. .++.+.++|+.+ |+++++||+|++..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 456779999999999999999864 5789999999999999998753 246788999988 88889999999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++|++.....+ .++++.+++ ++++++.+.
T Consensus 114 vL~hl~p~~~~~---------~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 114 VLIHINPDNLPT---------AYRELYRCS--NRYILIAEY 143 (204)
T ss_pred hhhhCCHHHHHH---------HHHHHHhhc--CcEEEEEEe
Confidence 999997443322 577787776 556777664
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-16 Score=126.48 Aligned_cols=110 Identities=22% Similarity=0.311 Sum_probs=87.8
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCCCCCe
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFPDNSF 169 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~f 169 (305)
...+.+.++.+|||+|||+|.++..++.. +..+|+++|+++.+++.+++++...++.+++.++.+|+.+. +..++.|
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 44678889999999999999999998853 35799999999999999999998887656899999999763 3234679
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++... ..+... .++.+.+.|+|||.+++..
T Consensus 113 D~V~~~~~---~~~~~~-----------~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 113 DRIFIGGG---SEKLKE-----------IISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CEEEECCC---cccHHH-----------HHHHHHHHcCCCcEEEEEe
Confidence 99998542 122222 5899999999999998743
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-16 Score=122.15 Aligned_cols=98 Identities=20% Similarity=0.316 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-CCCCCCeeEEEec
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-PFPDNSFDAVYAI 175 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~v~~~ 175 (305)
++|+.+|||+|||.|.+...|.+..+.++.|+|+++..+..+.++ .+.++++|+++ + .|++++||.|+.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 468999999999999999999976689999999999998877663 47799999987 4 4899999999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+++++.+++. .++++.|+ |...+++-+
T Consensus 83 qtLQ~~~~P~~-----------vL~EmlRV---gr~~IVsFP 110 (193)
T PF07021_consen 83 QTLQAVRRPDE-----------VLEEMLRV---GRRAIVSFP 110 (193)
T ss_pred hHHHhHhHHHH-----------HHHHHHHh---cCeEEEEec
Confidence 99999999877 36666555 666666544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=122.16 Aligned_cols=100 Identities=21% Similarity=0.301 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
++.+|||+|||+|..+..++. .+.++|+|+|+|+.|++.++++++..+.. +++++++|+.+++ .+++||+|++.. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITSRA-L 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEehh-h
Confidence 478999999999999999884 35689999999999999999998887764 6999999998864 357899999865 3
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++++ .++.+.++|+|||.+++..
T Consensus 119 ~~~~~--------------~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 ASLNV--------------LLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred hCHHH--------------HHHHHHHhcCCCCEEEEEc
Confidence 33322 4788899999999998863
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-15 Score=113.37 Aligned_cols=111 Identities=20% Similarity=0.181 Sum_probs=88.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNS 168 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~ 168 (305)
.+...+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.+++++...+.. +++++.+|+.. ++...++
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCC
Confidence 3444566777889999999999999999964 5689999999999999999988877654 68999998765 3333468
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++.....+.. . +++++.+.|+|||.+++..
T Consensus 89 ~D~v~~~~~~~~~~---~-----------~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 89 PDRVFIGGSGGLLQ---E-----------ILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCEEEECCcchhHH---H-----------HHHHHHHHcCCCCEEEEEe
Confidence 99999876543321 1 6999999999999998864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=120.37 Aligned_cols=114 Identities=20% Similarity=0.301 Sum_probs=87.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..+...++-..-.++||+|||.|.++..|+.. ..+++++|+|+..++.|+++.... ++++++++|+... .|+++|
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~F 107 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRF 107 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-E
T ss_pred HHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCe
Confidence 34444566667789999999999999999976 579999999999999999988643 4799999999774 567999
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|+++.+++++.+.+... .+++.+.+.|+|||.+++.+
T Consensus 108 DLIV~SEVlYYL~~~~~L~--------~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLR--------AALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEEEEES-GGGSSSHHHHH--------HHHHHHHHTEEEEEEEEEEE
T ss_pred eEEEEehHhHcCCCHHHHH--------HHHHHHHHHhCCCCEEEEEE
Confidence 9999999999998754321 15889999999999999965
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.4e-16 Score=131.80 Aligned_cols=111 Identities=13% Similarity=0.206 Sum_probs=87.1
Q ss_pred CCCCCCeEEEEcCCCChH----HHHHHhh-c-----CCeEEEEcCCHHHHHHHHHHHHh----cC---------------
Q 042544 97 GLKSGQKVLDVGCGIGGP----LREIAQF-S-----STSVTGLNNNEYQITRGKELNRF----AG--------------- 147 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~----~~~l~~~-~-----~~~v~gvD~s~~~l~~a~~~~~~----~~--------------- 147 (305)
...++.+|+|+|||||.- +..+++. + +.+|+|+|+|+.|++.|++.+-. .+
T Consensus 96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence 344567999999999973 4444432 2 46899999999999999885310 00
Q ss_pred -------CCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 148 -------VDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 148 -------~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+..++.|.+.|+.+.++++++||+|+|.++++|++++...+ +++++.++|+|||++++..
T Consensus 176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~---------~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRK---------LLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHH---------HHHHHHHHhCCCeEEEEEC
Confidence 12468999999998777788999999999999998766533 6999999999999999964
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=127.55 Aligned_cols=102 Identities=23% Similarity=0.312 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.+.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.. +++.++.+|+...++++++||+|++..++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL 108 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence 4579999999999999999854 46789999999999998887643 36889999999988888999999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|++++.. ++.++.++|+|||.+++.+.
T Consensus 109 ~~~~~~~~-----------~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 109 QWCDDLSQ-----------ALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhccCHHH-----------HHHHHHHHcCCCcEEEEEeC
Confidence 99988766 59999999999999998753
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-15 Score=122.89 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP 165 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (305)
....+...+.+.++.+|||||||+|..+..+++.. .++|+++|+++.+++.+++++...+. .+++++++|+.....+
T Consensus 64 ~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCc
Confidence 34556667788899999999999999999988653 47999999999999999999988776 4799999999875555
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.++||+|++.....++ ...+.+.|+|||.+++..
T Consensus 143 ~~~fD~I~~~~~~~~~-----------------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 143 NAPYDRIYVTAAGPDI-----------------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCEEEECCCcccc-----------------hHHHHHhhCCCcEEEEEE
Confidence 6889999987665432 445677899999988854
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-17 Score=120.60 Aligned_cols=96 Identities=28% Similarity=0.395 Sum_probs=62.9
Q ss_pred EEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEeccccccc
Q 042544 105 LDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYAIEATCHA 181 (305)
Q Consensus 105 LDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~ 181 (305)
||||||+|.++..+.+. +..+++|+|+|+.|++.+++++...+.. .......+..+.. ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999854 6789999999999999998888776532 2334443333321 122589999999999999
Q ss_pred CChhhhhhcCCCCCcccHHHHHHHHHhCCce
Q 042544 182 PDAAEIEIGDGLPDIRSTRKCLEALKQAGFE 212 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~ 212 (305)
++... +++++.++|+|||++
T Consensus 80 ~~~~~-----------~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEA-----------VLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHH-----------HHHHHTTT-TSS-EE
T ss_pred hhHHH-----------HHHHHHHHcCCCCCC
Confidence 77765 699999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-15 Score=121.64 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=86.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc-----------CCCCCeEEEEcCCCCCCCC-C
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA-----------GVDKTCNFVKADFMKMPFP-D 166 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~-~ 166 (305)
+++.+|||+|||.|..+..||++ +.+|+|+|+|+.+++.+.+..... ....+++++++|+.+++.. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 56789999999999999999986 899999999999999864422100 0123689999999887642 3
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+.||.|+-..+++|++...... .++.+.++|+|||.+++...
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~---------~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQR---------YAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCcCEEEechhhccCCHHHHHH---------HHHHHHHHcCCCCeEEEEEE
Confidence 5799999999999998766533 69999999999998766654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=122.46 Aligned_cols=97 Identities=20% Similarity=0.286 Sum_probs=79.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+...++.+.++|+. ..+++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcch
Confidence 456789999999999999999875 67899999999999999999877766567899999953 34678999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHH
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALK 207 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 207 (305)
++|++++.... .++++.+.++
T Consensus 137 l~~~~~~~~~~---------~l~~l~~~~~ 157 (230)
T PRK07580 137 LIHYPQEDAAR---------MLAHLASLTR 157 (230)
T ss_pred hhcCCHHHHHH---------HHHHHHhhcC
Confidence 99988765432 4677776654
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=121.06 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=89.4
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
...+...+.+.++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++...++ ++++++++|+.......
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCccc
Confidence 3455566788899999999999999999998653 35799999999999999999998887 47999999998754345
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|++.....+ ....+.+.|+|||++++..
T Consensus 145 ~~fD~Ii~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 145 APYDRIYVTAAGPK-----------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCCCEEEEcCCccc-----------------ccHHHHHhcCcCcEEEEEE
Confidence 68999998765433 2455778999999998864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=111.34 Aligned_cols=138 Identities=21% Similarity=0.281 Sum_probs=101.0
Q ss_pred cCCCCccHHHHHHHHHHHHHHHc---CCCCCC-eEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCC
Q 042544 74 PRWKGESLRESIKRHEHFLALQL---GLKSGQ-KVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGV 148 (305)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~-~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~ 148 (305)
..|...... .+..+++.... .+.+.. +|||+|||.|.++..|++. ....++|+|.|+.+++.|+..+++.+.
T Consensus 40 EvWFg~~ae---~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~ 116 (227)
T KOG1271|consen 40 EVWFGEDAE---ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF 116 (227)
T ss_pred ceecCCcHH---HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC
Confidence 345554333 34444554433 344444 9999999999999999953 356799999999999999999999998
Q ss_pred CCCeEEEEcCCCCCCCCCCCeeEEEeccccccc---CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 149 DKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA---PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 149 ~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
.+.|+|.+.|+....+..++||+|+--..+..+ |+...-+ ....+..+.+.|+|||+++|...++.
T Consensus 117 ~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r------~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 117 SNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGR------LVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred CcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccc------eeeehhhHhhccCCCcEEEEEecCcc
Confidence 878999999999877778899999865544332 2211100 02268889999999999999876654
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-15 Score=122.04 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=86.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC-CCCC--CCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF-MKMP--FPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~fD~v~~~ 175 (305)
++.+|||+|||+|.++..+++. ++.+|+|+|+|+.|++.+++++...+. .++.++++|+ ..++ +++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6789999999999999999854 567999999999999999999887766 5799999999 6665 667889999986
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+....... .......+++++.++|+|||.+++..
T Consensus 119 ~~~p~~~~~~~~---~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHK---RRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccc---cccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 543322111000 00001226999999999999999865
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-15 Score=123.83 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=82.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhh-----cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQF-----SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
...++.+|||+|||+|.++..+++. ++.+|+|+|+|+.|++.|+++... .++.+.+.+...++.++++||+
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~~~~~~fD~ 132 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELVAEGERFDV 132 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEecccccccCCCccE
Confidence 3356789999999999999888742 246999999999999999886532 2467777777777777789999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+++.+++|+++++... +++++.++++ |.+++.+
T Consensus 133 V~~~~~lhh~~d~~~~~---------~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVR---------LLADSAALAR--RLVLHND 166 (232)
T ss_pred EEECCeeecCChHHHHH---------HHHHHHHhcC--eeEEEec
Confidence 99999999999875422 6999999987 5555543
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-14 Score=120.06 Aligned_cols=113 Identities=26% Similarity=0.414 Sum_probs=93.9
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~ 168 (305)
.++...+...++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+. .+.++..|+.+.+ ..++.
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 114 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQ 114 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCC
Confidence 44544555567889999999999999988875 78999999999999999988776554 4788888887754 34578
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++..+++|.+++.. +++.+.+.|+|||.+++..
T Consensus 115 fD~Ii~~~~l~~~~~~~~-----------~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 115 FDVVTCMEMLEHVPDPAS-----------FVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccEEEEhhHhhccCCHHH-----------HHHHHHHHcCCCcEEEEEe
Confidence 999999999999998866 5899999999999998865
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.9e-15 Score=136.13 Aligned_cols=115 Identities=24% Similarity=0.310 Sum_probs=93.6
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC--CCCCCCCe
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK--MPFPDNSF 169 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~f 169 (305)
+...+...++.+|||||||+|.++..+++. ..+|+|+|+|+.|++.+++.. +...++.++++|+.. +++++++|
T Consensus 29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 29 ILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred HHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCCCCE
Confidence 334555556789999999999999999976 679999999999998876532 223578999999963 67788899
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
|+|++..+++|+++..... +++++.++|+|||++++.+...
T Consensus 105 D~I~~~~~l~~l~~~~~~~---------~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVEN---------LAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred EEEehhhhHHhCCHHHHHH---------HHHHHHHhcCCCeEEEEEeccC
Confidence 9999999999998865332 6999999999999999977543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-14 Score=123.59 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV----DKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++....+. ..++.|.+.|+..+ +++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 5789999999999999999976 78999999999999999998765421 23578888888654 4789999999
Q ss_pred ccccccCChhh
Q 042544 176 EATCHAPDAAE 186 (305)
Q Consensus 176 ~~l~~~~~~~~ 186 (305)
.+++|+++...
T Consensus 220 ~vL~H~p~~~~ 230 (315)
T PLN02585 220 DVLIHYPQDKA 230 (315)
T ss_pred CEEEecCHHHH
Confidence 99999987643
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-14 Score=123.44 Aligned_cols=94 Identities=24% Similarity=0.397 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-c---CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-S---STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
+..+|||+|||+|.++..+++. + +..++|+|+|+.|++.|+++. +++.+.++|+.++|+++++||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 5578999999999999998853 2 247999999999999987752 35889999999999999999999986
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.. +. .++++.++|+|||.+++...
T Consensus 159 ~~----~~--------------~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 159 YA----PC--------------KAEELARVVKPGGIVITVTP 182 (272)
T ss_pred cC----CC--------------CHHHHHhhccCCCEEEEEeC
Confidence 43 11 47889999999999998754
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=121.94 Aligned_cols=111 Identities=19% Similarity=0.284 Sum_probs=89.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
-.|.+|||||||.|.++..++......|+|+|+++..+.+.+......+....+.+....++++|. .+.||.|+|.+|+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 368899999999999999999764568999999998877655544444444344444456777776 6889999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCC
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAP 221 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~ 221 (305)
.|..+|-. .+.+++..|++||-+++.+..+..
T Consensus 193 YHrr~Pl~-----------~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 193 YHRRSPLD-----------HLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred hccCCHHH-----------HHHHHHHhhCCCCEEEEEEeeecC
Confidence 99999965 699999999999999998765543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=119.00 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=80.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCCCe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~f 169 (305)
.+++.++.+|||+|||+|.++..+++.. ..+|+|+|+++.|++.+.+++... .++.++.+|+... +++ ++|
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~ 142 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKV 142 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccC
Confidence 4788899999999999999999999653 469999999999999887766542 4689999998751 223 569
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+|++. ++++.... .+++++.++|||||.+++.
T Consensus 143 D~i~~d-----~~~p~~~~--------~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 143 DVIYQD-----VAQPNQAE--------IAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CEEEEC-----CCChhHHH--------HHHHHHHHhcCCCcEEEEE
Confidence 999853 33332210 1489999999999999995
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=5e-14 Score=116.90 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=87.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc-----------CCCCCeEEEEcCCCCCCCC
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA-----------GVDKTCNFVKADFMKMPFP 165 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~ 165 (305)
.++++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+.+..... ....++++.++|+.+++..
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 4456789999999999999999986 899999999999999864321100 0124689999999987533
Q ss_pred -CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 166 -DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 166 -~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+.||+|+-..+++|++...... .++.+.++|+|||.+++...
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~---------~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRER---------YVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHH---------HHHHHHHHcCCCCeEEEEEE
Confidence 25799999999999998766543 69999999999997555443
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=118.90 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~ 175 (305)
+..+|||||||+|.++..+++ .++..|+|+|+++.+++.|++++...++. +++++++|+.+++ ++++++|.|++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 456999999999999999994 57889999999999999999998887775 8999999997643 456689999876
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+...... ...+....+++++.++|+|||.+.+.+
T Consensus 95 ~pdpw~k~~h~---~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHN---KRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCcc---ccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 54332221110 000111236999999999999998865
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-14 Score=120.09 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCCChHHHH-HH-h-hcCCeEEEEcCCHHHHHHHHHHHHh-cCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 99 KSGQKVLDVGCGIGGPLRE-IA-Q-FSSTSVTGLNNNEYQITRGKELNRF-AGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~-l~-~-~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.++.+|+|||||.|.++.. ++ . .++++++|+|+++.+++.|++.+.. .++.++++|.++|+.+.+-..+.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3678999999997754433 33 2 4678999999999999999999864 67878899999999875433478999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
. +++++......+ .++++.+.|+|||.+++-.
T Consensus 202 ~-ALi~~dk~~k~~---------vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVK---------VIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHH---------HHHHHHHhcCCCcEEEEec
Confidence 9 888884333322 6999999999999999853
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=114.78 Aligned_cols=109 Identities=22% Similarity=0.277 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++...++.. +++++.|+.+. .++++||+|+++-.+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-LPDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-CCTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-ccccceeEEEEccch
Confidence 6779999999999999999964 55589999999999999999999988765 99999999763 346899999998765
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.-.+....- ...+++++.+.|+|||.+++..
T Consensus 109 ~~~~~~~~~~------~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 109 HAGGDDGLDL------LRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp BTTSHCHHHH------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccchhh------HHHHHHHHHHhccCCCEEEEEe
Confidence 5444311000 0126889999999999987654
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-14 Score=124.47 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=90.7
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVD--KTCNFVKADFMKMPFP 165 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~ 165 (305)
.++++..++...+.+|||+|||+|.++..+++ .|..+|+++|+|+.+++.|+++++..+.. .+++++..|+... ++
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 34556666655567999999999999999985 57789999999999999999998776542 3689999988652 34
Q ss_pred CCCeeEEEecccccccC---ChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAP---DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++||+|+|+-.++... +... .+++..+.++|+|||.+++..
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia---------~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVA---------WEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHH---------HHHHHHHHHhcccCCEEEEEE
Confidence 56899999986665432 1111 126889999999999998864
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=112.09 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=86.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+. +++++.+|+...+ .++||+|+++.
T Consensus 16 ~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~ 90 (179)
T TIGR00537 16 RELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNP 90 (179)
T ss_pred HhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECC
Confidence 3345679999999999999999975 44999999999999999999887654 5888999987643 45899999998
Q ss_pred cccccCChhhh------hhcCCCC----CcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAAEI------EIGDGLP----DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~~~------~~~~~~~----~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+++.++.... ....+.. ...+++++.++|+|||.+++..
T Consensus 91 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 91 PYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 87766543110 0000000 1236889999999999998875
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=110.76 Aligned_cols=110 Identities=23% Similarity=0.240 Sum_probs=94.3
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
...+...+.+.++.+|||||||+|+.+.-+++. ..+|+.+|..+...+.|++++...|.. ++.++++|....--+..+
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCC
Confidence 455667889999999999999999999999986 459999999999999999999999986 599999999873224588
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
||.|+...+...+|.. +.+.|++||++++...
T Consensus 139 yD~I~Vtaaa~~vP~~-----------------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPEA-----------------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCHH-----------------HHHhcccCCEEEEEEc
Confidence 9999998887776665 6688999999999653
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=122.77 Aligned_cols=117 Identities=13% Similarity=0.137 Sum_probs=90.0
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDA 171 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 171 (305)
.+....+..+||||||+|.++..+| ..|+..++|+|+++.+++.+.+++...++. ++.++++|+..+ .++++++|.
T Consensus 117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 117 FISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred HhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeE
Confidence 3444567799999999999999999 457899999999999999999999888774 799999999753 477899999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|++.....+...... .+....+++++.++|+|||.+.+.+.
T Consensus 196 I~lnFPdPW~KkrHR-----Rlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 196 IFVHFPVPWDKKPHR-----RVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EEEeCCCCccccchh-----hccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 987543222111110 01112379999999999999998763
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=119.91 Aligned_cols=124 Identities=12% Similarity=0.115 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 042544 83 ESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM 160 (305)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~ 160 (305)
..++.+.+.+...+ +++.+|||+|||||..+..+++.. +.+|+++|+|+.||+.+++++.......++.++++|+.
T Consensus 48 ~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~ 125 (301)
T TIGR03438 48 AILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFT 125 (301)
T ss_pred HHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEccc
Confidence 33444444454444 366799999999999999998653 58999999999999999988765432235778899997
Q ss_pred C-CCCCCC----CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 161 K-MPFPDN----SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 161 ~-~~~~~~----~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+ ++++.. ...++++..++++++..+... +++++++.|+|||.+++...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~---------~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 126 QPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVA---------FLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred chhhhhcccccCCeEEEEecccccCCCHHHHHH---------HHHHHHHhcCCCCEEEEecc
Confidence 6 344332 233444556788887655533 79999999999999988643
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=113.61 Aligned_cols=108 Identities=23% Similarity=0.211 Sum_probs=87.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..+...+.+.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++++...++. +++++++|......+.++|
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCc
Confidence 44555677888999999999999999988765 468999999999999999999887764 5999999986532234789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++.....++ .+.+.+.|+|||.+++..
T Consensus 146 D~I~~~~~~~~~-----------------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 146 DRILVTAAAPEI-----------------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred CEEEEccCchhh-----------------hHHHHHhcCCCcEEEEEE
Confidence 999987655443 445678999999998865
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-14 Score=113.34 Aligned_cols=152 Identities=15% Similarity=0.110 Sum_probs=99.8
Q ss_pred EEEcCCHHHHHHHHHHHHhc--CCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHH
Q 042544 127 TGLNNNEYQITRGKELNRFA--GVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE 204 (305)
Q Consensus 127 ~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (305)
+|+|+|+.|++.|+++.... +...+++++++|+.++|+++++||+|++..+++++++... +++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~-----------~l~ei~r 69 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLR-----------AMKEMYR 69 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHH-----------HHHHHHH
Confidence 48999999999998776432 2234699999999999999999999999999999998866 6999999
Q ss_pred HHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHHHHHHHh----ccCCCchHHHHHHHHHHHH
Q 042544 205 ALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFV----GLAPKGSQRVQDFLEKAAE 280 (305)
Q Consensus 205 ~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~ 280 (305)
+|||||.+++.+..... ++.......+ +......+.+.+... ...++++ .- +.+.+++..+++++||
T Consensus 70 vLkpGG~l~i~d~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~y~yl~~si~~-f~~~~el~~ll~~aGF 140 (160)
T PLN02232 70 VLKPGSRVSILDFNKSN----QSVTTFMQGW--MIDNVVVPVATVYDL--AKEYEYLKYSING-YLTGEELETLALEAGF 140 (160)
T ss_pred HcCcCeEEEEEECCCCC----hHHHHHHHHH--HccchHhhhhHHhCC--hHHHHhHHHHHHH-CcCHHHHHHHHHHcCC
Confidence 99999999998754321 1100000000 001122333333211 2223322 22 3345899999999999
Q ss_pred HHhcCCcccccccceEEEE
Q 042544 281 GLAAGGRKEIFTPMYFFLA 299 (305)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~a 299 (305)
..+.. ..-.++...+.+|
T Consensus 141 ~~~~~-~~~~~g~~~~~~~ 158 (160)
T PLN02232 141 SSACH-YEISGGFMGNLVA 158 (160)
T ss_pred CcceE-EECcchHhHeeEe
Confidence 87763 3334444455554
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=107.57 Aligned_cols=111 Identities=22% Similarity=0.191 Sum_probs=93.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~ 167 (305)
...+..|.+.++.+++|||||||..+++++. .+.++|+++|-++++++..+++.++.+. ++++++.+++.+ ++- ..
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~-~~ 101 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPD-LP 101 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcC-CC
Confidence 4455678999999999999999999999993 4689999999999999999999999995 689999999976 332 12
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+||+|+.... ..++. .++.+...|+|||.+++...
T Consensus 102 ~~daiFIGGg-~~i~~--------------ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 102 SPDAIFIGGG-GNIEE--------------ILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCEEEECCC-CCHHH--------------HHHHHHHHcCcCCeEEEEee
Confidence 6999998877 44333 48999999999999999653
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-14 Score=113.63 Aligned_cols=117 Identities=20% Similarity=0.232 Sum_probs=83.1
Q ss_pred HHHHcCCCC--CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCC
Q 042544 92 LALQLGLKS--GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNS 168 (305)
Q Consensus 92 l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~ 168 (305)
.++++.++. ..-|||||||+|..+..+... +...+|+|||+.||+.|.++-- . -.++.+|+-. +||.+++
T Consensus 40 aLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~----e--gdlil~DMG~GlpfrpGt 112 (270)
T KOG1541|consen 40 ALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVEREL----E--GDLILCDMGEGLPFRPGT 112 (270)
T ss_pred HHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhh----h--cCeeeeecCCCCCCCCCc
Confidence 344555544 678999999999998888764 7899999999999999987321 1 3578888865 8999999
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
||.|+++.++.++-+.......+...-..++..++.+|++|+..++.
T Consensus 113 FDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 113 FDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred cceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 99999988766553321100000000123567788899999988775
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-13 Score=112.85 Aligned_cols=104 Identities=28% Similarity=0.391 Sum_probs=89.1
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~~l 178 (305)
.+.+|||+|||+|.++..++.. +.+++++|+++.+++.+++++...+.. ++.+...|+.+++.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4779999999999999988864 678999999999999999988765542 588999998876544 3789999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+.++.. +++++.++|+|||.+++..
T Consensus 123 ~~~~~~~~-----------~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EHVPDPQA-----------FIRACAQLLKPGGILFFST 149 (224)
T ss_pred HhCCCHHH-----------HHHHHHHhcCCCcEEEEEe
Confidence 99998876 5999999999999988865
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-13 Score=109.96 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=92.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHh-----------cCCCCCeEEEEcCCCCCCC
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF-----------AGVDKTCNFVKADFMKMPF 164 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-----------~~~~~~~~~~~~d~~~~~~ 164 (305)
+.+.++.+||+.|||.|..+..|++. |.+|+|+|+|+..++.+.+.... .....++++.++|+.+++.
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 34456789999999999999999987 88999999999999988663200 0012468999999999864
Q ss_pred C---CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 165 P---DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 165 ~---~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
. .+.||+|+-..+++++|.....+ ..+.+.++|+|||.+++......
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~---------Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTN---------YAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHH---------HHHHHHHHhCCCcEEEEEEEecC
Confidence 2 25799999999999998776644 79999999999999888765443
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-14 Score=105.55 Aligned_cols=112 Identities=23% Similarity=0.330 Sum_probs=86.2
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEecccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYAIEAT 178 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~~~l 178 (305)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++...+...+++++++|+.+.. +++++||+|+++-..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999976358999999999999999999999888778999999998854 778999999997765
Q ss_pred cccCC-hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPD-AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..... ..... . ....+++++.++|+|||.+++..
T Consensus 81 ~~~~~~~~~~~--~--~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALR--R--LYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GG--C--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhH--H--HHHHHHHHHHHHcCCCeEEEEEe
Confidence 43221 10000 0 00126899999999999988864
|
... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=120.06 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...++...+.+...+... ..+++||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecCH
Confidence 467899999999999998888654569999999999999999999888776667777776432 345789999987543
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+. .++.++.++|+|||.++++.
T Consensus 236 ~~l~--------------~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 236 EVIK--------------ELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred HHHH--------------HHHHHHHHHcCCCcEEEEEe
Confidence 3221 15889999999999999865
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-13 Score=119.73 Aligned_cols=117 Identities=24% Similarity=0.278 Sum_probs=92.5
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..+.....++++.+|||+|||||.++..++.. +.+++|+|+++.|+..+++++...+... +.+.++|+.++|+++++|
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCC
Confidence 44555667788999999999999999887764 7899999999999999999998888764 899999999988878899
Q ss_pred eEEEecccccc---cC-C-h-hhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCH---AP-D-A-AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~---~~-~-~-~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++.-.... .. + . ... ..+++++.++|+|||.+++..
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~--------~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLY--------ERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHH--------HHHHHHHHHHccCCcEEEEEE
Confidence 99998633211 00 0 0 000 126899999999999988865
|
This family is found exclusively in the Archaea. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-13 Score=108.77 Aligned_cols=119 Identities=21% Similarity=0.301 Sum_probs=85.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCC-eEEEEcCCCCCCCCCCCeeEEEe
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKT-CNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
+...++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.+++++...+...+ +.++++|+.+ ++++++||+|++
T Consensus 19 ~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~ 96 (188)
T PRK14968 19 AVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILF 96 (188)
T ss_pred hhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEE
Confidence 33467789999999999999999976 79999999999999999999887766433 8899999876 345568999998
Q ss_pred cccccccCChhh------hhhcCCCC----CcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAE------IEIGDGLP----DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~------~~~~~~~~----~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+........ .....+.. ...+++++.++|+|||.+++..
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 755433211100 00000000 0125889999999999888764
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-13 Score=108.86 Aligned_cols=111 Identities=23% Similarity=0.309 Sum_probs=96.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
.++...+++.+|++|||.|.|+|.++..|+.. +.++|+.+|+-+...+.|++++...++.+++++..+|+.+.-+++
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~- 162 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE- 162 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-
Confidence 34556789999999999999999999999953 458999999999999999999999999888999999998865554
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.||+|+. .+|+|-. .++.+.++|+|||.+++..+
T Consensus 163 ~vDav~L-----Dmp~PW~-----------~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 163 DVDAVFL-----DLPDPWN-----------VLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred ccCEEEE-----cCCChHH-----------HHHHHHHHhCCCcEEEEEcC
Confidence 8999975 6788755 69999999999999998753
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.7e-13 Score=113.47 Aligned_cols=105 Identities=19% Similarity=0.185 Sum_probs=78.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC---CCCCCCe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM---PFPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~f 169 (305)
.+.+.++.+|||+|||+|.++..++... ...|+++|+|+.|++...+.+.. ..++.+++.|+... ....++|
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---RPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh---cCCCEEEECCccChhhhhcccCCC
Confidence 3567899999999999999999999753 46899999999866544443322 14789999998641 2234579
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+|++... .++.... ++.++.+.|||||.++|.
T Consensus 204 DvV~~Dva---~pdq~~i----------l~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA---QPDQARI----------VALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC---CcchHHH----------HHHHHHHhccCCCEEEEE
Confidence 99988763 2443322 467899999999999994
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-13 Score=108.70 Aligned_cols=111 Identities=19% Similarity=0.149 Sum_probs=84.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~ 167 (305)
..+...+.+.++.+|||+|||+|.++..++. .++.+|+++|+|+.+++.+++++...+. .+++++.+|+.+ ++....
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAP 108 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCC
Confidence 3455667778889999999999999999984 3568999999999999999999988776 469999999864 222123
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|.++... ..+... +++++.+.|+|||.+++..
T Consensus 109 ~~d~v~~~~----~~~~~~-----------~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 109 APDRVCIEG----GRPIKE-----------ILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCCEEEEEC----CcCHHH-----------HHHHHHHhcCCCeEEEEEe
Confidence 357665421 111112 6999999999999999875
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-13 Score=117.93 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=87.9
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
.+...+......+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++..++. .+++..|+... .+++|
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--~~~~f 262 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--IKGRF 262 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--cCCCc
Confidence 3444444444568999999999999999854 5679999999999999999999887653 57788887652 25789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|+++..+|+........ ...+++++.+.|+|||.+++..
T Consensus 263 DlIvsNPPFH~g~~~~~~~------~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDA------AQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cEEEECCCccCCccccHHH------HHHHHHHHHHhcCcCCEEEEEE
Confidence 9999998887643321100 0126899999999999998865
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=111.94 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCC-----CCCCeEEEEcCCCChHHHHHH
Q 042544 45 ANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGL-----KSGQKVLDVGCGIGGPLREIA 119 (305)
Q Consensus 45 ~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~vLDiGcG~G~~~~~l~ 119 (305)
+.+++...+||+......+.++|+--+.+. -.++.-..+|..+... ....++||+|+|.|..+..+.
T Consensus 3 ~~~y~~a~~YW~~v~atvdGMLGG~~~is~--------~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lL 74 (218)
T PF05891_consen 3 KIWYEKAKEYWENVPATVDGMLGGFGHISR--------IDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLL 74 (218)
T ss_dssp CHHHHHHHHHHHTS-SSHHHHTTT-GGGHH--------HHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTC
T ss_pred ccHHHHHHHHHcCCCCCccccccCCCCCCh--------HHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHH
Confidence 345677888888887777777776543332 2233334455443222 245799999999999999887
Q ss_pred hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccH
Q 042544 120 QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRST 199 (305)
Q Consensus 120 ~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l 199 (305)
...-.+|..+|+.+..++.|++.+... ...-.++.+..++++..++++||+|++.+++.|+.|.+.++ ++
T Consensus 75 l~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~---------fL 144 (218)
T PF05891_consen 75 LPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVA---------FL 144 (218)
T ss_dssp CCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHH---------HH
T ss_pred HHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHH---------HH
Confidence 433679999999999999999865441 12346788888888765567999999999999999999876 79
Q ss_pred HHHHHHHHhCCceEEEeccCC
Q 042544 200 RKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 200 ~~~~~~L~~gG~~~i~~~~~~ 220 (305)
++++..|+|+|++++.+....
T Consensus 145 ~RCk~~L~~~G~IvvKEN~~~ 165 (218)
T PF05891_consen 145 KRCKQALKPNGVIVVKENVSS 165 (218)
T ss_dssp HHHHHHEEEEEEEEEEEEEES
T ss_pred HHHHHhCcCCcEEEEEecCCC
Confidence 999999999999999885443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=112.53 Aligned_cols=125 Identities=18% Similarity=0.137 Sum_probs=93.9
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNS 168 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 168 (305)
|..+..+....+|||+|||+|..++.++.+ +.++++|||+++.+.+.|+++++..++.++++++++|+..+. ....+
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence 334566667889999999999999999965 569999999999999999999999999999999999998853 33457
Q ss_pred eeEEEecccccccCCh----hhhhh---cCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDA----AEIEI---GDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~----~~~~~---~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|+|+--..-.... ....+ .-......+++.+.++|||||.+.+..
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 9999997544332222 00000 000111236788889999999998864
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=112.82 Aligned_cols=113 Identities=23% Similarity=0.224 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 042544 87 RHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF 164 (305)
Q Consensus 87 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 164 (305)
.....++..+.+.++.+|||||||+|+.+..++... ..+|+++|+.+..++.|++++...+.. ++.++++|......
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc
Confidence 344566778889999999999999999999999653 357999999999999999999988775 79999999876333
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+..+||.|++......+| ..+.+.|++||++++...
T Consensus 138 ~~apfD~I~v~~a~~~ip-----------------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIP-----------------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBSS-------------------HHHHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccchHH-----------------HHHHHhcCCCcEEEEEEc
Confidence 457899999988776544 336677899999999653
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.3e-13 Score=110.30 Aligned_cols=119 Identities=22% Similarity=0.237 Sum_probs=83.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
+.+.++.+|||+|||+|.++..++.....+|+++|+|+.+++.+++++...+. ++.++.+|+.+. +++++||+|++.
T Consensus 32 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~n 108 (223)
T PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSN 108 (223)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEEC
Confidence 45667889999999999999999875335999999999999999998877665 478899998763 456789999987
Q ss_pred ccccccCChh-----h-hhhcCCCC----CcccHHHHHHHHHhCCceEEEec
Q 042544 176 EATCHAPDAA-----E-IEIGDGLP----DIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l~~~~~~~-----~-~~~~~~~~----~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
-....-.... . .....+.. -..+++++.++|+|||.+++...
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 4322111100 0 00000000 01257788999999999988653
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-13 Score=116.77 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=87.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
..+...+.++++.+|||||||+|.++..+++..+ ..|+++|+++.+++.|++++...+. +++.++++|+...+...+
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccC
Confidence 3455567788889999999999999999996533 4799999999999999999988876 479999999877554456
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|++...+.++ ...+.+.|+|||.+++..
T Consensus 149 ~fD~Ii~~~g~~~i-----------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVGVDEV-----------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CccEEEECCchHHh-----------------HHHHHHhcCCCCEEEEEe
Confidence 79999987554432 334678899999988854
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=113.14 Aligned_cols=116 Identities=16% Similarity=0.263 Sum_probs=84.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.++.+|||+|||+|.++..++. .++.+|+|+|+|+.+++.|++++...++..+++++++|+.+ ++++++||+|+++--
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 3457999999999999999995 45789999999999999999999988877789999999865 234568999998621
Q ss_pred ------ccccCC-----hhhhhhcCC---CC-CcccHHHHHHHHHhCCceEEEe
Q 042544 178 ------TCHAPD-----AAEIEIGDG---LP-DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 ------l~~~~~-----~~~~~~~~~---~~-~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.+++. +.. .+..+ +. -..++.++.+.|+|||.+++..
T Consensus 199 y~~~~~~~~l~~~~~~ep~~-al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPEL-ALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCccchhhCCHhhhcCHHH-HhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 111111 100 00000 00 0125788889999999988864
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.4e-13 Score=108.90 Aligned_cols=95 Identities=22% Similarity=0.352 Sum_probs=75.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-CCCCCCeeEEEecc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-PFPDNSFDAVYAIE 176 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~v~~~~ 176 (305)
+++.+|||+|||+|.++..+++..+..++|+|+|+.+++.++++ +++++++|+.+ + ++++++||+|++..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 46789999999999999998865567899999999999887641 46788999875 4 36778999999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++|++++.. +++++.+. +|..++.
T Consensus 84 ~l~~~~d~~~-----------~l~e~~r~---~~~~ii~ 108 (194)
T TIGR02081 84 TLQATRNPEE-----------ILDEMLRV---GRHAIVS 108 (194)
T ss_pred HhHcCcCHHH-----------HHHHHHHh---CCeEEEE
Confidence 9999998765 46666554 5555554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.4e-13 Score=114.52 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=83.4
Q ss_pred CCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc---
Q 042544 101 GQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE--- 176 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--- 176 (305)
..+|||+|||+|..+..++. .++.+|+|+|+|+.+++.|++++...+...+++++++|+.+ ++++++||+|+++-
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 36999999999999999995 45689999999999999999999888876679999999876 34445899999852
Q ss_pred ----------cccccCChhhhhhcCCCC-CcccHHHHHHHHHhCCceEEEe
Q 042544 177 ----------ATCHAPDAAEIEIGDGLP-DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ----------~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+..|-|......-..|+. -..++.++.+.|+|||.+++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 122222111100000000 0125778889999999988865
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-13 Score=114.11 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|++++...++...+.+..+| .+||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~ 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANIL 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCc
Confidence 3578899999999999998877653446999999999999999998877664344433322 27999998643
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+ ...+.++.++|+|||.+++..
T Consensus 189 ~~~~--------------~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 189 ANPL--------------LELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred HHHH--------------HHHHHHHHHhcCCCcEEEEEE
Confidence 2211 115889999999999999864
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-12 Score=114.75 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=82.8
Q ss_pred CeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc--
Q 042544 102 QKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT-- 178 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l-- 178 (305)
.+|||+|||+|.++..++. .++.+|+++|+|+.+++.|++++...++..+++++++|+.+ ++++++||+|+++-..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 6899999999999999985 46789999999999999999999988876679999999865 2345689999986211
Q ss_pred -----------cccCChhhhhhcCCCC-CcccHHHHHHHHHhCCceEEEe
Q 042544 179 -----------CHAPDAAEIEIGDGLP-DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 -----------~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.|-|......-..|+. -..+++++.+.|+|||.+++..
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111110000000000 0125788889999999998854
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=117.96 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=93.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC--CC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF--PD 166 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~ 166 (305)
..+...+.+.++.+|||+|||+|..+..+++. +.++|+++|+++.+++.++++++..|+...+.+..+|....+. ++
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 34455678888999999999999999999964 3589999999999999999999988875334446677665443 46
Q ss_pred CCeeEEEe------cccccccCChhhhhhcCCC-----CCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 167 NSFDAVYA------IEATCHAPDAAEIEIGDGL-----PDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 167 ~~fD~v~~------~~~l~~~~~~~~~~~~~~~-----~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
++||.|++ .+++.+.|+.....-...+ .....+.++.++|||||.+++++..+.
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 78999985 2356665553110000000 002268899999999999999886543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-12 Score=105.91 Aligned_cols=107 Identities=18% Similarity=0.109 Sum_probs=76.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------CCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------FPDN 167 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~ 167 (305)
++++.+|||||||||.++..+++. +.++|+|+|+++ |. .. .+++++++|+.+.+ +.++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~-~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PI-VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CC-CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 467889999999999999999865 246999999988 21 12 35899999998853 5678
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|++..+.+...++.............+++++.++|+|||.+++..
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 8999999776655443210000000000126899999999999999965
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-12 Score=108.74 Aligned_cols=112 Identities=25% Similarity=0.283 Sum_probs=92.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
..+.......+..+|||||+|+|.++..++ ++|+.+++.+|+ |..++.+++ .++++++.+|+. -++|.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~-- 158 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPV-- 158 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSS--
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcc--
Confidence 344455667777899999999999999999 578999999999 888888877 468999999998 46665
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC--CceEEEeccCCC
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA--GFEVIWEKDLAP 221 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g--G~~~i~~~~~~~ 221 (305)
+|+++..+++|++++.+... .|+++++.|+|| |.++|.+..+..
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~---------iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVK---------ILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHH---------HHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred ccceeeehhhhhcchHHHHH---------HHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 99999999999999988765 699999999999 999999876553
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-12 Score=107.06 Aligned_cols=115 Identities=20% Similarity=0.325 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.+.+|||+|||+|.++..++.. +..+++|+|+|+.+++.+++++...+.. +++++++|+.+ ++++++||+|++.-..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PLPGGKFDLIVSNPPY 164 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cCcCCceeEEEECCCC
Confidence 4569999999999999999954 5679999999999999999998887764 69999999976 4567889999985432
Q ss_pred cccCChh------h-----hhhcCCCCC----cccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAA------E-----IEIGDGLPD----IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~------~-----~~~~~~~~~----~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+.. . .....+... ..+++++.++|+|||.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2111100 0 000000000 125788999999999988853
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-12 Score=116.32 Aligned_cols=128 Identities=19% Similarity=0.199 Sum_probs=95.0
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----C
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----F 164 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~ 164 (305)
.+...+.+.++.+|||+|||+|..+..+++. ..++|+++|+++.+++.+++++...|+. +++++++|+..++ .
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~ 321 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQ 321 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccccccc
Confidence 3445677888999999999999999999864 2469999999999999999999998875 5999999998765 3
Q ss_pred CCCCeeEEEec------ccccccCChhhhhhcCC---CC--CcccHHHHHHHHHhCCceEEEeccC
Q 042544 165 PDNSFDAVYAI------EATCHAPDAAEIEIGDG---LP--DIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 165 ~~~~fD~v~~~------~~l~~~~~~~~~~~~~~---~~--~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
..++||.|++. +++.+-|+.....-... +. ....+.++.+.|||||.++..+..+
T Consensus 322 ~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45789999962 34555554311000000 00 0236899999999999999887543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=115.66 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=93.1
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNS 168 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~ 168 (305)
+...+.+.++.+|||+|||+|..+..+++. .+++|+++|+|+.+++.+++++.+.|+. +++++++|+..++ +.+++
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~ 307 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDT 307 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhcc
Confidence 344567888999999999999999999864 3579999999999999999999998875 5899999998765 44678
Q ss_pred eeEEEec------ccccccCChhhhhh---cCCC--CCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 169 FDAVYAI------EATCHAPDAAEIEI---GDGL--PDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 169 fD~v~~~------~~l~~~~~~~~~~~---~~~~--~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
||.|++. +++..-|+.....- ...+ .....+.++.+.|+|||.++.++..+.
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9999962 22322222100000 0000 002258899999999999999886543
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-12 Score=108.24 Aligned_cols=124 Identities=16% Similarity=0.112 Sum_probs=90.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
.+.+.++.+|||+|||+|..+..+++.. .+.|+++|+++.+++.++++++..+.. ++.+++.|+..++...+.||+|
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEE
Confidence 5677889999999999999999998642 469999999999999999999998874 6899999987765445679999
Q ss_pred Eec------ccccccCChhhhhhcCCC-----CCcccHHHHHHHHHhCCceEEEeccC
Q 042544 173 YAI------EATCHAPDAAEIEIGDGL-----PDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 173 ~~~------~~l~~~~~~~~~~~~~~~-----~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
++. +++.+-|+.........+ .....++++.+.|+|||.++.++..+
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 862 233333322100000000 00126889999999999999887543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-12 Score=117.01 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=90.6
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
...+.+.++.+|||+|||+|..+..+++. ..++|+++|+|+.+++.+++++...|+. +++++++|+..++ ++++||
T Consensus 243 ~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 243 CLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCC
Confidence 34567778899999999999999988853 2469999999999999999999988874 6999999998765 457899
Q ss_pred EEEec------ccccccCCh------hhhh-hcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 171 AVYAI------EATCHAPDA------AEIE-IGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 171 ~v~~~------~~l~~~~~~------~~~~-~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
+|++- .++..-|+. ..+. +.. .....+.++.+.|+|||.+++.+..+
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~--~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVG--LQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHH--HHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99952 122222221 1000 000 00126899999999999999987544
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-12 Score=109.29 Aligned_cols=103 Identities=23% Similarity=0.346 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||+|||+|.+++..++....+|+|+|++|..++.|++++..+++...++....+....+ ..++||+|+++-.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANIL- 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANIL- 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehhh-
Confidence 37899999999999999999987556799999999999999999998887643334444443332 2368999998742
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.++-. .....+.+.|+|||.++++-
T Consensus 239 ---A~vl~----------~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 239 ---AEVLV----------ELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred ---HHHHH----------HHHHHHHHHcCCCceEEEEe
Confidence 22211 15888999999999999874
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.9e-12 Score=105.39 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=92.3
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
.++|++.++...+.+|||+|||.|..+..+++ .|..+++-+|+|...++.|++++..++... ..+...|... +..+
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~-~v~~- 223 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYE-PVEG- 223 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccc-cccc-
Confidence 35566677777777999999999999999995 567899999999999999999999887753 3677777765 4444
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|+|+--+|.-.+....- -.+.+.+..+.|++||.+.|..
T Consensus 224 kfd~IisNPPfh~G~~v~~~~------~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSL------AQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred cccEEEeCCCccCCcchhHHH------HHHHHHHHHHhhccCCEEEEEE
Confidence 899999988777443322100 0126889999999999998875
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-12 Score=110.95 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=75.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
..++.+|||+|||||.+++..+.....+|+|+|++|..++.|++++..+++..++.+. ...+ ...++||+|+++-.
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~--~~~~~~dlvvANI~ 234 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED--LVEGKFDLVVANIL 234 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC--TCCS-EEEEEEES-
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc--cccccCCEEEECCC
Confidence 3567899999999999999998864568999999999999999999999987766542 2222 23588999998654
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..-+- .....+.+.|+|||+++++-
T Consensus 235 ~~vL~--------------~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 235 ADVLL--------------ELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp HHHHH--------------HHHHHCHHHEEEEEEEEEEE
T ss_pred HHHHH--------------HHHHHHHHhhCCCCEEEEcc
Confidence 33211 14777889999999999975
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=106.36 Aligned_cols=120 Identities=20% Similarity=0.315 Sum_probs=83.1
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
.....++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.+++++. .....++.++++|+.. ++++++||+|+
T Consensus 103 ~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~-~~~~~~fD~Iv 180 (275)
T PRK09328 103 ALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFE-PLPGGRFDLIV 180 (275)
T ss_pred hccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccC-cCCCCceeEEE
Confidence 344557789999999999999999954 56899999999999999999887 3334579999999865 23357899999
Q ss_pred ecccccc------cCChhh-----hhhcCCCCC----cccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCH------APDAAE-----IEIGDGLPD----IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~------~~~~~~-----~~~~~~~~~----~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.-.... +..... ..+..+... ..+++++.++|+|||.+++..
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 8532211 110000 000000000 125778889999999998843
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-12 Score=108.59 Aligned_cols=110 Identities=20% Similarity=0.164 Sum_probs=82.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCCCCCeeEEEec
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFPDNSFDAVYAI 175 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~ 175 (305)
.+++.+|||||||+|.++..+++ .++.+++++|+++.+++.|++.+...+..++++++++|+.++ +-..++||+|++.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 34567999999999999999984 467899999999999999999876544446899999998652 2223679999974
Q ss_pred ccc-cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 176 EAT-CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 176 ~~l-~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..- ...+.. +....+++++.+.|+|||.+++.
T Consensus 144 ~~~~~~~~~~--------l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GFDGEGIIDA--------LCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCCccc--------cCcHHHHHHHHHhcCCCcEEEEE
Confidence 211 111111 11123799999999999999885
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-12 Score=116.06 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=89.8
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNS 168 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 168 (305)
+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...+.. ++++++|+..++ +++++
T Consensus 236 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 236 AATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCC
Confidence 3446778889999999999999999999653 479999999999999999999888764 789999998753 34578
Q ss_pred eeEEEecc------cccccCChhhhhhcCCCC-----CcccHHHHHHHHHhCCceEEEeccC
Q 042544 169 FDAVYAIE------ATCHAPDAAEIEIGDGLP-----DIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 169 fD~v~~~~------~l~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
||.|++.- ++.+-|+.........+. ....+..+.++|+|||.+++.+..+
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99999422 222222210000000000 0126889999999999999987533
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-12 Score=105.51 Aligned_cols=104 Identities=18% Similarity=0.259 Sum_probs=77.2
Q ss_pred CCCC-eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQ-KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.++. .++|+|||+|..++.++++ ..+|+|+|+|+.||+.|++................++.++--.+++.|+|+|..+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3443 8999999999888888876 5799999999999999887543322222233444444444334899999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCC-ceEEE
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAG-FEVIW 215 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG-~~~i~ 215 (305)
+|++..+. +.+++.++||+.| .+.+.
T Consensus 110 ~HWFdle~------------fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 110 VHWFDLER------------FYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred HHhhchHH------------HHHHHHHHcCCCCCEEEEE
Confidence 99988765 5899999999877 55553
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-12 Score=111.03 Aligned_cols=112 Identities=25% Similarity=0.326 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcC---------CCCCeEEEEcCCCCC----CCCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAG---------VDKTCNFVKADFMKM----PFPD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~~~~~~d~~~~----~~~~ 166 (305)
++.+|||+|||-|..+.-+....-..++|+|||...++.|+++..... ..-...++.+|.... .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 778999999999998888875546899999999999999999983211 112457788888642 1333
Q ss_pred --CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 167 --NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 167 --~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
..||+|-|.+++||.-..+... ..++.++...|+|||+++....+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~a-------r~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKA-------RQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHH-------HHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHH-------HHHHHHHHHhcCCCCEEEEEecC
Confidence 5899999999999986554321 22799999999999999987654
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-12 Score=104.36 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=104.6
Q ss_pred eEEEEcCCCChHHHHHHh-hcC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC----CCCCCCCeeEEEec
Q 042544 103 KVLDVGCGIGGPLREIAQ-FSS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK----MPFPDNSFDAVYAI 175 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~-~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~v~~~ 175 (305)
+||+||||.|.....+.+ .++ ..|+++|.||.+++..++..... ..++...+.|+.. -|.+.+++|.|+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~--e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD--ESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc--hhhhcccceeccchhccCCCCcCccceEEEE
Confidence 899999999999999874 333 79999999999999988865443 2355556666653 34667999999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHH
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMV 255 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 255 (305)
+++..++...... +++++.++|||||.+++-+-..-+.....+. . ++.+..+..
T Consensus 152 FvLSAi~pek~~~---------a~~nl~~llKPGG~llfrDYg~~DlaqlRF~--~---------------~~~i~~nfY 205 (264)
T KOG2361|consen 152 FVLSAIHPEKMQS---------VIKNLRTLLKPGGSLLFRDYGRYDLAQLRFK--K---------------GQCISENFY 205 (264)
T ss_pred EEEeccChHHHHH---------HHHHHHHHhCCCcEEEEeecccchHHHHhcc--C---------------CceeecceE
Confidence 9999997765533 7999999999999999965221110000000 0 000000000
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHhcC
Q 042544 256 KALEFVGLAPKGSQRVQDFLEKAAEGLAAG 285 (305)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (305)
-.-+.....+++.+++.+++..+|+..+..
T Consensus 206 VRgDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 206 VRGDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred EccCCceeeeccHHHHHHHHHhcccchhcc
Confidence 000112235567789999999999987663
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.8e-12 Score=104.89 Aligned_cols=161 Identities=25% Similarity=0.253 Sum_probs=110.3
Q ss_pred HHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh
Q 042544 41 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120 (305)
Q Consensus 41 ~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 120 (305)
.+......+.++.||+...+.=. +....+|.+..+.+..-++ ..|+. .-.+++..+||+|||-|..++.+-.
T Consensus 66 ~~~~~~~~~~Va~HYN~~~e~g~----e~Rq~S~Ii~lRnfNNwIK---s~LI~-~y~~~~~~~~~LgCGKGGDLlKw~k 137 (389)
T KOG1975|consen 66 MEANESKSSEVAEHYNERTEVGR----EKRQRSPIIFLRNFNNWIK---SVLIN-LYTKRGDDVLDLGCGKGGDLLKWDK 137 (389)
T ss_pred hhhccchhHHHHHHHHHHHHHhH----hhhccCceeehhhhhHHHH---HHHHH-HHhccccccceeccCCcccHhHhhh
Confidence 34556668899999998654321 1122344443333333222 22222 2345788999999999999888875
Q ss_pred hcCCeEEEEcCCHHHHHHHHHHHHhcCCCC-----CeEEEEcCCCC------CCCCCCCeeEEEecccccccCCh-hhhh
Q 042544 121 FSSTSVTGLNNNEYQITRGKELNRFAGVDK-----TCNFVKADFMK------MPFPDNSFDAVYAIEATCHAPDA-AEIE 188 (305)
Q Consensus 121 ~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----~~~~~~~d~~~------~~~~~~~fD~v~~~~~l~~~~~~-~~~~ 188 (305)
..-..++|+||+...++.|+++.+...... .+.|+.+|... +++++.+||+|-|.+++|+--.. +...
T Consensus 138 AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar 217 (389)
T KOG1975|consen 138 AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESAR 217 (389)
T ss_pred hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHH
Confidence 445799999999999999999876442211 36889998864 34556669999999999986443 3322
Q ss_pred hcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 189 IGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 189 ~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+++++.++|+|||+++-+.+
T Consensus 218 --------~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 218 --------IALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred --------HHHHHHHhhcCCCcEEEEecC
Confidence 269999999999999987654
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.3e-12 Score=104.97 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=84.7
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-----CCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-----FPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~ 166 (305)
++...++.+|||+|||+|..+..++.. .+++|+++|+++.+++.|+++++..++.++++++.+|+.+. + .+.
T Consensus 63 l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 63 LVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred HHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 344456789999999999999888853 35799999999999999999999999988899999999762 2 124
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|++-.. .+... ..+..+.+.|+|||.+++..
T Consensus 143 ~~fD~VfiDa~-----k~~y~---------~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 143 PEFDFAFVDAD-----KPNYV---------HFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCCEEEECCC-----HHHHH---------HHHHHHHHhcCCCeEEEEEc
Confidence 68999987422 11111 15888999999999877754
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-11 Score=108.89 Aligned_cols=114 Identities=14% Similarity=0.240 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIE 176 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~ 176 (305)
+++.+|||+|||+|..+..++. .++.+|+|+|+|+.|++.|++++...+. +++++++|+.+..++ .++||+|+++-
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECC
Confidence 4567999999999999999884 4678999999999999999999887654 699999998764332 45799999965
Q ss_pred cccccCChh------------hhhhcCCCCCc----ccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAA------------EIEIGDGLPDI----RSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~------------~~~~~~~~~~~----~~l~~~~~~L~~gG~~~i~~ 216 (305)
. +++..+ ...+..+-.-+ ..++.+.+.|+|||.+++..
T Consensus 328 P--YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 328 P--YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred C--CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3 222111 00111111111 24666778999999987754
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=102.60 Aligned_cols=114 Identities=22% Similarity=0.372 Sum_probs=88.3
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC--
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-- 165 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-- 165 (305)
.++...+++.||.+|||.|.|+|.++..|++. +.++|+.+|+.+...+.|+++++..++..++.+.+.|+..-.|+
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 45667889999999999999999999999964 56899999999999999999999999988999999999653332
Q ss_pred -CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHH-HhCCceEEEeccC
Q 042544 166 -DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEAL-KQAGFEVIWEKDL 219 (305)
Q Consensus 166 -~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~~~i~~~~~ 219 (305)
+..+|+|+. .+|+|-. .+..+.++| ++||++++..+++
T Consensus 110 ~~~~~DavfL-----Dlp~Pw~-----------~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPWE-----------AIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp -TTSEEEEEE-----ESSSGGG-----------GHHHHHHHE-EEEEEEEEEESSH
T ss_pred ccCcccEEEE-----eCCCHHH-----------HHHHHHHHHhcCCceEEEECCCH
Confidence 367999975 6777754 588888888 7888887765443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=99.26 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=70.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
.+.+.+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++.. ..+++++++|+.++++++.+||
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCC
Confidence 3444567778889999999999999999976 78999999999999999988753 2479999999999888777799
Q ss_pred EEEecccc
Q 042544 171 AVYAIEAT 178 (305)
Q Consensus 171 ~v~~~~~l 178 (305)
.|+++-..
T Consensus 80 ~vi~n~Py 87 (169)
T smart00650 80 KVVGNLPY 87 (169)
T ss_pred EEEECCCc
Confidence 99876433
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-12 Score=117.42 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
++.+|||+|||+|.++..++. .++.+|+++|+|+.+++.|++++...++.+++.++++|+.. ++++++||+|+++-..
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 346899999999999999884 46789999999999999999999888877789999999865 2345689999985321
Q ss_pred c--------------ccCChhhhhhcCCCCC-cccHHHHHHHHHhCCceEEEe
Q 042544 179 C--------------HAPDAAEIEIGDGLPD-IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~--------------~~~~~~~~~~~~~~~~-~~~l~~~~~~L~~gG~~~i~~ 216 (305)
. |-|......-..|+.. ..+++++.+.|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 1111110000001111 124677888999999988753
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=97.76 Aligned_cols=172 Identities=17% Similarity=0.210 Sum_probs=125.0
Q ss_pred CCCCeEEEEcCCCChHHHHHH-hhcC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-C--CCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIA-QFSS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-F--PDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~-~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~--~~~~fD~v 172 (305)
...-+||||.||+|...+... ..+. .+|.-.|.|+..++..++.++..|+.+-++|.++|+.+.. + -+...+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 355799999999999998877 4443 6899999999999999999999999877799999998731 1 13457999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHH
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTR 252 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 252 (305)
+.++.++.++|.+.+. ..+..+.+++.|||+++... .||... +..+.+.+..
T Consensus 214 iVsGL~ElF~Dn~lv~--------~sl~gl~~al~pgG~lIyTg--------QPwHPQ------------le~IAr~Lts 265 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVR--------RSLAGLARALEPGGYLIYTG--------QPWHPQ------------LEMIARVLTS 265 (311)
T ss_pred EEecchhhCCcHHHHH--------HHHHHHHHHhCCCcEEEEcC--------CCCCcc------------hHHHHHHHhc
Confidence 9999999999987653 26889999999999999853 345222 2222222211
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 253 NMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
+.. -..|.+.-.+..++-.+.+.+||+-+.. ...-++.+.+.+|+|
T Consensus 266 Hr~--g~~WvMRrRsq~EmD~Lv~~aGF~K~~q-~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 266 HRD--GKAWVMRRRSQAEMDQLVEAAGFEKIDQ-RIDEWGIFTVSLARR 311 (311)
T ss_pred ccC--CCceEEEecCHHHHHHHHHHcCCchhhh-eeccCCceEEEeecC
Confidence 100 0122333345578999999999987763 455666677777775
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=113.76 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=91.0
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPD 166 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~ 166 (305)
.+...+.+.++.+|||+|||+|..+..+++. +.++|+++|+++.+++.+++++...|+. +++++++|+..++ ++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~- 318 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA- 318 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc-
Confidence 4444667788899999999999999999964 3679999999999999999999988875 4999999998753 33
Q ss_pred CCeeEEEecc------cccccCChhhhhhcCCCC-----CcccHHHHHHHHHhCCceEEEecc
Q 042544 167 NSFDAVYAIE------ATCHAPDAAEIEIGDGLP-----DIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 167 ~~fD~v~~~~------~l~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
++||+|++.- ++.+.|+.........+. ....+..+.++|+|||.++..+..
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 6899999642 222223221000000000 012588899999999999987643
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=88.74 Aligned_cols=101 Identities=25% Similarity=0.362 Sum_probs=80.9
Q ss_pred eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-CCCCeeEEEeccccccc
Q 042544 103 KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF-PDNSFDAVYAIEATCHA 181 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~v~~~~~l~~~ 181 (305)
+|||+|||+|..+..++.....+++++|+++.++..+++..... ...++.++..|+.+... ..++||+|++..++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 58999999999999998745789999999999999888543322 33578999999988653 45789999999998874
Q ss_pred -CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 182 -PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 182 -~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..... .++.+.+.|+|+|.+++.
T Consensus 80 ~~~~~~-----------~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLAR-----------FLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHH-----------HHHHHHHHcCCCCEEEEE
Confidence 33333 689999999999998875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-11 Score=105.69 Aligned_cols=110 Identities=24% Similarity=0.284 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcC----CCCCeEEEEcCCCCC-CCCCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAG----VDKTCNFVKADFMKM-PFPDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~d~~~~-~~~~~~fD~v 172 (305)
+.+.+||+||||+|..+..+++.+ ..+|+++|+++.+++.|++.+...+ -.++++++.+|+..+ ...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 356799999999999999998763 4699999999999999999876432 146899999998763 3346789999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
++...-.+.+..... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~-------t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLF-------TKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhh-------HHHHHHHHHHhcCCCcEEEEe
Confidence 985432222221110 022688999999999998875
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-11 Score=99.19 Aligned_cols=105 Identities=21% Similarity=0.243 Sum_probs=72.8
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------C
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------F 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~ 164 (305)
...+.++.+|||+|||+|.++..++.. ...+|+++|+|+.+ .. .+++++++|+.+.+ +
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHh
Confidence 345678899999999999999998854 34689999999864 11 35788999987632 4
Q ss_pred CCCCeeEEEecccccc-----cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCH-----APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~-----~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++++||+|++....+. +........ ...++..+.++|+|||.+++..
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDL-----VELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHH-----HHHHHHHHHHHccCCCEEEEEE
Confidence 5678999998643211 111000000 0126899999999999999853
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-11 Score=96.70 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=83.4
Q ss_pred eEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCC------CCCeeEEE
Q 042544 103 KVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFP------DNSFDAVY 173 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~------~~~fD~v~ 173 (305)
+|||||||||..+.+++ ..|..+..-.|+++..+...++.+...+...-..-+..|+... +.. .++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 59999999999999999 4577888899999999888888777766643334456676653 322 45899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.+++|-.+...... .++.+.++|++||.+++.-
T Consensus 108 ~~N~lHI~p~~~~~~---------lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 108 CINMLHISPWSAVEG---------LFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ehhHHHhcCHHHHHH---------HHHHHHHhCCCCCEEEEeC
Confidence 999999888765543 6899999999999999864
|
The function of this family is unknown. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=101.66 Aligned_cols=111 Identities=26% Similarity=0.403 Sum_probs=85.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHh-c------C----CCCCeEEEEcCCCCCCC
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF-A------G----VDKTCNFVKADFMKMPF 164 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~------~----~~~~~~~~~~d~~~~~~ 164 (305)
+...++.+||..|||.|.....|++. +.+|+|+|+|+..++.+.+.... . + ...++++.++|+..++.
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 45677889999999999999999987 88999999999999998543221 0 0 12367899999998764
Q ss_pred CC-CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PD-NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~-~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.. ++||+|+=..+++-+|.....+ ..+.+.++|+|||.+++..
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~---------Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRER---------YAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHH---------HHHHHHHCEEEEEEEEEEE
T ss_pred hhcCCceEEEEecccccCCHHHHHH---------HHHHHHHHhCCCCcEEEEE
Confidence 33 5799999999999998776543 7999999999999944433
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-11 Score=109.89 Aligned_cols=92 Identities=25% Similarity=0.364 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 82 RESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
....+...+.+...+.+.++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|++++...+.. +++++++|+.+
T Consensus 279 ~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~ 356 (443)
T PRK13168 279 AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHH
Confidence 3334555566666777778899999999999999999976 589999999999999999999887764 69999999865
Q ss_pred C----CCCCCCeeEEEec
Q 042544 162 M----PFPDNSFDAVYAI 175 (305)
Q Consensus 162 ~----~~~~~~fD~v~~~ 175 (305)
. ++.+++||+|++.
T Consensus 357 ~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLD 374 (443)
T ss_pred hhhhhhhhcCCCCEEEEC
Confidence 2 2445689999864
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-11 Score=98.14 Aligned_cols=110 Identities=21% Similarity=0.321 Sum_probs=82.8
Q ss_pred CCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC--CCCCCeeEEEecc
Q 042544 101 GQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP--FPDNSFDAVYAIE 176 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~--~~~~~fD~v~~~~ 176 (305)
...+||||||.|.++..+| .+|+..++|+|++...+..+.+++...++. |+.++++|+.. ++ ++++++|.|+..
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~- 95 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYIN- 95 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEE-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEe-
Confidence 3489999999999999999 568999999999999999999999888874 89999999987 22 457899999864
Q ss_pred cccccCChh--hhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAA--EIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|||- ......-+....++..+.++|+|||.+.+.+
T Consensus 96 ----FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 96 ----FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 44441 1111122333457999999999999998876
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.2e-11 Score=97.08 Aligned_cols=113 Identities=22% Similarity=0.297 Sum_probs=89.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hc-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEE-cCCCC-CC-C
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FS-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVK-ADFMK-MP-F 164 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~-~~-~ 164 (305)
.++..++...+..+|||||++.|..+..++. .+ +++++.+|+++++.+.|+++++..|+.+++.++. +|..+ +. .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 4444455566788999999999999999994 34 6899999999999999999999999988899998 47765 22 3
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..++||+|+.-..=... ..+++.+.++|+|||.+++..
T Consensus 129 ~~~~fDliFIDadK~~y--------------p~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 129 LDGSFDLVFIDADKADY--------------PEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred cCCCccEEEEeCChhhC--------------HHHHHHHHHHhCCCcEEEEee
Confidence 46899999864221111 226999999999999888854
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=102.65 Aligned_cols=109 Identities=20% Similarity=0.299 Sum_probs=79.3
Q ss_pred eEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccccc
Q 042544 103 KVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 181 (305)
+|||+|||||..++.++. .+.++|+|+|+|+.+++.|++++...++ .++.+++.|+.. +.. ++||+|+++-- |+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~-~~~-~~fDlIVsNPP--Yi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE-PLR-GKFDLIVSNPP--YI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc-ccC-CceeEEEeCCC--CC
Confidence 799999999999999994 4567999999999999999999999987 567777777765 233 48999998642 22
Q ss_pred CCh-------------hhhhhcC--CCCC-cccHHHHHHHHHhCCceEEEe
Q 042544 182 PDA-------------AEIEIGD--GLPD-IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 182 ~~~-------------~~~~~~~--~~~~-~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.. ...-.+. |+.. .+++.++.+.|+|||++++..
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 211 1000111 1111 135778889999999888864
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=97.34 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.+..+|||+|||+|.++..++.. ++.+|+|+|+|+.|++.++++. .+++++++|+..+.. +++||+|+++-.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-~~kFDlIIsNPP 135 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-NEKFDVVISNPP 135 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-cCCCcEEEEcCC
Confidence 34569999999999999988754 3579999999999999998753 258899999988653 468999999988
Q ss_pred ccccCChhhhh---hcCC------CCCcccHHHHHHHHHhCCceEEE
Q 042544 178 TCHAPDAAEIE---IGDG------LPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 178 l~~~~~~~~~~---~~~~------~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+.+.+..+... ...| ++-...+......|+|+|.+.+.
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 88865543322 1111 11123566777888888855543
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.4e-11 Score=103.20 Aligned_cols=86 Identities=17% Similarity=0.119 Sum_probs=68.9
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-CC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF-PD 166 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~ 166 (305)
..+.+..++...++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...++ .+++++++|+.++.. ..
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcC
Confidence 3333444444335689999999999999999985 68999999999999999999988887 579999999987532 23
Q ss_pred CCeeEEEec
Q 042544 167 NSFDAVYAI 175 (305)
Q Consensus 167 ~~fD~v~~~ 175 (305)
+.||+|++.
T Consensus 239 ~~~D~Vv~d 247 (315)
T PRK03522 239 EVPDLVLVN 247 (315)
T ss_pred CCCeEEEEC
Confidence 579999875
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-10 Score=96.97 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CC-CCCCeeEEEecc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PF-PDNSFDAVYAIE 176 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~-~~~~fD~v~~~~ 176 (305)
++.+|||+|||+|.++..++. .++.+|+|+|+|+.+++.|++++...+ ++++++|+.+. +- ..++||+|+++-
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECC
Confidence 345899999999999999985 456799999999999999999987654 47899998752 21 135799999864
Q ss_pred ccc------ccCChh-----hhhhcCCCCC----cccHHHHHHHHHhCCceEEEe
Q 042544 177 ATC------HAPDAA-----EIEIGDGLPD----IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~------~~~~~~-----~~~~~~~~~~----~~~l~~~~~~L~~gG~~~i~~ 216 (305)
-.. .++... ...+..+..- ..++..+.++|+|||.+++..
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 321 111110 0011111110 125677779999999998864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=98.98 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=86.3
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC-C----
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP-F---- 164 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~---- 164 (305)
..++...+..+|||||||+|..++.++.. .+++|+++|.++...+.|+++++..|+.++++++.+|+.+ ++ +
T Consensus 111 ~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~ 190 (278)
T PLN02476 111 AMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNG 190 (278)
T ss_pred HHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc
Confidence 33444556789999999999999999853 3578999999999999999999999998899999999876 22 1
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+++||+|+.-.. .... ...++.+.+.|+|||.+++..
T Consensus 191 ~~~~FD~VFIDa~-----K~~Y---------~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 191 EGSSYDFAFVDAD-----KRMY---------QDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred cCCCCCEEEECCC-----HHHH---------HHHHHHHHHhcCCCcEEEEec
Confidence 1368999986432 1111 125888899999999988754
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=99.46 Aligned_cols=110 Identities=25% Similarity=0.255 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHHHHhcC--C-CCCeEEEEcCCCCC--CCCCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSS-TSVTGLNNNEYQITRGKELNRFAG--V-DKTCNFVKADFMKM--PFPDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~--~-~~~~~~~~~d~~~~--~~~~~~fD~v 172 (305)
++..+||+||||.|..+..+++++. .+|+.+|+++.+++.|++.+...+ . .++++++.+|+... ..++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4567999999999999999997754 689999999999999999875432 2 45899999998652 1235689999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
++-..-.+.+.... -...+++.++++|+|||.+++.
T Consensus 170 i~D~~dp~~~~~~L-------~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQEL-------FEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhh-------hHHHHHHHHHHhcCCCcEEEEC
Confidence 97543222221111 0123689999999999998764
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.4e-11 Score=95.32 Aligned_cols=113 Identities=21% Similarity=0.277 Sum_probs=86.1
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCC-CCCeEEEEcCCCCC--CCCCCCee
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGV-DKTCNFVKADFMKM--PFPDNSFD 170 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~~d~~~~--~~~~~~fD 170 (305)
...++.|.+|||.+.|-|+.++..++. ++ +|+.++.+|..++.|.-+--..++ ...++++.+|+.+. .|+|++||
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 345667999999999999999999887 55 999999999999988766444333 23689999999873 58899999
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+ | ||-...+...+-...+.++++|+|+|||.++-..
T Consensus 208 aIi------H--DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 208 AII------H--DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred eEe------e--CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 997 3 2222222223444558999999999999988754
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.1e-10 Score=92.63 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=93.6
Q ss_pred cCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCe
Q 042544 74 PRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTC 152 (305)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~ 152 (305)
|+|.++.+.+.+. +.+...-.. .+..+||+|||+|..+..++. .+.++|+++|.|+.++..|.+++.+.++.+++
T Consensus 126 PRpETEE~V~~Vi---d~~~~~~~~-~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 126 PRPETEEWVEAVI---DALNNSEHS-KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred cCccHHHHHHHHH---HHHhhhhhc-ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 6666655544332 222222222 345899999999999999984 46899999999999999999999999998899
Q ss_pred EEEEcCCCC-----CCCCCCCeeEEEecccccccCChhh-------------hhhcCCCC---C-cccHHHHHHHHHhCC
Q 042544 153 NFVKADFMK-----MPFPDNSFDAVYAIEATCHAPDAAE-------------IEIGDGLP---D-IRSTRKCLEALKQAG 210 (305)
Q Consensus 153 ~~~~~d~~~-----~~~~~~~fD~v~~~~~l~~~~~~~~-------------~~~~~~~~---~-~~~l~~~~~~L~~gG 210 (305)
.+++.+++. .+..++.+|+++++-- ++++.+. ..+..|.. + ..++.-+.|.|+|||
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg 279 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGG 279 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCC
Confidence 998766553 2345688999998643 2221110 01111111 1 124566779999999
Q ss_pred ceEEEec
Q 042544 211 FEVIWEK 217 (305)
Q Consensus 211 ~~~i~~~ 217 (305)
++.+...
T Consensus 280 ~~~le~~ 286 (328)
T KOG2904|consen 280 FEQLELV 286 (328)
T ss_pred eEEEEec
Confidence 9988653
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.4e-11 Score=96.66 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 042544 82 RESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF 159 (305)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~ 159 (305)
......+...+.... ...+||||||++|..+..+++. .+++|+.+|+++...+.|++.++..|+.++++++.+|+
T Consensus 30 ~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 30 SPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 333334444444333 4579999999999999999953 36899999999999999999999999988999999999
Q ss_pred CC-CC-----CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 160 MK-MP-----FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 160 ~~-~~-----~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+ ++ .+.++||+|+.-.. . ... ...++.+.++|+|||.+++..
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~----K-~~y---------~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDAD----K-RNY---------LEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEEST----G-GGH---------HHHHHHHHHHEEEEEEEEEET
T ss_pred HhhHHHHHhccCCCceeEEEEccc----c-cch---------hhHHHHHhhhccCCeEEEEcc
Confidence 75 22 12358999986432 1 111 125888889999999888854
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=110.70 Aligned_cols=115 Identities=11% Similarity=0.148 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCCC-CCCCCeeEEEeccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKMP-FPDNSFDAVYAIEA 177 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 177 (305)
++.+|||+|||||.+++.++.....+|+++|+|+.+++.|++++...++. .+++++++|+.++. -..++||+|++.--
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57899999999999999999753357999999999999999999988875 57999999987631 11468999998532
Q ss_pred -ccccCCh-hhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 -TCHAPDA-AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 -l~~~~~~-~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+..-... ........+ ...+..+.++|+|||.+++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y--~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDH--VALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCccchhhhHHHHH--HHHHHHHHHHcCCCCEEEEEe
Confidence 1100000 000000000 114777889999999887754
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=99.01 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=82.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+-.+++|||+|||||.++...|+....+|+|+|-|.-+ +.|++.+..+++...++++++.++++.+|.++.|+|++-++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 45789999999999999999998766899999997655 89999999999988899999999987666788999999775
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
-..+--..... . .+-.=-++|+|||.++=
T Consensus 137 Gy~Ll~EsMld------s--Vl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYESMLD------S--VLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhhhhh------h--hhhhhhhccCCCceEcc
Confidence 33332111100 0 23333478999997643
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-10 Score=91.04 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=63.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~ 177 (305)
.++.+|||+|||+|.++..++.....+|+++|+++.+++.++++++..+.. ++.++++|+.. ++...++||+|++.--
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 457899999999999999755433579999999999999999999888764 79999999876 2222457999997644
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=103.73 Aligned_cols=115 Identities=13% Similarity=0.230 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCCC--C--CCCCeeEEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKMP--F--PDNSFDAVY 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~--~--~~~~fD~v~ 173 (305)
.++.+|||+|||||.+++..+.....+|+++|+|+.+++.|++++...++. .+++++++|+.+.. + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 367899999999999998876543459999999999999999999988875 47999999997631 1 246899999
Q ss_pred ecccccccCChhhh-hhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEI-EIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.-.. ........ ....++ ...+..+.++|+|||.++...
T Consensus 299 lDPP~-f~~~k~~l~~~~~~y--~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPK-FVENKSQLMGACRGY--KDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCC-CCCChHHHHHHHHHH--HHHHHHHHHHcCCCeEEEEEe
Confidence 75332 11111110 000000 013456789999999988754
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.13 E-value=6e-10 Score=95.96 Aligned_cols=109 Identities=22% Similarity=0.221 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCC---CCCeEEEEcCCCC-CCCCCCCeeEEEe
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGV---DKTCNFVKADFMK-MPFPDNSFDAVYA 174 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~d~~~-~~~~~~~fD~v~~ 174 (305)
.+.+||+||||+|..+..+++.+ ..+++++|+++.+++.+++.+...+. .++++++.+|+.. +...+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 44599999999999999888654 57899999999999999997654321 3478888888765 2222478999998
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.......+..... ...+++.+.+.|+|||.+++.
T Consensus 152 D~~~~~~~~~~l~-------~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLF-------TKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchh-------HHHHHHHHHHHhCCCcEEEEc
Confidence 5442221211100 012688999999999998885
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-10 Score=103.23 Aligned_cols=90 Identities=17% Similarity=0.275 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-
Q 042544 84 SIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM- 162 (305)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~- 162 (305)
..+...+.+...+.+.++.+|||+|||+|.++..++.. ..+|+|+|+++.+++.|++++...++ .+++++++|+.+.
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l 353 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHH
Confidence 34444555566667777889999999999999999975 57999999999999999999988776 4799999998752
Q ss_pred ---CCCCCCeeEEEec
Q 042544 163 ---PFPDNSFDAVYAI 175 (305)
Q Consensus 163 ---~~~~~~fD~v~~~ 175 (305)
++.+++||+|++.
T Consensus 354 ~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLD 369 (431)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 2334679999853
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.4e-10 Score=91.87 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=86.5
Q ss_pred CCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC---CCCCCCeeEEEecc
Q 042544 101 GQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM---PFPDNSFDAVYAIE 176 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~fD~v~~~~ 176 (305)
...+||||||.|.++..+| +.|...++|||+....+..|.+++...++. |+.+++.|+..+ -+++++.|-|+..
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~- 126 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYIN- 126 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEE-
Confidence 3589999999999999999 568999999999999999999999998885 899999999862 2456699999875
Q ss_pred cccccCChhh--hhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAAE--IEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|||-. ......+....+++.+.+.|+|||.+.+.+
T Consensus 127 ----FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 127 ----FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred ----CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 444410 000011222347999999999999999876
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=94.82 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhh----cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF----SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
.+.+|||+|||+|.++..+++. ...+|+++|+++.+++.|+++. .++.++++|+...++ +++||+|+++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEEC
Confidence 3679999999999999998853 3469999999999999999764 247899999987655 5689999997
Q ss_pred ccccccCChhhhh-hcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 176 EATCHAPDAAEIE-IGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 176 ~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
--+.-........ .........++..+.+++++|+ +++
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 6544332111000 0000111236777778556555 444
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=87.91 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=67.1
Q ss_pred cCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeE
Q 042544 74 PRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCN 153 (305)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 153 (305)
..|...++...++.. ...+++..|.|+|||.+.++..+.. ..+|+..|+-. .+-.
T Consensus 53 ~~WP~nPvd~iI~~l-------~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------------~n~~ 107 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWL-------KKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------------PNPR 107 (219)
T ss_dssp CTSSS-HHHHHHHHH-------CTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------------SSTT
T ss_pred hcCCCCcHHHHHHHH-------HhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccC----------------CCCC
Confidence 468777766555432 2345567999999999998866542 46899999843 2335
Q ss_pred EEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 154 FVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 154 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++.+|+...|+++++.|+++++.+|..-.-.+ ++.|+.|+|||||.+.|.+.
T Consensus 108 Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~------------fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 108 VTACDIANVPLEDESVDVAVFCLSLMGTNWPD------------FIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp EEES-TTS-S--TT-EEEEEEES---SS-HHH------------HHHHHHHHEEEEEEEEEEEE
T ss_pred EEEecCccCcCCCCceeEEEEEhhhhCCCcHH------------HHHHHHheeccCcEEEEEEe
Confidence 88899999999999999999988766433332 59999999999999999873
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.7e-10 Score=94.63 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=69.2
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
.+.+...+++.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+..++++ .
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~--~ 91 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP--E 91 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch--h
Confidence 344555667778899999999999999999976 67999999999999999987643 24799999999987765 4
Q ss_pred eeEEEecccc
Q 042544 169 FDAVYAIEAT 178 (305)
Q Consensus 169 fD~v~~~~~l 178 (305)
||.|+++...
T Consensus 92 ~d~Vv~NlPy 101 (258)
T PRK14896 92 FNKVVSNLPY 101 (258)
T ss_pred ceEEEEcCCc
Confidence 8999886543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=85.68 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=63.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
+.-.|.+|+|+|||||.+++..+-....+|+|+|+++.+++.+++++... ..++.|+++|+.++. ..+|.|+.+-
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~---~~~dtvimNP 116 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFR---GKFDTVIMNP 116 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcC---CccceEEECC
Confidence 33467899999999999999988765589999999999999999998873 457999999998863 5678777654
Q ss_pred c
Q 042544 177 A 177 (305)
Q Consensus 177 ~ 177 (305)
-
T Consensus 117 P 117 (198)
T COG2263 117 P 117 (198)
T ss_pred C
Confidence 3
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.6e-10 Score=96.21 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=65.8
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+...+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.|++.++++... ++++++++|+..+++++-.+
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCc
Confidence 44555667778899999999999999999976 45999999999999999886532 47999999999887654224
Q ss_pred eEEEecc
Q 042544 170 DAVYAIE 176 (305)
Q Consensus 170 D~v~~~~ 176 (305)
|.|+++-
T Consensus 107 ~~vv~Nl 113 (272)
T PRK00274 107 LKVVANL 113 (272)
T ss_pred ceEEEeC
Confidence 7777653
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8e-10 Score=95.75 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=70.2
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
.+.+...+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++++|+...++ ..
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~ 101 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PY 101 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cc
Confidence 345555677888899999999999999999875 678999999999999999988766655689999999987665 35
Q ss_pred eeEEEec
Q 042544 169 FDAVYAI 175 (305)
Q Consensus 169 fD~v~~~ 175 (305)
||.|+++
T Consensus 102 ~d~VvaN 108 (294)
T PTZ00338 102 FDVCVAN 108 (294)
T ss_pred cCEEEec
Confidence 8988864
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.5e-10 Score=110.03 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=61.5
Q ss_pred CCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCC---------------CCCeEEEEcCCCCCCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGV---------------DKTCNFVKADFMKMPF 164 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~---------------~~~~~~~~~d~~~~~~ 164 (305)
+.+|||+|||+|..++.++. .+..+|+|+|+|+.+++.|++++...++ .++++++++|+.+..-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999995 4568999999999999999999987542 2469999999976321
Q ss_pred C-CCCeeEEEecc
Q 042544 165 P-DNSFDAVYAIE 176 (305)
Q Consensus 165 ~-~~~fD~v~~~~ 176 (305)
. ...||+|+++-
T Consensus 199 ~~~~~fDlIVSNP 211 (1082)
T PLN02672 199 DNNIELDRIVGCI 211 (1082)
T ss_pred ccCCceEEEEECC
Confidence 1 13699999854
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-10 Score=97.77 Aligned_cols=112 Identities=20% Similarity=0.189 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHH--HH---hcC-CCCCeEEEEcCCCC-CCCCCCCee
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKEL--NR---FAG-VDKTCNFVKADFMK-MPFPDNSFD 170 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~--~~---~~~-~~~~~~~~~~d~~~-~~~~~~~fD 170 (305)
....+||+||||+|..+..+.+.+ ..+|++||+++.+++.|++. +. ... ..++++++.+|+.+ +.-.++.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 345699999999999998888764 47999999999999999962 11 111 24689999999987 333457899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++.. +++... ....+-...+++.+++.|+|||.+++..
T Consensus 229 VIIvDl-----~DP~~~-~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDF-----PDPATE-LLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcC-----CCcccc-chhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999763 222100 0000111236899999999999988863
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.1e-10 Score=95.29 Aligned_cols=119 Identities=24% Similarity=0.280 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCCCCCCC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMKMPFPD 166 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~ 166 (305)
....+..+..+.+|..|||-=||||.++....-. |++++|.|++..|+.-|+.+++..++.+ ..+... |+..+|+++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCCC
Confidence 3345566778899999999999999999998765 9999999999999999999999988654 444444 999999998
Q ss_pred CCeeEEEecccccc---cCCh---hhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCH---APDA---AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~---~~~~---~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++|+|++---..- .... ... ..+++.+.++|++||++++..
T Consensus 263 ~~vdaIatDPPYGrst~~~~~~l~~Ly--------~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 263 NSVDAIATDPPYGRSTKIKGEGLDELY--------EEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CccceEEecCCCCcccccccccHHHHH--------HHHHHHHHHHhhcCcEEEEec
Confidence 88999987321110 0000 000 126899999999999999875
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=97.33 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 042544 83 ESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM 162 (305)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~ 162 (305)
...+.....+...+...++.+|||+|||+|.+++.++.. +.+|+|+|+++.+++.|+++++..++. +++++++|+.++
T Consensus 216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~ 293 (374)
T TIGR02085 216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKF 293 (374)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHH
Confidence 333334344444444345679999999999999999965 689999999999999999999888874 799999999763
Q ss_pred CC-CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 163 PF-PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 163 ~~-~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.. ..++||+|++.-.-..+.. .+++.+. .++|++.++++.
T Consensus 294 ~~~~~~~~D~vi~DPPr~G~~~-------------~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 294 ATAQMSAPELVLVNPPRRGIGK-------------ELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred HHhcCCCCCEEEECCCCCCCcH-------------HHHHHHH-hcCCCeEEEEEe
Confidence 21 1245999987532211110 1234443 467888777754
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=90.40 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
...++||||+|.|..+..++.. -.+|++.|.|+.|....++ .| .+++ +..++.-.+.+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg----~~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KG----FTVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CC----CeEE--ehhhhhccCCceEEEeehhhhh
Confidence 4568999999999999999865 4689999999999766554 23 3333 3333333356899999999999
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.-.+|.. .++.+++.|+|+|++++..
T Consensus 163 Rc~~P~~-----------LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 163 RCDRPLT-----------LLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ccCCHHH-----------HHHHHHHHhCCCCEEEEEE
Confidence 8888866 5999999999999998864
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6e-10 Score=104.33 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHH--HHhc---CC-CCCeEEEEcCCCCC-CCCCCCee
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSS-TSVTGLNNNEYQITRGKEL--NRFA---GV-DKTCNFVKADFMKM-PFPDNSFD 170 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~--~~~~---~~-~~~~~~~~~d~~~~-~~~~~~fD 170 (305)
+++.+|||||||+|..+..+++++. .+|+++|+++.+++.++++ .... .. +++++++.+|+.+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999987655 7999999999999999983 2221 11 35799999999873 22357899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++.......+.... +-...+++.+++.|+|||.+++..
T Consensus 376 vIi~D~~~~~~~~~~~------L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGK------LYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhc------cchHHHHHHHHHhcCCCeEEEEec
Confidence 9998643222221110 011226889999999999988854
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=88.10 Aligned_cols=105 Identities=23% Similarity=0.311 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCC-----C-----------------------
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGV-----D----------------------- 149 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~----------------------- 149 (305)
..+..+|||||..|.++..+++. ....|+|+||++..+..|++.++.... .
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 34678999999999999999964 346899999999999999998653210 0
Q ss_pred -------------CCeEEEEcCCCCCCCCCCCeeEEEeccc--ccccC--ChhhhhhcCCCCCcccHHHHHHHHHhCCce
Q 042544 150 -------------KTCNFVKADFMKMPFPDNSFDAVYAIEA--TCHAP--DAAEIEIGDGLPDIRSTRKCLEALKQAGFE 212 (305)
Q Consensus 150 -------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~--l~~~~--~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~ 212 (305)
.+..+...|+. .+....||+|+|..+ .-|+. |.... ++++++.++|.|||++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~---------~ff~kis~ll~pgGiL 205 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLR---------RFFRKISSLLHPGGIL 205 (288)
T ss_pred ccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHH---------HHHHHHHHhhCcCcEE
Confidence 01111111222 233467999998765 33443 22232 2799999999999999
Q ss_pred EE
Q 042544 213 VI 214 (305)
Q Consensus 213 ~i 214 (305)
++
T Consensus 206 vv 207 (288)
T KOG2899|consen 206 VV 207 (288)
T ss_pred EE
Confidence 98
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.1e-10 Score=95.22 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=81.7
Q ss_pred CCeEEEEcCCCChHHHHHH----hhc-----CCeEEEEcCCHHHHHHHHHHHH------------------h--------
Q 042544 101 GQKVLDVGCGIGGPLREIA----QFS-----STSVTGLNNNEYQITRGKELNR------------------F-------- 145 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~----~~~-----~~~v~gvD~s~~~l~~a~~~~~------------------~-------- 145 (305)
.-+|+..||+||.-..-+| +.. ..+|+|+|+|+.+++.|++-.- .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999997333332 321 3689999999999999987520 0
Q ss_pred ----cCCCCCeEEEEcCCCCCCCC-CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 146 ----AGVDKTCNFVKADFMKMPFP-DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 146 ----~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+...|.|.+.|+.+.+++ .+.||+|+|.+++.|+....... +++.+.+.|+|||++++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~---------vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQER---------ILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHH---------HHHHHHHHhCCCcEEEEeC
Confidence 00234689999999875543 57899999999999998776544 6999999999999988864
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=92.06 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=83.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC-C-----CC
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP-F-----PD 166 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~-----~~ 166 (305)
+...+..+|||||+++|..++.++.. ++++|+.+|+++...+.|++.+...|+.++++++++|+.+ ++ + ..
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 33345679999999999999999853 4689999999999999999999999998899999999876 22 1 12
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|+.-.. ... . ...++.+.+.|+|||.+++..
T Consensus 155 ~~fD~iFiDad----K~~-Y---------~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 155 GTFDFIFVDAD----KDN-Y---------INYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred CcccEEEecCC----HHH-h---------HHHHHHHHHhcCCCeEEEEcC
Confidence 68999986432 111 1 125788899999999977743
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=85.19 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEEcCCCCCC----CCCCCee
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAG--VDKTCNFVKADFMKMP----FPDNSFD 170 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~----~~~~~fD 170 (305)
..++.+|||+|||+|..++.++.. ...+|+..|.++ .++..+.+++..+ ...++.+...|..+.. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 456789999999999999999865 578999999998 9999999988765 4567888887765411 2346899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++..++..-..... +++-+.++|+++|.+++..
T Consensus 122 ~IlasDv~Y~~~~~~~-----------L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 122 VILASDVLYDEELFEP-----------LVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEEES--S-GGGHHH-----------HHHHHHHHBTT-TTEEEEE
T ss_pred EEEEecccchHHHHHH-----------HHHHHHHHhCCCCEEEEEe
Confidence 9999999886433333 5888889999999966654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=85.97 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
-.+..|||+|||+|.++...+.....+|++++-| +|.+.|++.++...+.+++.++.+.++++.+| +..|++++--+-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 3678999999999999998887656799999974 78899999999988899999999999998876 568999875443
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..+-+.... ...-..++.|+|.|..+-.
T Consensus 254 ~mL~NERML---------EsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERML---------ESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHH---------HHHHHHHhhcCCCCcccCc
Confidence 333333322 1455667999999987643
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-09 Score=88.15 Aligned_cols=108 Identities=13% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCChHHHHHH----hh----c--CCeEEEEcCCHHHHHHHHHHHH----hcCC-----------------
Q 042544 100 SGQKVLDVGCGIGGPLREIA----QF----S--STSVTGLNNNEYQITRGKELNR----FAGV----------------- 148 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~----~~----~--~~~v~gvD~s~~~l~~a~~~~~----~~~~----------------- 148 (305)
+..+|+..||+||.-...+| +. . ..+|+|+|+|+.+++.|++-.- ..++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 55799999999997333332 31 1 2599999999999999987320 0001
Q ss_pred ------CCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 149 ------DKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 149 ------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...|.|.+.|+.+.+.+.+.||+|+|.+|+-++......+ +++.+.+.|+|||++++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~---------vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQR---------VLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHH---------HHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHH---------HHHHHHHHcCCCCEEEEec
Confidence 1468999999988334467899999999999998887654 6999999999999999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=76.58 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=109.3
Q ss_pred HHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeE
Q 042544 49 DMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSV 126 (305)
Q Consensus 49 ~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v 126 (305)
+.++.-+|....|+..++..-...+..-.+.. ..++.|........|.-|||+|.|||-++..+.++ ....+
T Consensus 3 ~~~~~~f~~e~~F~k~wi~~PrtVGaI~PsSs------~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L 76 (194)
T COG3963 3 NKLARKFDEEISFFKGWIDNPRTVGAILPSSS------ILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESL 76 (194)
T ss_pred hHhhhhHHHHHHHHHHHhcCCceeeeecCCcH------HHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccce
Confidence 34555666666677665544333333222222 23345666778888999999999999999999864 45799
Q ss_pred EEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHH
Q 042544 127 TGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRK 201 (305)
Q Consensus 127 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 201 (305)
++++.|+..+....+.. +.++++.+|+.++. +.+..||.|+|.--+..+|-...++ .+++
T Consensus 77 ~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~ia---------ile~ 141 (194)
T COG3963 77 TAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIA---------ILES 141 (194)
T ss_pred EEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHH---------HHHH
Confidence 99999999998877753 34678999998754 5567899999999888888877755 6999
Q ss_pred HHHHHHhCCceEEEe
Q 042544 202 CLEALKQAGFEVIWE 216 (305)
Q Consensus 202 ~~~~L~~gG~~~i~~ 216 (305)
+...|.+||.++-..
T Consensus 142 ~~~rl~~gg~lvqft 156 (194)
T COG3963 142 LLYRLPAGGPLVQFT 156 (194)
T ss_pred HHHhcCCCCeEEEEE
Confidence 999999999887754
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=86.86 Aligned_cols=80 Identities=18% Similarity=0.278 Sum_probs=64.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+...+.+.++.+|||||||+|.++..+++. ...|+++|+++.+++.++++... ..+++++++|+..++++ .+
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--~~ 92 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--DF 92 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--Hc
Confidence 34455667778899999999999999999976 46799999999999999877642 35799999999987764 46
Q ss_pred e---EEEec
Q 042544 170 D---AVYAI 175 (305)
Q Consensus 170 D---~v~~~ 175 (305)
| +|+++
T Consensus 93 d~~~~vvsN 101 (253)
T TIGR00755 93 PKQLKVVSN 101 (253)
T ss_pred CCcceEEEc
Confidence 6 55554
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.8e-09 Score=84.42 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=89.4
Q ss_pred CCcHHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHH
Q 042544 37 GGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLR 116 (305)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~ 116 (305)
+++.++....|.+.-.. ||.-..-|.. ....|...++...++... ..+....|.|+|||.+..+.
T Consensus 132 t~~s~~A~~lfkedp~a-fdlYH~gfr~-------QV~kWP~nPld~ii~~ik-------~r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 132 TGTSSEAFDLFKEDPTA-FDLYHAGFRS-------QVKKWPENPLDVIIRKIK-------RRPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred cCCcHHHHHHHhcCcHH-HHHHHHHHHH-------HHHhCCCChHHHHHHHHH-------hCcCceEEEecccchhhhhh
Confidence 45566666665554222 3332222221 124677777666555332 22456789999999987765
Q ss_pred HHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCc
Q 042544 117 EIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDI 196 (305)
Q Consensus 117 ~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~ 196 (305)
. -...|+.+|+-+ .+-+++.+|+...|++|++.|+++++.++.-- +...
T Consensus 197 ---~-~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt-n~~d---------- 245 (325)
T KOG3045|consen 197 ---S-ERHKVHSFDLVA----------------VNERVIACDMRNVPLEDESVDVAVFCLSLMGT-NLAD---------- 245 (325)
T ss_pred ---c-cccceeeeeeec----------------CCCceeeccccCCcCccCcccEEEeeHhhhcc-cHHH----------
Confidence 2 246899999832 24578899999999999999999988765432 2222
Q ss_pred ccHHHHHHHHHhCCceEEEec
Q 042544 197 RSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 197 ~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++.++.|+|++||.+.|.+.
T Consensus 246 -f~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 246 -FIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred -HHHHHHHHhccCceEEEEeh
Confidence 69999999999999999873
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=89.23 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhc-CCCCCeEEEE-cCCCCCC----CCCCCeeEE
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFA-GVDKTCNFVK-ADFMKMP----FPDNSFDAV 172 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~-~d~~~~~----~~~~~fD~v 172 (305)
++.+|||||||+|.....++ +.++.+++|+|+++.+++.|+++++.. ++..++++.+ .|...+. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 46799999999998887777 446789999999999999999999998 6877888864 3333221 246789999
Q ss_pred Eecccccc
Q 042544 173 YAIEATCH 180 (305)
Q Consensus 173 ~~~~~l~~ 180 (305)
+|+--++.
T Consensus 194 vcNPPf~~ 201 (321)
T PRK11727 194 LCNPPFHA 201 (321)
T ss_pred EeCCCCcC
Confidence 99866543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-09 Score=97.83 Aligned_cols=115 Identities=20% Similarity=0.225 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCC--C--CCCeEEEEcCCCChHHHHHHhhcCCeEEEE---cCCHHHHHHHHHHHHhcCCCCCeEEEEc
Q 042544 85 IKRHEHFLALQLGL--K--SGQKVLDVGCGIGGPLREIAQFSSTSVTGL---NNNEYQITRGKELNRFAGVDKTCNFVKA 157 (305)
Q Consensus 85 ~~~~~~~l~~~~~~--~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~ 157 (305)
...+.+.+.+.++. . .-..+||+|||+|.++..|.+. +..+..+ |..+.+++.|.++ |++. .+-..
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvpa--~~~~~ 170 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVPA--MIGVL 170 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccch--hhhhh
Confidence 34455555555544 2 2347899999999999999875 4444333 4444555555443 4432 11122
Q ss_pred CCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 158 DFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 158 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
-...+||++++||+|.|..++......+.. ++-++-|+|+|||+++++.
T Consensus 171 ~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~----------~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSRCLIPWHPNDGF----------LLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred ccccccCCccchhhhhcccccccchhcccc----------eeehhhhhhccCceEEecC
Confidence 235689999999999999876554433322 6889999999999999865
|
; GO: 0008168 methyltransferase activity |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=83.36 Aligned_cols=115 Identities=24% Similarity=0.315 Sum_probs=79.4
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCe---------EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTS---------VTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~---------v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d 158 (305)
+..|.......++..|||--||+|.+.++.+. ..... ++|.|+++.+++.|++++...+....+.+.+.|
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 34556677788899999999999999999874 23444 899999999999999999999988889999999
Q ss_pred CCCCCCCCCCeeEEEeccccccc-CChhhh-hhcCCCCCcccHHHHHHHHHh
Q 042544 159 FMKMPFPDNSFDAVYAIEATCHA-PDAAEI-EIGDGLPDIRSTRKCLEALKQ 208 (305)
Q Consensus 159 ~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~-~~~~~~~~~~~l~~~~~~L~~ 208 (305)
+..+++.++++|+|++.--...- ...... .+ -..+++++.++|++
T Consensus 97 ~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~l-----y~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 97 ARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKL-----YRQFLRELKRVLKP 143 (179)
T ss_dssp GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHH-----HHHHHHHHHCHSTT
T ss_pred hhhcccccCCCCEEEECcchhhhccCHHHHHHH-----HHHHHHHHHHHCCC
Confidence 99998777899999986544322 111110 00 01146777778888
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=88.18 Aligned_cols=102 Identities=19% Similarity=0.247 Sum_probs=82.1
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 180 (305)
-...+|+|.|.|..+..+... ..+|-+++.....+..+..... +.|+.+-+|+..- .|.+ |+|++.+++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-----~gV~~v~gdmfq~-~P~~--daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-----PGVEHVAGDMFQD-TPKG--DAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-----CCcceeccccccc-CCCc--CeEEEEeeccc
Confidence 478999999999999999863 3457788887777766555432 2378888898764 4543 79999999999
Q ss_pred cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 181 APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
++|.+.++ ++++|+..|+|+|.+++.+...+
T Consensus 249 wtDedcvk---------iLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 249 WTDEDCVK---------ILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred CChHHHHH---------HHHHHHHhCCCCCEEEEEeccCC
Confidence 99999876 79999999999999999886554
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=85.24 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCe-EEEEcCCCCCC-----CCCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTC-NFVKADFMKMP-----FPDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~~~~~d~~~~~-----~~~~~fD~v 172 (305)
.++.+|||+|||||.++..+++....+|+|+|+++.|+....+. ..++ .+...|+.... ..-..+|++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~------~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvs 147 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ------DERVKVLERTNIRYVTPADIFPDFATFDVS 147 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc------CCCeeEeecCCcccCCHhHcCCCceeeeEE
Confidence 36789999999999999999986456899999999888652211 1122 23333444222 112357777
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++..+ .+..+.+.|+| |.+++.
T Consensus 148 fiS~~~-------------------~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 148 FISLIS-------------------ILPELDLLLNP-NDLTLL 170 (228)
T ss_pred EeehHh-------------------HHHHHHHHhCc-CeEEEE
Confidence 665432 37788999999 776664
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.1e-08 Score=82.80 Aligned_cols=108 Identities=10% Similarity=0.151 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCCChH--HHHH--Hhhc------CCeEEEEcCCHHHHHHHHHHHHh-----cCC----------------
Q 042544 100 SGQKVLDVGCGIGGP--LREI--AQFS------STSVTGLNNNEYQITRGKELNRF-----AGV---------------- 148 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~--~~~l--~~~~------~~~v~gvD~s~~~l~~a~~~~~~-----~~~---------------- 148 (305)
..-+|.-+||+||.- ++.+ .+.. ..+|+|.|||..+|+.|++-.-. .++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 357999999999973 3332 2322 47999999999999998763211 111
Q ss_pred -------CCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 149 -------DKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 149 -------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...|.|...|+..-++..+.||+|+|.+|+.++..+.+.+ .+..++..|+|||++++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~---------il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQER---------ILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHH---------HHHHHHHHhCCCCEEEEcc
Confidence 1357888888877553457799999999999999887755 6999999999999999954
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-09 Score=88.47 Aligned_cols=101 Identities=27% Similarity=0.370 Sum_probs=82.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.+.+..+||+|||.|..+.. +|.+.++|.|++...+..+++. +......+|+..+|+.+.+||.++++.+
T Consensus 43 ~~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred cCCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhh
Confidence 35688999999999865532 3678899999999998877652 1126888999999999999999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+...... ..+++++.++|+|||..++..
T Consensus 113 ihhlsT~~RR--------~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 113 IHHLSTRERR--------ERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhHHHH--------HHHHHHHHHHhcCCCceEEEE
Confidence 9999876543 347999999999999977754
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-08 Score=79.69 Aligned_cols=102 Identities=23% Similarity=0.188 Sum_probs=81.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCC---------CCCeEEEEcCCCCCCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGV---------DKTCNFVKADFMKMPFP 165 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~---------~~~~~~~~~d~~~~~~~ 165 (305)
+.||.+.||+|+|||+++.-++.. ++..++|||.-++.++.+++++...-- ..++.++++|....--+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 679999999999999999988843 344559999999999999998865431 23678899999886666
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+||+|++.....- ..+++...|++||.+++-.
T Consensus 160 ~a~YDaIhvGAaa~~-----------------~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAAASE-----------------LPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccCccc-----------------cHHHHHHhhccCCeEEEee
Confidence 789999988633221 4778889999999999853
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.6e-09 Score=95.82 Aligned_cols=112 Identities=16% Similarity=0.215 Sum_probs=86.0
Q ss_pred CCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeEEEec
Q 042544 99 KSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~ 175 (305)
..+..+||||||.|.++..+| .+|...++|+|++...+..+.+++...++. |+.++..|+..+ -++++++|.|+..
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 346789999999999999999 568899999999999999988888777764 788888887532 2678889999874
Q ss_pred ccccccCChhh--hhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAE--IEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|||-. ......+.+..+++.+.+.|+|||.+.+.+
T Consensus 425 -----FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 425 -----FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -----CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 444421 111112333457999999999999998865
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=75.49 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=59.8
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCCh-HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGG-PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 167 (305)
+++...+...++.+|||||||+|. .+..|++. +.+|+++|+++..++.++++ .++++++|+.+.++. -.
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHh
Confidence 344444544567899999999996 77778765 89999999999999888764 368999999874432 25
Q ss_pred CeeEEEecc
Q 042544 168 SFDAVYAIE 176 (305)
Q Consensus 168 ~fD~v~~~~ 176 (305)
.+|+|++..
T Consensus 77 ~a~liysir 85 (134)
T PRK04148 77 NAKLIYSIR 85 (134)
T ss_pred cCCEEEEeC
Confidence 689998764
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=92.34 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=72.8
Q ss_pred CCeEEEEcCCCChHHHHHHhhc-----CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 101 GQKVLDVGCGIGGPLREIAQFS-----STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
+..|||||||+|.++...++.. ..+|++|+-++.+....++++...++.++|+++++|++++..+ ..+|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5789999999999987765431 3699999999998888888777888888999999999998765 489999985
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
..=. +.+.+.. ...+....+.|||+|.++
T Consensus 266 lLGs-fg~nEl~--------pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGS-FGDNELS--------PECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BT-TBTTTSH--------HHHHHHGGGGEEEEEEEE
T ss_pred ccCC-ccccccC--------HHHHHHHHhhcCCCCEEe
Confidence 4422 2222111 114677778999998654
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=82.27 Aligned_cols=76 Identities=14% Similarity=0.067 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-C-CCC-CeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-F-PDN-SFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-~~~-~fD~v~~~ 175 (305)
++.+|||++||+|.+++.++.+...+|+++|.++.+++.++++++..+...+++++.+|+... . + ... .||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 578999999999999999997644589999999999999999999888766789999999552 2 1 122 36777653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.2e-08 Score=89.48 Aligned_cols=123 Identities=18% Similarity=0.140 Sum_probs=88.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCeeEEE
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSFDAVY 173 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~ 173 (305)
.+.++.+|||+|||.|.=+.++++.. .+.|+++|+++..+...++++.+.|+. ++.+...|...++ ...+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence 66899999999999999999998643 469999999999999999999999885 6888888887643 2236799999
Q ss_pred ----ecc--cccccCChhhhh---hcCCC--CCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 174 ----AIE--ATCHAPDAAEIE---IGDGL--PDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 174 ----~~~--~l~~~~~~~~~~---~~~~~--~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
|++ ++..-|+....- ....+ .....+..+.+.|||||.++.++..+.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 443 333333221000 00000 002368889999999999998876543
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.5e-09 Score=84.87 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
....++|||||.|....++....-.+++-+|.|..|++.++.. +..++ .+...++|-+.++|.++++|+|+++..+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhh
Confidence 3568999999999999999854357899999999999988763 11111 35677889888999999999999999999
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+..+... .+.+|+..|||+|.++-.
T Consensus 149 W~NdLPg-----------~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 149 WTNDLPG-----------SMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhccCch-----------HHHHHHHhcCCCccchhH
Confidence 8887644 588899999999987653
|
|
| >PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases [] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=66.19 Aligned_cols=65 Identities=57% Similarity=1.086 Sum_probs=61.7
Q ss_pred cccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcCC
Q 042544 239 SSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQ 303 (305)
Q Consensus 239 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp~ 303 (305)
..+++..+|+++.+.+...+|.++++|.+..+..+.+..+...+++.++.++|.|+|+++||||.
T Consensus 3 t~~r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPMyl~v~RKP~ 67 (67)
T PF08498_consen 3 TVFRMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPMYLFVARKPE 67 (67)
T ss_pred eEEeccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCchhheeeccCC
Confidence 45688999999999999999999999999999999999999999999999999999999999995
|
; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.5e-08 Score=81.83 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=71.5
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+....+++++..|||||.|||.+|..+.+. +.+|+++++++.|++...++..........+++++|+...++| .|
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~f 124 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RF 124 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--cc
Confidence 44555678899999999999999999999986 8999999999999999999988766567899999999887654 58
Q ss_pred eEEEec
Q 042544 170 DAVYAI 175 (305)
Q Consensus 170 D~v~~~ 175 (305)
|.++++
T Consensus 125 d~cVsN 130 (315)
T KOG0820|consen 125 DGCVSN 130 (315)
T ss_pred ceeecc
Confidence 998873
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.3e-08 Score=73.57 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
-.|+.++|+|||+|-++...+......|+|+||.|..++.+++++....+ ++++.++|..++-+..+.||.++.+.-+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCCC
Confidence 36889999999999999777655467899999999999999999888766 4799999999876667899998876544
Q ss_pred c
Q 042544 179 C 179 (305)
Q Consensus 179 ~ 179 (305)
.
T Consensus 125 G 125 (185)
T KOG3420|consen 125 G 125 (185)
T ss_pred C
Confidence 3
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-08 Score=80.61 Aligned_cols=99 Identities=25% Similarity=0.291 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
..++.+|||+.||.|.+++.++. ..+..|+++|++|..++..+++++..++...+..+++|...+.. .+.||.|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 56899999999999999999996 34678999999999999999999999998889999999988654 68899888643
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCce
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFE 212 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~ 212 (305)
|... ..++..+.+++++||++
T Consensus 178 -----p~~~----------~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 178 -----PESS----------LEFLDAALSLLKEGGII 198 (200)
T ss_dssp -----TSSG----------GGGHHHHHHHEEEEEEE
T ss_pred -----hHHH----------HHHHHHHHHHhcCCcEE
Confidence 2221 12689999999999865
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-08 Score=89.67 Aligned_cols=139 Identities=19% Similarity=0.172 Sum_probs=98.9
Q ss_pred cccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCC
Q 042544 72 FAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKT 151 (305)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 151 (305)
+.++-.-+......+.......+.+...++.+|||+=||.|.+++.+|.. ..+|+|+|+++.+++.|+++++.+++. +
T Consensus 265 ~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N 342 (432)
T COG2265 265 ISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-N 342 (432)
T ss_pred eCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-c
Confidence 33433334455566677777888888888899999999999999999965 789999999999999999999999986 4
Q ss_pred eEEEEcCCCCCCCC---CCCeeEEEecccc--------cccCChhhhhhcCCCCCcccHHHHHHHHHhCCce
Q 042544 152 CNFVKADFMKMPFP---DNSFDAVYAIEAT--------CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFE 212 (305)
Q Consensus 152 ~~~~~~d~~~~~~~---~~~fD~v~~~~~l--------~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~ 212 (305)
++|+.++++++... ...+|.|+.---- ..+.......+.+..++..++.+=.+.|...|+-
T Consensus 343 ~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 343 VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILASTGYE 414 (432)
T ss_pred EEEEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhCCeE
Confidence 99999999985422 3478999863211 1111111112233345555666667777777764
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=5e-08 Score=85.93 Aligned_cols=112 Identities=18% Similarity=0.124 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEEcCCCC-CCCCCCCeeEEEe
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAG---VDKTCNFVKADFMK-MPFPDNSFDAVYA 174 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~-~~~~~~~fD~v~~ 174 (305)
...+||.||+|.|..+..+.+. +..+|+.+|+++.+++.|++.+...+ ..++++++.+|+.. +...+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4569999999999999998865 35789999999999999999865321 24689999999987 3334578999997
Q ss_pred cccccccCChhhhhhcCCCCCcccHH-HHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTR-KCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~gG~~~i~~ 216 (305)
-.. ++........+-...+++ .+.+.|+|||.+++..
T Consensus 183 D~~-----dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-----DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-----CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 521 110000000011122577 8899999999988753
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-07 Score=78.28 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc---------------------------------
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA--------------------------------- 146 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~--------------------------------- 146 (305)
...+||--|||.|.++..+|.. +..+.|.|.|..|+-..+-.+...
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 4579999999999999999987 889999999999985544332210
Q ss_pred ------CCCCCeEEEEcCCCCCCCCC---CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 147 ------GVDKTCNFVKADFMKMPFPD---NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 147 ------~~~~~~~~~~~d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
....++....+|+.+...++ ++||+|+.++.+.-.++.- ..++.+.++|||||.++
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~-----------~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENII-----------EYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHH-----------HHHHHHHHHhccCCEEE
Confidence 00124556667776644334 6899999886655544442 36999999999999544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.1e-08 Score=86.68 Aligned_cols=104 Identities=18% Similarity=0.100 Sum_probs=79.9
Q ss_pred CCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
+.+|||++||+|..++.++.. ...+|+++|+++.+++.++++++..++. ++++.++|+..+....+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 468999999999999999854 3358999999999999999999888774 57799999876321145799998742 1
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
..+.. ++....+.++++|++.++..|..
T Consensus 135 --Gs~~~-----------~l~~al~~~~~~gilyvSAtD~~ 162 (382)
T PRK04338 135 --GSPAP-----------FLDSAIRSVKRGGLLCVTATDTA 162 (382)
T ss_pred --CCcHH-----------HHHHHHHHhcCCCEEEEEecCch
Confidence 11111 57777788999999999865544
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.5e-08 Score=83.86 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=66.0
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDN 167 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~ 167 (305)
++..+.+.++..+||++||.|..+..+++.. .++|+|+|.++.+++.|++++.. ..+++++++|+.++. .+++
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC
Confidence 3445667788899999999999999999653 58999999999999999988754 357999999998743 2222
Q ss_pred --CeeEEEecc
Q 042544 168 --SFDAVYAIE 176 (305)
Q Consensus 168 --~fD~v~~~~ 176 (305)
++|.|++..
T Consensus 88 ~~~vDgIl~DL 98 (296)
T PRK00050 88 LGKVDGILLDL 98 (296)
T ss_pred CCccCEEEECC
Confidence 799999754
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=84.88 Aligned_cols=76 Identities=11% Similarity=0.081 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 83 ESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
...+...+.+...+... +.+|||++||+|.++..+++. ..+|+|+|+++.+++.+++++...++. +++++.+|+.+
T Consensus 190 ~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~ 265 (362)
T PRK05031 190 AVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEE 265 (362)
T ss_pred HHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHH
Confidence 33444455555554432 357999999999999988875 469999999999999999999888774 79999999976
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=84.22 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 85 IKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
.....+.+...+...+ .+|||++||+|.++..+++. ..+|+|+|+++.+++.|++++...++. +++++.+|+.+
T Consensus 183 ~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~ 256 (353)
T TIGR02143 183 NIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHH
Confidence 3444445555554333 47999999999999999876 469999999999999999999888874 69999999976
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=79.04 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=68.8
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC-
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN- 167 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~- 167 (305)
.+.+.+.+.+.++.+|||||+|.|.+|..|++. +.+|+++++++.+++..++... ..++++++++|+...+++.-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhc
Confidence 345556777888899999999999999999987 7889999999999999888764 24589999999999887642
Q ss_pred CeeEEEec
Q 042544 168 SFDAVYAI 175 (305)
Q Consensus 168 ~fD~v~~~ 175 (305)
.++.|+++
T Consensus 95 ~~~~vVaN 102 (259)
T COG0030 95 QPYKVVAN 102 (259)
T ss_pred CCCEEEEc
Confidence 56777764
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.4e-07 Score=72.56 Aligned_cols=96 Identities=25% Similarity=0.237 Sum_probs=76.8
Q ss_pred eEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccccc
Q 042544 103 KVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 181 (305)
+++|||+|.|.-++.++ ..|..+++.+|.+..-+...+..+...++. +++++++.+++ +....+||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~~~~fd~v~aRAv~~-- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEYRESFDVVTARAVAP-- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTTTT-EEEEEEESSSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cccCCCccEEEeehhcC--
Confidence 89999999999999998 678899999999999999999988888986 79999999998 44568899999876532
Q ss_pred CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 182 PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
... .+.-+...|++||.+++.
T Consensus 127 --l~~-----------l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 127 --LDK-----------LLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --HHH-----------HHHHHGGGEEEEEEEEEE
T ss_pred --HHH-----------HHHHHHHhcCCCCEEEEE
Confidence 211 366667778899988774
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7e-08 Score=75.61 Aligned_cols=73 Identities=26% Similarity=0.463 Sum_probs=55.8
Q ss_pred eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCC-eeEEEecc
Q 042544 103 KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNS-FDAVYAIE 176 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-fD~v~~~~ 176 (305)
.|+|+.||.|..++.+|+. ..+|+++|+++..++.|+.+++-.|..++++++++|+.+.. +.... +|+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 6999999999999999986 67999999999999999999999998889999999998732 22222 89999754
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.7e-08 Score=79.47 Aligned_cols=106 Identities=21% Similarity=0.187 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC---CCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP---FPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~~fD~v~~~ 175 (305)
++.++||+-||||.++++...+...+|+.||.++..+...+++++..+...++.++..|+.. ++ ....+||+|++-
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 78999999999999999988765679999999999999999999999887779999999654 21 146789999874
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHH--HHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCL--EALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~~~i~~ 216 (305)
--...-..... .+..+. .+|+++|.+++..
T Consensus 122 PPY~~~~~~~~-----------~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 122 PPYAKGLYYEE-----------LLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp -STTSCHHHHH-----------HHHHHHHTTSEEEEEEEEEEE
T ss_pred CCcccchHHHH-----------HHHHHHHCCCCCCCEEEEEEe
Confidence 32221110011 344444 5677888777765
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.6e-07 Score=73.74 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=73.5
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC--C
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF--P 165 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~ 165 (305)
.++...+.+.||.+|||-|+|+|.++..+++. |-++++.+|+-..-.+.|++..+..++.+++++.+-|+....| .
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 34556788999999999999999999999964 5689999999999999999999999999999999999987444 3
Q ss_pred CCCeeEEEe
Q 042544 166 DNSFDAVYA 174 (305)
Q Consensus 166 ~~~fD~v~~ 174 (305)
+..+|+|+.
T Consensus 175 s~~aDaVFL 183 (314)
T KOG2915|consen 175 SLKADAVFL 183 (314)
T ss_pred ccccceEEE
Confidence 567899876
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=84.11 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCC-C---CCCCCeeEEE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKM-P---FPDNSFDAVY 173 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~-~---~~~~~fD~v~ 173 (305)
.|.+|||+-|=||.++++.+.. |+ +|++||+|...++.|+++++-+|+. .++.++++|+.++ . -...+||+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 4899999999999999999975 55 9999999999999999999999874 4689999999873 1 2235899998
Q ss_pred eccc-ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEA-TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.--. +.--+... .....++ ...+..+.++|+|||.+++.+
T Consensus 296 lDPPsF~r~k~~~-~~~~rdy--~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 296 LDPPSFARSKKQE-FSAQRDY--KDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred ECCcccccCcccc-hhHHHHH--HHHHHHHHHHcCCCCEEEEEe
Confidence 6211 10000000 0000000 125788899999999999875
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-07 Score=74.11 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=85.6
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-----CCCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-----PFPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-----~~~~ 166 (305)
++.+-..+++||||.=||..++.+|.. .+++|+++|+++...+.+.+..+..|...+++++++++.+ + ..+.
T Consensus 68 li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 68 LIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGES 147 (237)
T ss_pred HHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCC
Confidence 344446789999999999998888843 3689999999999999999999999999999999999876 2 1346
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+++.- |..+... ....++.+++++||.+++..
T Consensus 148 ~tfDfaFvD----adK~nY~----------~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 148 GTFDFAFVD----ADKDNYS----------NYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CceeEEEEc----cchHHHH----------HHHHHHHhhcccccEEEEec
Confidence 889999853 3332222 15889999999999888853
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-06 Score=78.20 Aligned_cols=127 Identities=24% Similarity=0.302 Sum_probs=91.1
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhhc---CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCC-
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQFS---STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPD- 166 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~- 166 (305)
...+.+.+|.+|||++++.|.=|.++++.. +..|+++|+++.-+...++++.+.|.. ++.++..|...++ .+.
T Consensus 149 a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 149 ALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPGG 227 (355)
T ss_pred HHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccccccc
Confidence 346888999999999999999999998652 356799999999999999999999986 4788888876543 222
Q ss_pred CCeeEEEe------cccccccCChhhhhhcC---CC--CCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 167 NSFDAVYA------IEATCHAPDAAEIEIGD---GL--PDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 167 ~~fD~v~~------~~~l~~~~~~~~~~~~~---~~--~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+.||.|+. .+++.--|+........ .+ -....+....+.|||||.++.++..+.
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 35999995 23443334331000000 00 012368899999999999999886554
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-07 Score=81.85 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC
Q 042544 79 ESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158 (305)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d 158 (305)
+......+...+.+..+++..++ +|||+-||.|.+++.+|.. ..+|+|+|+++.+++.|++++...++. +++|+.++
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~ 252 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGD 252 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--
T ss_pred cCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEee
Confidence 34445566667777788887766 8999999999999999976 689999999999999999999998875 79999887
Q ss_pred CCCC
Q 042544 159 FMKM 162 (305)
Q Consensus 159 ~~~~ 162 (305)
++++
T Consensus 253 ~~~~ 256 (352)
T PF05958_consen 253 AEDF 256 (352)
T ss_dssp SHHC
T ss_pred ccch
Confidence 7543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-06 Score=76.96 Aligned_cols=130 Identities=12% Similarity=0.087 Sum_probs=91.3
Q ss_pred CCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-----cCCeEEEEcCCHHHHHHHHHHHHhcCCC-
Q 042544 76 WKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-----SSTSVTGLNNNEYQITRGKELNRFAGVD- 149 (305)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~- 149 (305)
|..+.-...++.+...+...+ .++..|+|+|||+|.-+..|.+. ...+++++|+|..+|+.+.+++.....+
T Consensus 54 Yptr~E~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~ 131 (319)
T TIGR03439 54 YLTNDEIEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSH 131 (319)
T ss_pred CChHHHHHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCC
Confidence 344444555666666666654 46679999999999987776532 1468999999999999999888732222
Q ss_pred CCeEEEEcCCCCC----CC--CCCCeeEEEecc-cccccCChhhhhhcCCCCCcccHHHHHH-HHHhCCceEEEe
Q 042544 150 KTCNFVKADFMKM----PF--PDNSFDAVYAIE-ATCHAPDAAEIEIGDGLPDIRSTRKCLE-ALKQAGFEVIWE 216 (305)
Q Consensus 150 ~~~~~~~~d~~~~----~~--~~~~fD~v~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~gG~~~i~~ 216 (305)
-.+.-+++|+.+. +- ......+++..+ ++..++..+... +++++++ .|+|||.++|..
T Consensus 132 l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~---------fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 132 VRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAA---------FLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred eEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHH---------HHHHHHHhhCCCCCEEEEec
Confidence 2344488888652 21 123356666554 788888877654 7999999 999999998864
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.8e-07 Score=72.85 Aligned_cols=89 Identities=21% Similarity=0.277 Sum_probs=68.0
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC---CCCeeEEEecccc
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP---DNSFDAVYAIEAT 178 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD~v~~~~~l 178 (305)
.++|||||=+......-. .-..|+.||+++. .-.+.+.|+.+.|.| ++.||+|.++.|+
T Consensus 53 lrlLEVGals~~N~~s~~--~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS--GWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCccccc--CceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 699999986544333322 2356999999762 235678899887764 6789999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCc-----eEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGF-----EVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~-----~~i~~ 216 (305)
.++|++... ...+..+.+.|+|+|. +++..
T Consensus 115 NfVP~p~~R--------G~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 115 NFVPDPKQR--------GEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred eeCCCHHHH--------HHHHHHHHHHhCCCCccCcceEEEEe
Confidence 999998664 2369999999999999 77753
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-07 Score=76.86 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=83.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcC--C-CCCeEEEEcCCCCC-CCCCCCeeE
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAG--V-DKTCNFVKADFMKM-PFPDNSFDA 171 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~-~~~~~~~~~d~~~~-~~~~~~fD~ 171 (305)
...+ .+||-||.|.|.+++.+.++. -.+++.|||++..++.+++.+.... . +++++++..|..++ .-...+||+
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 3344 699999999999999999763 4799999999999999999876543 2 47899999999873 222347999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|++-..=. . .....+-...+++.++++|+++|.++..
T Consensus 153 Ii~D~tdp-~------gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-V------GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-C------CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 98743322 1 1112233344799999999999999886
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.6e-07 Score=77.82 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=81.9
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--------cCCeEEEEcCCHHHHHHHHHHHHhcCCCC-CeEEEEcC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--------SSTSVTGLNNNEYQITRGKELNRFAGVDK-TCNFVKAD 158 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d 158 (305)
..+++...+...++.+|||.+||+|.++..+.++ ....++|+|+++.++..|+.++.-.+... ...+..+|
T Consensus 34 i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d 113 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD 113 (311)
T ss_dssp HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-
T ss_pred HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccc
Confidence 3455666677788889999999999999887752 46899999999999999988765555432 24588888
Q ss_pred CCCCCCC--CCCeeEEEeccccccc--CChhhhh---hcCCC-----CCcccHHHHHHHHHhCCceEEEe
Q 042544 159 FMKMPFP--DNSFDAVYAIEATCHA--PDAAEIE---IGDGL-----PDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 159 ~~~~~~~--~~~fD~v~~~~~l~~~--~~~~~~~---~~~~~-----~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+.. ...||+|++.-.+... .+..... +.... ....++..+.+.|++||.+.+..
T Consensus 114 ~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 114 SLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 7654332 4789999997644333 2111110 11111 11236788999999999877654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.6e-07 Score=77.58 Aligned_cols=103 Identities=24% Similarity=0.190 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.+|.+|||+=||-|.+++.+|.....+|+++|++|..++..++++..+++...+..+++|....+..-+.+|-|++...-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 46999999999999999999986445599999999999999999999999878999999999876544789999875432
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.... ++..+.+.+++||++.+.+
T Consensus 267 ----~a~~-----------fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 267 ----SAHE-----------FLPLALELLKDGGIIHYYE 289 (341)
T ss_pred ----cchh-----------hHHHHHHHhhcCcEEEEEe
Confidence 2222 5888999999999888876
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-06 Score=70.20 Aligned_cols=122 Identities=18% Similarity=0.133 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCC--CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 042544 85 IKRHEHFLALQLGL--KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM 162 (305)
Q Consensus 85 ~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~ 162 (305)
..+..+.+..++.. -.|.++||+-+|+|.++.+.+.+....++.||.+...+...+++++..+...+++++..|+...
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~ 105 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA 105 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH
Confidence 34445556666654 4789999999999999999987657899999999999999999999998778899999999852
Q ss_pred -C-CC-CCCeeEEEecccccc-cCChhhhhhcCCCCCcccHHH--HHHHHHhCCceEEEec
Q 042544 163 -P-FP-DNSFDAVYAIEATCH-APDAAEIEIGDGLPDIRSTRK--CLEALKQAGFEVIWEK 217 (305)
Q Consensus 163 -~-~~-~~~fD~v~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~--~~~~L~~gG~~~i~~~ 217 (305)
+ .. .+.||+|+.---++. +.+... .+.. -..+|+|+|.+++...
T Consensus 106 L~~~~~~~~FDlVflDPPy~~~l~~~~~-----------~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 106 LKQLGTREPFDLVFLDPPYAKGLLDKEL-----------ALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHhcCCCCcccEEEeCCCCccchhhHHH-----------HHHHHHhcCCcCCCcEEEEEeC
Confidence 1 22 224999987543331 111011 1222 3466899998888754
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-06 Score=66.72 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=76.6
Q ss_pred CCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
...+||||||+|..+..++.. ++..+.++|++|.+++...+.+...+. +++.++.|+... +..++.|+++.+--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-l~~~~VDvLvfNPP- 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-LRNESVDVLVFNPP- 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-hccCCccEEEECCC-
Confidence 568999999999999999854 567899999999999988887776654 478999999873 23488999886542
Q ss_pred cccCChhh------h--hhcCCCCCc----ccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAE------I--EIGDGLPDI----RSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~------~--~~~~~~~~~----~~l~~~~~~L~~gG~~~i~~ 216 (305)
++|.+.. + ....|..-. +++..+-.+|.|.|.+++..
T Consensus 120 -YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 120 -YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred -cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 2222110 0 011111111 24556667788999887754
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.6e-07 Score=75.48 Aligned_cols=164 Identities=21% Similarity=0.194 Sum_probs=95.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC---------------------------CC
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD---------------------------KT 151 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---------------------------~~ 151 (305)
.+|.++||||||+-..-..-+...-.+++..|.++..++..++.++..+.- ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 357899999999854433323222468999999998888777665433210 01
Q ss_pred e-EEEEcCCCCC-CCCC-----CCeeEEEecccccccC-ChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCC
Q 042544 152 C-NFVKADFMKM-PFPD-----NSFDAVYAIEATCHAP-DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDS 223 (305)
Q Consensus 152 ~-~~~~~d~~~~-~~~~-----~~fD~v~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~ 223 (305)
| .++..|+... |+.. .+||+|++.+.++..- +.+.. ...++++.++|||||.+++... .
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y--------~~al~ni~~lLkpGG~Lil~~~-----l 201 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEY--------RRALRNISSLLKPGGHLILAGV-----L 201 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHH--------HHHHHHHHTTEEEEEEEEEEEE-----S
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHH--------HHHHHHHHHHcCCCcEEEEEEE-----c
Confidence 2 4777888763 3332 3599999999988764 44332 2269999999999999998752 1
Q ss_pred CCCCccccCCCcccccccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCc---ccccccceEEEEE
Q 042544 224 PLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGR---KEIFTPMYFFLAR 300 (305)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~ar 300 (305)
...+|..... .. ...+.+.+.+...++++|+.+..... ..-+..+.+++||
T Consensus 202 ~~t~Y~vG~~--------~F------------------~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~ 255 (256)
T PF01234_consen 202 GSTYYMVGGH--------KF------------------PCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVAR 255 (256)
T ss_dssp S-SEEEETTE--------EE------------------E---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEE
T ss_pred CceeEEECCE--------ec------------------ccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEe
Confidence 1122222111 11 11234556788888888887766442 1124455789999
Q ss_pred c
Q 042544 301 K 301 (305)
Q Consensus 301 K 301 (305)
|
T Consensus 256 K 256 (256)
T PF01234_consen 256 K 256 (256)
T ss_dssp E
T ss_pred C
Confidence 8
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-06 Score=66.63 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-----hcCCeEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-----FSSTSVTGLNNNEYQITRGKELNRFAG--VDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
.+..+|+|+|||.|.++..++. .++.+|+|+|.++..++.+.++....+ ...+..+..++....+. ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 5678999999999999999998 568999999999999999999888776 44567777776654322 455678
Q ss_pred EEeccccccc
Q 042544 172 VYAIEATCHA 181 (305)
Q Consensus 172 v~~~~~l~~~ 181 (305)
++..++=..+
T Consensus 103 ~vgLHaCG~L 112 (141)
T PF13679_consen 103 LVGLHACGDL 112 (141)
T ss_pred EEEeecccch
Confidence 8776554433
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-07 Score=77.94 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCC---CCCeEEEEcCCCCC-CCCCC-CeeEEE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGV---DKTCNFVKADFMKM-PFPDN-SFDAVY 173 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~d~~~~-~~~~~-~fD~v~ 173 (305)
...+||=||.|.|..+..+.+.+ ..+|+.||+++.+++.|++.+..... .++++++.+|+..+ .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 56799999999999999999764 47999999999999999997654321 46899999999762 22234 899998
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.-..-...+... +-...+++.+++.|+|+|.+++..
T Consensus 156 ~D~~dp~~~~~~-------l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPN-------LFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGG-------GSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCccc-------ccCHHHHHHHHhhcCCCcEEEEEc
Confidence 743221111111 112337999999999999998865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.4e-06 Score=82.12 Aligned_cols=88 Identities=24% Similarity=0.308 Sum_probs=70.7
Q ss_pred HHHHHHcCC-CCCCeEEEEcCCCChHHHHHHhh-----c--------------------------------------CCe
Q 042544 90 HFLALQLGL-KSGQKVLDVGCGIGGPLREIAQF-----S--------------------------------------STS 125 (305)
Q Consensus 90 ~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-----~--------------------------------------~~~ 125 (305)
..++...+. .++..++|.+||+|.++++.+.. | ..+
T Consensus 179 aa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~ 258 (702)
T PRK11783 179 AAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSK 258 (702)
T ss_pred HHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCce
Confidence 444445554 56789999999999999987631 1 136
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC--CCCeeEEEeccc
Q 042544 126 VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP--DNSFDAVYAIEA 177 (305)
Q Consensus 126 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~v~~~~~ 177 (305)
++|+|+++.+++.|++++...|+.+.+++.++|+.+++.+ .++||+|+++--
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP 312 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP 312 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC
Confidence 9999999999999999999999987899999999887544 357999998754
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.4e-07 Score=73.44 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=77.1
Q ss_pred EEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC-CeeEEEeccc----
Q 042544 104 VLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN-SFDAVYAIEA---- 177 (305)
Q Consensus 104 vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~fD~v~~~~~---- 177 (305)
|.||||..|.+...|.+. ...+++++|+++..++.|++++...++.+++++..+|... +++.+ ..|.|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHHH
Confidence 689999999999999965 3358999999999999999999999998999999999765 23333 3788886553
Q ss_pred ----ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 178 ----TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 178 ----l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+...++.......--+.+..-...++++|...|+.++.+..+.
T Consensus 80 I~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 80 IIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp HHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEEe
Confidence 1111111000000012233458889999999999988775443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-06 Score=74.13 Aligned_cols=83 Identities=22% Similarity=0.280 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCCeeEEEecc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNSFDAVYAIE 176 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~ 176 (305)
...+|||+|||+|..+..+.+. + -.+++++|.|+.|++.++..+.................+ .++ ...|+|++.+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEeh
Confidence 4569999999999866655542 2 368999999999999998877654221111111111111 222 2239999999
Q ss_pred cccccCCh
Q 042544 177 ATCHAPDA 184 (305)
Q Consensus 177 ~l~~~~~~ 184 (305)
+|..+++.
T Consensus 111 ~L~EL~~~ 118 (274)
T PF09243_consen 111 VLNELPSA 118 (274)
T ss_pred hhhcCCch
Confidence 99999884
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.8e-06 Score=67.42 Aligned_cols=97 Identities=24% Similarity=0.295 Sum_probs=76.2
Q ss_pred CCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC-eeEEEecccc
Q 042544 101 GQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS-FDAVYAIEAT 178 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-fD~v~~~~~l 178 (305)
+.+++|||+|.|.-++.+| ..|+.+|+-+|....-+...+......+++ +++++++.++++.-. .. ||+|++..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-KKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-cccCcEEEeehcc
Confidence 5899999999999999998 678889999999999988888888888875 799999999986532 23 9999987543
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
. ... ...-+..++++||.++.
T Consensus 146 ~----L~~-----------l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 S----LNV-----------LLELCLPLLKVGGGFLA 166 (215)
T ss_pred c----hHH-----------HHHHHHHhcccCCcchh
Confidence 2 111 24455677888887654
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-07 Score=82.96 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=70.3
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC
Q 042544 79 ESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158 (305)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d 158 (305)
+....+.+.....+.++++++.+..+||+.||||.+++.+++. -.+|+|+++++..++-|+.++...|+. +++|+++-
T Consensus 362 Q~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gq 439 (534)
T KOG2187|consen 362 QTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQ 439 (534)
T ss_pred ccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCcc-ceeeeecc
Confidence 3445556666777888999999999999999999999999975 689999999999999999999998875 89999997
Q ss_pred CCC
Q 042544 159 FMK 161 (305)
Q Consensus 159 ~~~ 161 (305)
+++
T Consensus 440 aE~ 442 (534)
T KOG2187|consen 440 AED 442 (534)
T ss_pred hhh
Confidence 666
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-06 Score=73.39 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAG---VDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
+...+||=||.|.|..++++.+++ .+|+-|||++.+++.+++.+.... -+++++++.. +.+ -..++||+|++-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 345799999999999999999875 499999999999999999554321 2457777752 211 123689999975
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.. +++. +.+.++++|+|||.++...
T Consensus 147 s~----~~~~------------fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PDIH------------KIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CChH------------HHHHHHHhcCCCcEEEECC
Confidence 32 2222 5889999999999998853
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.9e-07 Score=77.65 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCC-C-C-CCCCeeEEEe
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKM-P-F-PDNSFDAVYA 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~-~-~-~~~~fD~v~~ 174 (305)
..+.+|||+-|=||.+++..+.....+|+.||.|..+++.+++++..+++. .++++++.|+.+. . . ..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 367899999999999999887653358999999999999999999998875 5789999999762 1 1 2468999997
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
--.-. ......+. .++ ...+..+.++|+|||.+++..
T Consensus 202 DPPsF-~k~~~~~~--~~y--~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 202 DPPSF-AKSKFDLE--RDY--KKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp --SSE-ESSTCEHH--HHH--HHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCC-CCCHHHHH--HHH--HHHHHHHHHhcCCCCEEEEEc
Confidence 32100 01100000 000 114677888899999987754
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.3e-07 Score=75.48 Aligned_cols=107 Identities=20% Similarity=0.252 Sum_probs=67.4
Q ss_pred CeEEEEcCC--CChHHHHHHh--hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----------CCC
Q 042544 102 QKVLDVGCG--IGGPLREIAQ--FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----------FPD 166 (305)
Q Consensus 102 ~~vLDiGcG--~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 166 (305)
...|||||| |-..+.++++ .|.++|+-+|..|..+..++..+..... ....++++|+.+.. +.-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 579999999 4557777774 4789999999999999999998765421 23789999998621 111
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
...=.|+...++||++|.+.. ..++..++..|.||.+++++..
T Consensus 149 ~rPVavll~~vLh~v~D~~dp--------~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDP--------AGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTH--------HHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCeeeeeeeeeccCCCccCH--------HHHHHHHHHhCCCCceEEEEec
Confidence 222367888899999884332 1268889999999999999764
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.9e-06 Score=65.83 Aligned_cols=101 Identities=29% Similarity=0.368 Sum_probs=71.1
Q ss_pred EEEEcCCCChHHHHHHhhcC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC--CCCCC-CCeeEEEecccc
Q 042544 104 VLDVGCGIGGPLREIAQFSS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK--MPFPD-NSFDAVYAIEAT 178 (305)
Q Consensus 104 vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~fD~v~~~~~l 178 (305)
++|+|||+|..+ .+..... ..++|+|+++.++..++..... .....+.+...|... +++.+ ..||++ +....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999977 3333222 4899999999999985554332 111116788888876 67776 489999 55544
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
.+...... .+.++.+.|+|+|.+++....
T Consensus 129 ~~~~~~~~-----------~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 129 LHLLPPAK-----------ALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hhcCCHHH-----------HHHHHHHhcCCCcEEEEEecc
Confidence 44333322 599999999999999887654
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.4e-06 Score=74.41 Aligned_cols=89 Identities=26% Similarity=0.323 Sum_probs=73.7
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc-C--------------------------------C-------eEEE
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS-S--------------------------------T-------SVTG 128 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--------------------------------~-------~v~g 128 (305)
+..|..+.+-.++..++|-=||+|.++++.|... + + .++|
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 3455666777788899999999999999988431 0 1 3779
Q ss_pred EcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 129 LNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 129 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+|+++.+++.|+.++...|+.+.|+|.++|+..++-+-+.+|+|+|+--
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP 308 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP 308 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC
Confidence 9999999999999999999999999999999987654368999998753
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=69.67 Aligned_cols=76 Identities=20% Similarity=0.387 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v~~~ 175 (305)
....|+|.-||.|..+..++.+ +..|+++|++|.-+..|+.+++-.|++++++|+++|+.++ .+....+|+|+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 4468999999999999999976 7899999999999999999999999999999999999873 3433445666654
Q ss_pred c
Q 042544 176 E 176 (305)
Q Consensus 176 ~ 176 (305)
.
T Consensus 173 p 173 (263)
T KOG2730|consen 173 P 173 (263)
T ss_pred C
Confidence 3
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.4e-06 Score=71.12 Aligned_cols=83 Identities=23% Similarity=0.253 Sum_probs=65.6
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC--
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD-- 166 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-- 166 (305)
.+.+...+.+.++..|||||+|+|.+|..+++. +.+|+++|+++.+.+..+++.. ..++++++.+|+..+..++
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHhh
Confidence 345556677778999999999999999999987 5999999999999998888654 2468999999999877554
Q ss_pred -CCeeEEEec
Q 042544 167 -NSFDAVYAI 175 (305)
Q Consensus 167 -~~fD~v~~~ 175 (305)
+....|+++
T Consensus 95 ~~~~~~vv~N 104 (262)
T PF00398_consen 95 KNQPLLVVGN 104 (262)
T ss_dssp SSSEEEEEEE
T ss_pred cCCceEEEEE
Confidence 344566654
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-06 Score=75.89 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=80.7
Q ss_pred CCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCeeEEEeccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSFDAVYAIEA 177 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 177 (305)
+.+|||+.||+|..++.++.. ...+|+++|+++..++.++++++..+.. ++++++.|+..+- .....||+|..--
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 358999999999999999964 2368999999999999999999887664 6889999988642 1235799997632
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+ ..+. . +++.+.+.++++|.+.++..|..
T Consensus 123 f-Gs~~--~-----------fld~al~~~~~~glL~vTaTD~~ 151 (374)
T TIGR00308 123 F-GTPA--P-----------FVDSAIQASAERGLLLVTATDTS 151 (374)
T ss_pred C-CCcH--H-----------HHHHHHHhcccCCEEEEEecccH
Confidence 2 1111 1 68899999999999999865443
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7e-07 Score=73.20 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=63.9
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHH-------hcCC-CCCeEEEEcCCCCC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNR-------FAGV-DKTCNFVKADFMKM 162 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~-------~~~~-~~~~~~~~~d~~~~ 162 (305)
++..+++.++...+|||||.|......+...++ +.+||++.+...+.|+.... ..|. ..++++.++|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 445677889999999999999999988844354 59999999988877765332 2332 34678889998763
Q ss_pred CCCC---CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 163 PFPD---NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 163 ~~~~---~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++.. ...|+|++++... ++... ..+.+....||+|-++ |...
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F---~~~l~---------~~L~~~~~~lk~G~~I-Is~~ 158 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCF---DPDLN---------LALAELLLELKPGARI-ISTK 158 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT----HHHH---------HHHHHHHTTS-TT-EE-EESS
T ss_pred HhHhhhhcCCCEEEEecccc---CHHHH---------HHHHHHHhcCCCCCEE-EECC
Confidence 3211 3368999877532 22221 1356666677776654 4443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.1e-06 Score=64.96 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=77.6
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccccc
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 181 (305)
..+.|+|+|+|.++...++. ..+|++++.+|.....|.+++.-.|. .+++++.+|+.+..| +..|+|+|-..=..+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHHh
Confidence 68999999999999988876 68999999999999999998765554 489999999998877 347999875432222
Q ss_pred CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 182 PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
-+..+ +..++.+.+.|+..+.++-.
T Consensus 110 i~E~q---------VpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 110 IEEKQ---------VPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hcccc---------cHHHHHHHHHhhcCCccccH
Confidence 22222 23678888888888876543
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=63.55 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
-.+++|||+|+|+|..++..+......|+..|+.|......+-+++.++. .+.+...|.-. ++..||++++..++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~~~~~Dl~LagDlf 152 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---SPPAFDLLLAGDLF 152 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---CCcceeEEEeecee
Confidence 36899999999999999988876567999999998888887878777765 47888888765 45679999999887
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..-+.... .+. +.+.|+..|..++.
T Consensus 153 y~~~~a~~-----------l~~-~~~~l~~~g~~vlv 177 (218)
T COG3897 153 YNHTEADR-----------LIP-WKDRLAEAGAAVLV 177 (218)
T ss_pred cCchHHHH-----------HHH-HHHHHHhCCCEEEE
Confidence 65444443 344 78888888876664
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.6e-06 Score=70.86 Aligned_cols=125 Identities=23% Similarity=0.281 Sum_probs=88.4
Q ss_pred HHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-CCCCCe
Q 042544 94 LQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-FPDNSF 169 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~f 169 (305)
..+.+.++.+|||++++.|.=+..+++.. .+.|++.|+++.-+...++++.+.|.. ++.....|.... + .....|
T Consensus 79 ~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 79 LALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp HHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTE
T ss_pred ccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccccccccccc
Confidence 35678899999999999999999998542 589999999999999999999999875 677777777654 1 223469
Q ss_pred eEEEe------cccccccCChhhhhhcCCC-----CCcccHHHHHHHH----HhCCceEEEeccC
Q 042544 170 DAVYA------IEATCHAPDAAEIEIGDGL-----PDIRSTRKCLEAL----KQAGFEVIWEKDL 219 (305)
Q Consensus 170 D~v~~------~~~l~~~~~~~~~~~~~~~-----~~~~~l~~~~~~L----~~gG~~~i~~~~~ 219 (305)
|.|+. .+++..-|+.....-...+ .....++.+.+.+ +|||+++.++..+
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 99995 2234444443111000000 0123688889999 9999999988544
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.3e-07 Score=72.51 Aligned_cols=105 Identities=24% Similarity=0.209 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------CC--CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------FP--DN 167 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~--~~ 167 (305)
++.+|||+||++|.|+..+.+.. ..+|+|+|+.+.. . ...+.++++|+.... ++ .+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~-~~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------P-LQNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------c-ccceeeeecccchhhHHHhhhhhcccccc
Confidence 45899999999999999999763 5899999998751 1 124555566654310 11 26
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+|-.+...-.+.........--.+..+.-+.+.|+|||.+++..
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 8999998664332222100000000000113555567899999988865
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-05 Score=64.26 Aligned_cols=99 Identities=21% Similarity=0.150 Sum_probs=68.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------CCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------FPDN 167 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~ 167 (305)
+.++.+|+|+||-.|.|+..+++..+ ..|+|+|+.|--. .+++.++++|+..-+ +...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------------~~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------------IPGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------------CCCceEEeeeccCccHHHHHHHHcCCC
Confidence 46789999999999999999996533 4599999976332 246999999998633 3345
Q ss_pred CeeEEEecccc--------cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEAT--------CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l--------~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|++-.+- .|....... ...+.-+..+|+|||.+++..
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~--------~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLC--------ELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHH--------HHHHHHHHHeeCCCCeEEEEE
Confidence 57999874432 111111111 114556677999999999875
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.3e-05 Score=61.88 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=71.2
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 168 (305)
.+++.+|.+||-+|..+|....+++.- +.+.|++|+.|+......-..++. .+|+-.+..|+... .+ -+.
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y~~l-v~~ 143 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKYRML-VEM 143 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGGTTT-S--
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHhhcc-ccc
Confidence 356789999999999999999999864 468999999999665444333333 35788899999852 12 247
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+|++- +..+++.++ ++.++...||+||.+++..
T Consensus 144 VDvI~~D-----VaQp~Qa~I--------~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQD-----VAQPDQARI--------AALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE------SSTTHHHH--------HHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEec-----CCChHHHHH--------HHHHHHhhccCCcEEEEEE
Confidence 8999763 333444332 5788888999999998864
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.3e-05 Score=61.17 Aligned_cols=121 Identities=10% Similarity=0.019 Sum_probs=87.7
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc-
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA- 177 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~- 177 (305)
.+.++.||||-.+++...+.. .+...+++.|+++..++.|.+++...++.+++++..+|....--+++.+|.|+..++
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 566799999999999999984 467899999999999999999999999988999999998652223447898887654
Q ss_pred ---ccccCChhhhhhc----CCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 178 ---TCHAPDAAEIEIG----DGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 178 ---l~~~~~~~~~~~~----~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+..+-+.....+. -.+.+..-...++++|...++-+..+.-+.
T Consensus 96 G~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ile 145 (226)
T COG2384 96 GTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETILE 145 (226)
T ss_pred HHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeeeec
Confidence 1111111111111 012222346789999999999888776554
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.7e-06 Score=63.93 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=61.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHH
Q 042544 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKC 202 (305)
Q Consensus 125 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 202 (305)
+|+|+||.+.+++.+++++...+..+++++++.+-+.+. .+++++|+++. .+.++|..+..-....-+.+..++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iF--NLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIF--NLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEE--EESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEE--ECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 689999999999999999999988888999998887754 23347898875 46777765432111111224468899
Q ss_pred HHHHHhCCceEEEe
Q 042544 203 LEALKQAGFEVIWE 216 (305)
Q Consensus 203 ~~~L~~gG~~~i~~ 216 (305)
.++|+|||.+.+..
T Consensus 79 l~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 79 LELLKPGGIITIVV 92 (140)
T ss_dssp HHHEEEEEEEEEEE
T ss_pred HHhhccCCEEEEEE
Confidence 99999999998865
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.6e-05 Score=69.17 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=63.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.++.++|||||++|.|+..+.+. +.+|++||.++-. .. +. ..++|.....|...+..+.+.+|.++|-.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~l~-~~----L~---~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGPMA-QS----LM---DTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechhcC-Hh----hh---CCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 468999999999999999999987 7899999965422 11 11 145788888888765333577999988544
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhC
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA 209 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g 209 (305)
..|.. +.+-+.++|..|
T Consensus 280 ----e~P~r-----------va~lm~~Wl~~g 296 (357)
T PRK11760 280 ----EKPAR-----------VAELMAQWLVNG 296 (357)
T ss_pred ----cCHHH-----------HHHHHHHHHhcC
Confidence 22333 467777888765
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.6e-05 Score=64.30 Aligned_cols=90 Identities=18% Similarity=0.150 Sum_probs=71.3
Q ss_pred HHHHHHcCCCCCC--eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc------C--CCCCeEEEEcCC
Q 042544 90 HFLALQLGLKSGQ--KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA------G--VDKTCNFVKADF 159 (305)
Q Consensus 90 ~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~--~~~~~~~~~~d~ 159 (305)
+.+....+++++. +|||+-+|+|..+..++.. +++|+++|-++......+..+... + +..+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 5666777888887 9999999999999999986 888999999999999888887764 2 224688999998
Q ss_pred CCC-CCCCCCeeEEEecccccc
Q 042544 160 MKM-PFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 160 ~~~-~~~~~~fD~v~~~~~l~~ 180 (305)
..+ .-...+||+|+.--.+.|
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCC
Confidence 763 222347999998655555
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.7e-05 Score=68.35 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=85.9
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccccc
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 181 (305)
.++|-+|||.-.++..+-+.....|+-+|+|+..++....+... ...-..+...|+..+.|++++||+|+..+.+.++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 39999999999888888766567999999999999887765432 1345789999999999999999999999988887
Q ss_pred CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 182 PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
-......... ......+.++.++|++||..+....
T Consensus 128 ~~de~a~~~~-~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNT-AHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhh-HHhhHHHhhHHHHhccCCEEEEEEe
Confidence 5443221100 1112358899999999998776553
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.6e-05 Score=60.35 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=48.7
Q ss_pred eEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 103 KVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
++||+|||.|.++..++.. +..+|+++|+++.+.+.++++++..+.. ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 4899999999999999854 4568999999999999999998877664 58888777654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.8e-05 Score=66.09 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHH--HHhcC----CCCCeEEEEcCCCCC-CCCCCCee
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKEL--NRFAG----VDKTCNFVKADFMKM-PFPDNSFD 170 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~--~~~~~----~~~~~~~~~~d~~~~-~~~~~~fD 170 (305)
+...+||-+|.|.|.-++++.++| -.+++-+|++|.|++.++.+ .+..+ .+++++++..|+..+ .-..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 455789999999999999999988 47999999999999999843 22222 146899999998874 22345899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.|+. .++||....++. +-+..+..-+.+.|+++|.+++..
T Consensus 368 ~vIV-----Dl~DP~tps~~r-lYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 368 VVIV-----DLPDPSTPSIGR-LYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEE-----eCCCCCCcchhh-hhhHHHHHHHHHhcCcCceEEEec
Confidence 9875 456653321111 222346788889999999999864
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.2e-05 Score=63.83 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=62.9
Q ss_pred CCeEEEEcCCCChHHHH-HHhh--cCCeEEEEcCCHHHHHHHHHHHH-hcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 101 GQKVLDVGCGIGGPLRE-IAQF--SSTSVTGLNNNEYQITRGKELNR-FAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~-l~~~--~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
..+|+=||||.==++.. +++. .+..|+++|+++..++.+++.+. ..++..++.|+.+|....+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35999999997655544 4433 36789999999999999999887 55667789999999987654446799998765
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
....-..+... .+.++.+.++||..+++-
T Consensus 201 lVg~~~e~K~~----------Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEE----------ILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHH----------HHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHH----------HHHHHHhhCCCCcEEEEe
Confidence 44432222221 699999999999977773
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.8e-05 Score=65.42 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=67.1
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP 165 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 165 (305)
++..+.+.++..++|.-||.|..+..+++. +.++|+|+|.++.+++.+++++... ..++.++++++.++. ..
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~ 89 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELL 89 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcC
Confidence 444667778889999999999999999964 4589999999999999999987654 357999999998743 23
Q ss_pred CCCeeEEEecc
Q 042544 166 DNSFDAVYAIE 176 (305)
Q Consensus 166 ~~~fD~v~~~~ 176 (305)
.+++|.|+.-.
T Consensus 90 ~~~vDgIl~DL 100 (305)
T TIGR00006 90 VTKIDGILVDL 100 (305)
T ss_pred CCcccEEEEec
Confidence 45799998743
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.9e-05 Score=69.81 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhhc---------CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFS---------STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP 165 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 165 (305)
...+|||.|||+|.++..++... ...++|+|+++..+..++.++...+. ..+.+.+.|..... -.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45699999999999999887431 25789999999999999988776541 23455655543211 11
Q ss_pred CCCeeEEEecccc
Q 042544 166 DNSFDAVYAIEAT 178 (305)
Q Consensus 166 ~~~fD~v~~~~~l 178 (305)
.+.||+|+++--.
T Consensus 110 ~~~fD~IIgNPPy 122 (524)
T TIGR02987 110 LDLFDIVITNPPY 122 (524)
T ss_pred cCcccEEEeCCCc
Confidence 2579999997543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=62.69 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=49.4
Q ss_pred CCeEEEEcCCCChHHHHH-HhhcCCeEEEEcCCHHHHHHHHHHHHhc-CCCCCeEEEEcCCCC-----CCCCCCCeeEEE
Q 042544 101 GQKVLDVGCGIGGPLREI-AQFSSTSVTGLNNNEYQITRGKELNRFA-GVDKTCNFVKADFMK-----MPFPDNSFDAVY 173 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l-~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~-----~~~~~~~fD~v~ 173 (305)
.-++||||||....--.| ++..+.+++|.|+++..++.|++++... ++..+|+++...-.. +..+++.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 458999999977543333 3445899999999999999999999999 888899987664322 112346899999
Q ss_pred ecccccccC
Q 042544 174 AIEATCHAP 182 (305)
Q Consensus 174 ~~~~l~~~~ 182 (305)
|+--++.-.
T Consensus 183 CNPPFy~s~ 191 (299)
T PF05971_consen 183 CNPPFYSSQ 191 (299)
T ss_dssp E-----SS-
T ss_pred cCCccccCh
Confidence 976665443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0001 Score=59.46 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-CCCCCCeeEEEecc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-PFPDNSFDAVYAIE 176 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~v~~~~ 176 (305)
.+|.+||.||-|-|.....+.+.+..+=+.++..|..++..+.... ...+++....+-.++ + .++|+.||-|+---
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw--~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGW--REKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccc--ccccceEEEecchHhhhccccccCcceeEeec
Confidence 5788999999999999999987766777889999999887766432 224577777777665 2 36789999998643
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.-.+..+... +.+.+.++|||+|.+-..
T Consensus 178 y~e~yEdl~~-----------~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 178 YSELYEDLRH-----------FHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhhHHHHHHH-----------HHHHHhhhcCCCceEEEe
Confidence 3333333322 577899999999987664
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.2e-05 Score=65.91 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=85.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~f 169 (305)
.+.+.+|.||||+++-.|.=+.++|.. -.+.|++.|.+..-+...+.++.+.|.. +..+...|...+| ++. +|
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~-~f 313 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPG-SF 313 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCc-cc
Confidence 356788999999999999988888843 3579999999999999999999999975 5667777776665 444 89
Q ss_pred eEEEe----cc--cccccCCh---hhhhhcCCCCC--cccHHHHHHHHHhCCceEEEeccCC
Q 042544 170 DAVYA----IE--ATCHAPDA---AEIEIGDGLPD--IRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 170 D~v~~----~~--~l~~~~~~---~~~~~~~~~~~--~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
|-|+. ++ ++.--+.. ....-...+.. -+.+..+..++++||+++.++..+.
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 99984 22 21111100 00000000000 1257777889999999999886554
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5e-06 Score=66.46 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=68.4
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 180 (305)
+.++||+|+|.|..+..++.. -.+|++.+.|..|..+.+++ +..++ ...++.-.+-+||+|.|.+.+.-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk--------~ynVl--~~~ew~~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK--------NYNVL--TEIEWLQTDVKLDLILCLNLLDR 181 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc--------CCcee--eehhhhhcCceeehHHHHHHHHh
Confidence 469999999999999999854 35799999999999877653 12222 12222222456999999988865
Q ss_pred cCChhhhhhcCCCCCcccHHHHHHHHHh-CCceEEE
Q 042544 181 APDAAEIEIGDGLPDIRSTRKCLEALKQ-AGFEVIW 215 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~~~i~ 215 (305)
--++-. .++.++.+|+| +|.+++.
T Consensus 182 c~~p~k-----------LL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 182 CFDPFK-----------LLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred hcChHH-----------HHHHHHHHhccCCCcEEEE
Confidence 555544 69999999999 8887775
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=58.48 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGV------DKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
..-.+.|||||-|.++..++ .+|..-+.|++|-...-+..++++.+... -.++.+...+.... -.+-|..-
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kg 137 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKG 137 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhc
Confidence 34579999999999999999 67889999999999999999888876642 13455665555442 12223332
Q ss_pred EecccccccCChhhhhhc--CCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIG--DGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+-.+..+|++...+.. ..+..-..+.+..-+|++||.++..+
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 233334456666432211 11112235888889999999888765
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.8e-05 Score=58.92 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=71.2
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHH----HHHHHH-HHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQI----TRGKEL-NRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l----~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
..+++++++|+|+=.|.|.|+..++.. +.+.|+++-..+... +..+.+ +.+.....+++.+-.+...++ +.+
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQ 121 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCC
Confidence 457899999999999999999999965 345777765543311 101111 111111235566666666655 456
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
..|+++....-|.+..... .+-..-.+...+.+.|||||.+++.++..
T Consensus 122 ~~d~~~~~~~yhdmh~k~i----~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNI----HPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred cccccccchhhhhhhcccc----CcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 6788876443332221100 00000115788999999999999988644
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00054 Score=54.95 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=77.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCeeE
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSFDA 171 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~ 171 (305)
+++.++.+||=+|+.+|....+++.- ..+.+++|+.|+.+....-..+.. .+|+--+..|+.... .-=+..|+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhhhcccccE
Confidence 57889999999999999999999964 358899999999887655554443 357888999997521 11245788
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+. .+..+.+.++ +..++...|++||.+++..
T Consensus 149 iy~-----DVAQp~Qa~I--------~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 149 IYQ-----DVAQPNQAEI--------LADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEE-----ecCCchHHHH--------HHHHHHHhcccCCeEEEEE
Confidence 864 4545544433 6788899999999777654
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00033 Score=58.21 Aligned_cols=90 Identities=30% Similarity=0.380 Sum_probs=55.3
Q ss_pred HHHHHHcCCCCCC--eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc--CCC------CCeEEEEcCC
Q 042544 90 HFLALQLGLKSGQ--KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA--GVD------KTCNFVKADF 159 (305)
Q Consensus 90 ~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~------~~~~~~~~d~ 159 (305)
+.+....+++++. +|||+-+|-|.-+..++.. |++|++++-||.+....+.-+... +.. .+++++++|.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 3455566777764 8999999999999999865 899999999998776655433221 111 3789999999
Q ss_pred CC-CCCCCCCeeEEEecccccc
Q 042544 160 MK-MPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 160 ~~-~~~~~~~fD~v~~~~~l~~ 180 (305)
.+ ++.++++||+|+.--++.+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 87 5666789999998766655
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.54 E-value=5.3e-06 Score=60.79 Aligned_cols=99 Identities=19% Similarity=0.292 Sum_probs=40.5
Q ss_pred EEEcCCCChHHHHHHhh--cC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeEEEecccc
Q 042544 105 LDVGCGIGGPLREIAQF--SS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAVYAIEAT 178 (305)
Q Consensus 105 LDiGcG~G~~~~~l~~~--~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~~~l 178 (305)
||||+..|..+..+++. .. .+++++|..+. .+.+++.++..+...+++++.++..+. .++.+++|+++.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999999888742 22 37999999985 333444444455566899999998752 133578999986432
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|-.... ...+..+...|+|||++++.+
T Consensus 79 -H~~~~~----------~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 -HSYEAV----------LRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHH----------HHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCHHHH----------HHHHHHHHHHcCCCeEEEEeC
Confidence 111111 114777888899999888754
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00055 Score=51.93 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=66.1
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
++.++.-.+..+.+|+|+|.|......++..-...+|++++|-.+..++-..-+.++.....|..-|+...++.| |..
T Consensus 64 VLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d--y~~ 141 (199)
T KOG4058|consen 64 VLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD--YRN 141 (199)
T ss_pred HHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc--cce
Confidence 344566567679999999999999888875336789999999999999988888888888999999998877655 444
Q ss_pred EEeccc
Q 042544 172 VYAIEA 177 (305)
Q Consensus 172 v~~~~~ 177 (305)
|+...+
T Consensus 142 vviFga 147 (199)
T KOG4058|consen 142 VVIFGA 147 (199)
T ss_pred EEEeeh
Confidence 444333
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00044 Score=57.68 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=58.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
+++..+|+|||||.==++..+.. .++..++|+||+..+++.....+...+. ..++.+.|+..-+ +....|+.+..=
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-~~~~~DlaLllK 179 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-PKEPADLALLLK 179 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-TTSEESEEEEET
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-CCCCcchhhHHH
Confidence 34568999999999888887763 3568999999999999999998888765 4677778887643 346789998766
Q ss_pred cccccC
Q 042544 177 ATCHAP 182 (305)
Q Consensus 177 ~l~~~~ 182 (305)
+++.+.
T Consensus 180 ~lp~le 185 (251)
T PF07091_consen 180 TLPCLE 185 (251)
T ss_dssp -HHHHH
T ss_pred HHHHHH
Confidence 655443
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00047 Score=54.55 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=48.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCCC--------CCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMKM--------PFPD 166 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~--------~~~~ 166 (305)
+.|+.+|||+||..|.|+.-..+. |.+.|.|||+-.-. ..+.+.++++ |+.+. ..|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE------------PPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc------------CCCCcccccccccCCHHHHHHHHHhCCC
Confidence 467899999999999999887743 77899999984321 1234556665 66651 1466
Q ss_pred CCeeEEEecc
Q 042544 167 NSFDAVYAIE 176 (305)
Q Consensus 167 ~~fD~v~~~~ 176 (305)
...|+|++-.
T Consensus 135 r~VdvVlSDM 144 (232)
T KOG4589|consen 135 RPVDVVLSDM 144 (232)
T ss_pred CcccEEEecc
Confidence 7789998743
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00014 Score=56.03 Aligned_cols=106 Identities=16% Similarity=0.217 Sum_probs=69.6
Q ss_pred CCCeEEEEcCC-CChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEEcCCCC--CCCCCCCeeEEE
Q 042544 100 SGQKVLDVGCG-IGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGV--DKTCNFVKADFMK--MPFPDNSFDAVY 173 (305)
Q Consensus 100 ~~~~vLDiGcG-~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~--~~~~~~~fD~v~ 173 (305)
.|.+||++|.| ||..++.+| ..+...|...|-++..++..++.....-. -.++....-+... .......||.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 46799999999 666666666 44678999999999999887775443311 1123222222221 112345899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|...+..-..... .++.++..|+|.|..++..
T Consensus 109 aADClFfdE~h~s-----------LvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 109 AADCLFFDEHHES-----------LVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred eccchhHHHHHHH-----------HHHHHHHHhCcccceeEec
Confidence 9886544332222 5888999999999977754
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00081 Score=59.97 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=70.3
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecccccc
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIEATCH 180 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~~l~~ 180 (305)
..|||||+|||.++...++..+-.|++++.-..|.+.|++.....|..+++.++.-.-.+.... ....|+++.-.....
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE 147 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE 147 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh
Confidence 4699999999999888776656789999999999999999999999988998887665553321 223455543222111
Q ss_pred cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 181 APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
+ ++.| .++.++++.+.|-..|.-.+
T Consensus 148 l-------igeG--alps~qhAh~~L~~~nc~~V 172 (636)
T KOG1501|consen 148 L-------IGEG--ALPSLQHAHDMLLVDNCKTV 172 (636)
T ss_pred h-------hccc--cchhHHHHHHHhcccCCeec
Confidence 1 1111 12357788777765554433
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0021 Score=53.10 Aligned_cols=97 Identities=19% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeE-EEEcCCCCCC---CCCCCeeEEEe
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCN-FVKADFMKMP---FPDNSFDAVYA 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~-~~~~d~~~~~---~~~~~fD~v~~ 174 (305)
.++..+||||+.||.++..+.+....+|+|+|....++.---+ ..+++. +...|+..+. +. +..|++++
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~ 150 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRYLTPEDFT-EKPDLIVI 150 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh------cCCcEEEEecCChhhCCHHHcc-cCCCeEEE
Confidence 3678999999999999999998766899999999877753222 133443 3444555432 22 35788887
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
--++-.+.. .+..+..+++++|.++...
T Consensus 151 DvSFISL~~--------------iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 151 DVSFISLKL--------------ILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred EeehhhHHH--------------HHHHHHHhcCCCceEEEEe
Confidence 554443222 4888899999999877743
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0034 Score=55.24 Aligned_cols=96 Identities=21% Similarity=0.258 Sum_probs=68.3
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC-CCCCCCCCCCeeEEE
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD-FMKMPFPDNSFDAVY 173 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~fD~v~ 173 (305)
..+.|+.+|+=+|+| .|..+..+++..+++|+++|.|+.-++.|++. |. -.++... .....--.+.||+|+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~~~~~d~ii 234 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAVKEIADAII 234 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHhHhhCcEEE
Confidence 467889999999987 45678888875689999999999999998885 22 2334332 211111123489988
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..-. .+ .+....+.|+++|.+++.-
T Consensus 235 ~tv~-~~-----------------~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 235 DTVG-PA-----------------TLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred ECCC-hh-----------------hHHHHHHHHhcCCEEEEEC
Confidence 6533 21 5888999999999999865
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=5.7e-05 Score=57.68 Aligned_cols=60 Identities=27% Similarity=0.286 Sum_probs=48.5
Q ss_pred eEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 152 CNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 152 ~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+++++......+|.+++.|+|++.++++|+.-.+... +++++.+.|||||.+-+..+++.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~---------alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTS---------ALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHH---------HHHHHHHHhCcCcEEEEEcCCcc
Confidence 4444444455689999999999999999998766543 79999999999999999876654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00058 Score=62.23 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=63.8
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcC--CHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNN--NEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~--s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
-..|+|..+|.|.++..|.+.+ .-|.-|=+ .+..+...- ..|+ +-..+.=.+.++.-+.+||+|.+.+++
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~-VWVMNVVP~~~~ntL~vIy----dRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDP-VWVMNVVPVSGPNTLPVIY----DRGL---IGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeeecccccHHHHHhccCC-ceEEEecccCCCCcchhhh----hccc---chhccchhhccCCCCcchhheehhhhh
Confidence 3579999999999999998653 22222211 122222221 1233 222222223355556899999999998
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+.-.. ..++-++-|+|+|+|.++|-+
T Consensus 438 s~~~~rC~~--------~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEM--------EDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhcccccH--------HHHHHHhHhhcCCCceEEEec
Confidence 887665332 126889999999999999865
|
; GO: 0008168 methyltransferase activity |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=57.42 Aligned_cols=80 Identities=21% Similarity=0.327 Sum_probs=57.9
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-C
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-P 165 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-~ 165 (305)
...+.+.++..++|.-.|.|..+..+.+ .++++|+|+|.++.+++.|++++... .+++.++++++.++. . .
T Consensus 13 l~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 13 LEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp HHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTT
T ss_pred HHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccC
Confidence 3356677888999999999999999985 46799999999999999998876643 568999999998743 2 3
Q ss_pred CCCeeEEEe
Q 042544 166 DNSFDAVYA 174 (305)
Q Consensus 166 ~~~fD~v~~ 174 (305)
-..+|.|+.
T Consensus 91 ~~~~dgiL~ 99 (310)
T PF01795_consen 91 INKVDGILF 99 (310)
T ss_dssp TS-EEEEEE
T ss_pred CCccCEEEE
Confidence 357999886
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0074 Score=53.08 Aligned_cols=125 Identities=22% Similarity=0.188 Sum_probs=80.7
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhc-----CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFS-----STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------ 163 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------ 163 (305)
.+++.|+.+|||+++..|.=+..+.+.. ...|++=|.++.-+........... ..+..+...|+..+|
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecccceecccccccc
Confidence 4678899999999999999888877531 2389999999988877766664433 234445555554433
Q ss_pred ---CCCCCeeEEEec------ccccccCChhhh----hhcCCCCC--cccHHHHHHHHHhCCceEEEeccCC
Q 042544 164 ---FPDNSFDAVYAI------EATCHAPDAAEI----EIGDGLPD--IRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 164 ---~~~~~fD~v~~~------~~l~~~~~~~~~----~~~~~~~~--~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
.....||-|++- ..+.+.++.-.. +-+.+++. ++.+.+..++||+||.++.++..++
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 122458988862 123332222111 11133333 3468899999999999999987654
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00088 Score=54.52 Aligned_cols=106 Identities=11% Similarity=0.167 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-----cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CC--CCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-----SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FP--DNS 168 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~--~~~ 168 (305)
++..|+|+|.-.|..+..+|.. ..++|+|+|+...... ++..+...+.++++++++|..+.. .. ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 3469999999999999888742 3589999999543332 122222234568999999997632 11 111
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+-++.+.=-+|..+.-. ..++....++++|+++++.+.
T Consensus 110 ~~~vlVilDs~H~~~hvl----------~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 110 PHPVLVILDSSHTHEHVL----------AELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp -SSEEEEESS----SSHH----------HHHHHHHHT--TT-EEEETSH
T ss_pred CCceEEEECCCccHHHHH----------HHHHHhCccCCCCCEEEEEec
Confidence 232222222222222211 147778899999999999763
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.02 Score=53.67 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=83.8
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc-----CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS-----STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP 163 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~ 163 (305)
..++...+.+.+..+|.|..||+|.+.....+.. ...++|.|+++.....|+.+.--.|....+....+|-..-|
T Consensus 175 ~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~ 254 (489)
T COG0286 175 SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNP 254 (489)
T ss_pred HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCC
Confidence 3455556666777899999999999888877542 26799999999999999998877776433456666655433
Q ss_pred C-----CCCCeeEEEeccccc---ccCCh-hhh----hhcCC-----CCC-cccHHHHHHHHHhCCceEEE
Q 042544 164 F-----PDNSFDAVYAIEATC---HAPDA-AEI----EIGDG-----LPD-IRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 164 ~-----~~~~fD~v~~~~~l~---~~~~~-~~~----~~~~~-----~~~-~~~l~~~~~~L~~gG~~~i~ 215 (305)
. ..+.||+|++.--+. +.... ... ....+ -.. ..++..+...|+|+|+.-|.
T Consensus 255 ~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 255 KHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 2 236799999865432 11111 000 00111 112 55789999999999866554
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0025 Score=55.30 Aligned_cols=79 Identities=27% Similarity=0.319 Sum_probs=63.2
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHH-------HHHHHHHhcCC-CCCeEEEEcCCCCCCC-C
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQIT-------RGKELNRFAGV-DKTCNFVKADFMKMPF-P 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~-------~a~~~~~~~~~-~~~~~~~~~d~~~~~~-~ 165 (305)
.+.+++|..|+|-=.|||.+....+.. |+.|+|.||+-.|+. ..+.++++.|. +.-+.+..+|...-|+ .
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~F-Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHF-GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhh-cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 456789999999999999999998887 999999999988886 23556666664 3346788899887654 3
Q ss_pred CCCeeEEEe
Q 042544 166 DNSFDAVYA 174 (305)
Q Consensus 166 ~~~fD~v~~ 174 (305)
...||+|+|
T Consensus 282 n~~fDaIvc 290 (421)
T KOG2671|consen 282 NLKFDAIVC 290 (421)
T ss_pred cceeeEEEe
Confidence 567999998
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.014 Score=50.12 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHH
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITR 138 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~ 138 (305)
..+||--|||.|.++..++.. +..+-|-+.|.-|+--
T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLIC 187 (369)
T ss_pred CceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHH
Confidence 568999999999999999975 6677777998888743
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.011 Score=50.79 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=65.6
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F 164 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~ 164 (305)
+...+.+.++...+|.--|.|..+..+.+.. .++++|+|.++.+++.|++++...+ +++.+++.++..+. .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc
Confidence 3446788888999999999999999999653 3789999999999999999887653 58999999887643 2
Q ss_pred CCCCeeEEEe
Q 042544 165 PDNSFDAVYA 174 (305)
Q Consensus 165 ~~~~fD~v~~ 174 (305)
.-+.+|-|+.
T Consensus 93 ~i~~vDGiL~ 102 (314)
T COG0275 93 GIGKVDGILL 102 (314)
T ss_pred CCCceeEEEE
Confidence 2357888875
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.005 Score=53.61 Aligned_cols=108 Identities=19% Similarity=0.287 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEE----EEcCCCCCCCCCCCeeEEE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNF----VKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~----~~~d~~~~~~~~~~fD~v~ 173 (305)
...+|||+|.|.|.-+..+-. .|. ..++.++.|+..-+......+.... ..... ++.|-..+|. ...|++|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp~-ad~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLPA-ADLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCCc-cceeehhh
Confidence 346799999998876655543 232 4667777887665554443322221 11222 2233223333 34577777
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
..+-+.+...+..+ ...++.++.++.|||.++|.+.
T Consensus 191 ~~~eLl~d~~ek~i--------~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 191 VLDELLPDGNEKPI--------QVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhccccCcchH--------HHHHHHHHHhccCCCeEEEEeC
Confidence 66655555544322 1258899999999999999874
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0067 Score=50.09 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=71.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHH----HHHHHHHHHhcCCCCCeEEEEcCCCCCC---CC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQ----ITRGKELNRFAGVDKTCNFVKADFMKMP---FP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~----l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~ 165 (305)
.+.++|+.+||-+|+++|....++..- +..-|++++.|+.. +..|++ .+|+-.+.-|+.... ..
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIEDARHPAKYRML 223 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeeccCCCchheeee
Confidence 467889999999999999998888854 56789999998643 334433 356777888887511 11
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
-...|+|++ .++.+++..+ +.-+..-.||+||.++++..
T Consensus 224 VgmVDvIFa-----Dvaqpdq~Ri--------vaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 224 VGMVDVIFA-----DVAQPDQARI--------VALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred eeeEEEEec-----cCCCchhhhh--------hhhhhhhhhccCCeEEEEEe
Confidence 134566654 4555554432 35567788999999999753
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.015 Score=43.19 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA 146 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 146 (305)
.+.+|+|||.+.|..++.++......|+++++++...+..++.++..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 57899999999999999999765679999999999999998876654
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.043 Score=46.20 Aligned_cols=105 Identities=12% Similarity=0.006 Sum_probs=65.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHH----HHHhcCCCCCeEEEEcCCCCC---CCCCCC-eeE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKE----LNRFAGVDKTCNFVKADFMKM---PFPDNS-FDA 171 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~----~~~~~~~~~~~~~~~~d~~~~---~~~~~~-fD~ 171 (305)
...+||++|+|+|..+..++...+..|+-.|+.......... ..+.......+.+...+.... .+-... +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 356799999999987777776568899999986544432211 111111222344444333331 111223 999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+++.++.+-..... .+.-++..|..+|.+++.
T Consensus 166 ilasDvvy~~~~~e~-----------Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 166 ILASDVVYEEESFEG-----------LVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred EEEeeeeecCCcchh-----------HHHHHHHHHhcCCeEEEE
Confidence 999999877666554 477788888888844443
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.012 Score=52.97 Aligned_cols=105 Identities=16% Similarity=0.086 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCC-CeEEEEcCCCCCC-CCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDK-TCNFVKADFMKMP-FPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~-~~~~~fD~v~~~ 175 (305)
.+.+|||.=+|+|.=++.++.. + ..+|+.-|+|+..++..+++++..++.. ++++.+.|+..+- .....||+|=.-
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3568999999999999988843 3 3699999999999999999999998876 6889999987632 246789999321
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
-+..+ ..+++.+.+.++.||++.++..+.
T Consensus 129 ----PfGSp-----------~pfldsA~~~v~~gGll~vTaTD~ 157 (377)
T PF02005_consen 129 ----PFGSP-----------APFLDSALQAVKDGGLLCVTATDT 157 (377)
T ss_dssp -----SS-------------HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred ----CCCCc-----------cHhHHHHHHHhhcCCEEEEecccc
Confidence 11111 227999999999999999986543
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.053 Score=50.81 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=66.1
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-----------CC--
Q 042544 98 LKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-----------MP-- 163 (305)
Q Consensus 98 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-----------~~-- 163 (305)
..++.+||=+|||. |..+...++..+++|+++|.++..++.+++. | .+++..|..+ +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchh
Confidence 45789999999994 6666677766688999999999999888763 2 2222222111 00
Q ss_pred --------CCC--CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 164 --------FPD--NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 164 --------~~~--~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+.+ ..+|+|+..-....-+.+.. ..+++.+.+||||.++....
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~l-----------it~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKL-----------ITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcch-----------HHHHHHHhcCCCCEEEEEcc
Confidence 011 35899987654433222321 25899999999998776543
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.017 Score=47.01 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=45.6
Q ss_pred CccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-h--cCCeEEEEcCCHHHHHHHHHHHH
Q 042544 68 ESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-F--SSTSVTGLNNNEYQITRGKELNR 144 (305)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~--~~~~v~gvD~s~~~l~~a~~~~~ 144 (305)
.-++..|.+...+++-+.+-.+..+. .+.-..+-++-|-+||.|+++.-+.- + .=..|+|-|+++.+++.|++++.
T Consensus 20 ~VL~sApG~p~FPVRLAsEi~qR~l~-~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 20 RVLYSAPGFPAFPVRLASEIFQRALH-YLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp TSS--BTTB----HHHHHHHHHHHHC-TSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred eEEecCCCCCCccHHHHHHHHHHHHH-hhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 33556677777776665554433222 23334556899999999998877762 2 12689999999999999998864
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.034 Score=45.81 Aligned_cols=82 Identities=12% Similarity=0.175 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhc-CCCCCeEEEEcCCCC--CC---CCCCCeeEE
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFA-GVDKTCNFVKADFMK--MP---FPDNSFDAV 172 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~--~~---~~~~~fD~v 172 (305)
++.++||||.|.-..--.+. +..+.+.+|.|+++..++.|+..+... ++...+++....-.+ ++ -.++.||++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 56789999988543322232 223789999999999999999988776 555556655432222 11 125789999
Q ss_pred Eeccccccc
Q 042544 173 YAIEATCHA 181 (305)
Q Consensus 173 ~~~~~l~~~ 181 (305)
+|+-.+|.-
T Consensus 158 lCNPPFh~s 166 (292)
T COG3129 158 LCNPPFHDS 166 (292)
T ss_pred ecCCCcchh
Confidence 998777643
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.19 Score=41.97 Aligned_cols=111 Identities=9% Similarity=0.045 Sum_probs=72.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-h----cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC-CCCCCee
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-F----SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP-FPDNSFD 170 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~fD 170 (305)
+..+.+.+|+|+|+..-+..+.. . ...+++.+|+|...+...-+.+......-.+.-+++|.+. +. .+..+=-
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 34467999999999987777763 2 1268999999999997655544443333345667777764 21 2222222
Q ss_pred -EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 171 -AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 171 -~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.++....+..+...+... ++..+...|+||-++++...
T Consensus 156 l~~flGStlGN~tp~e~~~---------Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAV---------FLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEEecccccCCChHHHHH---------HHHHHHhcCCCcceEEEecc
Confidence 233344677665544432 79999999999999988654
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.075 Score=42.54 Aligned_cols=106 Identities=10% Similarity=0.150 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhh---cC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC------CCCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF---SS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF------PDNS 168 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~---~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~ 168 (305)
+...|+|+|.-.|..++.+|.. .+ .+|+++|++-..++.+-.. .+++.|++++..+... -.+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 4568999999999988888742 34 7999999987776543322 3579999999876321 0122
Q ss_pred eeEEE-ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCC
Q 042544 169 FDAVY-AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPD 222 (305)
Q Consensus 169 fD~v~-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~ 222 (305)
+--|+ |..+-|+....- ..++-+..+|..|-++++.+.++...
T Consensus 143 y~kIfvilDsdHs~~hvL-----------Ael~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 143 YPKIFVILDSDHSMEHVL-----------AELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred CCcEEEEecCCchHHHHH-----------HHHHHhhhHhhcCceEEEecccccCC
Confidence 33344 334444443321 13666778888888999888766543
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0094 Score=54.31 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-hcC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-FSS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v 172 (305)
.++.+|||.=|+||.-++.++. .++ .+|++-|.++..++..+++++..+..+.++..+.|+..+ +.....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 4567999999999999999984 343 589999999999999999998887777788888888752 2335789998
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
- +..- |.+ -.+++.+.+.++.||.+.+...+..
T Consensus 188 D-------LDPy-------Gs~-s~FLDsAvqav~~gGLL~vT~TD~a 220 (525)
T KOG1253|consen 188 D-------LDPY-------GSP-SPFLDSAVQAVRDGGLLCVTCTDMA 220 (525)
T ss_pred e-------cCCC-------CCc-cHHHHHHHHHhhcCCEEEEEecchH
Confidence 3 2111 111 1279999999999999999876554
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.027 Score=48.06 Aligned_cols=113 Identities=23% Similarity=0.244 Sum_probs=79.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCC---CCCeEEEEcCCCCC--CCCCCCeeE
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGV---DKTCNFVKADFMKM--PFPDNSFDA 171 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~d~~~~--~~~~~~fD~ 171 (305)
.....+||=||-|.|.+.+..+.++ -..+.-+|+....++..++....... .+++.+..+|...+ ....+.||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 4556799999999999999988543 35888999999999988887654421 45788999987653 244688999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|+.-..=.-.|...... -.+...+.+.||++|++++...
T Consensus 199 ii~dssdpvgpa~~lf~-------~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQ-------KPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEEecCCccchHHHHHH-------HHHHHHHHHhhCCCcEEEEecc
Confidence 98632211111111111 1257888999999999888653
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.013 Score=50.01 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCCChHHH-HHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLR-EIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~-~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.+..|+|+=+|-|+++. .+.......|+++|.+|..++..++.++..+...++..+.+|-.. +-++...|-|..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnL---- 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNL---- 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheee----
Confidence 45789999999999999 455655679999999999999999998888776677777887765 334677787764
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCc
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGF 211 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 211 (305)
.-+|..+. -.--+.++|+|.|-
T Consensus 269 GLlPSse~-----------~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 269 GLLPSSEQ-----------GWPTAIKALKPEGG 290 (351)
T ss_pred cccccccc-----------chHHHHHHhhhcCC
Confidence 34454433 35567788887554
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.044 Score=46.71 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCChHHHHHHhhc---------CCeEEEEcCCHHHHHHHHHHHHhc-----CCCCCeEEEEcCCCCCCCCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQFS---------STSVTGLNNNEYQITRGKELNRFA-----GVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~---------~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~ 166 (305)
..+|+|+|+|+|.++..+.+.. ..+++-||+|+.+.+.-++++... ....++.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 4699999999999999987531 258999999999988777776542 12223444 33443333
Q ss_pred CCeeEEEecccccccCCh
Q 042544 167 NSFDAVYAIEATCHAPDA 184 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~ 184 (305)
..-+|+++.++..+|-.
T Consensus 95 -~~~~iiaNE~~DAlP~~ 111 (252)
T PF02636_consen 95 -FPGFIIANELFDALPVD 111 (252)
T ss_dssp -CCEEEEEESSGGGS--E
T ss_pred -CCEEEEEeeehhcCcee
Confidence 24566666666665543
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.21 Score=41.77 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=49.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCC-C
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFP-D 166 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~-~ 166 (305)
.++.....+ .|++||=+|=+. ..++.++ ..+..+|+.+|+++..++..++.++..|++ ++.++.|+.. +|-. .
T Consensus 35 ~~~~~~gdL-~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~ 110 (243)
T PF01861_consen 35 ALMAERGDL-EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELR 110 (243)
T ss_dssp HHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTS
T ss_pred HHHHhcCcc-cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHh
Confidence 344444344 578999998543 3444444 345789999999999999999999988885 9999999986 3321 3
Q ss_pred CCeeEEEe
Q 042544 167 NSFDAVYA 174 (305)
Q Consensus 167 ~~fD~v~~ 174 (305)
++||++++
T Consensus 111 ~~fD~f~T 118 (243)
T PF01861_consen 111 GKFDVFFT 118 (243)
T ss_dssp S-BSEEEE
T ss_pred cCCCEEEe
Confidence 78999986
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.072 Score=47.51 Aligned_cols=100 Identities=21% Similarity=0.330 Sum_probs=60.3
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
....++.+||=+||| .|..+..+++..++ +|+++|.++..++.+++. |...-+.....++.+.....+.+|+|+
T Consensus 165 ~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 165 AGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEE
Confidence 344578899988876 44566666655566 699999999998887653 322111111112211111123478886
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
-.-. .+. .+....+.|++||.+++..
T Consensus 241 d~~G-----~~~------------~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EVSG-----HPS------------SINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ECCC-----CHH------------HHHHHHHHhhcCCEEEEEc
Confidence 4321 111 4778889999999988764
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.086 Score=46.88 Aligned_cols=84 Identities=14% Similarity=-0.013 Sum_probs=43.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh---------c--------CCeEEEEcCCHHHHHHHHH-------HHHhcCCCCCeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF---------S--------STSVTGLNNNEYQITRGKE-------LNRFAGVDKTCNF 154 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~---------~--------~~~v~gvD~s~~~l~~a~~-------~~~~~~~~~~~~~ 154 (305)
+...+|+|+||.+|..++.+... . ..+|+--|+-..--...-+ .... ...--+.-
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~g 93 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVSG 93 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEEe
Confidence 45579999999999988876531 0 1377777764322211111 1111 11111233
Q ss_pred EEcCCCCCCCCCCCeeEEEecccccccCC
Q 042544 155 VKADFMKMPFPDNSFDAVYAIEATCHAPD 183 (305)
Q Consensus 155 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 183 (305)
+.+.+..--+|+++.|++++..++|++..
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~ 122 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQ 122 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SS
T ss_pred cCchhhhccCCCCceEEEEEechhhhccc
Confidence 45666665588999999999999999865
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.071 Score=38.46 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNN 132 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s 132 (305)
+...-+|||||.|.+..-|... +..-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCccccccc
Confidence 4567999999999888887765 7888999973
|
; GO: 0008168 methyltransferase activity |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.15 Score=46.33 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=67.7
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC-CCC-C-CC-CCC
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD-FMK-M-PF-PDN 167 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d-~~~-~-~~-~~~ 167 (305)
....+.++.+||.+|||. |..+..+++..+. +|+++|.++..++.+++.. +. ..+.....+ +.. + .+ ...
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCC
Confidence 345677889999999987 8888888865565 6999999999998887642 11 111111111 110 0 11 223
Q ss_pred CeeEEEeccc-----------cccc----CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEA-----------TCHA----PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~-----------l~~~----~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+-.-. +.|. ++... .+.++.+.|+++|.+++..
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPD-----------ALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchH-----------HHHHHHHHhccCCEEEEEc
Confidence 5888876421 1111 12211 5888999999999988864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.081 Score=47.63 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=47.2
Q ss_pred CCeEEEEcCCCChHHHHHHhh----------------cCCeEEEEcCCHHHHHHHHHHHHh--------------cCCCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQF----------------SSTSVTGLNNNEYQITRGKELNRF--------------AGVDK 150 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~----------------~~~~v~gvD~s~~~l~~a~~~~~~--------------~~~~~ 150 (305)
..+|+|+|||+|..+..+... |..+|..-|+-..-....-+.+.. .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999877655311 235666666643222211111110 00000
Q ss_pred -CeEEEEcCCCCCCCCCCCeeEEEecccccccCC
Q 042544 151 -TCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD 183 (305)
Q Consensus 151 -~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 183 (305)
-+.-+.+.+..--||.++.+++++..++|++..
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceeccc
Confidence 011222444444488999999999999998864
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.044 Score=47.62 Aligned_cols=46 Identities=20% Similarity=0.064 Sum_probs=40.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHh
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF 145 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 145 (305)
.+|..|||.-||+|..+....+. +-+.+|+|++++.++.|++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 58899999999999888876664 88999999999999999998753
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.08 Score=46.84 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 84 SIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
.+++..+.+.......+-..|+|+|.|.|.++..++-..+..|.+||-|....+.|++
T Consensus 137 Ei~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 137 EIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3444445555544445667899999999999999994448999999999877776655
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.13 Score=45.60 Aligned_cols=104 Identities=15% Similarity=0.097 Sum_probs=75.4
Q ss_pred CCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecccc
Q 042544 101 GQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIEAT 178 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~~l 178 (305)
..+|||.=+|||.=++.++ +.+..+|+.-|+||..++.+++++..+.. .....+..|+..+-.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi---- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI---- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec----
Confidence 5799999999999999998 44334999999999999999999987732 2455566777653222 366888721
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
.-+..+ ..+++.+.+.++.+|++.++..+..
T Consensus 128 DPFGSP-----------aPFlDaA~~s~~~~G~l~vTATD~a 158 (380)
T COG1867 128 DPFGSP-----------APFLDAALRSVRRGGLLCVTATDTA 158 (380)
T ss_pred CCCCCC-----------chHHHHHHHHhhcCCEEEEEecccc
Confidence 011111 2379999999999999999765543
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.28 Score=43.28 Aligned_cols=97 Identities=24% Similarity=0.292 Sum_probs=63.4
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC------CCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM------PFPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~ 167 (305)
...+.++.+||..||| .|..+..+++..+.+|++++.++...+.+++ .+.. .+..+-... .....
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~~~ 231 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD----EVLNSLDDSPKDKKAAGLGG 231 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC----EEEcCCCcCHHHHHHHhcCC
Confidence 3456788899998876 4777788886668899999999998877754 2321 122111110 12345
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+..... . . .++++.+.|+++|.++...
T Consensus 232 ~~D~vid~~g~-----~-~-----------~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 232 GFDVIFDFVGT-----Q-P-----------TFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CceEEEECCCC-----H-H-----------HHHHHHHHhhcCCEEEEEC
Confidence 68888743211 1 1 4788999999999988753
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.057 Score=46.69 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=49.1
Q ss_pred eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC--CCCeeEEEecc
Q 042544 103 KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP--DNSFDAVYAIE 176 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~v~~~~ 176 (305)
+|+|+-||.|.++..+.+.....+.++|+++..++..+.+... .++++|+.++... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCC
Confidence 6999999999998888764234577899999999887776421 2566777775422 24689999754
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.053 Score=45.04 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
.+|..|||.-||+|..+....+. +-+.+|+|+++...+.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence 57899999999999888877664 8899999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.076 Score=44.47 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=41.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA 146 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 146 (305)
.+|..|||.-||+|..+....+. +.+.+|+|+++...+.+.+++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 57889999999999888877664 889999999999999999887653
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.18 Score=46.64 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=67.6
Q ss_pred CeEEEEcCCCChHHHHHHh---h--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 102 QKVLDVGCGIGGPLREIAQ---F--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~---~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
..|+=+|+|.|-+.....+ . -..++++++-+|.++-..+. ....+.+.+++++..|+..++.|..+.|++++-
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 4678899999976655432 1 24689999999988876655 333345678999999999988666788988753
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCce
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFE 212 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~ 212 (305)
.+..+.|.+.- ...+..+.+.|||.|+.
T Consensus 447 LLGSFGDNELS--------PECLDG~q~fLkpdgIs 474 (649)
T KOG0822|consen 447 LLGSFGDNELS--------PECLDGAQKFLKPDGIS 474 (649)
T ss_pred hhccccCccCC--------HHHHHHHHhhcCCCceE
Confidence 33333332210 11466666777777644
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.2 Score=44.33 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=40.4
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh-----c----CCeEEEEcCCHHHHHHHHHHHHhc
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF-----S----STSVTGLNNNEYQITRGKELNRFA 146 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~----~~~v~gvD~s~~~l~~a~~~~~~~ 146 (305)
.++.+....++|+|.|+|.++..+.+. | ..++.-|++|+...+.=++.++..
T Consensus 72 ~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 72 ELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 344555678999999999999988743 2 479999999999987766666543
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.035 Score=45.65 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCChHHHHHHhhc------C----CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-------
Q 042544 101 GQKVLDVGCGIGGPLREIAQFS------S----TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------- 163 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~------~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------- 163 (305)
-.+++|+++..|.|+..+.+.. . ..+++||+.+-. .+ +.+..+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PI-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------cc-CceEEeecccCCHhHHHHHHH
Confidence 3689999999999999998531 1 139999996532 12 35778889988632
Q ss_pred -CCCCCeeEEEeccc-----ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 164 -FPDNSFDAVYAIEA-----TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 164 -~~~~~fD~v~~~~~-----l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|..+..|+|+|-++ +|.+.+--+.++ -+..+.-...+|+|||.++-.
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qL-----llaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQL-----LLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHH-----HHHHHHHHhheecCCCeeehh
Confidence 55568899999764 333332211110 012355556789999988764
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.45 Score=41.46 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=65.2
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-C-CCC------CCC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-D-FMK------MPF 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d-~~~------~~~ 164 (305)
...+++|.+||=+|+|+ |..+...|+. ...+|+.+|+++..++.|++. |.. .+..... + ... --+
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~----Ga~-~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF----GAT-VTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh----CCe-EEeeccccccHHHHHHHHHhhc
Confidence 56788999999999995 5556556643 347999999999999999883 322 1111111 1 010 012
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+|+.+.+..++- .++.....+++||.+++..
T Consensus 239 g~~~~d~~~dCsG~~~-----------------~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGAEV-----------------TIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred cccCCCeEEEccCchH-----------------HHHHHHHHhccCCEEEEec
Confidence 2345788776543321 5777889999999977764
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.17 Score=47.46 Aligned_cols=96 Identities=20% Similarity=0.288 Sum_probs=62.0
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-----------C--C-
Q 042544 99 KSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-----------M--P- 163 (305)
Q Consensus 99 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-----------~--~- 163 (305)
.++.+||=+|||. |..+..++...++.|+++|.++..++.++.. | .+++..|..+ + +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G----a~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G----AEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccccceeecCHHH
Confidence 3568999999994 4566666655688999999999987777652 2 2333333211 0 0
Q ss_pred -------CC--CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 164 -------FP--DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 164 -------~~--~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
++ -..+|+|+..-.+..-+.+.. ..+++.+.+|||+.++
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~L-----------it~emv~~MKpGsvIV 281 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKL-----------ITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCee-----------ehHHHHhhCCCCCEEE
Confidence 11 145898877655444444422 5788899999998755
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.031 Score=43.42 Aligned_cols=107 Identities=21% Similarity=0.185 Sum_probs=59.6
Q ss_pred CCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCe-EEEEcCCCC-CCCCCCCeeEEEeccc
Q 042544 101 GQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTC-NFVKADFMK-MPFPDNSFDAVYAIEA 177 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~~~~~d~~~-~~~~~~~fD~v~~~~~ 177 (305)
+++++=+|+..= |...++ .+..++|..+|.++--++. . ..+++ .+...|+.. +.--.++||.+.|..+
T Consensus 2 ~~~g~V~GS~~P-wvEv~aL~~GA~~iltveyn~L~i~~--~------~~dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQP-WVEVMALQHGAAKILTVEYNKLEIQE--E------FRDRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCc-hhhHHHHHcCCceEEEEeecccccCc--c------cccccccccHHHHHHHHHHhhccchhhheech
Confidence 467777887743 333334 4445678888875422211 0 01111 111222221 1112477999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++|..-...-.-....-.++.+.++.++|||||.+++..
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 988753321111111223456888999999999999976
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.22 Score=45.40 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=65.3
Q ss_pred CCeEEEEcCCCCh--HHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCC--CCCC-CCCeeEEE
Q 042544 101 GQKVLDVGCGIGG--PLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMK--MPFP-DNSFDAVY 173 (305)
Q Consensus 101 ~~~vLDiGcG~G~--~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~--~~~~-~~~fD~v~ 173 (305)
...++|+|.|.|. ++.... ....-.++.||.|..|+.......+.. -..+-.++.. -+.. +|.. .+.||+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~-~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDG-SHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcCh-hhcCchhccccchhcccCCCCcccceeeEE
Confidence 4578888877654 444444 333568999999999999887766541 1101111111 1111 3433 45599999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHH-HHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRK-CLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~~gG~~~i~~ 216 (305)
+.+.++++...... +...++ .+...++||++++.+
T Consensus 280 ~ah~l~~~~s~~~R--------~~v~~s~~r~~~r~g~~lViIe 315 (491)
T KOG2539|consen 280 CAHKLHELGSKFSR--------LDVPESLWRKTDRSGYFLVIIE 315 (491)
T ss_pred eeeeeeccCCchhh--------hhhhHHHHHhccCCCceEEEEe
Confidence 99999998877422 112333 345567788888765
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.74 Score=40.81 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=60.3
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
...+.++.+||=.|+| .|..+..+++..+++|++++.++.-++.+++. |.. .++ |..+. ..+.+|+++
T Consensus 160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----Ga~---~vi--~~~~~--~~~~~d~~i 228 (329)
T TIGR02822 160 RASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----GAA---SAG--GAYDT--PPEPLDAAI 228 (329)
T ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----CCc---eec--ccccc--CcccceEEE
Confidence 3567789999999975 34455566655688999999999888777663 332 111 11111 123578665
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..... .. .+....+.|+++|.+++.-
T Consensus 229 ~~~~~-----~~------------~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPA-----GG------------LVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCc-----HH------------HHHHHHHhhCCCcEEEEEe
Confidence 33211 11 4778889999999988754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.012 Score=42.55 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=27.5
Q ss_pred CeeEEEeccccccc--C--ChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 168 SFDAVYAIEATCHA--P--DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 168 ~fD~v~~~~~l~~~--~--~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.||+|+|..+..++ . |... ..+++.+.+.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl---------~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGL---------KRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHH---------HHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHH---------HHHHHHHHHhhCCCCEEEEe
Confidence 48999998874433 2 2222 22799999999999999994
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.27 Score=41.67 Aligned_cols=96 Identities=22% Similarity=0.258 Sum_probs=60.5
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCCCCee
Q 042544 97 GLKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPDNSFD 170 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD 170 (305)
.+.++.+||-.|+|+ |..+..+++..+.+|++++.++...+.+++. +.. .++...-... ....+.+|
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD---HVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc---eeccCCcCCHHHHHHHhcCCCCC
Confidence 346789999999985 6666677765689999999998877766442 211 1111110000 01235689
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++.... ... .+..+.+.|+++|.++...
T Consensus 204 ~vi~~~~-----~~~------------~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVG-----GPE------------TLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCC-----CHH------------HHHHHHHhcccCCEEEEEc
Confidence 8875321 111 3777889999999988754
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.063 Score=50.37 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCH
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNE 133 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~ 133 (305)
+.++..|||+||.+|.|....++. .+.-|+|+|+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 457889999999999999888854 468999999965
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=93.51 E-value=1.4 Score=37.81 Aligned_cols=104 Identities=12% Similarity=-0.026 Sum_probs=67.8
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEEcCCCC-C-------CCCCCCeeE
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV--DKTCNFVKADFMK-M-------PFPDNSFDA 171 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~-~-------~~~~~~fD~ 171 (305)
..|+.+|||-=.-...+....+.+++=+|. |.+++.-++.+...+. ..+.+++..|+.. + .+..+..-+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 469999999755555553222466666776 5566666666665432 3567889999862 1 122234457
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++-+++.+++...... +++.+.+...||+.+++.
T Consensus 162 ~i~EGvl~YL~~~~v~~---------ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDA---------LLAFIAELSAPGSRLAFD 196 (260)
T ss_pred eeecchhhcCCHHHHHH---------HHHHHHHhCCCCcEEEEE
Confidence 88888999998876543 577777776688777764
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.49 Score=42.76 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=37.9
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHh
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF 145 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 145 (305)
.+.+.++.+||-|.+|.......+... ..+|++||+||.++...+-+.+.
T Consensus 30 aL~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 30 ALNIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HhCCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHHH
Confidence 578899999999977754444444454 58999999999999877665543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.2 Score=39.90 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC------CCCCC-CC
Q 042544 98 LKSGQKVLDVGCGI-GGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK------MPFPD-NS 168 (305)
Q Consensus 98 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~-~~ 168 (305)
..++.+|+=+|||+ |.++..+++. ...+|+.+|.++.-++.|++.... +.+.....+ ..... ..
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCC
Confidence 34455999999995 6666666654 347999999999999999885321 122211110 01111 25
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|+++-.-. .+ .++..+.++++++|.+++.-.
T Consensus 239 ~D~vie~~G-----~~------------~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 239 ADVVIEAVG-----SP------------PALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CCEEEECCC-----CH------------HHHHHHHHHhcCCCEEEEEec
Confidence 898874432 11 158899999999999988653
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.46 Score=42.89 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=60.3
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-CCCCCCee
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-PFPDNSFD 170 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD 170 (305)
...+.++.+||=.|+| .|..+..+++..++ +|+++|.++..++.+++. |...-+.....|..+ + ....+.+|
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GATATVNAGDPNAVEQVRELTGGGVD 261 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCceEeCCCchhHHHHHHHHhCCCCC
Confidence 4567788899988876 34555666655577 699999999988877652 321111111111100 0 01123578
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+-.- .... .+....+.|+++|.+++..
T Consensus 262 ~vid~~-----G~~~------------~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 262 YAFEMA-----GSVP------------ALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEEECC-----CChH------------HHHHHHHHHhcCCEEEEEc
Confidence 887431 1111 4777889999999988754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.78 Score=40.60 Aligned_cols=93 Identities=17% Similarity=0.310 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC---CCCCCCCCCCeeEEEe
Q 042544 100 SGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD---FMKMPFPDNSFDAVYA 174 (305)
Q Consensus 100 ~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~fD~v~~ 174 (305)
++.+||-.|||. |..+..+++..+. ++++++.++...+.+++. +.. .++..+ +.......+.+|+++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence 788999988875 6666777765576 899999998888765542 221 122111 1111111234888875
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.... . . .++.+.+.|+++|.++...
T Consensus 238 ~~g~-----~-~-----------~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 238 ASGA-----P-A-----------ALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCCC-----H-H-----------HHHHHHHHHhcCCEEEEEe
Confidence 4221 1 1 3778899999999987643
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.71 Score=41.31 Aligned_cols=101 Identities=16% Similarity=0.220 Sum_probs=63.1
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCC-C-CCCCCCe
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMK-M-PFPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~f 169 (305)
...+.++.+||=.|+ |.|..+..+++..+++|++++.++...+.+++. .|...-+..... +... + ....+.+
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 356788999999997 377788888876688999999998887766532 232211111101 1111 0 0112358
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|+-.-. .. .+..+.+.|+++|.+++.-
T Consensus 230 D~v~d~vG-----~~-------------~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYFDNVG-----GD-------------MLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEEECCC-----HH-------------HHHHHHHHhccCCEEEEEC
Confidence 88874311 11 4778899999999988653
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.55 Score=42.02 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=57.4
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcC---CHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 98 LKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNN---NEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 98 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~---s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
..++.+||=+|+| .|..+..+++..+++|++++. ++.-++.+++ .|.. .+.....+..+.. ..+.+|+|+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~-~~~~~d~vi 243 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVK-LVGEFDLII 243 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhh-hcCCCCEEE
Confidence 4578899999986 355666677666789999987 6777666654 2321 1111011111000 123578877
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
-.-. ... .+.+..+.|+++|.+++..
T Consensus 244 d~~g-----~~~------------~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 244 EATG-----VPP------------LAFEALPALAPNGVVILFG 269 (355)
T ss_pred ECcC-----CHH------------HHHHHHHHccCCcEEEEEe
Confidence 5321 111 3778889999999887654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.2 Score=42.15 Aligned_cols=116 Identities=20% Similarity=0.251 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhhc-----CCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCC-CCC-CCCCeeE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFS-----STSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMK-MPF-PDNSFDA 171 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~-~~~-~~~~fD~ 171 (305)
++..|.|..||+|.+........ ...++|.+..+.+...+..+....+.. +......+|-.. ..+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 56789999999999987654321 246999999999999998875444432 122333344322 222 2356898
Q ss_pred EEecccccc------cCC---hhhhhhcCCC-----CCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCH------APD---AAEIEIGDGL-----PDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~------~~~---~~~~~~~~~~-----~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|++.-.+.- .+. ....-....+ ....++..+...|++||...+.
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 887543221 110 0000000001 1344788888999999976554
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.49 Score=46.32 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCCChHHHHHHh-h-------c-----CCeEEEEcCCH---HHHHHH-----------HHHHHhc-----C
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-F-------S-----STSVTGLNNNE---YQITRG-----------KELNRFA-----G 147 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~-------~-----~~~v~gvD~s~---~~l~~a-----------~~~~~~~-----~ 147 (305)
+.-+|||+|-|+|.......+ . + ..+++++|..| ..+..+ ++..... |
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999996665542 1 2 24788998633 333322 2222111 1
Q ss_pred C------CC--CeEEEEcCCCC-CCCCCCCeeEEEeccc-ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 148 V------DK--TCNFVKADFMK-MPFPDNSFDAVYAIEA-TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 148 ~------~~--~~~~~~~d~~~-~~~~~~~fD~v~~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
+ .. .+++..+|+.+ ++--+..+|+++.-.. -..-|+. ....++..+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~---------W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDM---------WSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhh---------ccHHHHHHHHHHhCCCCEEE
Confidence 1 01 34567788765 2211356899986432 1122221 12235777788877777765
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.77 Score=41.16 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=60.1
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-C-CCCCCe
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-P-FPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~f 169 (305)
...+.++.+||=.||| .|..+..+++..+. +|+++|.++..++.+++ .|...-+.....+..+ + . .....+
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~ 246 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGA 246 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCC
Confidence 3466789999999875 34556666665576 59999999998887754 2321101111111100 0 0 112357
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|+-.- .... .+....+.|+++|.+++.-
T Consensus 247 d~vid~~-----g~~~------------~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 247 DVVIDAV-----GRPE------------TYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CEEEECC-----CCHH------------HHHHHHHHhccCCEEEEEC
Confidence 8886421 1111 4777889999999988754
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.16 Score=43.34 Aligned_cols=39 Identities=28% Similarity=0.274 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHH
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQIT 137 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~ 137 (305)
..+++|||+|||+|.............++..|.|...++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 367899999999999888887553478899999887773
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.13 Score=46.33 Aligned_cols=63 Identities=24% Similarity=0.178 Sum_probs=53.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCC-eEEEEcCCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKT-CNFVKADFMK 161 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~ 161 (305)
.++|..|.|+-||.|-++..++.. +++|++-|.++++++..+.++....+.+. ++.+..|+..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 467889999999999999999875 79999999999999999998876666544 7777777765
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=91.13 E-value=1.7 Score=35.65 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=56.9
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCCh--HHHHHH---hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCC-C-C
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGG--PLREIA---QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM-K-M 162 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~--~~~~l~---~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~-~-~ 162 (305)
+++..+..-.....++++.|+.|. .++.|+ ++.+++++.|-+.+..+...++.+...+..+.++|+.++.. + +
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~ 110 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM 110 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH
Confidence 455544444456789999766442 344444 45689999999998888888888877777666799998853 2 3
Q ss_pred CCCCCCeeEEEe
Q 042544 163 PFPDNSFDAVYA 174 (305)
Q Consensus 163 ~~~~~~fD~v~~ 174 (305)
+. -...|+++.
T Consensus 111 ~~-~~~iDF~vV 121 (218)
T PF07279_consen 111 PG-LKGIDFVVV 121 (218)
T ss_pred hh-ccCCCEEEE
Confidence 21 234787764
|
The function of this family is unknown. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=91.08 E-value=1.3 Score=39.03 Aligned_cols=101 Identities=17% Similarity=0.290 Sum_probs=63.1
Q ss_pred HHcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCC-C-CCCCCC
Q 042544 94 LQLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMK-M-PFPDNS 168 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~ 168 (305)
....+.++.+||=.|+ |.|..+..+++..+.+|++++.++...+.+++ .|...-+..... +... . ....+.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCC
Confidence 3456788999998884 47778888887668899999999888777654 233210111110 1111 0 011245
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+|+-.- ... .+....++|+++|.++...
T Consensus 208 vdvv~d~~-----G~~-------------~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 208 YDCYFDNV-----GGE-------------FSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred eEEEEECC-----CHH-------------HHHHHHHHhCcCcEEEEec
Confidence 88887421 111 3677889999999988753
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=90.88 E-value=1.1 Score=39.08 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=65.4
Q ss_pred CCeEEEEcCCCChHHHHHHhhc---------------------CCeEEEEcCCH--HHHHHHHHHHHhc-----------
Q 042544 101 GQKVLDVGCGIGGPLREIAQFS---------------------STSVTGLNNNE--YQITRGKELNRFA----------- 146 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~---------------------~~~v~gvD~s~--~~l~~a~~~~~~~----------- 146 (305)
..+||-||.|-|.-...++... ...|+.||+.+ ..+......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999988666665321 13899999975 4444444433322
Q ss_pred -CC----CCCeEEEEcCCCCCCCCC-------CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 147 -GV----DKTCNFVKADFMKMPFPD-------NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 147 -~~----~~~~~~~~~d~~~~~~~~-------~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
.. .-++.|.+.|+..+..++ ...++|...+.+..+-....-+ ..+++..+...++||-.++|
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~k------Tt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISK------TTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHH------HHHHHHHHHhhcCCCcEEEE
Confidence 00 114678888887654321 2346665555443221110000 12368899999999999999
Q ss_pred Ee
Q 042544 215 WE 216 (305)
Q Consensus 215 ~~ 216 (305)
.+
T Consensus 241 vD 242 (315)
T PF11312_consen 241 VD 242 (315)
T ss_pred Ec
Confidence 87
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.56 Score=35.08 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=56.2
Q ss_pred CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----C-CCCCCeeEEEecccccccCC
Q 042544 110 GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----P-FPDNSFDAVYAIEATCHAPD 183 (305)
Q Consensus 110 G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~v~~~~~l~~~~~ 183 (305)
|.|..+..+++..+++|+++|.++.-++.+++. |. -.++..+-.++ . .+...+|+|+-+- ..
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----GS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESS-----SS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEec-----Cc
Confidence 457888899976689999999999998888763 31 12222222211 1 2334799987542 21
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 184 AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.. .++....+|+++|.+++..
T Consensus 69 ~~------------~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 69 GD------------TLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp HH------------HHHHHHHHEEEEEEEEEES
T ss_pred HH------------HHHHHHHHhccCCEEEEEE
Confidence 22 5889999999999998865
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.7 Score=38.74 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=36.6
Q ss_pred cCCCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 96 LGLKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
..+.++.+||=+|||. |..+..+++..+.+|+++|.++..++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 5677899999999964 566666776567899999999998887755
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=90.20 E-value=1 Score=39.50 Aligned_cols=97 Identities=16% Similarity=0.241 Sum_probs=62.1
Q ss_pred HHcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCC
Q 042544 94 LQLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPD 166 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~ 166 (305)
....+.++.+||=.|+ |.|..+..+++..+.+|++++.++...+.+++ .|.. .++...-.++ ....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAAP 209 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHCC
Confidence 3456778899998874 56667777886668899999999988777655 2332 1221111110 0112
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..+|+|+-.-. .. .+....+.|+++|.++..
T Consensus 210 ~gvd~vld~~g-----~~-------------~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 210 DGIDCYFDNVG-----GE-------------FSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCcEEEEECCC-----HH-------------HHHHHHHhhccCCEEEEE
Confidence 45888874311 11 478889999999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=90.19 E-value=1.3 Score=39.18 Aligned_cols=101 Identities=24% Similarity=0.304 Sum_probs=59.2
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-CCCCCee
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-FPDNSFD 170 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~fD 170 (305)
.+.+.++.+||=+|+| .|..+..+++..+++ |++++.++..++.+++. |...-+.....+...+ . .....+|
T Consensus 158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 158 RVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 4566788999999875 334555566556777 99999999888777542 3211011111110000 0 1123588
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+-.-. ... .+....+.|+++|.+++..
T Consensus 234 ~vid~~g-----~~~------------~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 234 VAIECSG-----NTA------------ARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EEEECCC-----CHH------------HHHHHHHHhhcCCEEEEEc
Confidence 8874311 111 3567789999999988754
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=89.92 E-value=2.2 Score=37.56 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=60.6
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCeeEEE
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSFDAVY 173 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~ 173 (305)
..+.++.+||-.||| .|..+..+++..+.+|++++.++...+.+++. +.. .++...-.... -..+.+|+++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD---EVVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc---EEeccCCcchHHhccCCCCEEE
Confidence 567788899999987 66666667766688999999999888776432 221 11111110000 0123588887
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.... ... .+..+.+.|+++|.++...
T Consensus 231 ~~~~-----~~~------------~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVV-----SGA------------AAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECCC-----cHH------------HHHHHHHhcccCCEEEEEC
Confidence 5321 111 3777889999999887654
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.2 Score=34.65 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=31.9
Q ss_pred EEcCCCC--hHHHHHH---hhcCCeEEEEcCCHHHHHHHHHH--HHhcCCCCCeEEEEcCC
Q 042544 106 DVGCGIG--GPLREIA---QFSSTSVTGLNNNEYQITRGKEL--NRFAGVDKTCNFVKADF 159 (305)
Q Consensus 106 DiGcG~G--~~~~~l~---~~~~~~v~gvD~s~~~l~~a~~~--~~~~~~~~~~~~~~~d~ 159 (305)
|||+..| ..+..+. ..+..+|+++|++|..++..+++ +........+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 5555443 22578999999999999988888 44433323466665544
|
; PDB: 2PY6_A. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.54 E-value=1.8 Score=38.56 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=56.3
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 97 GLKSGQKVLDVGCG-IGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 97 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
.+.++.+||=+||| .|..+..+++. . +.+|+++|.++.-++.+++ .+. . ....+ +. .+..+|+|+
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~~~---~~-~~~g~d~vi 227 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLIDD---IP-EDLAVDHAF 227 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eehhh---hh-hccCCcEEE
Confidence 45678999999986 33344555543 2 4689999999988887754 111 1 11111 11 112478887
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
-.-. .-..+ ..+....++|+++|.+++.-
T Consensus 228 D~~G--~~~~~------------~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVG--GRGSQ------------SAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCC--CCccH------------HHHHHHHHhCcCCcEEEEEe
Confidence 3211 00011 14788899999999988754
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.52 E-value=4.3 Score=35.65 Aligned_cols=99 Identities=25% Similarity=0.342 Sum_probs=61.1
Q ss_pred HHcCCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCC
Q 042544 94 LQLGLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDN 167 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~ 167 (305)
....+.++.+||-+|+| .|..+..+++..+.+ +++++.++...+.+++. +.. .++..+-... .....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCC
Confidence 34567788999999865 355666666555766 89999998887776442 221 2222111110 11235
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+++.... .. . .+.++.+.|+++|.++...
T Consensus 226 ~vd~v~~~~~-----~~-~-----------~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATG-----VP-K-----------TLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCC-----Ch-H-----------HHHHHHHHHhcCCEEEEEe
Confidence 6898875321 11 1 4778899999999887643
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.59 Score=39.59 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCChHHHHHHhh------cCCeEEEEcCC--------------------------HHHHHHHHHHHHhcCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQF------SSTSVTGLNNN--------------------------EYQITRGKELNRFAGV 148 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s--------------------------~~~l~~a~~~~~~~~~ 148 (305)
..-|+|+||=.|..+..++.. .+-+++++|-= ...++..++++...++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 358999999999877665421 24578888741 1234455555555553
Q ss_pred -CCCeEEEEcCCCC-CC-CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 149 -DKTCNFVKADFMK-MP-FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 149 -~~~~~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+++.++.+.+.+ +| .+.+.+-++..- ..+-++.. ..|+.++..|.|||++++.+
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD---~DlYesT~----------~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLD---CDLYESTK----------DALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE------SHHHHH----------HHHHHHGGGEEEEEEEEESS
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEe---ccchHHHH----------HHHHHHHhhcCCCeEEEEeC
Confidence 4579999999865 44 223333222211 01111111 25888888899999998854
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.6 Score=38.67 Aligned_cols=96 Identities=11% Similarity=0.175 Sum_probs=59.6
Q ss_pred cCCCCC--CeEEEEcC--CCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCC
Q 042544 96 LGLKSG--QKVLDVGC--GIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFP 165 (305)
Q Consensus 96 ~~~~~~--~~vLDiGc--G~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 165 (305)
..+.++ .+||=.|+ |.|..+..+++..++ +|++++.++...+.+++. .|.. .++..+-.++ ...
T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~---~vi~~~~~~~~~~i~~~~ 221 (345)
T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD---AAINYKTDNVAERLRELC 221 (345)
T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc---EEEECCCCCHHHHHHHHC
Confidence 345555 79998886 577788888866687 899999998877766552 2332 1221111111 011
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
...+|+|+..-. .. .+.+..+.|+++|.++..
T Consensus 222 ~~gvd~vid~~g-----~~-------------~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 222 PEGVDVYFDNVG-----GE-------------ISDTVISQMNENSHIILC 253 (345)
T ss_pred CCCceEEEECCC-----cH-------------HHHHHHHHhccCCEEEEE
Confidence 245888874311 11 367788999999998864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.07 E-value=1.5 Score=39.66 Aligned_cols=98 Identities=18% Similarity=0.385 Sum_probs=59.6
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC-----CCC-C-CCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD-----FMK-M-PFP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d-----~~~-~-~~~ 165 (305)
...+.++.+||=+||| .|..+..+++..++ +|+++|.++..++.+++ .|.. .++... ..+ + ...
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~~~ 265 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIREMT 265 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHHHh
Confidence 4567889999999876 34455556655577 69999999998888755 2322 122111 110 0 011
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
.+.+|+|+-.-. ... .+......++++ |.+++.-
T Consensus 266 ~~g~dvvid~~G-----~~~------------~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 266 GGGVDYSFECAG-----NVE------------VLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCCEEEECCC-----ChH------------HHHHHHHhhhcCCCEEEEEc
Confidence 225888874321 111 477788889997 8877653
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.7 Score=38.49 Aligned_cols=100 Identities=25% Similarity=0.350 Sum_probs=63.7
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-C-CCCCCe
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-P-FPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~f 169 (305)
...++++.+||=.|+ |-|.++..|++..+..++++--+++-.+.+++ .|.+.-+.+...|+.+ . . .....+
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 356778999999885 45668888887667688888888866665444 3433223333333322 1 1 122368
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|+..-. .. .+.+....|+++|.++..-
T Consensus 213 Dvv~D~vG-----~~-------------~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 213 DVVLDTVG-----GD-------------TFAASLAALAPGGRLVSIG 241 (326)
T ss_pred eEEEECCC-----HH-------------HHHHHHHHhccCCEEEEEe
Confidence 99974321 11 5778899999999988754
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=88.86 E-value=4.6 Score=34.45 Aligned_cols=96 Identities=18% Similarity=0.263 Sum_probs=59.2
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
...+.++.+||=.|||. |..+..+++..+.+ |++++.++...+.+++. |....+ .... .. ......+|+|
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~-~~~~~~~d~v 163 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AADT-AD-EIGGRGADVV 163 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hh-hhcCCCCCEE
Confidence 45667888999888764 55666677555777 99999999888766653 211111 1100 00 0123458888
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+..-.. .. .+....+.|+++|.++..
T Consensus 164 l~~~~~-----~~------------~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 164 IEASGS-----PS------------ALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEccCC-----hH------------HHHHHHHHhcCCcEEEEE
Confidence 743110 11 367788999999988764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.8 Score=37.88 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=53.5
Q ss_pred CCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 100 SGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 100 ~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
++.+||=+||| .|.++..+++..+++ |+++|.++..++.+.+. . ++ |..+. ....+|+|+-.-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~~~g~Dvvid~~G 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--PRRDYRAIYDASG 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--cCCCCCEEEECCC
Confidence 56788888876 455667777655765 66789888777655431 1 11 11110 1245888874321
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
... .+..+.+.|+++|.+++.-
T Consensus 210 -----~~~------------~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 210 -----DPS------------LIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred -----CHH------------HHHHHHHhhhcCcEEEEEe
Confidence 111 4788899999999988754
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=88.65 E-value=2.1 Score=37.98 Aligned_cols=100 Identities=16% Similarity=0.212 Sum_probs=62.6
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCC-C-CCCCCCe
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMK-M-PFPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~f 169 (305)
...+.++.+||=.|+ |.|..+..+++..+.+|++++.++...+.+++. .|...-+..... +..+ + ....+.+
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCCc
Confidence 456788999998886 466777778876689999999988887776552 232211111111 1111 0 0112468
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+|+-.- .. . .+....+.|+++|.++..
T Consensus 223 d~v~d~~-----g~--~-----------~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYFDNV-----GG--K-----------MLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEEECC-----CH--H-----------HHHHHHHHhccCcEEEEe
Confidence 8887431 11 1 477889999999998864
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=88.63 E-value=2 Score=36.69 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=42.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh------cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF------SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP 163 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~ 163 (305)
+.+...++|+|||.|.++..++.. ....++.||-...-. .+..++........++=+..|+.++.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 456779999999999999999853 246899999865333 23333333221124555666666643
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.24 E-value=4 Score=35.14 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=57.6
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc--CCCCCCCCCCCeeE
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKA--DFMKMPFPDNSFDA 171 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~fD~ 171 (305)
....++.+||=+|+| .|..+..+++..+.+ |+++|.++..++.+++. |...-+..... .+... .....+|+
T Consensus 116 ~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~-~~~~g~d~ 190 (280)
T TIGR03366 116 AGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATALAEPEVLAERQGGL-QNGRGVDV 190 (280)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcEecCchhhHHHHHHH-hCCCCCCE
Confidence 344578899999875 344555566555765 99999999888777653 32110110000 00001 11234788
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+-.- .... .+..+.+.|+++|.+++.-
T Consensus 191 vid~~-----G~~~------------~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFS-----GATA------------AVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEECC-----CChH------------HHHHHHHHhcCCCEEEEec
Confidence 76421 1111 4778899999999988754
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.16 E-value=3 Score=40.40 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=62.9
Q ss_pred eEEEEcCCCChHHHHHHh---h--cCCeEEEEcCCHHHHHHHHHHH-HhcCC-------CCCeEEEEcCCCCCCCCC---
Q 042544 103 KVLDVGCGIGGPLREIAQ---F--SSTSVTGLNNNEYQITRGKELN-RFAGV-------DKTCNFVKADFMKMPFPD--- 166 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~---~--~~~~v~gvD~s~~~l~~a~~~~-~~~~~-------~~~~~~~~~d~~~~~~~~--- 166 (305)
.|+=+|+|-|-+.....+ . ...+|++|+-++......+.+. ....+ ...|+++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999976655432 1 2368999999966443433332 11122 346999999999874331
Q ss_pred --------CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHh----CCc
Q 042544 167 --------NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQ----AGF 211 (305)
Q Consensus 167 --------~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~----gG~ 211 (305)
+.+|+|++ ..|..+.|.+.- ...|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELS--------PECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELS--------PECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehH-hhhcccccccCC--------HHHHHHHHHhhhhhcccccc
Confidence 36898886 334444443321 1258888888887 775
|
|
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=88.07 E-value=1.7 Score=37.35 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=40.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA 146 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 146 (305)
.+..+-+|.-||+|.......+++. .++|.+||+++..++..+-+++..
T Consensus 60 ~~g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 60 QLGIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred hcCCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHHHH
Confidence 4567889999999977777777776 589999999999998877766543
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.99 E-value=2.8 Score=37.02 Aligned_cols=101 Identities=24% Similarity=0.327 Sum_probs=62.2
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C--CCCCCCe
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M--PFPDNSF 169 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~~f 169 (305)
....+.++.+||-.|+|. |..+..+++..+.+|+++..++...+.+++. +...-+.....++.. + ..+...+
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCC
Confidence 345677889999998763 6677777766689999998888887766442 221101111111100 0 0123458
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+++.... ... .+.++.+.|+++|.++..
T Consensus 229 d~vld~~g-----~~~------------~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 229 DVVIDATG-----NPA------------SMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CEEEECCC-----CHH------------HHHHHHHHHhcCCEEEEE
Confidence 88875421 111 477889999999987754
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=87.97 E-value=0.77 Score=40.43 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=48.5
Q ss_pred eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCeeEEEecc
Q 042544 103 KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSFDAVYAIE 176 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~ 176 (305)
+++|+-||.|.+..-+.+..-..+.++|+++...+.-+.+.. ....+|+..+. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEecc
Confidence 799999999999999886522478899999998887777642 67888888764 443 489998744
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.49 E-value=0.66 Score=42.68 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-------CCCCCCeeE
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-------PFPDNSFDA 171 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~fD~ 171 (305)
.+..+|-+|-|.|.+...+. ..+...++++++.|.|++.|++......-. +..+...|..+. .-.+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence 45678889999999998887 556799999999999999998876433211 233444443321 124567998
Q ss_pred EEeccc---cccc--CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEA---TCHA--PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~---l~~~--~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+..--- .+-+ |.+..++ -.++..++..|.|-|.++|.-
T Consensus 374 l~~dvds~d~~g~~~pp~~fva-------~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVA-------QVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred EEEECCCCCcccCcCCchHHHH-------HHHHHHHhhccCccceEEEEE
Confidence 875210 1111 1222211 125788889999999998754
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.33 E-value=2 Score=37.41 Aligned_cols=97 Identities=20% Similarity=0.105 Sum_probs=65.7
Q ss_pred CeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc
Q 042544 102 QKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 102 ~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 180 (305)
.+|.=||.| -|..+..++--.++.|+-+|+|..-+.+..... ..+++..-.+...+.-.-...|+|+..-.+.-
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 466668888 567777777556899999999998887665543 23466665555443222245788886554444
Q ss_pred cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 181 APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
-..|.. ..+++.+.||||++++=
T Consensus 244 akaPkL-----------vt~e~vk~MkpGsVivD 266 (371)
T COG0686 244 AKAPKL-----------VTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCCcee-----------hhHHHHHhcCCCcEEEE
Confidence 444444 58899999999997653
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.14 E-value=1.6 Score=35.99 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=47.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
.+...++.-...-|.+||.|.|..++.+.+....++..+++++..+.-.+-..++. +.+..+.++|+..
T Consensus 41 KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 41 KIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLR 109 (326)
T ss_pred HHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEeccccce
Confidence 33334444456789999999999999998653467778888776666555544433 3357777777764
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.03 E-value=8.2 Score=34.17 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=61.0
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC-------CCCCC
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF-------MKMPF 164 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-------~~~~~ 164 (305)
....+.++.+||-.|+|. |..+..+++..+.+ |++++.++...+.+++. +...-+.....+. ... .
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~-~ 230 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAEL-L 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHH-h
Confidence 456678889999887764 56666677656776 99999888887766442 2211011111111 111 2
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+|+|+-...- .. .+....+.|+++|.++...
T Consensus 231 ~~~~~d~vld~~g~------~~-----------~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTGA------ES-----------CIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCCC------HH-----------HHHHHHHHhhcCCEEEEEc
Confidence 23458988753221 00 3777899999999887643
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.97 E-value=3 Score=35.43 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=60.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
..+.+++...|+|+-.|.|+-.+.++ +-.|++||-.+-.-.. - ..+.++-...|...+.......|-.+|-
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~ma~sL-----~---dtg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGPMAQSL-----M---DTGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhc-ceEEEEeccchhhhhh-----h---cccceeeeeccCcccccCCCCCceEEee
Confidence 35678999999999999999999976 7899999975533221 1 1235777777877654334567877764
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhC
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA 209 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g 209 (305)
.+ ..+.. +-..+..+|..|
T Consensus 278 mV----EkP~r-----------v~~li~~Wl~nG 296 (358)
T COG2933 278 MV----EKPAR-----------VAALIAKWLVNG 296 (358)
T ss_pred hh----cCcHH-----------HHHHHHHHHHcc
Confidence 32 33433 345566676654
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=86.75 E-value=2.7 Score=38.50 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
-+|.+|+=+|||. |......++..+++|+.+|+++..++.|+. .|. +.. +..+. . ..+|+|+..-.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~-v--~~aDVVI~atG 266 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGY----EVM--TMEEA-V--KEGDIFVTTTG 266 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCC----EEc--cHHHH-H--cCCCEEEECCC
Confidence 4688999999995 444444455558899999999988776654 222 221 11111 1 24688875421
Q ss_pred ccccCChhhhhhcCCCCCcccHHH-HHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRK-CLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~~gG~~~i~~ 216 (305)
... .+.. ..+.+++||+++..-
T Consensus 267 -----~~~------------~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 267 -----NKD------------IITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred -----CHH------------HHHHHHHhcCCCCcEEEEeC
Confidence 111 2444 478899999887654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=86.43 E-value=2.3 Score=34.17 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=51.2
Q ss_pred CeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCC---------CCCCCe
Q 042544 102 QKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGV--DKTCNFVKADFMKMP---------FPDNSF 169 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~---------~~~~~f 169 (305)
..|+.+|||-=.....+... ++.+++-+|. |.+++.-++.+...+. +.+.+++..|+.+.. +..+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 38999999987766666643 2567777777 5666665665554421 124568999998521 334556
Q ss_pred eEEEecccccccCChhh
Q 042544 170 DAVYAIEATCHAPDAAE 186 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~ 186 (305)
-++++-+++.+++....
T Consensus 159 tl~i~Egvl~Yl~~~~~ 175 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPEQV 175 (183)
T ss_dssp EEEEEESSGGGS-HHHH
T ss_pred eEEEEcchhhcCCHHHH
Confidence 68888888999887643
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=86.29 E-value=5 Score=35.08 Aligned_cols=105 Identities=14% Similarity=0.011 Sum_probs=69.9
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCC---------CCCCCe
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV--DKTCNFVKADFMKMP---------FPDNSF 169 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~---------~~~~~f 169 (305)
-..|+-+|||-=.-+..+-...+.+|+-+|. |+.++.=++.++..+. +...+++..|+.+-. |..+.-
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 4689999998533333332212478888887 6777766666665543 236889999998422 223344
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
-++++-+++.+++.....+ ++..+...+.||-.++..
T Consensus 172 t~~iaEGLl~YL~~~~v~~---------ll~~I~~~~~~gS~~~~~ 208 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDR---------LLSRIAALSAPGSRVAFD 208 (297)
T ss_pred eEEEeccccccCCHHHHHH---------HHHHHHHhCCCCceEEEe
Confidence 5788889999999887654 688888887777666554
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=86.27 E-value=3 Score=36.87 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=60.1
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC---CCC-C-CCCC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF---MKM-P-FPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~---~~~-~-~~~~ 167 (305)
...+.++.+||-.|+|. |..+..+++..+.+ +++++.++...+.+++ .+.. .++..+- ..+ . .+..
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 226 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD---DTINPKEEDVEKVRELTEGR 226 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEecCccccHHHHHHHhCCC
Confidence 44567888999998765 66777777666776 9999998887766543 2221 1211110 000 1 1223
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+++... .... .+..+.+.|+++|.++...
T Consensus 227 ~~d~vld~~-----g~~~------------~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 227 GADLVIEAA-----GSPA------------TIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCEEEECC-----CCHH------------HHHHHHHHhhcCCEEEEEc
Confidence 488887531 1111 3778899999999977654
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=85.78 E-value=5.2 Score=32.28 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=48.9
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.....+.+||=+|.= ||.+...+... .++|+.+|+.|.|-.. +++++.|... +.++.+.+|+|+-
T Consensus 40 ~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~----~~~~~G~~DlivD 105 (254)
T COG4017 40 LEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL----LKFIRGEVDLIVD 105 (254)
T ss_pred hcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh----cCCCCCceeEEEe
Confidence 334567899999874 77777777654 7899999999988542 3455666544 3345678999986
Q ss_pred cccccc
Q 042544 175 IEATCH 180 (305)
Q Consensus 175 ~~~l~~ 180 (305)
.-.+.-
T Consensus 106 lTGlGG 111 (254)
T COG4017 106 LTGLGG 111 (254)
T ss_pred ccccCC
Confidence 544443
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.69 E-value=2.2 Score=38.13 Aligned_cols=68 Identities=19% Similarity=0.335 Sum_probs=56.6
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHh--hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQ--FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP 163 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~ 163 (305)
.+.+.+|.+|+|++|-.|.-+.+++. +...++.|+|.++.-.+..++.+...|.. .++...+|+...+
T Consensus 208 ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t~ 277 (413)
T KOG2360|consen 208 LLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNTA 277 (413)
T ss_pred hcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCCC
Confidence 56777889999999999999999884 34689999999999999888888888764 5677788887743
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.45 E-value=3.2 Score=36.89 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=57.1
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCee
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFD 170 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD 170 (305)
...+.++.+||=.||| .|..+..+++..+.+ |++++.++..++.+++ .|...-+.....+...+ ......+|
T Consensus 155 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d 230 (347)
T PRK10309 155 LAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFD 230 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCC
Confidence 3456788899999875 344555566555775 7899999988877644 23211011111010000 01123466
Q ss_pred -EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 -AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 -~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+-. ..... .+.+..+.|++||.+++.-
T Consensus 231 ~~v~d~-----~G~~~------------~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 231 QLILET-----AGVPQ------------TVELAIEIAGPRAQLALVG 260 (347)
T ss_pred eEEEEC-----CCCHH------------HHHHHHHHhhcCCEEEEEc
Confidence 55421 11111 4788889999999988764
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=85.17 E-value=5.6 Score=34.91 Aligned_cols=96 Identities=27% Similarity=0.289 Sum_probs=58.9
Q ss_pred cCCCCCCeEEEEcC-CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC----CCC--CCCCCCC
Q 042544 96 LGLKSGQKVLDVGC-GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD----FMK--MPFPDNS 168 (305)
Q Consensus 96 ~~~~~~~~vLDiGc-G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d----~~~--~~~~~~~ 168 (305)
.++.||.+|-=+|. |-|.++..+++..+.+|+++|-+..--+.+-+. .|.+ .|+..- ... ...-|.-
T Consensus 177 ~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LGAd---~fv~~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LGAD---VFVDSTEDPDIMKAIMKTTDGG 250 (360)
T ss_pred cCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cCcc---eeEEecCCHHHHHHHHHhhcCc
Confidence 45678888777774 589999999976799999999997555544443 3332 222211 110 0011233
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.|-|.+. .. ..+..+.+.||++|.+++.-
T Consensus 251 ~~~v~~~--a~-----------------~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 251 IDTVSNL--AE-----------------HALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred ceeeeec--cc-----------------cchHHHHHHhhcCCEEEEEe
Confidence 3333321 11 14778899999999998865
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=85.11 E-value=3.7 Score=31.62 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCC
Q 042544 86 KRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNN 132 (305)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s 132 (305)
+...++.......-+ .-|||+|-|.|..--++.+ .++.+|+.+|-.
T Consensus 15 R~~L~~a~~~v~~~~-G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 15 RDCLNWAAAQVAGLP-GPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHHHhcCCC-CceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 334445554444434 4799999999999999985 578999999974
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=84.45 E-value=9.7 Score=33.23 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=58.8
Q ss_pred HHcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 94 LQLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
....+.++.+||=.|+| .|..+..+++..+.+|++++.++...+.+++ .|... . .+.... .....+|++
T Consensus 149 ~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~----~-~~~~~~-~~~~~~d~v 218 (319)
T cd08242 149 EQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVET----V-LPDEAE-SEGGGFDVV 218 (319)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCcE----E-eCcccc-ccCCCCCEE
Confidence 34567788899988754 2334444455568899999999988887765 23221 1 111111 233568888
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+-.. .... .+..+.+.|+++|.+++.
T Consensus 219 id~~-----g~~~------------~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 219 VEAT-----GSPS------------GLELALRLVRPRGTVVLK 244 (319)
T ss_pred EECC-----CChH------------HHHHHHHHhhcCCEEEEE
Confidence 7531 1111 377788899999988873
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=84.03 E-value=3.8 Score=37.12 Aligned_cols=101 Identities=17% Similarity=0.261 Sum_probs=57.5
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc--CCCC-C-CCCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA--DFMK-M-PFPDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~~~ 168 (305)
...+.++.+||=.|+| .|..+..+++..+. .|+++|.++...+.+++ .|...-+..... +... + ....+.
T Consensus 188 ~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 188 VADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCC
Confidence 3467789999999875 33444555654566 58999999988877754 233211111100 1100 0 011125
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
+|+|+-.-. ... .+....+.|++| |.+++.-
T Consensus 264 ~d~vid~~G-----~~~------------~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 264 ADYSFECVG-----DTG------------IATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCEEEECCC-----ChH------------HHHHHHHhhccCCCEEEEEC
Confidence 788764211 111 377788899998 9887643
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=83.94 E-value=4.1 Score=36.02 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=58.0
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C--CCCCCCee
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M--PFPDNSFD 170 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~~fD 170 (305)
..+.++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++. +...-+.....+..+ + ..+.+.+|
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 456678899987775 36666777765564 899998888777665542 211101111111101 0 01235689
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++.... .. . .+.+..+.|+++|.++..
T Consensus 239 ~vld~~g-----~~-~-----------~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIEAVG-----FE-E-----------TFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEEccC-----CH-H-----------HHHHHHHHhhcCCEEEEE
Confidence 8875311 10 1 478889999999988754
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=83.42 E-value=13 Score=31.74 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=65.8
Q ss_pred HHcCCCCCCeEEEE--cCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC--CCCC-CCC
Q 042544 94 LQLGLKSGQKVLDV--GCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK--MPFP-DNS 168 (305)
Q Consensus 94 ~~~~~~~~~~vLDi--GcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~-~~~ 168 (305)
+..++++|.+||-- ..|.|..+..+++..+.++++.--+.+-.++|+++ |...-|.+...|+.+ ..+. ...
T Consensus 140 e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTngKG 215 (336)
T KOG1197|consen 140 EAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITNGKG 215 (336)
T ss_pred HhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccCCCC
Confidence 35678899888754 34667777778766689999998888888887774 433334444444433 1222 234
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.|+++-+-- . .++..-..+||++|.++-.-
T Consensus 216 Vd~vyDsvG-----~-------------dt~~~sl~~Lk~~G~mVSfG 245 (336)
T KOG1197|consen 216 VDAVYDSVG-----K-------------DTFAKSLAALKPMGKMVSFG 245 (336)
T ss_pred ceeeecccc-----c-------------hhhHHHHHHhccCceEEEec
Confidence 677752211 1 15778889999999987754
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=83.35 E-value=15 Score=33.24 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=62.8
Q ss_pred HcCCCCCCeEEEEcCCCChH----HHHHHhh----cCCeEEEEcC----CHHHHHHHHHHHH----hcCCCCCeEEEEc-
Q 042544 95 QLGLKSGQKVLDVGCGIGGP----LREIAQF----SSTSVTGLNN----NEYQITRGKELNR----FAGVDKTCNFVKA- 157 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~----~~~l~~~----~~~~v~gvD~----s~~~l~~a~~~~~----~~~~~~~~~~~~~- 157 (305)
.+.-.+.-+|+|+|.|.|.. ...|+.. |..++|||+. +...++.+.+++. ..|++ .+|...
T Consensus 105 A~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fef~~v~ 182 (374)
T PF03514_consen 105 AFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FEFHPVV 182 (374)
T ss_pred HhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EEEEecc
Confidence 33444667999999999962 2233333 2369999999 7777777766643 33443 455442
Q ss_pred --CCCCCC-----CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 158 --DFMKMP-----FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 158 --d~~~~~-----~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
+.+.+. ..++..=+|-+...+||+.+...... .....+-...+.|+|.- +++.+.+.
T Consensus 183 ~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~----~~~~~~L~~ir~L~P~v-vv~~E~ea 246 (374)
T PF03514_consen 183 VESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALE----NPRDAFLRVIRSLNPKV-VVLVEQEA 246 (374)
T ss_pred cCchhhCCHHHhCccCCcEEEEEeehhhhhhcccccccc----chHHHHHHHHHhcCCCE-EEEEeecC
Confidence 333321 22232334445556788874321100 00112334455678874 44444443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.15 E-value=2.7 Score=37.80 Aligned_cols=98 Identities=15% Similarity=0.220 Sum_probs=59.3
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCCC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~ 167 (305)
...+.++.+||=.|+|. |..+..+++..+. .++++|.++...+.+++. +.. .++..+-..+ .....
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~---~~i~~~~~~~~~~v~~~~~~ 253 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT---HVINPKEEDLVAAIREITGG 253 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc---EEecCCCcCHHHHHHHHhCC
Confidence 34567788999888753 5566666655577 699999999887766542 221 1221111110 01124
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+-.- .... .+..+.+.|+++|.++...
T Consensus 254 ~~d~vld~~-----g~~~------------~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 254 GVDYALDTT-----GVPA------------VIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCcEEEECC-----CCcH------------HHHHHHHHhccCCEEEEeC
Confidence 588887431 1111 4788899999999988754
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=82.83 E-value=19 Score=31.45 Aligned_cols=95 Identities=23% Similarity=0.260 Sum_probs=57.4
Q ss_pred HHcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 94 LQLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
....+.++.+||=.||| .|..+..+++..+.+|++++.++...+.+++ .|.. .++.. ... +...+|++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~--~~~--~~~~vD~v 229 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD---WAGDS--DDL--PPEPLDAA 229 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc---EEecc--Ccc--CCCcccEE
Confidence 34567778888888765 2233344555568899999998877666633 2321 11111 111 23457877
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.... ... .+..+.+.|+++|.++...
T Consensus 230 i~~~~-----~~~------------~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 230 IIFAP-----VGA------------LVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEcCC-----cHH------------HHHHHHHHhhcCCEEEEEc
Confidence 64311 111 4888999999999988754
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=82.63 E-value=14 Score=33.75 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=35.3
Q ss_pred cCCCCCCeEEEEc-CC-CChHHHHHHhhcC---CeEEEEcCCHHHHHHHHHH
Q 042544 96 LGLKSGQKVLDVG-CG-IGGPLREIAQFSS---TSVTGLNNNEYQITRGKEL 142 (305)
Q Consensus 96 ~~~~~~~~vLDiG-cG-~G~~~~~l~~~~~---~~v~gvD~s~~~l~~a~~~ 142 (305)
..+.++.+||=+| +| .|..+..+++..+ .+|+++|.++..++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4567888999887 34 6667777775433 3799999999999888774
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.98 E-value=1.4 Score=39.88 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCCC--CCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 150 KTCNFVKADFMKM--PFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 150 ~~~~~~~~d~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++++++++++.+. ..+++++|.++....+.++++....+ .++++.+.++|||++++-.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~---------~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNE---------EWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHH---------HHHHHHHHhCCCCEEEEee
Confidence 6899999999873 25679999999999999998876544 5899999999999999854
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.66 E-value=7.7 Score=34.83 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=54.1
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEE-cCCCCCCCCCCCeeEEEe
Q 042544 97 GLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVK-ADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 97 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~v~~ 174 (305)
.+.++.+||=.|+| .|..+..+++..+.+|++++.++.....+. ...|.. .++. .+...+.-..+.+|+|+-
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid 253 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGAD---SFLVSTDPEKMKAAIGTMDYIID 253 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCCc---EEEcCCCHHHHHhhcCCCCEEEE
Confidence 34578899988886 455666666656889999988765432221 122321 1111 110011000124787764
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.-. ... .+....+.|+++|.++...
T Consensus 254 ~~g-----~~~------------~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 254 TVS-----AVH------------ALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCC-----CHH------------HHHHHHHHhcCCcEEEEeC
Confidence 211 111 4777889999999988753
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.25 E-value=5.4 Score=34.19 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC---CCeeEEEe
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD---NSFDAVYA 174 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~v~~ 174 (305)
.|..|+=+| -.-..++.++ .....+|..+||++..+....+-+...|.. +++.+.-|+.. |+|+ ..||+.+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~-plpe~~~~kFDvfiT 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRN-PLPEDLKRKFDVFIT 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcc-cChHHHHhhCCeeec
Confidence 567899999 4444555555 334579999999999999998888888874 68899999986 4543 67998763
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.07 E-value=1.1 Score=38.98 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=37.1
Q ss_pred CeEEEEcCCCCC--CCCCCCeeEEEecccccc---cCC-------hhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 151 TCNFVKADFMKM--PFPDNSFDAVYAIEATCH---APD-------AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 151 ~~~~~~~d~~~~--~~~~~~fD~v~~~~~l~~---~~~-------~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
...++++|..+. .+++++||+|++.--..- ..+ ...... ....+.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~-----l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDW-----LYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHH-----HHHHHHHHHHHhCCCcEEEEE
Confidence 356788888773 467789999998432210 000 000000 012689999999999998875
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=80.62 E-value=7.6 Score=34.52 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=58.7
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----C-CCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----P-FPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~ 166 (305)
...+.++.+||=.|+| .|..+..+++..+. .|+++|.++..++.+++ .|.. .++..+-..+ . ...
T Consensus 161 ~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 161 LANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTGG 233 (351)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhCC
Confidence 4567788899988875 34555566655566 69999999888777664 2322 1211111110 0 122
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..+|+|+.... ... .+.++.+.|+++|.++..
T Consensus 234 ~~~d~vld~~g-----~~~------------~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 234 KGVDAVIIAGG-----GQD------------TFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCCcEEEECCC-----CHH------------HHHHHHHHhhcCCEEEEe
Confidence 45888874211 111 478889999999988764
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=80.04 E-value=3.2 Score=37.51 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=29.3
Q ss_pred CCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 100 SGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 100 ~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
++.+|+=+|+| .|..+...+...+++|+.+|.++..++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 34578989887 4455555554457899999999877655443
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 305 | ||||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 9e-17 | ||
| 2o57_A | 297 | Crystal Structure Of A Putative Sarcosine Dimethylg | 2e-09 | ||
| 3bkw_A | 243 | Crystal Structure Of S-Adenosylmethionine Dependent | 3e-06 | ||
| 3l8d_A | 242 | Crystal Structure Of Methyltransferase From Bacillu | 9e-05 | ||
| 3uj6_A | 266 | Semet Phosphoethanolamine Methyltransferase From Pl | 1e-04 | ||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 1e-04 | ||
| 3uj7_A | 266 | Phosphoethanolamine Methyltransferase From Plasmodi | 1e-04 | ||
| 3ujd_A | 266 | Phosphoethanolamine Methyltransferase Mutant (Y19f) | 4e-04 | ||
| 3ujc_A | 266 | Phosphoethanolamine Methyltransferase Mutant (H132a | 8e-04 | ||
| 1ve3_A | 227 | Crystal Structure Of Ph0226 Protein From Pyrococcus | 9e-04 |
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
| >pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine Methyltransferase From Galdieria Sulphuraria Length = 297 | Back alignment and structure |
|
| >pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent Methyltransferase (Np_104914.1) From Mesorhizobium Loti At 1.60 A Resolution Length = 243 | Back alignment and structure |
|
| >pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242 | Back alignment and structure |
|
| >pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
| >pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
| >pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
| >pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 1e-72
Identities = 59/261 (22%), Positives = 95/261 (36%), Gaps = 40/261 (15%)
Query: 45 ANYTDMVNKYYDLVTSFYEFGWGESFHFA---PRWKGESLRESIKRHEHFLALQLGLKSG 101
A + V + YD T + WGE+ HF S+ ++ R + L ++SG
Sbjct: 3 APTPEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSG 62
Query: 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161
+VLDVGCGIG P +A VTG++ + Q+ + AG+ F AD M
Sbjct: 63 DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD 122
Query: 162 MPFPDNSFDAVYAIEATCHAPD------------------------------------AA 185
+PF D SFDAV+A+E+ H PD
Sbjct: 123 LPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVD 182
Query: 186 EIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTS 245
G G+ + + ++QA V D++ + + + S
Sbjct: 183 AFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARPSLVKTAEAFENARSQVE-PF 241
Query: 246 VGRFVTRNMVKALEFVGLAPK 266
+G M+ + P+
Sbjct: 242 MGAEGLDRMIATFRGLAEVPE 262
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 222 bits (566), Expect = 2e-71
Identities = 64/319 (20%), Positives = 98/319 (30%), Gaps = 68/319 (21%)
Query: 28 KYEKYHVCYGGEEEERKANYTDMVNKYYDLVTS--FYEFGWG-ESFHF---APRWKGESL 81
+ E + + D YYD S FY WG E H + +
Sbjct: 2 RVENSN--GQSQPAATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEI 59
Query: 82 RESIKRHEHFLALQLG----LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQIT 137
RE+ R + +LA +L L+ K LD+G G GG R + + S+ LN Q
Sbjct: 60 REASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNK 119
Query: 138 RGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD-------------- 183
R +E N AG+ F+++P DNS+D +++ +A H+PD
Sbjct: 120 RNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKP 179
Query: 184 -------------------AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSP 224
I L D+ S K+ G +
Sbjct: 180 RGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLV 239
Query: 225 LPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAA 284
+ + R +A S Q +++ E
Sbjct: 240 HHYSKVKA---------------ELIKR-------SSEIASFCSPEFQANMKRGLEHWIE 277
Query: 285 GGRKEIFTPMYFFLARKPQ 303
GGR T L RK
Sbjct: 278 GGRAGKLT-WGGMLFRKSD 295
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 3e-60
Identities = 39/236 (16%), Positives = 69/236 (29%), Gaps = 35/236 (14%)
Query: 27 EKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYE-FGWGESFHFAPRWKGESLRESI 85
E +Y R + + + +Y + G E + + E R
Sbjct: 43 EDIARYWNNEARPVNLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKKVIAELHRLES 102
Query: 86 KRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF 145
+ E + ++D GCG GG + + + V G+ + Q G R
Sbjct: 103 AQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARE 162
Query: 146 AGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA------------------------ 181
+D + + PF + A + E+T +
Sbjct: 163 LRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG 222
Query: 182 --------PDAAEIEI-GDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWY 228
P +I +I S R+ L A+ DL PD LP++
Sbjct: 223 CWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLTPD-TLPYW 277
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 3e-51
Identities = 43/270 (15%), Positives = 84/270 (31%), Gaps = 57/270 (21%)
Query: 41 EERKANYTDM-VNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLK 99
E ++ T + N+Y D YEF +GE++ + + L
Sbjct: 5 ENLNSDKTFLENNQYTDEGVKVYEFIFGENYI----------SSGGLEATKKILSDIELN 54
Query: 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF 159
KVLD+G G+GG I + G++ + E + F D
Sbjct: 55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANER---VSGNNKIIFEANDI 111
Query: 160 MKMPFPDNSFDAVYAIEAT--CHAPD----AAEI-------------------------- 187
+ FP+N+FD +Y+ +A + +
Sbjct: 112 LTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDE 171
Query: 188 ---EIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLT 244
+ + + + + L F+ + KDL+ W L+ H L +
Sbjct: 172 FKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLSDY----WNQLLEVEHKYLHENKEE 227
Query: 245 SVGRFVTRNMVKALEF----VGLAPKGSQR 270
+ F + + + + + + QR
Sbjct: 228 FLKLFSEKKFISLDDGWSRKIKDSKRKMQR 257
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 1e-42
Identities = 37/235 (15%), Positives = 72/235 (30%), Gaps = 42/235 (17%)
Query: 60 SFYEFGWG---ESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLR 116
S ++F + F R G E+ ++ ++ L K+ D+GCG GG
Sbjct: 7 SIHDFDFSFICNYFKLLKRQ-GPGSPEATRKA---VSFINELTDDAKIADIGCGTGGQTL 62
Query: 117 EIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176
+A + +TG++ I E A + +PF + D +++
Sbjct: 63 FLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122
Query: 177 ATCHAPD-------------------------------AAEIEIGDGLPDIRSTRKCLEA 205
A + E D P+I C++
Sbjct: 123 AIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDK 182
Query: 206 LKQAGFEVIWEKDLA-PDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALE 259
+++AG+ L ++ P D +F G + +K +
Sbjct: 183 MERAGYTPTAHFILPENCWTEHYFAPQDE---VRETFMKEHAGNKTAMDFMKGQQ 234
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-37
Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 38/213 (17%)
Query: 52 NKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGI 111
+ + F + F R S + L+ L + D+GCG
Sbjct: 2 SNENKTIHDFELNLICDFFSNMERQGPGSPEVT----LKALSFIDNLTEKSLIADIGCGT 57
Query: 112 GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171
GG +A + VTGL+ I R +G+ + +PF + D
Sbjct: 58 GGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDL 117
Query: 172 VYAIEATCH-------------------------------APDAAEIEIGDGLPDIRSTR 200
+++ A + P D P+I +
Sbjct: 118 IWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIP 177
Query: 201 KCLEALKQAGFEVIWEKDLAPDSPL--PWYLPL 231
+ + +AG+ + L P++ ++ P
Sbjct: 178 NQVAKIHKAGYLPVATFIL-PENCWTDHYFTPK 209
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-34
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 2/94 (2%)
Query: 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV 148
FL + VLD G G P I G+ ++ Q+ + + +R
Sbjct: 12 YRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF 71
Query: 149 DKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAP 182
N K D K+PF D S VY+ H
Sbjct: 72 K--LNISKGDIRKLPFKDESMSFVYSYGTIFHMR 103
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 7e-32
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 65 GWGESFHFAPRWK---GESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF 121
G+ E + P + + R I+ E L + K KVLD+ CG+GG + +
Sbjct: 2 GFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDY 59
Query: 122 SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181
V G++ +E I + +E + + F+ D K+ F D +FD V I++ H
Sbjct: 60 GF-EVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARKLSFEDKTFDYVIFIDSIVHF 116
Query: 182 PD 183
Sbjct: 117 EP 118
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 9e-30
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 51/229 (22%)
Query: 39 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGL 98
E K N+ + K +D F+ E + +S R + +
Sbjct: 4 GECMTKFNWHESAEKKWDSSAEFWNQNSQE------------MWDSGSRSTIIPFFEQYV 51
Query: 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158
K +VLDVGCG G ++++ G++ +E I +GKE + F+K D
Sbjct: 52 KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGPDLS----FIKGD 106
Query: 159 FMKMPFPDNSFDAVYAIEATCHAPD---------------------------------AA 185
+PF + F+A+ AI + +
Sbjct: 107 LSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYP 166
Query: 186 EIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDS-PLPWYLPLDT 233
+ D + + + + +K+ GF+V+ + L T
Sbjct: 167 RLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQLST 215
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-25
Identities = 44/273 (16%), Positives = 84/273 (30%), Gaps = 56/273 (20%)
Query: 75 RWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNE 133
+ L E + E L G KVL+ GCGIG +A+ +T ++ +
Sbjct: 12 EREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISP 71
Query: 134 YQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD----AAEI-- 187
+ + +E G+ F++A+ +PF D+SFD ++ H +
Sbjct: 72 ESLEKARENTEKNGIK-NVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKK 130
Query: 188 ------------------------------------EIGDGLPDIRSTRKCLEALKQAGF 211
+ R+ L+++GF
Sbjct: 131 VLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGF 190
Query: 212 EVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRV 271
E I + P Y+ + F L ++ V ++L+ + + ++
Sbjct: 191 EKIRVE------PRMVYIDSSKPEL-VDGFILKTIIPMVEGVKEQSLKMQIIKEEEWEKG 243
Query: 272 QDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQH 304
+ L K AE + K H
Sbjct: 244 IEELHKTAEHGGT-----FCYTFFKGWGTKEGH 271
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 3e-25
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 19/142 (13%)
Query: 42 ERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSG 101
E K + K D ++ P + + G+ +G
Sbjct: 4 ENKKKFDKKGAKNMDEISKTL------FAPIYPIIA------------ENIINRFGITAG 45
Query: 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161
+D+G G G +A+ S S+ L+ +++ + A ++ V+ D
Sbjct: 46 -TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN 104
Query: 162 MPFPDNSFDAVYAIEATCHAPD 183
+P DN D + + + D
Sbjct: 105 IPIEDNYADLIVSRGSVFFWED 126
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 1e-19
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 34/167 (20%)
Query: 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD 149
L L +K G ++LD+G G G L A+ + TG++ + + K GV
Sbjct: 26 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS 85
Query: 150 KTCNFVKADFMKMPFPDNSFDAVYAIEATCH----------------------------- 180
+ +F+ D + D + AT
Sbjct: 86 ERVHFIHNDAAGYV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWR 144
Query: 181 ----APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDS 223
+ A+ D + + A G++V+ +
Sbjct: 145 QLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEG 191
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 7e-19
Identities = 41/234 (17%), Positives = 77/234 (32%), Gaps = 24/234 (10%)
Query: 51 VNKYYDLVTSFYEFGWGESFHFAPRW---KGESLRESIKRHEHFL-ALQLGLKSGQKVLD 106
+N + ++ G G R + ++ + +RH HF ALQ L+ G V
Sbjct: 66 LNAEWTHRLVTHQPGSGALAPLE-RVFYERLPAVLATRERHGHFRRALQRHLRPGCVVAS 124
Query: 107 VGCGIGGPLREIA--QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF 164
V CG L + + G++ + + L + + D K+
Sbjct: 125 VPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT 184
Query: 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSP 224
+ +D + + + PD A + R+ +ALK G V L P
Sbjct: 185 RE-GYDLLTSNGLNIYEPDDARV--------TELYRRFWQALKPGGALVT--SFLTPP-- 231
Query: 225 LPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKA 278
P P + + V + ++ A + + + LE+A
Sbjct: 232 -PALSPDSPWDMQAIDPHDLQLQQLV---FTRLIQPRWNALRTHAQTRAQLEEA 281
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 4e-18
Identities = 46/244 (18%), Positives = 82/244 (33%), Gaps = 37/244 (15%)
Query: 75 RWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEY 134
E L + + A+ L G +++D+GCG G R + ++ V GL+ +E
Sbjct: 20 GRSIEGLDGAAEWPA-LRAM-LPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEK 77
Query: 135 QITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLP 194
+ R + G+ + +AD K+ P +SFD Y+ A + D A +
Sbjct: 78 MLARARAAGPDTGIT----YERADLDKLHLPQDSFDLAYSSLALHYVEDVARL------- 126
Query: 195 DIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSF-----RLTSVGRF 249
R+ + L F +AP P + + + R T
Sbjct: 127 -FRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK 185
Query: 250 VTRN-------MVKALEFVGLAPKGSQRVQDFLE----KAAEGLAAGGRKEIFTPMYFFL 298
+ AL G ++ E A +E+ PM+ +
Sbjct: 186 GVVKHHRTVGTTLNALIRSGF------AIEHVEEFCPTDAQITARPELAEELDRPMFLLV 239
Query: 299 -ARK 301
AR+
Sbjct: 240 SARR 243
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 4e-17
Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 20/155 (12%)
Query: 88 HEHFLAL----QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKE 141
++ +++ + ++D GCG G + + TG+++ E + +E
Sbjct: 6 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE 65
Query: 142 LNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRK 201
L R D F++ D ++ D +D H +K
Sbjct: 66 LFRLLPYD--SEFLEGDATEIELNDK-YDIAICHAFLLHMTTPE-----------TMLQK 111
Query: 202 CLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHF 236
+ ++K+ G + +E + S F
Sbjct: 112 MIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEF 146
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 1e-16
Identities = 27/186 (14%), Positives = 54/186 (29%), Gaps = 32/186 (17%)
Query: 51 VNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCG 110
+ K D +T G + +++ H +A +K G+K+L++GCG
Sbjct: 2 MEKRLDYITDLMALGPTANAR--------TIQRRQTAHRLAIAEAWQVKPGEKILEIGCG 53
Query: 111 IGGPLREIAQF--SSTSVTGLNNNE------YQITRGKELNRFAGVDKTCNFVKADFMKM 162
G +A SS VTG++ + + + +
Sbjct: 54 QGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD 113
Query: 163 ---PFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALK-QAGFEVIWEKD 218
P D FD V + + + + + + E
Sbjct: 114 DLGPIADQHFDRVVLAHSLWY------------FASANALALLFKNMAAVCDHVDVAEWS 161
Query: 219 LAPDSP 224
+ P +
Sbjct: 162 MQPTAL 167
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 6e-16
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 75 RWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEY 134
W+ S + + + + L+ ++LD+GCG G E+A SVTG++ N
Sbjct: 5 YWEKVSGKNIPSSLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSE 63
Query: 135 QITRGKELNRFAGVD----KTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIE 188
I + R G++ F + + F D+SFD PD E
Sbjct: 64 AIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERS 121
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 7e-16
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 14/115 (12%)
Query: 69 SFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTG 128
+ H G + ++ +VLD+G G G + + G
Sbjct: 2 AHHHHHHSLG------------LMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIG 48
Query: 129 LNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD 183
++ + + + GV+ F + +PFPD+SFD + A H D
Sbjct: 49 VDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLPFPDDSFDIITCRYAAHHFSD 102
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 1e-14
Identities = 36/216 (16%), Positives = 65/216 (30%), Gaps = 22/216 (10%)
Query: 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV 148
+ L++G G G + L+ + + ++ + AGV
Sbjct: 28 TAMASAVHPKGEEPVFLELGVGTGRIALPLIA-RGYRYIALDADAAMLEVFRQ--KIAGV 84
Query: 149 DKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQ 208
D+ V+AD +P PD S V + PD + + + LK
Sbjct: 85 DRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWP-----------KVLAEAIRVLKP 133
Query: 209 AGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTR--NMVKALEFVGLAPK 266
G + ++ W L F+ G R + +AL +GL P+
Sbjct: 134 GGALLEG--WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPR 191
Query: 267 GSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302
+ + E+ +Y F P
Sbjct: 192 TREVARWREERTPREALEALS----ERLYSFTQGLP 223
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 1e-14
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 14/132 (10%)
Query: 52 NKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGI 111
NKY D F+E + + K +K+ L + + VLD+GCG
Sbjct: 6 NKYDD--KHFFE-QYSQMPRSKEGLKAAGEWHELKKM-------LPDFNQKTVLDLGCGF 55
Query: 112 GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171
G A+ + V G++ +E +T K V + + + ++++
Sbjct: 56 GWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVC----YEQKAIEDIAIEPDAYNV 111
Query: 172 VYAIEATCHAPD 183
V + A +
Sbjct: 112 VLSSLALHYIAS 123
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 6e-14
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 75 RWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEY 134
W G L + E AL+ L G+ +L+VG G G LR G+ +E
Sbjct: 12 AWYGTPLGAYVIAEEER-ALKGLLPPGESLLEVGAGTGYWLRR---LPYPQKVGVEPSEA 67
Query: 135 QITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD 183
+ G+ R +V+A +PFP SFD V D
Sbjct: 68 MLAVGRR--RAPEAT----WVRAWGEALPFPGESFDVVLLFTTLEFVED 110
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 6e-13
Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 23/180 (12%)
Query: 52 NKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGI 111
++ Y + W F S R ++ L+ ++L +GCG
Sbjct: 11 DQRYQGAADSAPYDWFGDF--------SSFRALLEPE---------LRPEDRILVLGCGN 53
Query: 112 GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171
E+ +VT ++ + + + +A V + + D K+ FP SFD
Sbjct: 54 SALSYELFLGGFPNVTSVDYSSVVVAAMQA--CYAHVPQ-LRWETMDVRKLDFPSASFDV 110
Query: 172 VY---AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWY 228
V ++A +G+ + + + G I AP Y
Sbjct: 111 VLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHY 170
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 6e-13
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 86 KRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF 145
+ + LK ++VLDV G G A F V + E + +
Sbjct: 24 SDLAKLMQI-AALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEG 81
Query: 146 AGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD 183
G + +V+ D +MPF D F V A H P+
Sbjct: 82 NGHQQ-VEYVQGDAEQMPFTDERFHIVTCRIAAHHFPN 118
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 7e-13
Identities = 33/183 (18%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 67 GESFHF--APRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124
F + S E + + + GLK G VLDVG G G L +++
Sbjct: 4 AHKFDPSKIKKLDDPSRLELFDPEK--VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGE 61
Query: 125 S--VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAP 182
V ++ E + E G+ +K++ K+P PDN+ D ++
Sbjct: 62 KGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTVDFIFMAFTFHELS 120
Query: 183 D------------------------AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218
+ E + G ++ S + L+ AG V +
Sbjct: 121 EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVE 180
Query: 219 LAP 221
+
Sbjct: 181 VGK 183
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 7e-13
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV 148
+ L L L G + D+G G GG +A V + + + +
Sbjct: 24 NAIINL-LNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHPQV--- 78
Query: 149 DKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAA 185
+ + PD S D V +I A H
Sbjct: 79 ----EWFTGYAENLALPDKSVDGVISILAIHHFSHLE 111
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-12
Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 21/136 (15%)
Query: 48 TDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDV 107
+D ++ ++ + +E F ++ L + L L + +++
Sbjct: 3 SDKIHHHHHHMWHIFE-------RFVNEYERWFLVHRF-AYLSELQAVKCLLPEGRGVEI 54
Query: 108 GCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167
G G G + G+ +E ++ + +K +P D
Sbjct: 55 GVGTGRFAVPLKI-----KIGVEPSERMAEIARK--------RGVFVLKGTAENLPLKDE 101
Query: 168 SFDAVYAIEATCHAPD 183
SFD + C D
Sbjct: 102 SFDFALMVTTICFVDD 117
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 1e-12
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 15/103 (14%)
Query: 96 LGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKE-----LNRFAGV 148
G G VLD+GCG G + ++ V G++ + Q+ ++ +F G
Sbjct: 79 DGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS 138
Query: 149 DKTCN--FVKAD------FMKMPFPDNSFDAVYAIEATCHAPD 183
N F+K PD+S D V + + +
Sbjct: 139 PSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTN 181
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-12
Identities = 23/152 (15%), Positives = 57/152 (37%), Gaps = 14/152 (9%)
Query: 86 KRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNR 144
+ +++ +LD+G G G + + + + T ++ +E + K R
Sbjct: 30 DFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKN--R 87
Query: 145 FAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE 204
F G + +++AD+ K F + +D V + + H D + E+ ++
Sbjct: 88 FRG-NLKVKYIEADYSKYDF-EEKYDMVVSALSIHHLEDEDKKEL---------YKRSYS 136
Query: 205 ALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHF 236
LK++G + + + + +
Sbjct: 137 ILKESGIFINADLVHGETAFIENLNKTIWRQY 168
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 1e-12
Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 15/152 (9%)
Query: 39 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHF---LALQ 95
+++ + + ++Y+ + + S +I+ +F ++
Sbjct: 11 RKDQAMEGKKEEIREHYNSIRERGR-----------ESRQRSKTINIRNANNFIKACLIR 59
Query: 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFV 155
L K G VLD+GCG GG L + + G++ E I + R F
Sbjct: 60 LYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFR 119
Query: 156 KADFMKMPF-PDNSFDAVYAIEATCHAPDAAE 186
D FD + + + +A +E
Sbjct: 120 AQDSYGRHMDLGKEFDVISSQFSFHYAFSTSE 151
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 5e-12
Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 14/142 (9%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNF 154
L + LD G GIG + + + L ++ + +E R F
Sbjct: 88 SLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML---EEAKRELAGMPVGKF 144
Query: 155 VKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214
+ A P N++D + + DA ++ + C +AL G+ I
Sbjct: 145 ILASMETATLPPNTYDLIVIQWTAIYLTDADFVKF---------FKHCQQALTPNGY--I 193
Query: 215 WEKDLAPDSPLPWYLPLDTSHF 236
+ K+ D+S
Sbjct: 194 FFKENCSTGDRFLVDKEDSSLT 215
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 7e-12
Identities = 22/137 (16%), Positives = 34/137 (24%), Gaps = 20/137 (14%)
Query: 48 TDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDV 107
TD V+K Y T E G + L +LDV
Sbjct: 2 TDDVSKAYSSPTFDAEALLGTVISAEDPDR-------------VLIEPWATGVDGVILDV 48
Query: 108 GCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167
G G G +A + GL + ++ V F +
Sbjct: 49 GSGTGRWTGHLAS-LGHQIEGLEPATRLVELARQ--THPSVT----FHHGTITDLSDSPK 101
Query: 168 SFDAVYAIEATCHAPDA 184
+ + A + H
Sbjct: 102 RWAGLLAWYSLIHMGPG 118
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 84 SIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELN 143
S++R E +L + ++D GCG G + + +F++ + ++ N + KE
Sbjct: 2 SLERPEEYLPN-IFEGKKGVIVDYGCGNGFYCKYLLEFATK-LYCIDINVIALKEVKE-- 57
Query: 144 RFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD 183
+ V PDNS D + + D
Sbjct: 58 -------KFDSVITLSDPKEIPDNSVDFILFANSFHDMDD 90
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 2e-11
Identities = 27/155 (17%), Positives = 47/155 (30%), Gaps = 13/155 (8%)
Query: 81 LRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGK 140
+ S K + FL LD G GIG + + V ++ E + + K
Sbjct: 60 INSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAK 119
Query: 141 ELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTR 200
G + N+ +S+D ++ H D R
Sbjct: 120 TYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHL---------AEFLR 169
Query: 201 KCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSH 235
+C +L+ G VI + +D+S
Sbjct: 170 RCKGSLRPNGIIVIKDNMAQEG---VILDDVDSSV 201
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 2e-11
Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 39/197 (19%)
Query: 51 VNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCG 110
N +D W ++ + + +E +E L + KS VL+ G G
Sbjct: 5 FNGLFD--------EWAHTYDSFVQGEDIQYKEVFAHYEDILED-VVNKSFGNVLEFGVG 55
Query: 111 IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170
G ++ + +V G+ + KE + + + DF+ S D
Sbjct: 56 TGNLTNKLLL-AGRTVYGIEPSREMRMIAKE--KLPK---EFSITEGDFLSFEV-PTSID 108
Query: 171 AVYAIEATCHAPDA------AEIE----------IGDG-LPDIRSTRKCLEALKQAGFEV 213
+ + A H D A+ D D + K +EA KQ GF
Sbjct: 109 TIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQ 168
Query: 214 IWEKDLAPDSPLPWYLP 230
+ + Y
Sbjct: 169 LA------NDLQTEYYT 179
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 4e-11
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 28/146 (19%)
Query: 30 EKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHE 89
+K H + + R + D + + YD + ++ R G L E
Sbjct: 4 DKIHH-HHHHMKLRSWEFYDRIARAYDSMYETPKWKLYH------RLIGSFLEE------ 50
Query: 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD 149
LK+ +VLD+G G G + + V ++ ++ + +E
Sbjct: 51 -------YLKNPCRVLDLGGGTGKWSLFLQE-RGFEVVLVDPSKEMLEVAREKGV----- 97
Query: 150 KTCNFVKADFMKMPFPDNSFDAVYAI 175
N V+A +PFP +F+AV A+
Sbjct: 98 --KNVVEAKAEDLPFPSGAFEAVLAL 121
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 1e-10
Identities = 23/211 (10%), Positives = 61/211 (28%), Gaps = 14/211 (6%)
Query: 40 EEERKANYTDMVNKYYDLVTSFYEFGWGESF-HFAPRWKGESLRESIKRHEHFLALQ--- 95
++ + ++ K+Y + E + W+ R+ L +
Sbjct: 58 DDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL 117
Query: 96 LGLKSGQKVLDVGCGIGG-PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNF 154
+ G++ + +G G ++ V + +++ GVD N
Sbjct: 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDG-VNV 176
Query: 155 VKADFMKMPFPDNSFDAVYAIEATCHAPDAAEI--EIGDGL-PDIRSTRKCLEALKQAGF 211
+ D + + FD + A + I + + R + ++ +
Sbjct: 177 ITGDETVIDGLE--FDVLM---VAALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILY 231
Query: 212 EVIWEKDLAPDSPLPWYLPLDTSHFSLSSFR 242
+ + D+ LP + +
Sbjct: 232 APVSDDDITGFRRAGVVLPSGKVNNTSVLVF 262
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-10
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 8/118 (6%)
Query: 71 HFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLN 130
++A RW+ + + G K+LD GCG G +++ V G +
Sbjct: 18 NYAQRWR-NLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSK-QGHDVLGTD 75
Query: 131 NNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIE 188
+ I K+ F +V D + FD + + E
Sbjct: 76 LDPILIDYAKQ--DFPEAR----WVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGRE 127
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 3e-10
Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 22/151 (14%)
Query: 65 GWGESFHFAPR-------WKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLRE 117
++ R W+ + +RH L L L + L++GC G +
Sbjct: 9 SVDNTYQSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEK 68
Query: 118 IAQFSSTSVTGLNNNEYQITRGKE-LNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176
+A +T ++ I R + R++ + + D ++ FD + E
Sbjct: 69 LAP-HCKRLTVIDVMPRAIGRACQRTKRWSHIS----WAATDILQFS-TAELFDLIVVAE 122
Query: 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALK 207
+ D ++ + ++ L
Sbjct: 123 VLYYLEDMTQMR--------TAIDNMVKMLA 145
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 4e-10
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 17/141 (12%)
Query: 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ--FSSTSVTGLNNNEYQITRGKELNRF 145
H L + + K LD+GCG G +A + V + N I + +
Sbjct: 21 HSEVLEA-VKVVKPGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSI 76
Query: 146 AGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEA 205
+D + D + F D +D + + +P +
Sbjct: 77 ENLDN-LHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKT-------IPGL--IANMQRC 125
Query: 206 LKQAGFEVIWEKDLAPDSPLP 226
K G+ +I D P
Sbjct: 126 TKPGGYNLIVAAMDTADYPCT 146
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 9e-10
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 7/115 (6%)
Query: 71 HFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLN 130
A + + L VL++ G G R ++ + VT L+
Sbjct: 17 ARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSG-LADRVTALD 75
Query: 131 NNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAA 185
+ I G+D F + D PD +DAV+ H PD
Sbjct: 76 GSAEMI----AEAGRHGLDN-VEFRQQDLFDWT-PDRQWDAVFFAHWLAHVPDDR 124
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 9e-10
Identities = 25/138 (18%), Positives = 39/138 (28%), Gaps = 25/138 (18%)
Query: 49 DMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVG 108
DM + D FY + E R L +G K+L++G
Sbjct: 4 DMTQAFDDDTLRFYR------------GNATAYAERQPRSATLTKFLGELPAGAKILELG 51
Query: 109 CGIGGPLREIAQ--FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166
CG G + F V + + F ++ D
Sbjct: 52 CGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLG-------RPVRTMLFHQLDAID 101
Query: 167 NSFDAVYAIEATCHAPDA 184
++DAV+A H P
Sbjct: 102 -AYDAVWAHACLLHVPRD 118
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 1e-09
Identities = 26/159 (16%), Positives = 48/159 (30%), Gaps = 16/159 (10%)
Query: 70 FHFAPRWKGESLRESIKRHEHF-LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTG 128
F + + ++ H + + S KVLD+GCG G ++ VT
Sbjct: 89 LGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY-DVTS 147
Query: 129 LNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIE 188
++NE I E ++ + D ++D + +
Sbjct: 148 WDHNENSIAFLNETKEKENLN--ISTALYDINAANIQ-ENYDFIVSTVVFMFLNR----- 199
Query: 189 IGDGLPDIRST-RKCLEALKQAGFEVIWEKDLAPDSPLP 226
+ S + E G+ +I D P P
Sbjct: 200 -----ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP 233
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 36/158 (22%), Positives = 56/158 (35%), Gaps = 25/158 (15%)
Query: 87 RHEHFLAL--QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNR 144
++ L L + G+ +LD+GCG G +IAQ S V G +N I + ++
Sbjct: 42 VWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQ--N 98
Query: 145 FAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEI--EIGDGL--------- 193
+ + F AD D DAV++ + I L
Sbjct: 99 YPHLH----FDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAE 153
Query: 194 -PDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLP 230
+ + LEAL A + P + PWY P
Sbjct: 154 FGGKGNIKYILEALYNA---LETLGIHNPQALNPWYFP 188
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-09
Identities = 26/199 (13%), Positives = 56/199 (28%), Gaps = 38/199 (19%)
Query: 45 ANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKV 104
+N + + YD + + W L L L L +V
Sbjct: 1 SNAMNHSRESYDRLARELG-------GYRHPWA-RVLSGPDPELTFDLWLSRLLTPQTRV 52
Query: 105 LDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM-KMP 163
L+ GCG G ++ + + + + D + + ++P
Sbjct: 53 LEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARA--NAPHAD----VYEWNGKGELP 105
Query: 164 FPDNS-FDAVYAIEATCHA---------PDA--AEIEIGDGLPDIRSTRKCLEALKQAGF 211
+ F + + PDA + +P++ E L G+
Sbjct: 106 AGLGAPFGLIVSRRGPTSVILRLPELAAPDAHFLYVGPRLNVPEVP------ERLAAVGW 159
Query: 212 EVIWEKDLAPDSPLPWYLP 230
+++ E + + P
Sbjct: 160 DIVAE----DHVSVLAHAP 174
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-09
Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 87 RHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQIT----RGKE 141
R + L + ++V+D+GCG G L+ + + +TG++ + + R
Sbjct: 17 RMN-GVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDR 75
Query: 142 LNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDA 184
L + ++ + +DA IE H +
Sbjct: 76 LRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLS 118
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-08
Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 14/145 (9%)
Query: 41 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKS 100
E N D + + + H A + + ++I + +
Sbjct: 3 EPIMRNPEDALLDSWHQNAQAW---IDAVRHGAIESRRQVTDQAILLA-------ILGRQ 52
Query: 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM 160
++VLD+GCG G LR +A G++ + + + AG ++ +
Sbjct: 53 PERVLDLGCGEGWLLRALAD-RGIEAVGVDGDRTLVDAARA--AGAGEVHLASYAQLA-E 108
Query: 161 KMPFPDNSFDAVYAIEATCHAPDAA 185
+D + A A H
Sbjct: 109 AKVPVGKDYDLICANFALLHQDIIE 133
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 2e-08
Identities = 31/156 (19%), Positives = 51/156 (32%), Gaps = 17/156 (10%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNF 154
L G + L GCG G + +A V GL+ +E + + E + + +F
Sbjct: 62 TSSLPLG-RALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSF 119
Query: 155 VKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAG--FE 212
VK D P FD ++ C + E LK G
Sbjct: 120 VKEDVFTWR-PTELFDLIFDYVFFCAIEPE---------MRPAWAKSMYELLKPDGELIT 169
Query: 213 VIWEKDLAPDSPLPWYLPLDT--SHFSLSSFRLTSV 246
+++ P P+ + + T F+ SV
Sbjct: 170 LMYPITDHVGGP-PYKVDVSTFEEVLVPIGFKAVSV 204
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 3e-08
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158
VLD+GCG G A + GL+ ++ I + F A
Sbjct: 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVAS 138
Query: 159 FMKMPFPDNSFDAVYAIEATCHAPDAAEI 187
++PF D S DA+ I A C A + A +
Sbjct: 139 SHRLPFSDTSMDAIIRIYAPCKAEELARV 167
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 6e-08
Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK 150
FL K+L + G G +A VT ++ + + + K+L + GV
Sbjct: 20 FLVSVANQIPQGKILCLAEGEGRNACFLAS-LGYEVTAVDQSSVGLAKAKQLAQEKGVK- 77
Query: 151 TCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAG 210
V+++ ++++ + +I + ++ K + LK G
Sbjct: 78 -ITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLY-----------PKVYQGLKPGG 125
Query: 211 ---FEVIWEKDLAPDSPLP 226
E + L ++ P
Sbjct: 126 VFILEGFAPEQLQYNTGGP 144
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 6e-08
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 6/125 (4%)
Query: 66 WGESFHF--APRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSS 123
W ++ W R +L ++D CG G + ++QF
Sbjct: 23 WNKTLVNSTPVLWDANVERAV---VVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP 79
Query: 124 TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD 183
V GL+ ++ + + N A + DA + H
Sbjct: 80 -RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIP 138
Query: 184 AAEIE 188
+ E
Sbjct: 139 VEKRE 143
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 1e-07
Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA 157
++ G+++ D+GCG G +A VTG++ +E + +E +F
Sbjct: 31 VEPGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNRH--VDFWVQ 86
Query: 158 DFMKMPFPDNSFDAVYAIEATCHAPDAAEIE 188
D ++ P+ ++ + A+++
Sbjct: 87 DMRELELPEPVDAITILCDSLNYLQTEADVK 117
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 37/197 (18%), Positives = 70/197 (35%), Gaps = 28/197 (14%)
Query: 51 VNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCG 110
+ + Y L+ +Y+ + + + E K + ++VLD+ CG
Sbjct: 1 MYELYTLLAEYYDTIYRRRIERVKAE-IDFVEEIFKED--------AKREVRRVLDLACG 51
Query: 111 IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170
G P E+A+ V GL+ +E + + + + F++ D +++ F + FD
Sbjct: 52 TGIPTLELAERGYE-VVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEIAFKN-EFD 107
Query: 171 AVYAI-EATCHAPDAAEIEIGDGLPDIRST-RKCLEALKQAG---FEVIWEKDLAPDSPL 225
AV + + D+R K EALK G + D P+
Sbjct: 108 AVTMFFSTIMYFDE----------EDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPV 157
Query: 226 PWYLPLDTSHFSLSSFR 242
W + +R
Sbjct: 158 VWNEQKGEEKLVIMDWR 174
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 9e-07
Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 6/128 (4%)
Query: 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAG 147
H +++ +K G V+D CG G +A + V G + + I +
Sbjct: 13 HDY-IKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN 71
Query: 148 VDKTCNFVKADFMKMP-FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEAL 206
+ +K M + D AV + D + + I++ K +E L
Sbjct: 72 LIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETT--IQALSKAMELL 129
Query: 207 KQAGFEVI 214
G +
Sbjct: 130 VTGGIITV 137
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 1e-06
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 15/123 (12%)
Query: 68 ESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTS 125
E+ F P S +R E + + S ++D GCG G L + + S +
Sbjct: 697 EAAFFKPPL-------SKQRVE-YALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQT 748
Query: 126 VTGLNNNEYQITRGKE-----LNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180
+ G++ + + R + LN+ A K+ ++ + D +E H
Sbjct: 749 IIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEH 808
Query: 181 APD 183
+
Sbjct: 809 MEE 811
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFV 155
L L+ G +LD+GCG G +R +V GL +E Q K + +
Sbjct: 68 LNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVR 127
Query: 156 KADFMKMPFPDNSFDAVYAIEATCHAPDAAE 186
+ + D D + ++ A H D A
Sbjct: 128 IQGWEEF---DEPVDRIVSLGAFEHFADGAG 155
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 87 RHEHFLAL--QLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELN 143
R L Q+ L+ D+GCG G + + +TG+++++ + + +
Sbjct: 18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAAD-- 75
Query: 144 RFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD 183
R + F KAD P D +YA PD
Sbjct: 76 RLPNTN----FGKADLATWK-PAQKADLLYANAVFQWVPD 110
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFV 155
LGL+ G +LDVGCG G + + +V GL ++ Q ++L + ++ +
Sbjct: 60 LGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVL 119
Query: 156 KADFMKMPFPDNSFDAVYAIEATCH 180
A + + D D + +I A H
Sbjct: 120 LAGWEQF---DEPVDRIVSIGAFEH 141
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 2e-06
Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 10/134 (7%)
Query: 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTS--VTGLNNNEYQITRGKELNRFAGV 148
++ ++ GL+ G +L+VG G G I + +T + +E + + +
Sbjct: 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 160
Query: 149 DKTCNFVKADFMKMPFPDNSFDAVY-----AIEATCHAPDA--AEIEIGDGLPDIRSTRK 201
++D D +DAV LP+ + K
Sbjct: 161 IGNVRTSRSDIADF-ISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEK 219
Query: 202 CLEALKQAGFEVIW 215
+ +L +G +
Sbjct: 220 TVLSLSASGMHHLE 233
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-06
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 86 KRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSS-TSVTGLNNNEYQITRGKELNR 144
+R +A+ L + +KV+D+GCG G L + + S +TG++ + + R K+ +
Sbjct: 16 QRLGTVVAV-LKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK 74
Query: 145 FAGVD----KTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDA 184
+ K + ++ + + +DA IE H +
Sbjct: 75 IDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDEN 118
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 5e-06
Identities = 39/225 (17%), Positives = 66/225 (29%), Gaps = 48/225 (21%)
Query: 53 KYYDLVTSFYEFGWGESFHFAP--RWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCG 110
KY + SF F S + + L I R KS K+L +G G
Sbjct: 14 KYVE---SFRRF-LNHSTEHQCMQEFMDKKLPGIIGRIGDT-------KSEIKILSIGGG 62
Query: 111 IGGPLREIAQF-------SSTSVTGLNNNEYQITRGKEL----NRFAGVDKTCNFVKADF 159
G +I + + + QI + KEL + V + +
Sbjct: 63 AGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSE 122
Query: 160 MKMP----FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRK------CLEALKQA 209
+ +D ++ I+ + D I L S + +
Sbjct: 123 YQSRMLEKKELQKWDFIHMIQMLYYVKD-----IPATLKFFHSLLGTNAKMLIIVVSGSS 177
Query: 210 GFEVIWEK--DLAPDSPLPWYLP-------LDTSHFSLSSFRLTS 245
G++ +W+K P L Y+ LD + L S
Sbjct: 178 GWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLS 222
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 6e-06
Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 27/180 (15%)
Query: 68 ESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVT 127
++F K RE +K K ++VLD+GCG G L +
Sbjct: 11 SDYYFLFEEKFRGSRELVKAR--LRRYIPYFKGCRRVLDIGCGRGEFLELCKEE-GIESI 67
Query: 128 GLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAVYAIEATCHAPDAA 185
G++ NE I + N VK+D ++ PD D V H
Sbjct: 68 GVDINEDMIKFCE---------GKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP-- 116
Query: 186 EIEIGDGLPDIRST-RKCLEALKQAGFEVIWEKDLA-PDSPLPWYLPLD-TSHFSLSSFR 242
+ C +K + + VI + S + +Y+ + +
Sbjct: 117 --------ERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLK 168
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 67 GESFHFAPRWKGE--SLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124
SL + + L + G +VLD G G E A
Sbjct: 171 ERPLSRRFPKAALRGSLTPVLAQ---ALLRLADARPGMRVLDPFTGSGTIALEAASTLGP 227
Query: 125 S--VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172
+ V + +E ++ +E +G+ F++AD +P D +
Sbjct: 228 TSPVYAGDLDEKRLGLAREAALASGLSW-IRFLRADARHLPRFFPEVDRI 276
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158
K ++VLD+GC G L + + T V+G+ + KE +
Sbjct: 31 KEWKEVLDIGCS-SGALGAAIKENGTRVSGIEAFPEAAEQAKEKL------DHVVLGDIE 83
Query: 159 FMKMPFPDNSFDAV 172
M MP+ + FD V
Sbjct: 84 TMDMPYEEEQFDCV 97
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 30/182 (16%)
Query: 94 LQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVD-K 150
+ + ++DVGCG G ++AQ + G + + I + + + K
Sbjct: 30 DEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYK 89
Query: 151 TCNFVKADFMKMPF------PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE 204
+F + F D + A+E H D + R
Sbjct: 90 NVSFKISSSDDFKFLGADSVDKQKIDMITAVEC-AHWFDFE-----------KFQRSAYA 137
Query: 205 ALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSV------GRFVTRNMVKAL 258
L++ G IW D P Y D + + GR RNM+K
Sbjct: 138 NLRKDGTIAIWGYA---DPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDS 194
Query: 259 EF 260
Sbjct: 195 HL 196
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-05
Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 10/136 (7%)
Query: 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGV 148
+ G+ G +++ G G G +A V E E ++AG
Sbjct: 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF 143
Query: 149 DKTCNFVKADFMKMPFPDNSFDAVYAI-----EATCHAPDA--AEIEIGDGLPDIRSTRK 201
D D + + D V HA A P +
Sbjct: 144 DDRVTIKLKDIY-EGIEEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMR 202
Query: 202 CLEALKQAGFEVIWEK 217
E L++ + +
Sbjct: 203 LHEKLREFKDYFMKPR 218
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-05
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNF 154
+L LK G +LD+GCG G +R + +V GL ++ Q R +++ +++
Sbjct: 85 KLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQV 144
Query: 155 VKADFMKMPFPDNSFDAVYAIEA 177
+ + D + +IEA
Sbjct: 145 LLQGWEDF---AEPVDRIVSIEA 164
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 3e-05
Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 14/140 (10%)
Query: 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKE--LNRFA 146
+ + + G +VL+ G G G + + + V + +
Sbjct: 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG 149
Query: 147 GVDKTCNFVKADFMKMPFPDNSFDAVY-----AIEATCHAPDA--AEIEIGDGLPDIRST 199
V +D PD S D E A + + +
Sbjct: 150 QPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQL 209
Query: 200 RKCLEALKQAGFEV---IWE 216
+ +EAL+ WE
Sbjct: 210 SRIVEALRAKQCWTEPRAWE 229
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 4e-05
Identities = 14/77 (18%), Positives = 27/77 (35%)
Query: 94 LQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCN 153
L + +KVL + G G L + + + + I RG E
Sbjct: 42 TFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTK 101
Query: 154 FVKADFMKMPFPDNSFD 170
+ K D+++ ++F
Sbjct: 102 YYKFDYIQETIRSDTFV 118
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 8e-05
Identities = 16/146 (10%), Positives = 43/146 (29%), Gaps = 28/146 (19%)
Query: 46 NYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVL 105
Y + Y L+ + ++ + + I L
Sbjct: 2 CYNKFAHIYDKLIRADVDY--------------KKWSDFIIEK-----CVENNLVFDDYL 42
Query: 106 DVGCGIGGPLREIAQ--FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP 163
D+ CG G + + ++ ++ ++ + R G+ D +
Sbjct: 43 DLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLK--PRLACQDISNLN 97
Query: 164 FPDNSFDAVYAI-EATCHAPDAAEIE 188
FD + ++T + D+ +++
Sbjct: 98 IN-RKFDLITCCLDSTNYIIDSDDLK 122
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 8e-05
Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 26/154 (16%)
Query: 36 YGGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQ 95
+ +A+Y+ + + YDLV + L ++RH
Sbjct: 3 HSSATAGPQADYSGEIAELYDLVHQGKGKDYHREAAD--------LAALVRRH------- 47
Query: 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFV 155
+LDV CG G LR +A S +V GL + + + N
Sbjct: 48 --SPKAASLLDVACGTGMHLRHLAD-SFGTVEGLELSADMLAIARRRN------PDAVLH 98
Query: 156 KADFMKMPFPDNSFDAVYAIEAT-CHAPDAAEIE 188
D F AV + ++ H AE++
Sbjct: 99 HGDMRDFSLG-RRFSAVTCMFSSIGHLAGQAELD 131
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 9e-05
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 94 LQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKE------LNRFAG 147
++ K VLD+GCG GG L + + + + + + + ++ R +
Sbjct: 28 VRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSE 87
Query: 148 VDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179
+ F+ AD K D D +
Sbjct: 88 YIFSAEFITADSSKELLIDKFRDPQMCFDICS 119
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 2e-04
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 2/100 (2%)
Query: 82 RESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGK 140
R L+ G+ VLD+GC +G IA + + + GL+ + I +
Sbjct: 28 RNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR 87
Query: 141 ELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180
+ R ++ P + + +C
Sbjct: 88 QNIRHYLSEELR-LPPQTLEGDPGAEGEEGTTTVRKRSCF 126
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 33/129 (25%)
Query: 103 KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM 162
V D GCG + ++ F D ++
Sbjct: 70 VVADFGCGDC--------------------RLASSIRNPVHCFDLASLDPRVTVCDMAQV 109
Query: 163 PFPDNSFDAVYAIEAT--CHAPDA-AEIE----------IGDGLPDIRSTRKCLEALKQA 209
P D S D + + D E + + R L A+ +
Sbjct: 110 PLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKL 169
Query: 210 GFEVIWEKD 218
GF+++ +
Sbjct: 170 GFKIVSKDL 178
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 26/187 (13%), Positives = 48/187 (25%), Gaps = 38/187 (20%)
Query: 47 YTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLD 106
D YDL + + + ++ +LD
Sbjct: 5 EVDHA-DVYDLFYLGRGKDYAAEASD--------IADLVRSR---------TPEASSLLD 46
Query: 107 VGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166
V CG G L + GL +E +T ++ + D
Sbjct: 47 VACGTGTHLEHFTK-EFGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLG- 98
Query: 167 NSFDAVYAI-EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAG---FEVIWEKDLAPD 222
F AV ++ + + E+ + E L+ G E W + D
Sbjct: 99 RKFSAVVSMFSSVGYLKTTEELG--------AAVASFAEHLEPGGVVVVEPWWFPETFAD 150
Query: 223 SPLPWYL 229
+ +
Sbjct: 151 GWVSADV 157
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 3e-04
Identities = 22/140 (15%), Positives = 33/140 (23%), Gaps = 23/140 (16%)
Query: 38 GEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLG 97
+ + Y + Y E A + G
Sbjct: 35 DVLLASVGERGVLCDFYDEGAADTYR-----DLIQDADGTSE---------AREFATRTG 80
Query: 98 LKSGQKVLDVGCGIGGPLREIAQ--FSSTSVTGLNNNEY--QITRGKELNRFAGVDKTCN 153
SG VL++ G+G + VT L + R + A V C
Sbjct: 81 PVSG-PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCT 136
Query: 154 FVKADFMKMPFPDNSFDAVY 173
V+ D F V
Sbjct: 137 LVQGDMSAFALD-KRFGTVV 155
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 12/109 (11%), Positives = 30/109 (27%), Gaps = 7/109 (6%)
Query: 75 RWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEY 134
K + H + +L++G G + + + +T + +E
Sbjct: 17 GHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEE 75
Query: 135 QITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD 183
I+ + ++ + F +D + H D
Sbjct: 76 AISHAQGRL-----KDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDD 118
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 5e-04
Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 18/130 (13%)
Query: 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQ--FSSTSVTGLNNNEYQITRGKELNRFAGV 148
+L L +VLDV CG G + + F SVT ++ ++ + +
Sbjct: 48 WLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRK 104
Query: 149 DKT---CNFVKADFMKMP---FPDNSFDAVYAI-EATCHAPDAAEIEIGDGLPDIRST-R 200
+ +A+++ + + FDAV + + H PD+ + + R +
Sbjct: 105 EPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQ-----SEHRLALK 159
Query: 201 KCLEALKQAG 210
++ G
Sbjct: 160 NIASMVRPGG 169
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 8e-04
Identities = 41/280 (14%), Positives = 81/280 (28%), Gaps = 84/280 (30%)
Query: 40 EEERKANYTDMVNKYYD------LVTSFYEFG----WGESFHFAPRWKGESLRESIKRHE 89
EE + NY +++ ++T Y + ++ FA ++ R +
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--------NVSRLQ 135
Query: 90 HFLALQLGLKSGQKVLDVG-CGIGGPLREIAQFSSTSVTGLNNNEYQITRGKE-LNRFAG 147
+L L+ L + +V G+ G GK +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGS------------------------GKTWV----- 166
Query: 148 VDKTCNFVKADFMKMPFP--------DNSFDAVYAI-EATCHAPDAAEIEIGDGLPDIRS 198
C K KM F NS + V + + + D D +I+
Sbjct: 167 ALDVCLSYKVQ-CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 199 TRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLD-------TSHFSLSSFRLTSVGRFVT 251
+ +++ ++ K + L L + F+LS L T
Sbjct: 226 R---IHSIQAELRRLLKSKPY-ENC----LLVLLNVQNAKAWNAFNLSCKIL-----LTT 272
Query: 252 RNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIF 291
R + +F+ + L+ + L K +
Sbjct: 273 RF-KQVTDFLS----AATTTHISLDHHSMTLTPDEVKSLL 307
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 305 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.92 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.92 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.91 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.9 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.89 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.87 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.87 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.86 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.86 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.86 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.86 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.85 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.85 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.84 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.84 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.83 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.83 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.83 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.83 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.83 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.83 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.82 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.82 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.82 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.82 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.82 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.81 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.81 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.81 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.8 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.8 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.8 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.8 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.8 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.8 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.8 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.79 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.79 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.79 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.79 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.78 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.78 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.78 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.78 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.78 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.78 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.78 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.78 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.77 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.77 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.77 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.77 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.77 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.77 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.77 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.77 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.76 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.76 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.76 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.76 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.76 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.76 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.75 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.75 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.74 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.74 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.74 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.74 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.73 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.73 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.73 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.73 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.73 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.72 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.71 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.71 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.71 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.71 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.71 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.71 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.71 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.71 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.71 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.71 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.71 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.71 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.7 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.7 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.7 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.7 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.7 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.69 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.69 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.69 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.69 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.69 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.69 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.68 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.68 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.68 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.67 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.67 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.67 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.67 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.67 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.67 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.67 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.67 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.66 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.66 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.66 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.66 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.66 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.65 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.65 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.65 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.65 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.65 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.64 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.64 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.64 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.64 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.63 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.63 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.63 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.63 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.63 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.63 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.62 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.62 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.62 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.62 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.62 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.62 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.62 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.62 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.62 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.62 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.62 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.62 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.62 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.62 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.61 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.61 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.61 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.61 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.61 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.61 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.61 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.61 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.61 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.6 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.6 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.6 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.6 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.6 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.59 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.59 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.59 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.58 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.58 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.58 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.58 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.58 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.57 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.57 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.57 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.57 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.56 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.56 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.56 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.56 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.56 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.55 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.55 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.55 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.55 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.54 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.54 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.54 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.54 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.53 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.53 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.53 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.53 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.53 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.52 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.52 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.52 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.52 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.52 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.51 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.51 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.51 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.5 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.5 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.49 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.49 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.48 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.48 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.47 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.46 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.46 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.46 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.45 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.45 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.44 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.44 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.44 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.44 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.44 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.43 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.43 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.43 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.43 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.42 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.42 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.41 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.41 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.41 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.39 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.39 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.38 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.38 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.38 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.38 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.37 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.37 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.37 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.37 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.36 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.36 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.36 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.36 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.35 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.35 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.34 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.34 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.34 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.33 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.33 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.33 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.32 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.31 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.31 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.29 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.28 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.28 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.27 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.26 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.25 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.25 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.25 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.24 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.24 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.2 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.19 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.15 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.14 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.14 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.08 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.05 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.03 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.03 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.03 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.02 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.02 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.01 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.01 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.98 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.97 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.91 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.88 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.85 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.82 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.76 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.73 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.66 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.66 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.66 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.62 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.56 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.53 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.47 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.47 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.44 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.4 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.4 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.28 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.25 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.2 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.16 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.15 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.11 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.01 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.94 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.82 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.56 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.42 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.41 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.18 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.11 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.68 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.6 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.42 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.34 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.2 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.07 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.97 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.86 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.83 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.83 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.78 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.73 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 95.67 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.66 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.6 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.57 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.45 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.36 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.29 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.13 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.04 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.98 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.93 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 94.92 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.87 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.79 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.73 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.66 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.65 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.54 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.51 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.46 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.46 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 94.41 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.38 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 94.28 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.91 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.91 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.78 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.7 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 93.63 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.52 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 93.41 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 93.41 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 93.32 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.25 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 92.97 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 92.95 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 92.87 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 92.72 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 92.71 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.7 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.68 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 92.6 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 92.5 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 92.49 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 92.48 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 92.45 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 92.36 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.14 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 91.77 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 91.49 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 91.43 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 90.84 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 90.6 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 90.11 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 90.06 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 89.87 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.0 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 88.86 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 88.6 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 88.45 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 88.38 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 88.26 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 88.05 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 87.84 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 87.72 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 87.36 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 87.21 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 86.68 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 86.4 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 85.74 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 85.73 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 85.55 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 85.46 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 84.83 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 84.54 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 84.43 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 83.82 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 83.67 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 83.6 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 83.48 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 83.16 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 82.98 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 82.89 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 82.7 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 82.44 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 81.88 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 80.45 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=178.98 Aligned_cols=182 Identities=14% Similarity=0.137 Sum_probs=128.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
++++.+|||||||||..+..+++. ++++|+|+|+|+.|++.|++++...+...+++++++|+.++|++ .||+|++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~ 145 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 145 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--cccccee
Confidence 568899999999999999999864 46799999999999999999998888777899999999988764 5999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccc-------cccccchhH
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSL-------SSFRLTSVG 247 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g 247 (305)
..+++|+++.+... ++++++++|||||.+++.+....... .....+..+ .++....+.
T Consensus 146 ~~~l~~~~~~~~~~---------~l~~i~~~LkpGG~lii~e~~~~~~~------~~~~~~~~~~~~~~~~~g~s~~ei~ 210 (261)
T 4gek_A 146 NFTLQFLEPSERQA---------LLDKIYQGLNPGGALVLSEKFSFEDA------KVGELLFNMHHDFKRANGYSELEIS 210 (261)
T ss_dssp ESCGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEEEBCCSSH------HHHHHHHHHHHHHHHHTTGGGSTTH
T ss_pred eeeeeecCchhHhH---------HHHHHHHHcCCCcEEEEEeccCCCCH------HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999998776533 69999999999999999875332110 000000000 000000000
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcCCC
Q 042544 248 RFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQH 304 (305)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp~~ 304 (305)
.. ...++ ..+.|.+.+++..+++++||..++.. --+.....++|+||..
T Consensus 211 --~~---~~~l~-~~~~~~s~~~~~~~L~~AGF~~ve~~--fq~~nF~~~iA~K~~~ 259 (261)
T 4gek_A 211 --QK---RSMLE-NVMLTDSVETHKARLHKAGFEHSELW--FQCFNFGSLVALKAED 259 (261)
T ss_dssp --HH---HHHHH-HHCCCBCHHHHHHHHHHHTCSEEEEE--EEETTEEEEEEECCTT
T ss_pred --HH---Hhhhc-ccccCCCHHHHHHHHHHcCCCeEEEE--EEeccEEEEEEEEcCC
Confidence 00 01111 12456777889999999999766521 1122344589999974
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-24 Score=182.44 Aligned_cols=159 Identities=34% Similarity=0.574 Sum_probs=125.9
Q ss_pred HHHHHHHhhhHHHHHhhcCCccccccCCCC----ccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCC
Q 042544 49 DMVNKYYDLVTSFYEFGWGESFHFAPRWKG----ESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124 (305)
Q Consensus 49 ~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 124 (305)
+.++++||..+++|+..+++.++++ .|.. ..+.++.....+.+...+.+.++.+|||||||+|.++..+++..+.
T Consensus 7 ~~~~~~Yd~~~~~y~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 85 (273)
T 3bus_A 7 EEVRQMYDDFTDPFARIWGENLHFG-YWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDV 85 (273)
T ss_dssp ----------------CCGGGCCCC-CCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCC
T ss_pred HHHHHHHcchHHHHHHHcCCCceEE-ecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCC
Confidence 4577889999999998888877663 3432 4677888888888888999889999999999999999999965588
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHH
Q 042544 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE 204 (305)
Q Consensus 125 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (305)
+|+|+|+|+.+++.+++++...++.++++++++|+.++|+++++||+|++..+++|+++... +++++.+
T Consensus 86 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~-----------~l~~~~~ 154 (273)
T 3bus_A 86 RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGR-----------ALREMAR 154 (273)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHH-----------HHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHH-----------HHHHHHH
Confidence 99999999999999999998888877899999999999998899999999999999998865 6999999
Q ss_pred HHHhCCceEEEeccC
Q 042544 205 ALKQAGFEVIWEKDL 219 (305)
Q Consensus 205 ~L~~gG~~~i~~~~~ 219 (305)
+|+|||.+++.+...
T Consensus 155 ~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 155 VLRPGGTVAIADFVL 169 (273)
T ss_dssp TEEEEEEEEEEEEEE
T ss_pred HcCCCeEEEEEEeec
Confidence 999999999987543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=179.58 Aligned_cols=164 Identities=30% Similarity=0.480 Sum_probs=138.6
Q ss_pred hhHHHHHHHHHhhh--HHHHHhhcC-CccccccCCC----CccHHHHHHHHHHHHHHHc----CCCCCCeEEEEcCCCCh
Q 042544 45 ANYTDMVNKYYDLV--TSFYEFGWG-ESFHFAPRWK----GESLRESIKRHEHFLALQL----GLKSGQKVLDVGCGIGG 113 (305)
Q Consensus 45 ~~~~~~~~~~yd~~--~~~y~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~----~~~~~~~vLDiGcG~G~ 113 (305)
....+.+.++||.. .++|+..|+ +.++++ .|. ...+........+.+...+ .+.++.+|||||||+|.
T Consensus 17 ~~~~~~~~~~Yd~~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~ 95 (297)
T 2o57_A 17 KTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVG-LYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGG 95 (297)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHTTSCCCSC-CCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSH
T ss_pred HHHHHHHHHHcCCccchhHHHHHhCCCceEEE-ecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCH
Confidence 34456788899986 489988775 455553 343 4467777888888888877 88899999999999999
Q ss_pred HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCC
Q 042544 114 PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGL 193 (305)
Q Consensus 114 ~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~ 193 (305)
++..+++..+.+|+|+|+|+.+++.|+++....++..+++++++|+.++|+++++||+|++..+++|++++..
T Consensus 96 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~------- 168 (297)
T 2o57_A 96 AARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLK------- 168 (297)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHH-------
T ss_pred HHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHH-------
Confidence 9999996547899999999999999999998888877899999999999998999999999999999999755
Q ss_pred CCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 194 PDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 194 ~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+++++.++|+|||.+++.+....
T Consensus 169 ----~l~~~~~~LkpgG~l~~~~~~~~ 191 (297)
T 2o57_A 169 ----VFQECARVLKPRGVMAITDPMKE 191 (297)
T ss_dssp ----HHHHHHHHEEEEEEEEEEEEEEC
T ss_pred ----HHHHHHHHcCCCeEEEEEEeccC
Confidence 69999999999999999876443
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-23 Score=177.98 Aligned_cols=168 Identities=19% Similarity=0.265 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHhhhHHHHHhhcCCccccccC-CC--CccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh
Q 042544 45 ANYTDMVNKYYDLVTSFYEFGWGESFHFAPR-WK--GESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF 121 (305)
Q Consensus 45 ~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 121 (305)
..-.+.++++||..+++|+..++....++.. |. ...+.++.....+.+...+.+.++.+|||||||+|.++..+++.
T Consensus 14 ~~~~~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~ 93 (302)
T 3hem_A 14 KPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAE 93 (302)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHh
Confidence 3446789999999999999999987776544 32 34677888888888888888999999999999999999999965
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCC-CcccHH
Q 042544 122 SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLP-DIRSTR 200 (305)
Q Consensus 122 ~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~-~~~~l~ 200 (305)
.+.+|+|+|+|+.+++.|++++...++..+++++++|+.++ +++||+|++..+++|++++.... +.. ...+++
T Consensus 94 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~---~~~~~~~~l~ 167 (302)
T 3hem_A 94 YDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDA---GFERYDTFFK 167 (302)
T ss_dssp HCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCC---CTTHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHHhcCcccccc---chhHHHHHHH
Confidence 46899999999999999999999988877899999999876 68899999999999998762000 000 012699
Q ss_pred HHHHHHHhCCceEEEecc
Q 042544 201 KCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 201 ~~~~~L~~gG~~~i~~~~ 218 (305)
++.++|+|||.+++.+..
T Consensus 168 ~~~~~LkpgG~l~i~~~~ 185 (302)
T 3hem_A 168 KFYNLTPDDGRMLLHTIT 185 (302)
T ss_dssp HHHHSSCTTCEEEEEEEE
T ss_pred HHHHhcCCCcEEEEEEEe
Confidence 999999999999998754
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=172.28 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=134.7
Q ss_pred HHHHHHHHhhhHHHHHhhcCCcccccc-CC--CCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCC
Q 042544 48 TDMVNKYYDLVTSFYEFGWGESFHFAP-RW--KGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124 (305)
Q Consensus 48 ~~~~~~~yd~~~~~y~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 124 (305)
.+.++.+||..+++|+..+++..+++. .| ....+.++.....+.+...+.+.++.+|||||||+|.++..+++..+.
T Consensus 9 ~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 88 (287)
T 1kpg_A 9 FANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV 88 (287)
T ss_dssp HHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCHHHHHHhcCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC
Confidence 457899999999999998888766643 34 235677888888888888888889999999999999999999944478
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHH
Q 042544 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE 204 (305)
Q Consensus 125 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (305)
+|+|+|+|+.+++.+++++...+...+++++++|+.++| ++||+|++..+++|+++..... +++++.+
T Consensus 89 ~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~---------~l~~~~~ 156 (287)
T 1kpg_A 89 NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDA---------FFSLAHR 156 (287)
T ss_dssp EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHH---------HHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHH---------HHHHHHH
Confidence 999999999999999999988887778999999998765 7899999999999996433221 6999999
Q ss_pred HHHhCCceEEEeccC
Q 042544 205 ALKQAGFEVIWEKDL 219 (305)
Q Consensus 205 ~L~~gG~~~i~~~~~ 219 (305)
+|+|||.+++.+...
T Consensus 157 ~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 157 LLPADGVMLLHTITG 171 (287)
T ss_dssp HSCTTCEEEEEEEEE
T ss_pred hcCCCCEEEEEEecC
Confidence 999999999987544
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=171.04 Aligned_cols=163 Identities=17% Similarity=0.261 Sum_probs=133.1
Q ss_pred hHHHHHHHHHhhhHHHHHhhcCCccccccC-CC--CccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc
Q 042544 46 NYTDMVNKYYDLVTSFYEFGWGESFHFAPR-WK--GESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS 122 (305)
Q Consensus 46 ~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 122 (305)
.-.+.++++||..+++|+..++...+++.. |. ...+.++.....+.+...+.+.++.+|||||||+|.++..+++..
T Consensus 33 ~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 112 (318)
T 2fk8_A 33 TRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF 112 (318)
T ss_dssp -----CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC
Confidence 345678889999999999888877666433 32 456777777788888888888899999999999999999999654
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHH
Q 042544 123 STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKC 202 (305)
Q Consensus 123 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 202 (305)
+.+|+|+|+|+.+++.|++++...++..+++++++|+.+++ ++||+|++..+++|+++..... +++++
T Consensus 113 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~---------~l~~~ 180 (318)
T 2fk8_A 113 DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDD---------FFKRC 180 (318)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHH---------HHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHH---------HHHHH
Confidence 78999999999999999999988887778999999998764 7899999999999996543322 69999
Q ss_pred HHHHHhCCceEEEeccCC
Q 042544 203 LEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 203 ~~~L~~gG~~~i~~~~~~ 220 (305)
.++|+|||.+++.+....
T Consensus 181 ~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 181 FNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp HHHSCTTCEEEEEEEECC
T ss_pred HHhcCCCcEEEEEEeccC
Confidence 999999999999876543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=161.74 Aligned_cols=115 Identities=21% Similarity=0.250 Sum_probs=103.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..+...+...++ +|||+|||+|.++..+++.++.+|+|+|+|+.+++.|++++...+...+++++++|+.++++++++|
T Consensus 34 ~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 112 (219)
T 3dlc_A 34 ENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYA 112 (219)
T ss_dssp HHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCE
T ss_pred HHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccc
Confidence 444555666666 9999999999999999976678999999999999999999998888778999999999999988999
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++..+++|+++... +++++.++|+|||.+++.+
T Consensus 113 D~v~~~~~l~~~~~~~~-----------~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 113 DLIVSRGSVFFWEDVAT-----------AFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp EEEEEESCGGGCSCHHH-----------HHHHHHHHEEEEEEEEEEE
T ss_pred cEEEECchHhhccCHHH-----------HHHHHHHhCCCCCEEEEEe
Confidence 99999999999988766 5999999999999999975
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=162.38 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=124.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
..++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++...+ +++++++|+.+++++ ++||+|++..
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~-~~fD~v~~~~ 117 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE-EKYDMVVSAL 117 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC-SCEEEEEEES
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC-CCceEEEEeC
Confidence 457789999999999999999954 57899999999999999999875433 799999999998876 8999999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHH-----
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVT----- 251 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----- 251 (305)
+++|++++.... +++++.++|+|||.+++.+....... + ... ........+..
T Consensus 118 ~l~~~~~~~~~~---------~l~~~~~~LkpgG~l~~~~~~~~~~~---~---~~~-------~~~~~~~~~~~~~~~~ 175 (234)
T 3dtn_A 118 SIHHLEDEDKKE---------LYKRSYSILKESGIFINADLVHGETA---F---IEN-------LNKTIWRQYVENSGLT 175 (234)
T ss_dssp CGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEEECBCSSH---H---HHH-------HHHHHHHHHHHTSSCC
T ss_pred ccccCCHHHHHH---------HHHHHHHhcCCCcEEEEEEecCCCCh---h---hhh-------HHHHHHHHHHHhcCCC
Confidence 999998876432 69999999999999999875432110 0 000 00000000000
Q ss_pred -HHHHHHHH-HhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcCC
Q 042544 252 -RNMVKALE-FVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQ 303 (305)
Q Consensus 252 -~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp~ 303 (305)
..+..... .....+.+.+++..+++++||..++. .....+..++.+.|+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~--~~~~~~~~~~~~~~~~ 227 (234)
T 3dtn_A 176 EEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSC--IYKYYQFAVMFGRKTE 227 (234)
T ss_dssp HHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEE--EEEETTEEEEEEECC-
T ss_pred HHHHHHHHHhcccccccCHHHHHHHHHHcCCCceee--eeeecceeEEEEEecc
Confidence 00000000 01234456688999999999998873 2334556678888874
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=165.00 Aligned_cols=161 Identities=11% Similarity=0.060 Sum_probs=123.1
Q ss_pred HHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccC-C---CCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHH
Q 042544 40 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPR-W---KGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPL 115 (305)
Q Consensus 40 ~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~ 115 (305)
.+...+...+.+.++|+....+|+..|+.+++.+.. | ......+........-...+.+.++.+|||||||+|.++
T Consensus 58 ~~~~~~~l~~~~~~~y~~~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~t 137 (298)
T 3fpf_A 58 DDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLT 137 (298)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHH
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCccHHH
Confidence 445677888999999999999999999988754421 0 001111111111111223678899999999999999776
Q ss_pred HH-HHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCC
Q 042544 116 RE-IAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLP 194 (305)
Q Consensus 116 ~~-l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~ 194 (305)
.. +++.++++|+|+|+|+.|++.|+++++..++ .+++++++|+.+++ +++||+|++... .++...
T Consensus 138 a~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~-------- 203 (298)
T 3fpf_A 138 GILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRR-------- 203 (298)
T ss_dssp HHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHH--------
T ss_pred HHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHH--------
Confidence 44 5565789999999999999999999998888 78999999998865 688999997554 455544
Q ss_pred CcccHHHHHHHHHhCCceEEEec
Q 042544 195 DIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 195 ~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++++.++|||||.+++...
T Consensus 204 ---~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 204 ---VFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ---HHHHHHHHCCTTCEEEEEEC
T ss_pred ---HHHHHHHHcCCCcEEEEEcC
Confidence 69999999999999999764
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=159.01 Aligned_cols=164 Identities=20% Similarity=0.212 Sum_probs=129.5
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+...+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++...+.. +++++++|+..+++++++|
T Consensus 29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~f 107 (219)
T 3dh0_A 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTV 107 (219)
T ss_dssp HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCE
T ss_pred HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCe
Confidence 344567788899999999999999999964 3579999999999999999998887765 7999999999988888999
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHH
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRF 249 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 249 (305)
|+|++..+++|+++... +++++.++|+|||.+++.+.........+ +..
T Consensus 108 D~v~~~~~l~~~~~~~~-----------~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---~~~----------------- 156 (219)
T 3dh0_A 108 DFIFMAFTFHELSEPLK-----------FLEELKRVAKPFAYLAIIDWKKEERDKGP---PPE----------------- 156 (219)
T ss_dssp EEEEEESCGGGCSSHHH-----------HHHHHHHHEEEEEEEEEEEECSSCCSSSC---CGG-----------------
T ss_pred eEEEeehhhhhcCCHHH-----------HHHHHHHHhCCCeEEEEEEecccccccCC---chh-----------------
Confidence 99999999999988765 69999999999999999875433211110 000
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcCC
Q 042544 250 VTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQ 303 (305)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp~ 303 (305)
...+.+++..+++++||+++... ......++++++|+.
T Consensus 157 --------------~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~~~~~~~~k~~ 194 (219)
T 3dh0_A 157 --------------EVYSEWEVGLILEDAGIRVGRVV--EVGKYCFGVYAMIVK 194 (219)
T ss_dssp --------------GSCCHHHHHHHHHHTTCEEEEEE--EETTTEEEEEEECC-
T ss_pred --------------cccCHHHHHHHHHHCCCEEEEEE--eeCCceEEEEEEecc
Confidence 01245688999999999887732 333456788999985
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=166.72 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=99.0
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCee
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSFD 170 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 170 (305)
++..+.. ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...++..+++++++|+.+++ +++++||
T Consensus 61 ~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD 138 (285)
T 4htf_A 61 VLAEMGP-QKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVD 138 (285)
T ss_dssp HHHHTCS-SCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEE
T ss_pred HHHhcCC-CCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCce
Confidence 3334444 3679999999999999999976 78999999999999999999988877678999999999877 7789999
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|++..+++|++++.. +++++.++|+|||.+++.+.
T Consensus 139 ~v~~~~~l~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 139 LILFHAVLEWVADPRS-----------VLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp EEEEESCGGGCSCHHH-----------HHHHHHHTEEEEEEEEEEEE
T ss_pred EEEECchhhcccCHHH-----------HHHHHHHHcCCCeEEEEEEe
Confidence 9999999999998866 69999999999999999764
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=166.70 Aligned_cols=186 Identities=18% Similarity=0.183 Sum_probs=131.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHH--hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIA--QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~--~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.+.++.+|||||||+|.++..++ ..++.+|+|+|+|+.+++.|++++...+...+++++++|+.+++++ ++||+|++
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~ 193 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTS 193 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEE
Confidence 45678999999999999999995 4567899999999999999999998888777799999999998887 89999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCC--CCCccccCCCcccccccccchhHHHHHH
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSP--LPWYLPLDTSHFSLSSFRLTSVGRFVTR 252 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 252 (305)
..+++|++++... ..+++++.++|+|||.+++.+........ .+|.. . ...........
T Consensus 194 ~~~~~~~~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~---------~--~~~~~~~~~~~ 254 (305)
T 3ocj_A 194 NGLNIYEPDDARV--------TELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDM---------Q--AIDPHDLQLQQ 254 (305)
T ss_dssp CSSGGGCCCHHHH--------HHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCG---------G--GSCHHHHHHHH
T ss_pred CChhhhcCCHHHH--------HHHHHHHHHhcCCCeEEEEEecCCCCccccccccee---------e--ccccchhhhhh
Confidence 9999999988653 12599999999999999997643221110 11211 0 01111111111
Q ss_pred HHHHHHHHhcc-CCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcCC
Q 042544 253 NMVKALEFVGL-APKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQ 303 (305)
Q Consensus 253 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp~ 303 (305)
.........++ ...+.+++..+++++||+++.... ........++|+||+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~-~~~~~~~~v~a~Kpa 305 (305)
T 3ocj_A 255 LVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFED-DRARLFPTVIARKPA 305 (305)
T ss_dssp HHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEEC-CTTSSSCEEEEECCC
T ss_pred hHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEc-ccCceeeEEEEecCC
Confidence 11111101112 224668999999999998877432 223344578999985
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=160.01 Aligned_cols=113 Identities=26% Similarity=0.362 Sum_probs=100.2
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
+...+.+.++.+|||||||+|.++..+++. ..+|+|+|+|+.|++.|++++...+.. ++.++++|+..+|+++++||+
T Consensus 29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~fD~ 106 (260)
T 1vl5_A 29 LMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDERFHI 106 (260)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTCEEE
T ss_pred HHHHhCCCCCCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCCCCCCEEE
Confidence 444567778899999999999999999976 469999999999999999998877764 799999999999999999999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|++..+++|++++.. +++++.++|+|||.+++.+.
T Consensus 107 V~~~~~l~~~~d~~~-----------~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 107 VTCRIAAHHFPNPAS-----------FVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp EEEESCGGGCSCHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred EEEhhhhHhcCCHHH-----------HHHHHHHHcCCCCEEEEEEc
Confidence 999999999999866 69999999999999999764
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=156.06 Aligned_cols=169 Identities=18% Similarity=0.159 Sum_probs=121.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.. .+++++++|+.+++++ ++||+|++..+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-~~fD~v~~~~~ 115 (220)
T 3hnr_A 43 NKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-TSIDTIVSTYA 115 (220)
T ss_dssp HTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC-SCCSEEEEESC
T ss_pred ccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC-CCeEEEEECcc
Confidence 347889999999999999999976 7899999999999999988753 4689999999998887 89999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHH-HH
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNM-VK 256 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~ 256 (305)
++|++++.... +++++.++|+|||.+++.+...... . ............. ..
T Consensus 116 l~~~~~~~~~~---------~l~~~~~~LkpgG~l~i~~~~~~~~---------~---------~~~~~~~~~~~~~~~~ 168 (220)
T 3hnr_A 116 FHHLTDDEKNV---------AIAKYSQLLNKGGKIVFADTIFADQ---------D---------AYDKTVEAAKQRGFHQ 168 (220)
T ss_dssp GGGSCHHHHHH---------HHHHHHHHSCTTCEEEEEEECBSSH---------H---------HHHHHHHHHHHTTCHH
T ss_pred hhcCChHHHHH---------HHHHHHHhcCCCCEEEEEeccccCh---------H---------HHHHHHHHHHhCCCcc
Confidence 99999986532 5999999999999999986432210 0 0000000000000 00
Q ss_pred -HHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcCC
Q 042544 257 -ALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQ 303 (305)
Q Consensus 257 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp~ 303 (305)
..........+.+++..+++++||+++.. ....-.+++.++||.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~---~~~~~~w~~~~~~~~ 213 (220)
T 3hnr_A 169 LANDLQTEYYTRIPVMQTIFENNGFHVTFT---RLNHFVWVMEATKQL 213 (220)
T ss_dssp HHHHHHHSCCCBHHHHHHHHHHTTEEEEEE---ECSSSEEEEEEEECS
T ss_pred chhhcchhhcCCHHHHHHHHHHCCCEEEEe---eccceEEEEeehhhh
Confidence 00111112235679999999999987662 233445678888874
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-21 Score=166.32 Aligned_cols=118 Identities=21% Similarity=0.263 Sum_probs=104.4
Q ss_pred HHHHHHcC-CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLG-LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
+.+...+. +.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|++++...++..+++++++|+.++++++++
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 185 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGA 185 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCC
Confidence 44555666 78899999999999999999996557899999999999999999999988877899999999999988899
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
||+|++..+++|++ ... +++++.++|+|||.+++.+...
T Consensus 186 fD~V~~~~~l~~~~-~~~-----------~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 186 VTASWNNESTMYVD-LHD-----------LFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp EEEEEEESCGGGSC-HHH-----------HHHHHHHHEEEEEEEEEEEEEE
T ss_pred EeEEEECCchhhCC-HHH-----------HHHHHHHHcCCCcEEEEEEccc
Confidence 99999999999994 433 6999999999999999987543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=158.36 Aligned_cols=109 Identities=21% Similarity=0.316 Sum_probs=99.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.++.+|||||||+|.++..+++.+.++|+|+|+|+.+++.|++++...++.++++++++|+.++++++++||+|++..+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence 67889999999999999999997767799999999999999999999888877899999999999988899999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
++|+ +... +++++.++|+|||.+++.+..
T Consensus 124 ~~~~-~~~~-----------~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 124 IYNI-GFER-----------GLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp GGGT-CHHH-----------HHHHHGGGEEEEEEEEEEEEE
T ss_pred ceec-CHHH-----------HHHHHHHHcCCCCEEEEEEee
Confidence 9999 5544 599999999999999998754
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=159.57 Aligned_cols=184 Identities=15% Similarity=0.120 Sum_probs=121.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc-c
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE-A 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 177 (305)
+++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ++.++++|+..+++ +++||+|++.. +
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-~~~fD~v~~~~~~ 120 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-GRRFSAVTCMFSS 120 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-SCCEEEEEECTTG
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-cCCcCEEEEcCch
Confidence 45689999999999999999976 6799999999999999998742 68999999999887 68999999998 9
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCcc----ccCC-Cccccc-------------
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYL----PLDT-SHFSLS------------- 239 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~----~~~~-~~~~~~------------- 239 (305)
++|++++... ..+++++.++|+|||.+++............+.. +... ....+.
T Consensus 121 l~~~~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (263)
T 3pfg_A 121 IGHLAGQAEL--------DAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEV 192 (263)
T ss_dssp GGGSCHHHHH--------HHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred hhhcCCHHHH--------HHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEE
Confidence 9999865432 1269999999999999999643222211111100 0000 000000
Q ss_pred ccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcCCC
Q 042544 240 SFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQH 304 (305)
Q Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp~~ 304 (305)
.+....-+.. .....+......++.+++..+++++||+++.. .+.+....+++|+||+.
T Consensus 193 ~~~~~~~~~~----~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~--~~~~~~~~~~va~K~a~ 251 (263)
T 3pfg_A 193 HYLVAGPDRG----ITHHEESHRITLFTREQYERAFTAAGLSVEFM--PGGPSGRGLFTGLPGAK 251 (263)
T ss_dssp EEEEEETTTE----EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEE--SSTTTSSCEEEEEECC-
T ss_pred EEEEecCCCc----EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEe--eCCCCCceeEEEecCCC
Confidence 0000000000 00000001123456789999999999988773 34555677899999963
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-20 Score=153.38 Aligned_cols=114 Identities=22% Similarity=0.411 Sum_probs=102.1
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
.+...+.+.++.+|||||||+|.++..+++. ..+|+|+|+|+.|++.+++++...+.. +++++++|+..+++++++||
T Consensus 12 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD 89 (239)
T 1xxl_A 12 LMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPDDSFD 89 (239)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCTTCEE
T ss_pred hHHHHhCcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCCCCcEE
Confidence 3445678889999999999999999999976 579999999999999999998877764 79999999999999889999
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|++..+++|+++... +++++.++|+|||.+++.+.
T Consensus 90 ~v~~~~~l~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 90 IITCRYAAHHFSDVRK-----------AVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp EEEEESCGGGCSCHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCchhhccCHHH-----------HHHHHHHHcCCCcEEEEEEc
Confidence 9999999999998766 69999999999999999764
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=154.67 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=114.7
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 180 (305)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++. .+++++++|+.++++++++||+|++..+++|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTT
T ss_pred CCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhc
Confidence 779999999999999999976 789999999999999998862 3689999999998888899999999999999
Q ss_pred cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHHHHHHH
Q 042544 181 APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEF 260 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 260 (305)
++...... +++++.++|+|||.+++.+..... ...+.....
T Consensus 115 ~~~~~~~~---------~l~~~~~~L~pgG~l~i~~~~~~~--~~~~~~~~~---------------------------- 155 (203)
T 3h2b_A 115 MGPGELPD---------ALVALRMAVEDGGGLLMSFFSGPS--LEPMYHPVA---------------------------- 155 (203)
T ss_dssp CCTTTHHH---------HHHHHHHTEEEEEEEEEEEECCSS--CEEECCSSS----------------------------
T ss_pred CCHHHHHH---------HHHHHHHHcCCCcEEEEEEccCCc--hhhhhchhh----------------------------
Confidence 98433222 699999999999999998743321 000000000
Q ss_pred hccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcC
Q 042544 261 VGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302 (305)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp 302 (305)
.....+.+++..+++++||+++....... .|...+...|+
T Consensus 156 -~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~-~p~~~l~~~~~ 195 (203)
T 3h2b_A 156 -TAYRWPLPELAQALETAGFQVTSSHWDPR-FPHAYLTAEAS 195 (203)
T ss_dssp -CEEECCHHHHHHHHHHTTEEEEEEEECTT-SSEEEEEEEEC
T ss_pred -hhccCCHHHHHHHHHHCCCcEEEEEecCC-Ccchhhhhhhh
Confidence 01123457899999999998877544444 44444444443
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=156.80 Aligned_cols=120 Identities=23% Similarity=0.253 Sum_probs=105.8
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
...+...+.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.|++.|++++...++..+++++++|+.++++ +++
T Consensus 25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 103 (256)
T 1nkv_A 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEK 103 (256)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSC
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCC
Confidence 3445556788899999999999999999999655789999999999999999999888887789999999999887 789
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
||+|++..+++|+++... +++++.++|||||.+++.+....
T Consensus 104 fD~V~~~~~~~~~~~~~~-----------~l~~~~r~LkpgG~l~~~~~~~~ 144 (256)
T 1nkv_A 104 CDVAACVGATWIAGGFAG-----------AEELLAQSLKPGGIMLIGEPYWR 144 (256)
T ss_dssp EEEEEEESCGGGTSSSHH-----------HHHHHTTSEEEEEEEEEEEEEET
T ss_pred CCEEEECCChHhcCCHHH-----------HHHHHHHHcCCCeEEEEecCccc
Confidence 999999999999988765 69999999999999999876443
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-20 Score=155.53 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=99.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.+++++...++..+++++++|+..+|+++++||+|++..
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 56788899999999999999999764569999999999999999999998887789999999999998889999999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+++|+ +... +++++.++|+|||.+++.+..
T Consensus 123 ~l~~~-~~~~-----------~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 123 AIYNI-GFER-----------GMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp CSCCC-CHHH-----------HHHHHHTTEEEEEEEEEEEEE
T ss_pred hHhhc-CHHH-----------HHHHHHHHcCCCcEEEEEEee
Confidence 99999 5544 599999999999999998754
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-20 Score=156.83 Aligned_cols=168 Identities=19% Similarity=0.337 Sum_probs=124.6
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
...+.....+.++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.+++++...+.. +++++++|+..++++++
T Consensus 26 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~ 104 (276)
T 3mgg_A 26 EKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPFEDS 104 (276)
T ss_dssp HHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCSCTT
T ss_pred HHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCCCCC
Confidence 344444556678899999999999999999954 5789999999999999999998887764 79999999999998889
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhH
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVG 247 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 247 (305)
+||+|++..+++|++++.. +++++.++|+|||.+++.+.+.... ...|.. ....
T Consensus 105 ~fD~v~~~~~l~~~~~~~~-----------~l~~~~~~L~pgG~l~~~~~~~~~~----~~~~~~-----------~~~~ 158 (276)
T 3mgg_A 105 SFDHIFVCFVLEHLQSPEE-----------ALKSLKKVLKPGGTITVIEGDHGSC----YFHPEG-----------KKAI 158 (276)
T ss_dssp CEEEEEEESCGGGCSCHHH-----------HHHHHHHHEEEEEEEEEEEECGGGC----EEESCC-----------HHHH
T ss_pred CeeEEEEechhhhcCCHHH-----------HHHHHHHHcCCCcEEEEEEcCCCCc----eECCCc-----------HHHH
Confidence 9999999999999999876 5999999999999999987433210 000110 1111
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhc
Q 042544 248 RFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAA 284 (305)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (305)
.+. ..........+..+....++..+++++||..+.
T Consensus 159 ~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~ 194 (276)
T 3mgg_A 159 EAW-NCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIR 194 (276)
T ss_dssp HHH-HHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEE
T ss_pred HHH-HHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEE
Confidence 111 112222233344555556788888888887655
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=157.28 Aligned_cols=118 Identities=23% Similarity=0.315 Sum_probs=100.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..+...+.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.++++.... .+++++++|+.++++++++|
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCCCcE
Confidence 345556678889999999999999999999644789999999999999999876443 57999999999999989999
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
|+|++..+++|++...... +++++.++|+|||.+++.+...
T Consensus 122 D~v~~~~~l~~~~~~~~~~---------~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNK---------LFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp EEEEEESCGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEEeHHHHHHhcChHHHHH---------HHHHHHHHcCCCCEEEEEEecc
Confidence 9999999999995433322 6999999999999999987543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=158.56 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
.+.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++ ..+++++++|++++|+++++||+|++..++|
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h 110 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDTGLPPASVDVAIAAQAMH 110 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCCCCCSSCEEEEEECSCCT
T ss_pred CCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhhcccCCcccEEEEeeehh
Confidence 4579999999999999999976 6899999999999987653 2579999999999999999999999999998
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
|++ ... +++++.|+|||||.+++....
T Consensus 111 ~~~-~~~-----------~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 111 WFD-LDR-----------FWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp TCC-HHH-----------HHHHHHHHEEEEEEEEEEEEC
T ss_pred Hhh-HHH-----------HHHHHHHHcCCCCEEEEEECC
Confidence 875 433 599999999999999887643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-20 Score=154.95 Aligned_cols=103 Identities=27% Similarity=0.452 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
+++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. ...+++++++|+..+++++++||+|++..++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 126 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINSL 126 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcChH
Confidence 47789999999999999999976 789999999999999998764 2357999999999999888999999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|++++.. +++++.++|+|||.+++.+.
T Consensus 127 ~~~~~~~~-----------~l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 127 EWTEEPLR-----------ALNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp TSSSCHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred hhccCHHH-----------HHHHHHHHhCCCeEEEEEEc
Confidence 99998866 59999999999999999874
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=146.92 Aligned_cols=112 Identities=17% Similarity=0.244 Sum_probs=96.1
Q ss_pred HHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 94 LQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
..+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+.. +++++++|+..+++ +++||+|+
T Consensus 26 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~~D~v~ 102 (199)
T 2xvm_A 26 EAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTF-DRQYDFIL 102 (199)
T ss_dssp HHTTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCC-CCCEEEEE
T ss_pred HHhhccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCC-CCCceEEE
Confidence 3455567789999999999999999976 789999999999999999998877663 69999999998887 78999999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+..+++|++...... +++++.++|+|||.+++.+.
T Consensus 103 ~~~~l~~~~~~~~~~---------~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 103 STVVLMFLEAKTIPG---------LIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp EESCGGGSCGGGHHH---------HHHHHHHTEEEEEEEEEEEE
T ss_pred EcchhhhCCHHHHHH---------HHHHHHHhcCCCeEEEEEEe
Confidence 999999998443322 69999999999999888664
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=149.91 Aligned_cols=103 Identities=20% Similarity=0.261 Sum_probs=89.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
.++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. ++.++++|+..++ ++++||+|++..
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~ 110 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AIDAYDAVWAHA 110 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CCSCEEEEEECS
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-CCCcEEEEEecC
Confidence 3567889999999999999999976 789999999999999999875 3678899999888 678999999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++|++...... +++++.++|+|||.+++...
T Consensus 111 ~l~~~~~~~~~~---------~l~~~~~~LkpgG~l~~~~~ 142 (211)
T 3e23_A 111 CLLHVPRDELAD---------VLKLIWRALKPGGLFYASYK 142 (211)
T ss_dssp CGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEEE
T ss_pred chhhcCHHHHHH---------HHHHHHHhcCCCcEEEEEEc
Confidence 999998443322 69999999999999999764
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-20 Score=151.04 Aligned_cols=113 Identities=17% Similarity=0.126 Sum_probs=93.0
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcC-----------CCCCeEEEEcCCCCCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAG-----------VDKTCNFVKADFMKMP 163 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-----------~~~~~~~~~~d~~~~~ 163 (305)
.+.+.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++..... ...+++++++|+.+++
T Consensus 17 ~l~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 95 (203)
T 1pjz_A 17 SLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 95 (203)
T ss_dssp HHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred hcccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence 345678899999999999999999986 7899999999999999998754210 1247999999999988
Q ss_pred CCC-CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 164 FPD-NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 164 ~~~-~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++ ++||+|++..+++|++...... +++++.++|||||.+++...
T Consensus 96 ~~~~~~fD~v~~~~~l~~l~~~~~~~---------~l~~~~r~LkpgG~~~l~~~ 141 (203)
T 1pjz_A 96 ARDIGHCAAFYDRAAMIALPADMRER---------YVQHLEALMPQACSGLLITL 141 (203)
T ss_dssp HHHHHSEEEEEEESCGGGSCHHHHHH---------HHHHHHHHSCSEEEEEEEEE
T ss_pred cccCCCEEEEEECcchhhCCHHHHHH---------HHHHHHHHcCCCcEEEEEEE
Confidence 765 7899999999999998654432 69999999999998555443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=159.75 Aligned_cols=179 Identities=11% Similarity=0.117 Sum_probs=133.1
Q ss_pred HHHHcCCCC-CCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCC
Q 042544 92 LALQLGLKS-GQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNS 168 (305)
Q Consensus 92 l~~~~~~~~-~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~ 168 (305)
+...++..+ +.+|||||||+|.++..+++ .++.+++++|+ +.+++.+++++...+..++++++.+|+.+.+ +.++.
T Consensus 170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 248 (352)
T 3mcz_A 170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGA 248 (352)
T ss_dssp HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCC
T ss_pred HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCC
Confidence 334445556 78999999999999999995 56789999999 8899999999888887778999999998865 13466
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHH
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGR 248 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 248 (305)
||+|++..++||+++..... ++++++++|+|||.+++.+.........++ ...
T Consensus 249 ~D~v~~~~vlh~~~~~~~~~---------~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~------------------~~~ 301 (352)
T 3mcz_A 249 ADVVMLNDCLHYFDAREARE---------VIGHAAGLVKPGGALLILTMTMNDDRVTPA------------------LSA 301 (352)
T ss_dssp EEEEEEESCGGGSCHHHHHH---------HHHHHHHTEEEEEEEEEEEECCCTTSSSSH------------------HHH
T ss_pred ccEEEEecccccCCHHHHHH---------HHHHHHHHcCCCCEEEEEEeccCCCCCCCc------------------hHH
Confidence 99999999999999875433 699999999999999998865442211111 111
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcCCC
Q 042544 249 FVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQH 304 (305)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp~~ 304 (305)
+..... ......-...+.+++..+++++||.++.. ...+..+++||||.+
T Consensus 302 ~~~~~~--~~~~~~~~~~t~~e~~~ll~~aGf~~~~~----~~g~~~l~~a~kp~~ 351 (352)
T 3mcz_A 302 DFSLHM--MVNTNHGELHPTPWIAGVVRDAGLAVGER----SIGRYTLLIGQRSSG 351 (352)
T ss_dssp HHHHHH--HHHSTTCCCCCHHHHHHHHHHTTCEEEEE----EETTEEEEEEECCCC
T ss_pred HhhHHH--HhhCCCCCcCCHHHHHHHHHHCCCceeee----ccCceEEEEEecCCC
Confidence 111111 11111233456789999999999998872 245678999999975
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-20 Score=152.49 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=114.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC---CCCC-CCeeE
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM---PFPD-NSFDA 171 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~-~~fD~ 171 (305)
+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ .++.+.++|+.++ ++.. ++||+
T Consensus 48 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 48 ILGRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred hhcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccE
Confidence 33346689999999999999999976 78999999999999999885 3577888888765 5444 45999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHH
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVT 251 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 251 (305)
|++..+++ .++... +++++.++|+|||.+++.+.........+........ .+..+...
T Consensus 120 v~~~~~l~-~~~~~~-----------~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------- 178 (227)
T 3e8s_A 120 ICANFALL-HQDIIE-----------LLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREE--SFAGFAGD------- 178 (227)
T ss_dssp EEEESCCC-SSCCHH-----------HHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEE--CCTTSSSC-------
T ss_pred EEECchhh-hhhHHH-----------HHHHHHHHhCCCeEEEEEecCccccCccccccccchh--hhhccccC-------
Confidence 99999999 666654 6999999999999999987543321111100000000 00000000
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccc----cccceEEEEEcC
Q 042544 252 RNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEI----FTPMYFFLARKP 302 (305)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~arKp 302 (305)
.........+.+++..+++++||.++....... .....++++|||
T Consensus 179 ------~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 179 ------WQPMPWYFRTLASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp ------CCCEEEEECCHHHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred ------cccceEEEecHHHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence 000001113457899999999998876322111 123568899987
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=162.69 Aligned_cols=109 Identities=19% Similarity=0.300 Sum_probs=95.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhc-----C-C-CCCeEEEEcCCCCC------
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFA-----G-V-DKTCNFVKADFMKM------ 162 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~-----~-~-~~~~~~~~~d~~~~------ 162 (305)
+.++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|++++... | . ..+++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 457889999999999999999964 5679999999999999999987654 2 2 25799999999987
Q ss_pred CCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 163 PFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 163 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++++++||+|++..+++|++++.. +++++.++|||||.+++.+.
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~-----------~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLA-----------LFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCCCHHH-----------HHHHHHHHcCCCCEEEEEEe
Confidence 888899999999999999998866 69999999999999999864
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=152.78 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=114.4
Q ss_pred HhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcC----CCCCCeEEEEcCCCChHHHHHH
Q 042544 44 KANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLG----LKSGQKVLDVGCGIGGPLREIA 119 (305)
Q Consensus 44 ~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~ 119 (305)
.+.+++...++||.....|+..+++. .. .-.........++...+. ..++.+|||||||+|.++..++
T Consensus 27 ~~~~~~~~~~~w~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~ 98 (241)
T 2ex4_A 27 EKQFYSKAKTYWKQIPPTVDGMLGGY-------GH-ISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLL 98 (241)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHTTTC-------GG-GHHHHHHHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTT
T ss_pred cchhHHHHHHHHhcCCccccccccCC-------CC-cchhhHHhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHH
Confidence 34556667888887665555433211 00 001111122223333222 3357899999999999999988
Q ss_pred hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccH
Q 042544 120 QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRST 199 (305)
Q Consensus 120 ~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l 199 (305)
+....+|+|+|+|+.+++.|+++....+ ..++.++++|+..+++++++||+|++..+++|++++.... ++
T Consensus 99 ~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~---------~l 168 (241)
T 2ex4_A 99 LPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAE---------FL 168 (241)
T ss_dssp TTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHH---------HH
T ss_pred HhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHH---------HH
Confidence 6546799999999999999999876653 2368999999998888888999999999999999865322 69
Q ss_pred HHHHHHHHhCCceEEEeccC
Q 042544 200 RKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 200 ~~~~~~L~~gG~~~i~~~~~ 219 (305)
+++.++|+|||.+++.+...
T Consensus 169 ~~~~~~LkpgG~l~i~~~~~ 188 (241)
T 2ex4_A 169 RRCKGSLRPNGIIVIKDNMA 188 (241)
T ss_dssp HHHHHHEEEEEEEEEEEEEB
T ss_pred HHHHHhcCCCeEEEEEEccC
Confidence 99999999999999987543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=150.99 Aligned_cols=106 Identities=14% Similarity=0.190 Sum_probs=91.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc-cc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE-AT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 178 (305)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++....+. ++.++++|+..++++ ++||+|++.. ++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~fD~v~~~~~~l 112 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDST 112 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc-CCceEEEEcCccc
Confidence 6789999999999999999976 78999999999999999999877654 689999999988876 8899999998 99
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|++++... ..+++++.++|+|||.+++...
T Consensus 113 ~~~~~~~~~--------~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 113 NYIIDSDDL--------KKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGCCSHHHH--------HHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccCCHHHH--------HHHHHHHHHhcCCCcEEEEEec
Confidence 999653321 1269999999999999998654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-19 Score=149.51 Aligned_cols=151 Identities=16% Similarity=0.164 Sum_probs=114.0
Q ss_pred hHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCe
Q 042544 46 NYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTS 125 (305)
Q Consensus 46 ~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~ 125 (305)
.|++...++|+.....++...+... .+..........+...+...++.+|||||||+|.++..++.....+
T Consensus 48 ~~~~~~~~~w~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~ 118 (254)
T 1xtp_A 48 GWYGKALEYWRTVPATVSGVLGGMD---------HVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYAT 118 (254)
T ss_dssp CHHHHHHHHHHTSCSSHHHHTTTCG---------GGHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSE
T ss_pred hhhhhhhhHHhcCCccccceecCcC---------ccCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCE
Confidence 3556777888876555544322111 1112222233444455666778999999999999999998654578
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHH
Q 042544 126 VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEA 205 (305)
Q Consensus 126 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (305)
|+|+|+|+.+++.++++.... .+++++++|+..+++++++||+|++..+++|+++..... +++++.++
T Consensus 119 v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~---------~l~~~~~~ 186 (254)
T 1xtp_A 119 TDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVK---------FFKHCQQA 186 (254)
T ss_dssp EEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHH---------HHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHH---------HHHHHHHh
Confidence 999999999999999986543 479999999999888889999999999999997644322 69999999
Q ss_pred HHhCCceEEEec
Q 042544 206 LKQAGFEVIWEK 217 (305)
Q Consensus 206 L~~gG~~~i~~~ 217 (305)
|+|||.+++.+.
T Consensus 187 LkpgG~l~i~~~ 198 (254)
T 1xtp_A 187 LTPNGYIFFKEN 198 (254)
T ss_dssp EEEEEEEEEEEE
T ss_pred cCCCeEEEEEec
Confidence 999999999874
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=152.74 Aligned_cols=110 Identities=20% Similarity=0.244 Sum_probs=95.9
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
.+.+...+++.++.+|||||||+|.++..+++ ++.+|+|+|+|+.|++.++++ .+++++++|+.++++++++
T Consensus 23 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~~d~~~~~~~~~~ 94 (261)
T 3ege_A 23 VNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVH-------PQVEWFTGYAENLALPDKS 94 (261)
T ss_dssp HHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCC-------TTEEEECCCTTSCCSCTTC
T ss_pred HHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhc-------cCCEEEECchhhCCCCCCC
Confidence 34455566777889999999999999999997 589999999999999876553 2799999999999998899
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
||+|++..+++|+++... +++++.++|| ||.+++.+..
T Consensus 95 fD~v~~~~~l~~~~~~~~-----------~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 95 VDGVISILAIHHFSHLEK-----------SFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp BSEEEEESCGGGCSSHHH-----------HHHHHHHHBC-SSCEEEEEEC
T ss_pred EeEEEEcchHhhccCHHH-----------HHHHHHHHhC-CcEEEEEEcC
Confidence 999999999999988876 5999999999 9988887753
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=152.82 Aligned_cols=179 Identities=16% Similarity=0.100 Sum_probs=130.6
Q ss_pred HHHHHcCC--CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 91 FLALQLGL--KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 91 ~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
.+...++. .++.+|||+|||+|.++..+++. ++.+++++|+| .+++.|++++...++.++++++++|+.+.+++++
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 232 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND 232 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC
Confidence 34444555 67889999999999999999954 67899999999 9999999998888777789999999988777654
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhH
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVG 247 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 247 (305)
||+|++.++++|++++.... +++++.++|+|||.+++.+.........+ ...
T Consensus 233 -~D~v~~~~~l~~~~~~~~~~---------~l~~~~~~L~pgG~l~i~e~~~~~~~~~~------------------~~~ 284 (335)
T 2r3s_A 233 -YDLVLLPNFLHHFDVATCEQ---------LLRKIKTALAVEGKVIVFDFIPNSDRITP------------------PDA 284 (335)
T ss_dssp -EEEEEEESCGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEECCCCTTSSCS------------------HHH
T ss_pred -CcEEEEcchhccCCHHHHHH---------HHHHHHHhCCCCcEEEEEeecCCCCcCCc------------------hHH
Confidence 99999999999998775433 69999999999999999875433211000 111
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcC
Q 042544 248 RFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302 (305)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp 302 (305)
.+...... .........+.+++..+++++||..+... ....+..++++++|
T Consensus 285 ~~~~~~~~--~~~~~~~~~t~~~~~~ll~~aGf~~~~~~--~~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 285 AAFSLVML--ATTPNGDAYTFAEYESMFSNAGFSHSQLH--SLPTTQQQVIVAYK 335 (335)
T ss_dssp HHHHHHHH--HHSSSCCCCCHHHHHHHHHHTTCSEEEEE--CCTTSSSEEEEEEC
T ss_pred HHHHHHHH--eeCCCCCcCCHHHHHHHHHHCCCCeeeEE--ECCCCceeEEEecC
Confidence 11111111 01112344567899999999999887733 33345567888876
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-19 Score=149.39 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=91.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 87 RHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 87 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
...+.+...+ .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++. .++.++++|+..+++ +
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~ 98 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-G 98 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-S
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-C
Confidence 3334444443 56789999999999999999975 459999999999999998863 358999999998877 6
Q ss_pred CCeeEEEec-ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 167 NSFDAVYAI-EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 167 ~~fD~v~~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
++||+|+|. .+++|++++... ..+++++.++|+|||.+++.+...
T Consensus 99 ~~~D~v~~~~~~~~~~~~~~~~--------~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 99 RKFSAVVSMFSSVGYLKTTEEL--------GAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp SCEEEEEECTTGGGGCCSHHHH--------HHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CCCcEEEEcCchHhhcCCHHHH--------HHHHHHHHHhcCCCeEEEEEeccC
Confidence 789999964 489999764322 126999999999999999976443
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-18 Score=147.66 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=106.8
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHH------HHHHHHHHHHhcCCCC
Q 042544 79 ESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEY------QITRGKELNRFAGVDK 150 (305)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~------~l~~a~~~~~~~~~~~ 150 (305)
..+..++......+...+.+.++.+|||||||+|.++..+++. +..+|+|+|+|+. +++.|++++...++..
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~ 101 (275)
T 3bkx_A 22 RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGD 101 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGG
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCC
Confidence 3455666666777777888889999999999999999999965 3389999999997 9999999988877766
Q ss_pred CeEEEEcC---CCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 151 TCNFVKAD---FMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 151 ~~~~~~~d---~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
+++++++| ...+|+++++||+|++..+++|++++.. +++.+.++++|||.+++.+...
T Consensus 102 ~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~-----------~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 102 RLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANA-----------LALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp GEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHH-----------HHHHHHHHTTTCSEEEEEEECS
T ss_pred ceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHH-----------HHHHHHHHhCCCCEEEEEEecC
Confidence 89999998 4445677889999999999999998865 3666666666799999987544
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=152.07 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=125.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
++..+..+|||||||+|.++..+++ .++.+++++|+ +.+++.|++++...++.++++++.+|+. .+++. +||+|++
T Consensus 165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~ 241 (332)
T 3i53_A 165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVL 241 (332)
T ss_dssp SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEE
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEE
Confidence 3445678999999999999999984 57789999999 9999999999988888788999999997 35554 7999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHH
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNM 254 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 254 (305)
.+++||++++...+ ++++++++|+|||.+++.+...... . +. .......
T Consensus 242 ~~vlh~~~~~~~~~---------~l~~~~~~L~pgG~l~i~e~~~~~~--~----~~----------------~~~d~~~ 290 (332)
T 3i53_A 242 SAVLHDWDDLSAVA---------ILRRCAEAAGSGGVVLVIEAVAGDE--H----AG----------------TGMDLRM 290 (332)
T ss_dssp ESCGGGSCHHHHHH---------HHHHHHHHHTTTCEEEEEECCCC---------CC----------------HHHHHHH
T ss_pred ehhhccCCHHHHHH---------HHHHHHHhcCCCCEEEEEeecCCCC--C----cc----------------HHHHHHH
Confidence 99999999975533 6999999999999999988544321 1 10 0111111
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 255 VKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
.....-...+.+++..+++++||.++...... . ..++.+||
T Consensus 291 ---~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~--~-~~vie~r~ 331 (332)
T 3i53_A 291 ---LTYFGGKERSLAELGELAAQAGLAVRAAHPIS--Y-VSIVEMTA 331 (332)
T ss_dssp ---HHHHSCCCCCHHHHHHHHHHTTEEEEEEEECS--S-SEEEEEEE
T ss_pred ---HhhCCCCCCCHHHHHHHHHHCCCEEEEEEECC--C-cEEEEEee
Confidence 11123344567899999999999887744332 2 66777765
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=147.80 Aligned_cols=105 Identities=21% Similarity=0.257 Sum_probs=94.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++++ .+...++.++++|+..+++++++||+|++..
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI--AGVDRKVQVVQADARAIPLPDESVHGVIVVH 112 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT--TTSCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--hccCCceEEEEcccccCCCCCCCeeEEEECC
Confidence 5677889999999999999999976 789999999999999999987 2234579999999999988889999999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++|+++... +++++.++|+|||.+++.
T Consensus 113 ~l~~~~~~~~-----------~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 113 LWHLVPDWPK-----------VLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CGGGCTTHHH-----------HHHHHHHHEEEEEEEEEE
T ss_pred chhhcCCHHH-----------HHHHHHHHCCCCcEEEEE
Confidence 9999998765 599999999999999886
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=150.33 Aligned_cols=109 Identities=17% Similarity=0.329 Sum_probs=96.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
..+.++.+|||||||+|.++..+++. + +.+|+|+|+|+.+++.|++++...+. +++++++|+.+++++ ++||+|+
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~v~ 94 (284)
T 3gu3_A 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN-DKYDIAI 94 (284)
T ss_dssp SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS-SCEEEEE
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCcC-CCeeEEE
Confidence 35678899999999999999999954 4 48999999999999999998876543 799999999998874 6899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+..+++|+++... +++++.++|+|||.+++.+.+
T Consensus 95 ~~~~l~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 95 CHAFLLHMTTPET-----------MLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EESCGGGCSSHHH-----------HHHHHHHTEEEEEEEEEEECC
T ss_pred ECChhhcCCCHHH-----------HHHHHHHHcCCCCEEEEEecc
Confidence 9999999999866 699999999999999998743
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-19 Score=141.08 Aligned_cols=104 Identities=19% Similarity=0.198 Sum_probs=90.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.+.+.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++ .++++++++| .++++++||+|++
T Consensus 12 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~~~~D~v~~ 81 (170)
T 3i9f_A 12 NIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPDNSVDFILF 81 (170)
T ss_dssp HHHSSCCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCTTCEEEEEE
T ss_pred hcCcCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCCCceEEEEE
Confidence 3456678899999999999999999764 4999999999999999887 2478999999 5677889999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
..+++|+++... +++++.++|+|||.+++.+...
T Consensus 82 ~~~l~~~~~~~~-----------~l~~~~~~L~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 82 ANSFHDMDDKQH-----------VISEVKRILKDDGRVIIIDWRK 115 (170)
T ss_dssp ESCSTTCSCHHH-----------HHHHHHHHEEEEEEEEEEEECS
T ss_pred ccchhcccCHHH-----------HHHHHHHhcCCCCEEEEEEcCc
Confidence 999999988765 6999999999999999987543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=148.63 Aligned_cols=105 Identities=27% Similarity=0.334 Sum_probs=93.4
Q ss_pred HHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 94 LQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
..+.+.++.+|||||||+|.++..+++ ++.+|+|+|+|+.|++.++++. .++.++++|+..+++ +++||+|+
T Consensus 51 ~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~fD~v~ 122 (279)
T 3ccf_A 51 QLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRV-DKPLDAVF 122 (279)
T ss_dssp HHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCC-SSCEEEEE
T ss_pred HHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCc-CCCcCEEE
Confidence 345667889999999999999999998 5889999999999999998864 468999999999887 57899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+..+++|++++.. +++++.++|+|||.+++...
T Consensus 123 ~~~~l~~~~d~~~-----------~l~~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 123 SNAMLHWVKEPEA-----------AIASIHQALKSGGRFVAEFG 155 (279)
T ss_dssp EESCGGGCSCHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred EcchhhhCcCHHH-----------HHHHHHHhcCCCcEEEEEec
Confidence 9999999998866 59999999999999998764
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=142.25 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=93.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++ .+. .+++++++|+.++ +++++||+|++..
T Consensus 43 ~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~~~~~~D~v~~~~ 115 (218)
T 3ou2_A 43 AGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-TPDRQWDAVFFAH 115 (218)
T ss_dssp TTTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-CCSSCEEEEEEES
T ss_pred cCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-CCCCceeEEEEec
Confidence 3667789999999999999999976 7899999999999999887 233 4799999999987 6789999999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
+++|++++.... +++++.++|+|||.+++.+...
T Consensus 116 ~l~~~~~~~~~~---------~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 116 WLAHVPDDRFEA---------FWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp CGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEEECC
T ss_pred hhhcCCHHHHHH---------HHHHHHHHcCCCeEEEEEeCCC
Confidence 999999864322 6999999999999999987544
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=152.66 Aligned_cols=174 Identities=22% Similarity=0.219 Sum_probs=130.3
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
..+...++..++.+|||||||+|.++..+++ .++.+++++|+ +.+++.|++++...+..++++++.+|+.+.++++.
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~- 257 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA- 257 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC-
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC-
Confidence 3455566777889999999999999999995 46789999999 99999999999888877789999999998776543
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHH
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGR 248 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 248 (305)
|+|++..+++|+++..... +++++.++|+|||.+++.+...... ..++ ...
T Consensus 258 -D~v~~~~vlh~~~d~~~~~---------~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~------------------~~~ 308 (359)
T 1x19_A 258 -DAVLFCRILYSANEQLSTI---------MCKKAFDAMRSGGRLLILDMVIDDP-ENPN------------------FDY 308 (359)
T ss_dssp -SEEEEESCGGGSCHHHHHH---------HHHHHHTTCCTTCEEEEEEECCCCT-TSCC------------------HHH
T ss_pred -CEEEEechhccCCHHHHHH---------HHHHHHHhcCCCCEEEEEecccCCC-CCch------------------HHH
Confidence 9999999999999854433 6999999999999999987544321 1110 001
Q ss_pred HHHHHHHHHHHHhc-cCC----CchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcC
Q 042544 249 FVTRNMVKALEFVG-LAP----KGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302 (305)
Q Consensus 249 ~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp 302 (305)
+. .. +...+ -.. .+.+++..+++++||.++...... ...++.|+||
T Consensus 309 ~~--~~---~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~---~~~vi~a~kp 359 (359)
T 1x19_A 309 LS--HY---ILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY---DHLLVQAVKP 359 (359)
T ss_dssp HH--HH---GGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET---TEEEEEEECC
T ss_pred HH--HH---HHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC---CceEEEEeCC
Confidence 11 10 00011 112 566899999999999887744322 5678999997
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=144.03 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=98.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 87 RHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 87 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
.....+...+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... .+++++++|+.+++ ++
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~-~~ 112 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFS-TA 112 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCC-CS
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCC-CC
Confidence 33445555667778889999999999999999976 579999999999999999987653 37999999999987 67
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|++..+++|++++... ..+++++.++|+|||.+++.+
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~--------~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQM--------RTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHH--------HHHHHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEEccHHHhCCCHHHH--------HHHHHHHHHHcCCCCEEEEEe
Confidence 899999999999999987432 126999999999999999876
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-19 Score=148.67 Aligned_cols=111 Identities=15% Similarity=0.130 Sum_probs=91.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHh----------c------CCCCCeEEEEcCCC
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF----------A------GVDKTCNFVKADFM 160 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~----------~------~~~~~~~~~~~d~~ 160 (305)
.+.++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++... . ....+++++++|+.
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 3457789999999999999999986 78999999999999999876531 0 01247999999999
Q ss_pred CCCCCC-CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 161 KMPFPD-NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 161 ~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++++++ ++||+|++..++++++...... +++++.++|||||.+++.+.
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~---------~l~~~~~~LkpGG~l~l~~~ 192 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDR---------YADIILSLLRKEFQYLVAVL 192 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHH---------HHHHHHHTEEEEEEEEEEEE
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHH---------HHHHHHHHcCCCeEEEEEEE
Confidence 988754 8999999999999998654432 69999999999999976543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-19 Score=145.74 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=96.7
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCC----CeEEEEcCCCCCCCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDK----TCNFVKADFMKMPFP 165 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~ 165 (305)
++...+...++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|++++...++.. +++++++|+...+.+
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 99 (217)
T 3jwh_A 20 GVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR 99 (217)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc
Confidence 3444444457789999999999999999964 34799999999999999999987766543 799999999877777
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++||+|++..+++|++++.... +++++.++|+|||.+++..
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~---------~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 100 FHGYDAATVIEVIEHLDLSRLGA---------FERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp GCSCSEEEEESCGGGCCHHHHHH---------HHHHHHTTTCCSEEEEEEE
T ss_pred CCCcCEEeeHHHHHcCCHHHHHH---------HHHHHHHHcCCCEEEEEcc
Confidence 78999999999999998774332 6999999999999666643
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.8e-19 Score=146.83 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=93.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
..+++ .+|||||||+|.++..++.. +.+|+|+|+|+.+++.|+++....+...+++++++|+.+++ ++++||+|++.
T Consensus 63 ~~~~~-~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~ 139 (235)
T 3lcc_A 63 SSLPL-GRALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDY 139 (235)
T ss_dssp TCSCC-EEEEEETCTTCHHHHHHCBT-TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEE
T ss_pred cCCCC-CCEEEeCCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEC
Confidence 34444 59999999999999999874 78999999999999999998876544557999999999876 45689999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
.+++|++...... +++++.++|+|||.+++.+...
T Consensus 140 ~~l~~~~~~~~~~---------~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 140 VFFCAIEPEMRPA---------WAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp SSTTTSCGGGHHH---------HHHHHHHHEEEEEEEEEEECCC
T ss_pred hhhhcCCHHHHHH---------HHHHHHHHCCCCcEEEEEEecc
Confidence 9999998443322 6999999999999999876443
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-19 Score=145.55 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=95.7
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCC----CeEEEEcCCCCCCCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDK----TCNFVKADFMKMPFP 165 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~ 165 (305)
++...+...++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.+++++...++.. +++++++|+...+++
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 99 (219)
T 3jwg_A 20 TVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKR 99 (219)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGG
T ss_pred HHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccc
Confidence 3334444457789999999999999999964 34799999999999999999987666543 799999999888777
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++||+|++..+++|++++.... +++++.++|+|||++++.
T Consensus 100 ~~~fD~V~~~~~l~~~~~~~~~~---------~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 100 FSGYDAATVIEVIEHLDENRLQA---------FEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp GTTCSEEEEESCGGGCCHHHHHH---------HHHHHHTTTCCSEEEEEE
T ss_pred cCCCCEEEEHHHHHhCCHHHHHH---------HHHHHHHhhCCCEEEEEc
Confidence 78999999999999998774322 699999999999955554
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=149.60 Aligned_cols=177 Identities=19% Similarity=0.225 Sum_probs=132.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
..+...++..++.+|||||||+|.++..+++ .++.+++++|+ +.+++.|++++...++.++++++.+|+. .+++. .
T Consensus 192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~ 268 (369)
T 3gwz_A 192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-G 268 (369)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-S
T ss_pred HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-C
Confidence 4455566777889999999999999999995 46789999999 9999999999988888788999999998 46665 7
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHH
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGR 248 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 248 (305)
||+|++.+++++++++.... ++++++++|+|||.+++.+....... . .. ..
T Consensus 269 ~D~v~~~~vlh~~~d~~~~~---------~L~~~~~~L~pgG~l~i~e~~~~~~~-~------------------~~-~~ 319 (369)
T 3gwz_A 269 ADVYLIKHVLHDWDDDDVVR---------ILRRIATAMKPDSRLLVIDNLIDERP-A------------------AS-TL 319 (369)
T ss_dssp CSEEEEESCGGGSCHHHHHH---------HHHHHHTTCCTTCEEEEEEEBCCSSC-C------------------HH-HH
T ss_pred ceEEEhhhhhccCCHHHHHH---------HHHHHHHHcCCCCEEEEEEeccCCCC-C------------------Cc-hh
Confidence 99999999999999887533 69999999999999999885443210 0 00 11
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcC
Q 042544 249 FVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302 (305)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp 302 (305)
+..... +...+-...+.+++..+++++||.++..... ...+..++.++|.
T Consensus 320 ~~d~~~---~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~svie~~~a 369 (369)
T 3gwz_A 320 FVDLLL---LVLVGGAERSESEFAALLEKSGLRVERSLPC-GAGPVRIVEIRRA 369 (369)
T ss_dssp HHHHHH---HHHHSCCCBCHHHHHHHHHTTTEEEEEEEEC-SSSSEEEEEEEEC
T ss_pred HhhHHH---HhhcCCccCCHHHHHHHHHHCCCeEEEEEEC-CCCCcEEEEEEeC
Confidence 111111 1112334556789999999999998874321 2344567777763
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-18 Score=151.87 Aligned_cols=159 Identities=15% Similarity=0.099 Sum_probs=117.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeEEEec
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~ 175 (305)
.+..+|||||||+|.++..+++ .++.+++++|+ +.+++.|++++...++.++++++.+|+.+. |++ ++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 3567999999999999999984 57889999999 999999999988777767899999999885 566 789999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHH
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMV 255 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 255 (305)
.++++++++.... ++++++++|+|||.+++.+........ ...... .......
T Consensus 256 ~vlh~~~~~~~~~---------~l~~~~~~L~pgG~l~i~e~~~~~~~~-----------------~~~~~~-~~~~~~~ 308 (363)
T 3dp7_A 256 QFLDCFSEEEVIS---------ILTRVAQSIGKDSKVYIMETLWDRQRY-----------------ETASYC-LTQISLY 308 (363)
T ss_dssp SCSTTSCHHHHHH---------HHHHHHHHCCTTCEEEEEECCTTSCSS-----------------HHHHHH-HHHHHHH
T ss_pred chhhhCCHHHHHH---------HHHHHHHhcCCCcEEEEEeeccCCccc-----------------cchhhH-HHHhhhh
Confidence 9999999886543 699999999999999998754331100 000000 0000000
Q ss_pred -HHHHHhccCCCchHHHHHHHHHHHHHHhcCC
Q 042544 256 -KALEFVGLAPKGSQRVQDFLEKAAEGLAAGG 286 (305)
Q Consensus 256 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (305)
...........+.+++..+++++||.++...
T Consensus 309 ~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~ 340 (363)
T 3dp7_A 309 FTAMANGNSKMFHSDDLIRCIENAGLEVEEIQ 340 (363)
T ss_dssp HHHSSCSSCCSCCHHHHHHHHHTTTEEESCCC
T ss_pred HHhhhCCCCcccCHHHHHHHHHHcCCeEEEEE
Confidence 0001111234467899999999999988744
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=148.76 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=94.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-CCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF-PDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~v~~~~ 176 (305)
+.++.+|||||||+|.++..+++....+|+|+|+|+.+++.|+++....+...++.++++|+...++ ++++||+|++..
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 4678899999999999999988764569999999999999999998877766679999999998887 578999999999
Q ss_pred ccccc--CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 177 ATCHA--PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 177 ~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+++|. ...... .+++++.++|+|||.+++...+
T Consensus 142 ~l~~~~~~~~~~~---------~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 142 SFHYAFSTSESLD---------IAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp CGGGGGSSHHHHH---------HHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhhhcCCHHHHH---------HHHHHHHHhcCCCCEEEEEECC
Confidence 99873 222221 2699999999999999998754
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-18 Score=149.46 Aligned_cols=177 Identities=18% Similarity=0.142 Sum_probs=130.7
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
.+....+..+..+|||||||+|.++..++ ++|+.+++..|. |.+++.|++++...+ .++++++.+|+...|.+ .+
T Consensus 170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~~--~~ 245 (353)
T 4a6d_A 170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPLP--EA 245 (353)
T ss_dssp HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCCC--CC
T ss_pred HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCCC--Cc
Confidence 34444566677899999999999999999 568899999998 889999998876544 56899999999876554 47
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHH
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRF 249 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 249 (305)
|+|++..++|++++++... +++++++.|+|||.++|.+..+......|+ ...+
T Consensus 246 D~~~~~~vlh~~~d~~~~~---------iL~~~~~al~pgg~lli~e~~~~~~~~~~~------------------~~~~ 298 (353)
T 4a6d_A 246 DLYILARVLHDWADGKCSH---------LLERIYHTCKPGGGILVIESLLDEDRRGPL------------------LTQL 298 (353)
T ss_dssp SEEEEESSGGGSCHHHHHH---------HHHHHHHHCCTTCEEEEEECCCCTTSCCCH------------------HHHH
T ss_pred eEEEeeeecccCCHHHHHH---------HHHHHHhhCCCCCEEEEEEeeeCCCCCCCH------------------HHHH
Confidence 9999999999999987654 699999999999999998865543222221 1111
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcCC
Q 042544 250 VTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQ 303 (305)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp~ 303 (305)
+...+ +-..+-...+.+++..+++++||..++..+ .-.+..+++|||..
T Consensus 299 ~dl~m---l~~~~g~ert~~e~~~ll~~AGf~~v~v~~--~~~~~~~i~ArKgt 347 (353)
T 4a6d_A 299 YSLNM---LVQTEGQERTPTHYHMLLSSAGFRDFQFKK--TGAIYDAILARKGT 347 (353)
T ss_dssp HHHHH---HHSSSCCCCCHHHHHHHHHHHTCEEEEEEC--CSSSCEEEEEECCC
T ss_pred HHHHH---HHhCCCcCCCHHHHHHHHHHCCCceEEEEE--cCCceEEEEEEecC
Confidence 11111 111223445678999999999999887443 33456789999975
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-19 Score=152.41 Aligned_cols=168 Identities=16% Similarity=0.020 Sum_probs=113.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC----------------------------
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV---------------------------- 148 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~---------------------------- 148 (305)
+..++.+|||||||+|.++..++.....+|+|+|+|+.|++.|++++.....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 4567889999999999888776654224799999999999999987654210
Q ss_pred CCCeE-EEEcCCCC-CCC---CCCCeeEEEeccccccc-CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCC
Q 042544 149 DKTCN-FVKADFMK-MPF---PDNSFDAVYAIEATCHA-PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPD 222 (305)
Q Consensus 149 ~~~~~-~~~~d~~~-~~~---~~~~fD~v~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~ 222 (305)
..++. ++++|+.. .|+ .+++||+|+++.+++|+ ++.... ..++++++++|||||.+++....-
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~--------~~~l~~i~r~LKPGG~li~~~~~~--- 200 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAY--------RAALCNLASLLKPGGHLVTTVTLR--- 200 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHH--------HHHHHHHHTTEEEEEEEEEEEESS---
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHH--------HHHHHHHHHHcCCCcEEEEEEeec---
Confidence 01233 88999987 343 25789999999999996 332211 126999999999999999976311
Q ss_pred CCCCCccccCCCcccccccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCccc--------ccccc
Q 042544 223 SPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKE--------IFTPM 294 (305)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~ 294 (305)
..++..... .....+.+.+++...+.++||.++...... .+.+.
T Consensus 201 --~~~~~~g~~--------------------------~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~ 252 (263)
T 2a14_A 201 --LPSYMVGKR--------------------------EFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGV 252 (263)
T ss_dssp --CCEEEETTE--------------------------EEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCE
T ss_pred --CccceeCCe--------------------------EeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCce
Confidence 011100000 011123566789999999999876532211 12356
Q ss_pred eEEEEEcCC
Q 042544 295 YFFLARKPQ 303 (305)
Q Consensus 295 ~~~~arKp~ 303 (305)
++++|||+.
T Consensus 253 ~~~~a~K~~ 261 (263)
T 2a14_A 253 CCIVARKKP 261 (263)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecC
Confidence 789999985
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=146.25 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=96.4
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
+...+...++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++.. ..+++++++|+..+++++++||+
T Consensus 36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCeEE
Confidence 34455556789999999999999999997633499999999999999998754 35799999999999988899999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|++..+++|+++... +++++.++|+|||.+++...
T Consensus 112 v~~~~~l~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 112 VLSSLALHYIASFDD-----------ICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp EEEESCGGGCSCHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred EEEchhhhhhhhHHH-----------HHHHHHHHcCCCcEEEEEeC
Confidence 999999999988766 69999999999999999753
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=142.69 Aligned_cols=93 Identities=17% Similarity=0.312 Sum_probs=83.8
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 180 (305)
+.+|||+|||+|.++..++.. +|+|+|+.+++.++++ +++++++|+..+++++++||+|++..+++|
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF 114 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence 789999999999999988753 9999999999998874 478999999998888889999999999999
Q ss_pred cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 181 APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++++.. +++++.++|+|||.+++.+.
T Consensus 115 ~~~~~~-----------~l~~~~~~L~pgG~l~i~~~ 140 (219)
T 1vlm_A 115 VDDPER-----------ALKEAYRILKKGGYLIVGIV 140 (219)
T ss_dssp SSCHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred ccCHHH-----------HHHHHHHHcCCCcEEEEEEe
Confidence 988765 59999999999999999764
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-18 Score=151.23 Aligned_cols=180 Identities=22% Similarity=0.269 Sum_probs=129.2
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
+...+++.++.+|||||||+|.++..+++ .++.+++++|+ +.+++.|++++...++.++++++++|+.+ +++. .||
T Consensus 175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D 251 (360)
T 1tw3_A 175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KAD 251 (360)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEE
T ss_pred HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-Ccc
Confidence 34456677889999999999999999985 45789999999 99999999999888877789999999976 4444 499
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc-CCCCCCCCCccccCCCcccccccccchhHHH
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD-LAPDSPLPWYLPLDTSHFSLSSFRLTSVGRF 249 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 249 (305)
+|++..+++|+++..... +++++.++|+|||.+++.+.. .+... . .....+
T Consensus 252 ~v~~~~vl~~~~~~~~~~---------~l~~~~~~L~pgG~l~i~e~~~~~~~~---------~----------~~~~~~ 303 (360)
T 1tw3_A 252 AIILSFVLLNWPDHDAVR---------ILTRCAEALEPGGRILIHERDDLHENS---------F----------NEQFTE 303 (360)
T ss_dssp EEEEESCGGGSCHHHHHH---------HHHHHHHTEEEEEEEEEEECCBCGGGC---------C----------SHHHHH
T ss_pred EEEEcccccCCCHHHHHH---------HHHHHHHhcCCCcEEEEEEEeccCCCC---------C----------cchhhh
Confidence 999999999998876433 699999999999999998754 22100 0 011111
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCccccc---ccceEEEEEcCCCC
Q 042544 250 VTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIF---TPMYFFLARKPQHG 305 (305)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~arKp~~~ 305 (305)
...... ...+....+.+++..+++++||.++........ ....++.++|+.++
T Consensus 304 ~~~~~~---~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 359 (360)
T 1tw3_A 304 LDLRML---VFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPAATG 359 (360)
T ss_dssp HHHHHH---HHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEEC---
T ss_pred ccHHHh---hhcCCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEeCCCC
Confidence 111111 112334557789999999999988774333221 11568999998653
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=142.28 Aligned_cols=98 Identities=24% Similarity=0.367 Sum_probs=88.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
++.+|||+|||+|.++..+ +. +|+|+|+|+.+++.++++. .++.++++|+.++++++++||+|++..++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 105 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDVVLLFTTL 105 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEEEEEESCT
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEEEEEcChh
Confidence 7789999999999998877 45 9999999999999998875 46899999999999888999999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+|++++.. +++++.++|+|||.+++.+.+
T Consensus 106 ~~~~~~~~-----------~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 106 EFVEDVER-----------VLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp TTCSCHHH-----------HHHHHHHHEEEEEEEEEEEEC
T ss_pred hhcCCHHH-----------HHHHHHHHcCCCCEEEEEecC
Confidence 99998766 599999999999999998753
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=149.10 Aligned_cols=176 Identities=21% Similarity=0.220 Sum_probs=127.6
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
+...+.+.++.+|||||||+|.++..+++ .++.+++++|+ +.+++.|++++...++.++++++++|+.+ +++. .||
T Consensus 174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D 250 (374)
T 1qzz_A 174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TAD 250 (374)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEE
T ss_pred HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCC
Confidence 33455667789999999999999999995 45789999999 99999999999888877789999999976 4444 499
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec--cCCCCCCCCCccccCCCcccccccccchhHH
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK--DLAPDSPLPWYLPLDTSHFSLSSFRLTSVGR 248 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 248 (305)
+|++..+++|+++..... +++++.++|+|||.+++.+. ..... . ......
T Consensus 251 ~v~~~~vl~~~~~~~~~~---------~l~~~~~~L~pgG~l~i~e~~~~~~~~----------~---------~~~~~~ 302 (374)
T 1qzz_A 251 VVLLSFVLLNWSDEDALT---------ILRGCVRALEPGGRLLVLDRADVEGDG----------A---------DRFFST 302 (374)
T ss_dssp EEEEESCGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEECCH--------------------------HHHHH
T ss_pred EEEEeccccCCCHHHHHH---------HHHHHHHhcCCCcEEEEEechhhcCCC----------C---------Ccchhh
Confidence 999999999999876433 69999999999999999874 22210 0 001111
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccc-----eEEEEEcCC
Q 042544 249 FVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPM-----YFFLARKPQ 303 (305)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~arKp~ 303 (305)
+...... ...+-...+.+++..+++++||.++...... ... .++.++|+.
T Consensus 303 ~~~~~~~---~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~--~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 303 LLDLRML---TFMGGRVRTRDEVVDLAGSAGLALASERTSG--STTLPFDFSILEFTAVS 357 (374)
T ss_dssp HHHHHHH---HHHSCCCCCHHHHHHHHHTTTEEEEEEEEEC--CSSCSSCEEEEEEEECC
T ss_pred hcchHHH---HhCCCcCCCHHHHHHHHHHCCCceEEEEECC--CCcccCCcEEEEEEECc
Confidence 1111111 1123344577899999999999887743332 233 688888874
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=146.32 Aligned_cols=101 Identities=27% Similarity=0.353 Sum_probs=88.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeEEEec
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAVYAI 175 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~ 175 (305)
++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ ++++++|+.+. ++++++||+|++.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence 457789999999999999999876 78999999999999988763 78899998874 7888999999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+++|++++.... +++++.++|+|||.+++.+.
T Consensus 109 ~~l~~~~~~~~~~---------~l~~~~~~LkpgG~l~~~~~ 141 (240)
T 3dli_A 109 HFVEHLDPERLFE---------LLSLCYSKMKYSSYIVIESP 141 (240)
T ss_dssp SCGGGSCGGGHHH---------HHHHHHHHBCTTCCEEEEEE
T ss_pred CchhhCCcHHHHH---------HHHHHHHHcCCCcEEEEEeC
Confidence 9999999764322 69999999999999999764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=146.70 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHh--hcCCeEEEEcCCHHHHHHHHHHHHhc-CCCCCeEEEEcCCCCCCCCC------CCe
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ--FSSTSVTGLNNNEYQITRGKELNRFA-GVDKTCNFVKADFMKMPFPD------NSF 169 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~------~~f 169 (305)
.++.+|||||||+|.++..+++ .++.+|+|+|+|+.+++.|++++... +...+++++++|+.++++++ ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 5788999999999999999995 35899999999999999999998876 44568999999999988776 899
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+|++..+++|+ +... +++++.++|+|||.+++.
T Consensus 115 D~V~~~~~l~~~-~~~~-----------~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 115 DMITAVECAHWF-DFEK-----------FQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEEEEESCGGGS-CHHH-----------HHHHHHHHEEEEEEEEEE
T ss_pred eEEeHhhHHHHh-CHHH-----------HHHHHHHhcCCCcEEEEE
Confidence 999999999999 7655 699999999999999883
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-18 Score=139.26 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=92.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
..++.+|||+|||+|..+..++...+.+|+|+|+|+.|++.+++++...+ .+++++++|+..+++++++||+|++..+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYGT 98 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcCh
Confidence 45678999999999998555444357899999999999999999887655 3689999999998888899999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
++|++...... +++++.++|+|||.+++.+...
T Consensus 99 l~~~~~~~~~~---------~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 99 IFHMRKNDVKE---------AIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp GGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEEEET
T ss_pred HHhCCHHHHHH---------HHHHHHHHcCCCcEEEEEEecc
Confidence 99995333322 6999999999999999987654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-18 Score=144.28 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=90.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... +++++++|+.++ +++++||+|++..++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~~~~~fD~v~~~~~l 113 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-QLPRRYDNIVLTHVL 113 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-CCSSCEEEEEEESCG
T ss_pred cCCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-CcCCcccEEEEhhHH
Confidence 46779999999999999999975 56999999999999999987532 699999999887 467899999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHH-HHHHhCCceEEEeccC
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCL-EALKQAGFEVIWEKDL 219 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~gG~~~i~~~~~ 219 (305)
+|++++.. +++++. ++|+|||.+++.+.+.
T Consensus 114 ~~~~~~~~-----------~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 114 EHIDDPVA-----------LLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp GGCSSHHH-----------HHHHHHHTTEEEEEEEEEEEECT
T ss_pred HhhcCHHH-----------HHHHHHHHhcCCCCEEEEEcCCh
Confidence 99999866 699999 9999999999987543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=146.74 Aligned_cols=174 Identities=16% Similarity=0.171 Sum_probs=127.2
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
.+...++..+ .+|||+|||+|..+..+++ .++.+++++|+ +.+++.+++++...++.++++++.+|+.+ +++ ++|
T Consensus 159 ~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~ 234 (334)
T 2ip2_A 159 EIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNG 234 (334)
T ss_dssp HHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSC
T ss_pred HHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCC
Confidence 3444556666 8999999999999999995 46789999999 99999999988776666789999999987 565 679
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHH
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRF 249 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 249 (305)
|+|++..+++|+++..... ++++++++|+|||.+++.+....... .+ .....
T Consensus 235 D~v~~~~vl~~~~~~~~~~---------~l~~~~~~L~pgG~l~i~e~~~~~~~-~~------------------~~~~~ 286 (334)
T 2ip2_A 235 DIYLLSRIIGDLDEAASLR---------LLGNCREAMAGDGRVVVIERTISASE-PS------------------PMSVL 286 (334)
T ss_dssp SEEEEESCGGGCCHHHHHH---------HHHHHHHHSCTTCEEEEEECCBCSSS-CC------------------HHHHH
T ss_pred CEEEEchhccCCCHHHHHH---------HHHHHHHhcCCCCEEEEEEeccCCCC-Cc------------------chhHH
Confidence 9999999999998876433 69999999999999999875443210 00 01111
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 250 VTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
+..... ....-...+.+++..+++++||.++.... ...+..++.++|
T Consensus 287 ~~~~~~---~~~~~~~~t~~e~~~ll~~aGf~~~~~~~--~~~~~~~i~~~~ 333 (334)
T 2ip2_A 287 WDVHLF---MACAGRHRTTEEVVDLLGRGGFAVERIVD--LPMETRMIVAAR 333 (334)
T ss_dssp HHHHHH---HHHSCCCCBHHHHHHHHHHTTEEEEEEEE--ETTTEEEEEEEE
T ss_pred hhhHhH---hhCCCcCCCHHHHHHHHHHCCCceeEEEE--CCCCCEEEEEEe
Confidence 111111 11123445678999999999998877432 223456788887
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-18 Score=147.64 Aligned_cols=117 Identities=20% Similarity=0.287 Sum_probs=96.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC---CCeEEEEcCCCCCC---
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD---KTCNFVKADFMKMP--- 163 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~~~~~~d~~~~~--- 163 (305)
+++...+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.. .++.+..+|+..++
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 34444444457789999999999999999976 679999999999999999876443321 35789999998877
Q ss_pred CCCCCeeEEEec-ccccccCC-------hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 164 FPDNSFDAVYAI-EATCHAPD-------AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 164 ~~~~~fD~v~~~-~~l~~~~~-------~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+++++||+|++. .+++|+++ ... +++++.++|+|||.+++...+
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRL-----------ALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHH-----------HHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHH-----------HHHHHHHHcCCCeEEEEEeCC
Confidence 778999999998 89999998 433 699999999999999987653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=139.63 Aligned_cols=111 Identities=27% Similarity=0.392 Sum_probs=96.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV----DKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
++++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.++++....+. ..++.++++|+..+++++++||+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 357889999999999999999976 78999999999999999998876654 2358999999999998889999999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+..+++|++++... ..+++++.++|+|||.+++.+.
T Consensus 107 ~~~~l~~~~~~~~~--------~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 107 MQAFLTSVPDPKER--------SRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EESCGGGCCCHHHH--------HHHHHHHHHHEEEEEEEEEEEE
T ss_pred EcchhhcCCCHHHH--------HHHHHHHHHHcCCCeEEEEEEC
Confidence 99999999987632 1269999999999999999874
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-18 Score=150.29 Aligned_cols=108 Identities=22% Similarity=0.319 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCC-----------------------------
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVD----------------------------- 149 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------------------------- 149 (305)
++.+|||||||+|.++..++.. ++.+|+|+|+|+.|++.|++++...+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 6789999999999999999964 5789999999999999999986554321
Q ss_pred ----------------------------CCeEEEEcCCCCCC-----CCCCCeeEEEecccccccC----ChhhhhhcCC
Q 042544 150 ----------------------------KTCNFVKADFMKMP-----FPDNSFDAVYAIEATCHAP----DAAEIEIGDG 192 (305)
Q Consensus 150 ----------------------------~~~~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~----~~~~~~~~~~ 192 (305)
.+++|+++|+...+ +.+++||+|+|..+++|+. +....
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~----- 200 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLK----- 200 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHH-----
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHH-----
Confidence 57999999998643 5678999999999998774 22222
Q ss_pred CCCcccHHHHHHHHHhCCceEEEe
Q 042544 193 LPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 193 ~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+++++.++|+|||.+++..
T Consensus 201 ----~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 201 ----RMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp ----HHHHHHHHHEEEEEEEEEEC
T ss_pred ----HHHHHHHHHhCCCcEEEEec
Confidence 26999999999999999853
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=139.92 Aligned_cols=110 Identities=27% Similarity=0.369 Sum_probs=95.5
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
+...+...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.++++... .+++++++|+..+++++++||
T Consensus 35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHSCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEE
T ss_pred HHHhccccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCce
Confidence 344566668899999999999999999976 55 999999999999999886532 368999999999888888999
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|++..+++|+++... +++++.++|+|||.+++.+.
T Consensus 110 ~v~~~~~l~~~~~~~~-----------~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 110 LAYSSLALHYVEDVAR-----------LFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp EEEEESCGGGCSCHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEeccccccchHHH-----------HHHHHHHhcCcCcEEEEEeC
Confidence 9999999999988765 69999999999999999764
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=141.96 Aligned_cols=109 Identities=22% Similarity=0.342 Sum_probs=95.2
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
+...+.+.++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.++++ ..+++++++|+..++ ++++||
T Consensus 25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~-~~~~fD 97 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK-PAQKAD 97 (259)
T ss_dssp HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC-CSSCEE
T ss_pred HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC-ccCCcC
Confidence 444566778889999999999999999854 578999999999999999886 246899999999988 788999
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+|++..+++|+++... +++++.++|+|||.+++.+.+
T Consensus 98 ~v~~~~~l~~~~~~~~-----------~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 98 LLYANAVFQWVPDHLA-----------VLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp EEEEESCGGGSTTHHH-----------HHHHHGGGEEEEEEEEEEEEC
T ss_pred EEEEeCchhhCCCHHH-----------HHHHHHHhcCCCeEEEEEeCC
Confidence 9999999999988766 599999999999999998743
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=142.84 Aligned_cols=106 Identities=19% Similarity=0.203 Sum_probs=93.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+. +++++++|+..+++ +++||+|++..++
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~i~~~~~~ 194 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-QENYDFIVSTVVF 194 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-CSCEEEEEECSSG
T ss_pred cCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-cCCccEEEEccch
Confidence 36789999999999999999976 78999999999999999999988776 69999999998776 7889999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|++++.... +++++.++|+|||.+++...
T Consensus 195 ~~~~~~~~~~---------~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 195 MFLNRERVPS---------IIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp GGSCGGGHHH---------HHHHHHHTEEEEEEEEEEEE
T ss_pred hhCCHHHHHH---------HHHHHHHhcCCCcEEEEEEe
Confidence 9997765432 69999999999999887654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-17 Score=130.68 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=88.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec-c
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI-E 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~-~ 176 (305)
++++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.++++. .++.++++|+..+++++++||+|++. .
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 116 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLIVSAGN 116 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeEEEECCc
Confidence 457889999999999999999976 789999999999999998864 25899999999888888899999998 6
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++|++...... +++++.++|+|||.+++..
T Consensus 117 ~~~~~~~~~~~~---------~l~~~~~~l~~~G~l~~~~ 147 (195)
T 3cgg_A 117 VMGFLAEDGREP---------ALANIHRALGADGRAVIGF 147 (195)
T ss_dssp CGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEE
T ss_pred HHhhcChHHHHH---------HHHHHHHHhCCCCEEEEEe
Confidence 888886554322 6999999999999999865
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=138.86 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=89.5
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+...+. ++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++.. . .++++|+..+++++++|
T Consensus 46 ~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~~~~f 115 (260)
T 2avn_A 46 SFLEEYLK--NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFPSGAF 115 (260)
T ss_dssp HHHHHHCC--SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSCTTCE
T ss_pred HHHHHhcC--CCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCCCCCE
Confidence 34444443 6789999999999999999976 7899999999999999988743 1 28999999999888999
Q ss_pred eEEEeccccccc-CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 170 DAVYAIEATCHA-PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 170 D~v~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
|+|++..++.|+ ++... +++++.++|+|||.+++...+
T Consensus 116 D~v~~~~~~~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 116 EAVLALGDVLSYVENKDK-----------AFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp EEEEECSSHHHHCSCHHH-----------HHHHHHHHEEEEEEEEEEEEB
T ss_pred EEEEEcchhhhccccHHH-----------HHHHHHHHcCCCeEEEEEeCC
Confidence 999999877766 55444 699999999999999987643
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-19 Score=160.77 Aligned_cols=178 Identities=15% Similarity=0.139 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCe-EEEEcCC
Q 042544 81 LRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTC-NFVKADF 159 (305)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~~~~~d~ 159 (305)
+........+.+...+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++ +..... .+...+.
T Consensus 88 ~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~ 162 (416)
T 4e2x_A 88 MREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATA 162 (416)
T ss_dssp HHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhH
Confidence 34445556666777777788899999999999999999976 77999999999999998875 222111 1223344
Q ss_pred CCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCC-CCCccccCCCcccc
Q 042544 160 MKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSP-LPWYLPLDTSHFSL 238 (305)
Q Consensus 160 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~-~~~~~~~~~~~~~~ 238 (305)
..+++++++||+|++.++++|++++.. +++++.++|+|||.+++...+...... ..|. .+
T Consensus 163 ~~l~~~~~~fD~I~~~~vl~h~~d~~~-----------~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~--------~~ 223 (416)
T 4e2x_A 163 DDVRRTEGPANVIYAANTLCHIPYVQS-----------VLEGVDALLAPDGVFVFEDPYLGDIVAKTSFD--------QI 223 (416)
T ss_dssp HHHHHHHCCEEEEEEESCGGGCTTHHH-----------HHHHHHHHEEEEEEEEEEEECHHHHHHHTCGG--------GC
T ss_pred hhcccCCCCEEEEEECChHHhcCCHHH-----------HHHHHHHHcCCCeEEEEEeCChHHhhhhcchh--------hh
Confidence 445666789999999999999998866 699999999999999997633210000 0000 00
Q ss_pred cccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcC
Q 042544 239 SSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302 (305)
Q Consensus 239 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp 302 (305)
. ......++.+++..+++++||.++.......+.....++++|+
T Consensus 224 ~--------------------~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~~~~g~l~~~~~~~ 267 (416)
T 4e2x_A 224 F--------------------DEHFFLFSATSVQGMAQRCGFELVDVQRLPVHGGEVRYTLARQ 267 (416)
T ss_dssp S--------------------TTCCEECCHHHHHHHHHHTTEEEEEEEEECGGGSEEEEEEEET
T ss_pred h--------------------hhhhhcCCHHHHHHHHHHcCCEEEEEEEccCCCCEEEEEEEeC
Confidence 0 0011123457899999999998887554444444444444443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-17 Score=134.95 Aligned_cols=108 Identities=26% Similarity=0.417 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
+++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+ .+++++++|+.++++++++||+|++..++
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDYVIFIDSI 113 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCCCcEEEEEEcCch
Confidence 35789999999999999999875 4599999999999999999887665 47999999999988888899999999984
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
++........ +++++.++|+|||.+++.+.+
T Consensus 114 ~~~~~~~~~~---------~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 114 VHFEPLELNQ---------VFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GGCCHHHHHH---------HHHHHHHHEEEEEEEEEEEEC
T ss_pred HhCCHHHHHH---------HHHHHHHHcCCCcEEEEEecC
Confidence 4443322211 699999999999999998654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=130.32 Aligned_cols=109 Identities=15% Similarity=0.028 Sum_probs=91.7
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
.+...+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..+...+++++++|+.+.......||
T Consensus 46 ~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D 124 (204)
T 3njr_A 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPE 124 (204)
T ss_dssp HHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCS
T ss_pred HHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCC
Confidence 3455677888999999999999999999987 899999999999999999999988886689999999987322335799
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++...+ +.. +++++.++|+|||.+++..
T Consensus 125 ~v~~~~~~----~~~------------~l~~~~~~LkpgG~lv~~~ 154 (204)
T 3njr_A 125 AVFIGGGG----SQA------------LYDRLWEWLAPGTRIVANA 154 (204)
T ss_dssp EEEECSCC----CHH------------HHHHHHHHSCTTCEEEEEE
T ss_pred EEEECCcc----cHH------------HHHHHHHhcCCCcEEEEEe
Confidence 99987643 221 4899999999999999875
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=133.01 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=86.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCeeEEEec
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSFDAVYAI 175 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~ 175 (305)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...++ .++++++.+...++ +.+++||+|++.
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 4568899999999999999999977 89999999999999999999988887 68999998887643 447889999876
Q ss_pred ccccccCC--------hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPD--------AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~--------~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.. +++. +... ...++++.++|+|||.+++..
T Consensus 97 ~~--~~~~~~~~~~~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 97 LG--YLPSADKSVITKPHTT--------LEAIEKILDRLEVGGRLAIMI 135 (185)
T ss_dssp EC-------------CHHHH--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CCCCcchhcccChhhH--------HHHHHHHHHhcCCCcEEEEEE
Confidence 32 2221 1110 125899999999999999865
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=144.76 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=119.1
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
.+...+++.++.+|||||||+|.++..+++ .++.+++++|+ +.++. +++....+..++++++.+|+. .++| +|
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~~ 248 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--HA 248 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--CC
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC-CCCC--CC
Confidence 445566777889999999999999999985 46789999999 45544 333333345568999999997 3454 79
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHH
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRF 249 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 249 (305)
|+|++..++||+++++... ++++++++|+|||.+++.+...... ..++ ....
T Consensus 249 D~v~~~~vlh~~~d~~~~~---------~L~~~~~~LkpgG~l~i~e~~~~~~-~~~~------------------~~~~ 300 (348)
T 3lst_A 249 DVHVLKRILHNWGDEDSVR---------ILTNCRRVMPAHGRVLVIDAVVPEG-NDAH------------------QSKE 300 (348)
T ss_dssp SEEEEESCGGGSCHHHHHH---------HHHHHHHTCCTTCEEEEEECCBCSS-SSCC------------------HHHH
T ss_pred cEEEEehhccCCCHHHHHH---------HHHHHHHhcCCCCEEEEEEeccCCC-CCcc------------------hhhh
Confidence 9999999999999886433 6999999999999999987544321 0010 0111
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 250 VTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
..... .....-...+.+++..+++++||.+++... ......++.+++
T Consensus 301 ~d~~~---~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~--~~~~~~vie~~p 347 (348)
T 3lst_A 301 MDFMM---LAARTGQERTAAELEPLFTAAGLRLDRVVG--TSSVMSIAVGVP 347 (348)
T ss_dssp HHHHH---HHTTSCCCCBHHHHHHHHHHTTEEEEEEEE--CSSSCEEEEEEE
T ss_pred cChhh---hhcCCCcCCCHHHHHHHHHHCCCceEEEEE--CCCCcEEEEEEe
Confidence 11111 111223345678999999999998877443 223345666654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=143.89 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCC-----CeEEEEcCCC------CC--CCC
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK-----TCNFVKADFM------KM--PFP 165 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----~~~~~~~d~~------~~--~~~ 165 (305)
+++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|+++....+... ++++.+.|+. .+ +++
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 3578999999999987776665446799999999999999999887654321 2578888872 22 356
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+++||+|+|..+++|+.+.... ..+++++.++|||||.+++.+.+
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~--------~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHY--------ATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTH--------HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHH--------HHHHHHHHHHcCCCCEEEEEeCC
Confidence 7899999999999886432211 12699999999999999998753
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=141.98 Aligned_cols=166 Identities=16% Similarity=0.135 Sum_probs=117.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
..+..+|||||||+|.++..+++ .++.+++++|+ +.+++.+++ ..+++++.+|+.+ +++++ |+|++..
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~p~~--D~v~~~~ 269 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA-------FSGVEHLGGDMFD-GVPKG--DAIFIKW 269 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTT-CCCCC--SEEEEES
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh-------cCCCEEEecCCCC-CCCCC--CEEEEec
Confidence 56778999999999999999984 57889999999 888876643 2479999999987 67654 9999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHHH
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVK 256 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 256 (305)
++||+++..... ++++++++|+|||.+++.+.........++ ....... .++..
T Consensus 270 vlh~~~~~~~~~---------~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~---------------~~~~~~~--~d~~~ 323 (368)
T 3reo_A 270 ICHDWSDEHCLK---------LLKNCYAALPDHGKVIVAEYILPPSPDPSI---------------ATKVVIH--TDALM 323 (368)
T ss_dssp CGGGBCHHHHHH---------HHHHHHHHSCTTCEEEEEECCCCSSCCCCH---------------HHHHHHH--HHHHH
T ss_pred hhhcCCHHHHHH---------HHHHHHHHcCCCCEEEEEEeccCCCCCCch---------------hhhHHHh--hhHHH
Confidence 999999886543 699999999999999998854432111000 0000001 11111
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcC
Q 042544 257 ALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302 (305)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp 302 (305)
.....+-...+.+++..+++++||..+... ......+++.+.|.
T Consensus 324 ~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~--~~~~~~~vie~~k~ 367 (368)
T 3reo_A 324 LAYNPGGKERTEKEFQALAMASGFRGFKVA--SCAFNTYVMEFLKT 367 (368)
T ss_dssp HHHSSBCCCCCHHHHHHHHHHTTCCEEEEE--EEETTEEEEEEECC
T ss_pred HhhcCCCccCCHHHHHHHHHHCCCeeeEEE--EeCCCcEEEEEEeC
Confidence 111113344567899999999999988733 33345566777765
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-17 Score=129.09 Aligned_cols=111 Identities=15% Similarity=0.060 Sum_probs=92.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~ 167 (305)
..+...+.+.++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++...+...++ ++++|..+ ++..++
T Consensus 15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 44555667788899999999999999999954 5789999999999999999999888876678 88888854 333337
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|++..++++ .. +++++.++|+|||.+++..
T Consensus 94 ~~D~i~~~~~~~~----~~-----------~l~~~~~~L~~gG~l~~~~ 127 (178)
T 3hm2_A 94 NPDVIFIGGGLTA----PG-----------VFAAAWKRLPVGGRLVANA 127 (178)
T ss_dssp CCSEEEECC-TTC----TT-----------HHHHHHHTCCTTCEEEEEE
T ss_pred CCCEEEECCcccH----HH-----------HHHHHHHhcCCCCEEEEEe
Confidence 8999999998877 11 5999999999999999875
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=138.42 Aligned_cols=100 Identities=26% Similarity=0.299 Sum_probs=88.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC--CCCCCCCeeEEEecc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK--MPFPDNSFDAVYAIE 176 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~v~~~~ 176 (305)
.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .+++++|+.. .++++++||+|++..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~ 101 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGD 101 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEES
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECC
Confidence 57789999999999999999977 699999999999999887642 3789999986 567778999999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+++|++++.. +++++.++|+|||.+++...+
T Consensus 102 ~l~~~~~~~~-----------~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 102 VLEHLFDPWA-----------VIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp CGGGSSCHHH-----------HHHHTGGGEEEEEEEEEEEEC
T ss_pred hhhhcCCHHH-----------HHHHHHHHcCCCCEEEEEeCC
Confidence 9999998865 599999999999999998754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=137.68 Aligned_cols=109 Identities=14% Similarity=0.018 Sum_probs=86.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-----C
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF-----P 165 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~ 165 (305)
.+...+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++... ++..++.+++. .
T Consensus 36 ~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~ 107 (261)
T 3iv6_A 36 NDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKEL 107 (261)
T ss_dssp HHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGG
T ss_pred HHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc-------cceeeeeeccccccccc
Confidence 3445677888999999999999999999976 789999999999999999986533 22333333222 2
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++||+|++..+++|++..+... .++++.++| |||.++++..
T Consensus 108 ~~~fD~Vv~~~~l~~~~~~~~~~---------~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRFTTEEARR---------ACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp TTCCSEEEEESCGGGSCHHHHHH---------HHHHHHHHH-TTSEEEEEEE
T ss_pred CCCccEEEEhhhhHhCCHHHHHH---------HHHHHHHhC-cCcEEEEEec
Confidence 57899999999999987655432 699999999 9999998764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=141.36 Aligned_cols=168 Identities=17% Similarity=0.128 Sum_probs=114.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC----------------------------
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV---------------------------- 148 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~---------------------------- 148 (305)
+..++.+|||||||+|.++..++.....+|+|+|+|+.|++.+++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4456789999999999999998865224999999999999999988754320
Q ss_pred CCCe-EEEEcCCCCCC-CCC---CCeeEEEecccccccCCh--hhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCC
Q 042544 149 DKTC-NFVKADFMKMP-FPD---NSFDAVYAIEATCHAPDA--AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAP 221 (305)
Q Consensus 149 ~~~~-~~~~~d~~~~~-~~~---~~fD~v~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~ 221 (305)
..++ .++++|+...+ +++ ++||+|++..++++++.. ... .+++++.++|+|||.+++.+..-.
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~---------~~l~~~~~~LkpgG~li~~~~~~~- 202 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYR---------TALRNLGSLLKPGGFLVMVDALKS- 202 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHH---------HHHHHHHTTEEEEEEEEEEEESSC-
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHH---------HHHHHHHhhCCCCcEEEEEecCCC-
Confidence 0127 89999998753 355 789999999999955432 111 169999999999999999762111
Q ss_pred CCCCCCccccCCCcccccccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCccc--------cccc
Q 042544 222 DSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKE--------IFTP 293 (305)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~ 293 (305)
.++..... .....+.+.+++..++.++||.++...... .+..
T Consensus 203 ----~~~~~~~~--------------------------~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 252 (265)
T 2i62_A 203 ----SYYMIGEQ--------------------------KFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEG 252 (265)
T ss_dssp ----CEEEETTE--------------------------EEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCC
T ss_pred ----ceEEcCCc--------------------------cccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccce
Confidence 11100000 001123455788999999999776533211 1224
Q ss_pred ceEEEEEcCCC
Q 042544 294 MYFFLARKPQH 304 (305)
Q Consensus 294 ~~~~~arKp~~ 304 (305)
..+++|||+..
T Consensus 253 ~~~~~a~K~~~ 263 (265)
T 2i62_A 253 LFSLVGRKPGR 263 (265)
T ss_dssp EEEEEEECCC-
T ss_pred EEEEEeccccc
Confidence 56799999863
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-17 Score=136.21 Aligned_cols=111 Identities=24% Similarity=0.305 Sum_probs=90.4
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.....++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+. ++.++++|+.+++++ ++||+|++
T Consensus 36 ~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~v~~ 111 (252)
T 1wzn_A 36 EDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEFDAVTM 111 (252)
T ss_dssp HTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SCEEEEEE
T ss_pred HhcccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC-CCccEEEE
Confidence 344557789999999999999999976 78999999999999999999877654 589999999988765 68999998
Q ss_pred cc-cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 175 IE-ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 175 ~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
.. .+++++...... +++++.++|+|||.+++...+
T Consensus 112 ~~~~~~~~~~~~~~~---------~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 112 FFSTIMYFDEEDLRK---------LFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp CSSGGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCchhcCCHHHHHH---------HHHHHHHHcCCCeEEEEeccc
Confidence 74 455554333322 699999999999999886543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=134.68 Aligned_cols=169 Identities=12% Similarity=0.119 Sum_probs=117.8
Q ss_pred HHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc
Q 042544 43 RKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS 122 (305)
Q Consensus 43 ~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 122 (305)
....+++..+..||.....|... ...|........+. . .....++.+|||||||+|.++..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~---l~~~~~~~~vLDiG~G~G~~~~~l---- 85 (215)
T 2zfu_A 24 AAQRLFQEDPEAFLLYHRGFQSQ-------VKKWPLQPVDRIAR----D---LRQRPASLVVADFGCGDCRLASSI---- 85 (215)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH-------HTTSSSCHHHHHHH----H---HHTSCTTSCEEEETCTTCHHHHHC----
T ss_pred HHHHHHHHhHHHHHHHHHHHHhh-------hcccchhHHHHHHH----H---HhccCCCCeEEEECCcCCHHHHHh----
Confidence 34445566667777665555432 12343333222221 1 223457789999999999998877
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHH
Q 042544 123 STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKC 202 (305)
Q Consensus 123 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 202 (305)
..+|+|+|+|+. ++.++++|+.++++++++||+|++..++++ ++... +++++
T Consensus 86 ~~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~-----------~l~~~ 137 (215)
T 2zfu_A 86 RNPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRD-----------FLEEA 137 (215)
T ss_dssp CSCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCCCS-SCHHH-----------HHHHH
T ss_pred hccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhccc-cCHHH-----------HHHHH
Confidence 368999999986 367899999998888899999999999964 55544 69999
Q ss_pred HHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Q 042544 203 LEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGL 282 (305)
Q Consensus 203 ~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (305)
.++|+|||.+++.+.... + .+..++..+++++|+.+
T Consensus 138 ~~~L~~gG~l~i~~~~~~------~--------------------------------------~~~~~~~~~l~~~Gf~~ 173 (215)
T 2zfu_A 138 NRVLKPGGLLKVAEVSSR------F--------------------------------------EDVRTFLRAVTKLGFKI 173 (215)
T ss_dssp HHHEEEEEEEEEEECGGG------C--------------------------------------SCHHHHHHHHHHTTEEE
T ss_pred HHhCCCCeEEEEEEcCCC------C--------------------------------------CCHHHHHHHHHHCCCEE
Confidence 999999999999762110 0 13467889999999987
Q ss_pred hcCCcccccccceEEEEEcCC
Q 042544 283 AAGGRKEIFTPMYFFLARKPQ 303 (305)
Q Consensus 283 ~~~~~~~~~~~~~~~~arKp~ 303 (305)
+... ......++++++|+.
T Consensus 174 ~~~~--~~~~~~~~~~~~k~~ 192 (215)
T 2zfu_A 174 VSKD--LTNSHFFLFDFQKTG 192 (215)
T ss_dssp EEEE--CCSTTCEEEEEEECS
T ss_pred EEEe--cCCCeEEEEEEEecC
Confidence 7622 223345778888874
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-16 Score=128.85 Aligned_cols=112 Identities=15% Similarity=0.043 Sum_probs=93.8
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
..+...+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...+. ++++++++|+.+.....++
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSCC
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCCC
Confidence 44555678889999999999999999999965 458999999999999999999988877 5799999999764333477
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++..+++ +... +++++.++|+|||.+++..
T Consensus 109 ~D~i~~~~~~~---~~~~-----------~l~~~~~~LkpgG~l~~~~ 142 (204)
T 3e05_A 109 PDRVFIGGSGG---MLEE-----------IIDAVDRRLKSEGVIVLNA 142 (204)
T ss_dssp CSEEEESCCTT---CHHH-----------HHHHHHHHCCTTCEEEEEE
T ss_pred CCEEEECCCCc---CHHH-----------HHHHHHHhcCCCeEEEEEe
Confidence 99999987665 3322 6999999999999999865
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=129.73 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEecc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYAIE 176 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~~ 176 (305)
.++.+|||+|||+|.++..++.....+|+|+|+|+.|++.|++++...+. ++++++++|+.+++ +++++||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence 46789999999999999988876556899999999999999999988887 57999999998753 4468899999987
Q ss_pred ccccc-CChhhhhhcCCCCCcccHHHHHH--HHHhCCceEEEecc
Q 042544 177 ATCHA-PDAAEIEIGDGLPDIRSTRKCLE--ALKQAGFEVIWEKD 218 (305)
Q Consensus 177 ~l~~~-~~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~~~i~~~~ 218 (305)
.+++. ++... .+.++.+ +|+|||.+++....
T Consensus 122 p~~~~~~~~~~-----------~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 122 PYNVDSADVDA-----------ILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp CTTSCHHHHHH-----------HHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCCcchhhHHH-----------HHHHHHhcCccCCCeEEEEEecC
Confidence 76664 33333 5888988 99999999997654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=143.53 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCChHHHHHH-----hhcCCeE--EEEcCCHHHHHHHHHHHHhcCCCCCeEE--EEcCCCCCC------
Q 042544 99 KSGQKVLDVGCGIGGPLREIA-----QFSSTSV--TGLNNNEYQITRGKELNRFAGVDKTCNF--VKADFMKMP------ 163 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~-----~~~~~~v--~gvD~s~~~l~~a~~~~~~~~~~~~~~~--~~~d~~~~~------ 163 (305)
.++.+|||||||+|.++..++ ..++..| +|+|+|+.|++.|++++.......++.+ ..+++.+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 467799999999998765433 2245644 9999999999999998765321234544 455554432
Q ss_pred CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 164 FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 164 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++++||+|++..+++|++++.. ++++++++|||||.+++...
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~-----------~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPA-----------TLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHH-----------HHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCceeEEEEeeeeeecCCHHH-----------HHHHHHHHcCCCcEEEEEEe
Confidence 56789999999999999999876 69999999999999998753
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-17 Score=139.57 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=87.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeEEEe-
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAVYA- 174 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~- 174 (305)
+.++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....+ .+++++++|+.++ ++++++||+|++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence 35778999999999999999986544599999999999999999887654 4799999999887 888899999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+.+ +.++...... ..+++++.++|||||.+++.+
T Consensus 136 ~~~~-~~~~~~~~~~------~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 136 TYPL-SEETWHTHQF------NFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCCC-BGGGTTTHHH------HHHHHTHHHHEEEEEEEEECC
T ss_pred Cccc-chhhhhhhhH------HHHHHHHHHhcCCCeEEEEEe
Confidence 5554 3333211000 015899999999999998754
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-17 Score=141.03 Aligned_cols=116 Identities=19% Similarity=0.183 Sum_probs=93.1
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCCCCCCCe
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD--KTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~f 169 (305)
+...+...+ .+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+.. .+++++++|+.++++ +++|
T Consensus 75 ~~~~~~~~~-~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~f 151 (299)
T 3g2m_A 75 FATRTGPVS-GPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRF 151 (299)
T ss_dssp HHHHHCCCC-SCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCE
T ss_pred HHHhhCCCC-CcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCc
Confidence 333444444 49999999999999999976 789999999999999999998765421 579999999999887 6889
Q ss_pred eEEEec-ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 170 DAVYAI-EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 170 D~v~~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
|+|++. .+++|++...... +++++.++|+|||.+++...+.
T Consensus 152 D~v~~~~~~~~~~~~~~~~~---------~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 152 GTVVISSGSINELDEADRRG---------LYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp EEEEECHHHHTTSCHHHHHH---------HHHHHHHHEEEEEEEEEEEECC
T ss_pred CEEEECCcccccCCHHHHHH---------HHHHHHHHcCCCcEEEEEeecC
Confidence 999976 5566665433322 6999999999999999987544
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.8e-17 Score=135.70 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=88.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC-----CCeeE
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD-----NSFDA 171 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~fD~ 171 (305)
.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++.. ..+++++++|+.+++... ..||+
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~ 127 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDAN 127 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCE
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccE
Confidence 3567889999999999999999976 4599999999999999998762 237999999998854321 24899
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|++..+++|++...... +++++.++|+|||.+++.+.
T Consensus 128 v~~~~~~~~~~~~~~~~---------~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 128 IYMRTGFHHIPVEKREL---------LGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp EEEESSSTTSCGGGHHH---------HHHHHHHHHTTTCEEEEEEE
T ss_pred EEEcchhhcCCHHHHHH---------HHHHHHHHcCCCCEEEEEeC
Confidence 99999999998543322 69999999999999888764
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=130.94 Aligned_cols=110 Identities=17% Similarity=0.165 Sum_probs=95.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..+...+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++...+.. +++++++|+...+.++++|
T Consensus 67 ~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 67 ARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccCCCc
Confidence 44555677888999999999999999999976 789999999999999999999887765 7999999998866567899
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
|+|++..+++|+++. +.+.|+|||.+++....
T Consensus 145 D~i~~~~~~~~~~~~-----------------~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPTA-----------------LMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCTH-----------------HHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhhHH-----------------HHHhcccCcEEEEEEcC
Confidence 999999999887653 67899999999997643
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=132.04 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=89.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc-c
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE-A 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 177 (305)
+++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|+++....+ .+++++++|+.+++++ ++||+|++.. +
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~-~~fD~v~~~~~~ 106 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP-EPVDAITILCDS 106 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS-SCEEEEEECTTG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC-CCcCEEEEeCCc
Confidence 45689999999999999999875 799999999999999999887655 4689999999988776 7899999986 9
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++|+.+.... ..+++++.++|+|||.+++...
T Consensus 107 ~~~~~~~~~~--------~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 107 LNYLQTEADV--------KQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp GGGCCSHHHH--------HHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcCCHHHH--------HHHHHHHHHhcCCCeEEEEEcC
Confidence 9999654332 1269999999999999998653
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-16 Score=139.45 Aligned_cols=171 Identities=16% Similarity=0.127 Sum_probs=118.5
Q ss_pred HHHHcC-CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 92 LALQLG-LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 92 l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+...+. ..+..+|||||||+|.++..+++ .++.+++++|+ +.+++.+++ .++++++.+|+.+ |++++
T Consensus 192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~-- 260 (364)
T 3p9c_A 192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFK-EVPSG-- 260 (364)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTT-CCCCC--
T ss_pred HHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCC-CCCCC--
Confidence 344444 66788999999999999999984 57889999999 888876543 2579999999987 77754
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHH
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRF 249 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 249 (305)
|+|++..++|++++.+... ++++++++|+|||.+++.+.........++ .......
T Consensus 261 D~v~~~~vlh~~~d~~~~~---------~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~---------------~~~~~~~ 316 (364)
T 3p9c_A 261 DTILMKWILHDWSDQHCAT---------LLKNCYDALPAHGKVVLVQCILPVNPEANP---------------SSQGVFH 316 (364)
T ss_dssp SEEEEESCGGGSCHHHHHH---------HHHHHHHHSCTTCEEEEEECCBCSSCCSSH---------------HHHHHHH
T ss_pred CEEEehHHhccCCHHHHHH---------HHHHHHHHcCCCCEEEEEEeccCCCCCcch---------------hhhhHHH
Confidence 9999999999999876543 699999999999999998854432110000 0000000
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 250 VTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
.++.......+-...+.+++..+++++||..++.. ......+++.+.|
T Consensus 317 --~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~--~~~~~~~vie~~k 364 (364)
T 3p9c_A 317 --VDMIMLAHNPGGRERYEREFQALARGAGFTGVKST--YIYANAWAIEFTK 364 (364)
T ss_dssp --HHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEE--EEETTEEEEEEEC
T ss_pred --hHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEE--EcCCceEEEEEeC
Confidence 11111101123344567899999999999988733 3334455665554
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-17 Score=138.17 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeEEEe--
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAVYA-- 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~-- 174 (305)
.+|.+|||||||+|..+..+++....+|+|||+|+.|++.|+++....+ .++.++.+|+... ++++++||.|+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccccccCCceEEEee
Confidence 4788999999999999999987645799999999999999999887654 3688999988753 577889999974
Q ss_pred ---cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 175 ---IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 175 ---~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
...++|.++... +++++.|+|||||.+++.
T Consensus 137 ~~~~~~~~~~~~~~~-----------~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 137 YPLSEETWHTHQFNF-----------IKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCBGGGTTTHHHHH-----------HHHTHHHHEEEEEEEEEC
T ss_pred eecccchhhhcchhh-----------hhhhhhheeCCCCEEEEE
Confidence 445666666655 599999999999998874
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.5e-17 Score=134.06 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=84.7
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC----CCCCCCCe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK----MPFPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~f 169 (305)
.+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++... .++.++++|+.. .+++ ++|
T Consensus 69 ~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~-~~~ 144 (230)
T 1fbn_A 69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIV-EKV 144 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-CCE
T ss_pred ccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccC-ccE
Confidence 345678899999999999999999965 3489999999999999999886543 579999999987 6766 789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+|+ ++++++.... .+++++.++|+|||.+++.
T Consensus 145 D~v~-----~~~~~~~~~~--------~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 145 DVIY-----EDVAQPNQAE--------ILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEE-----ECCCSTTHHH--------HHHHHHHHHEEEEEEEEEE
T ss_pred EEEE-----EecCChhHHH--------HHHHHHHHhCCCCcEEEEE
Confidence 9998 4455552211 1589999999999999886
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=139.70 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=92.3
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+...+.+.++.+|||||||+|.++..+++....+|+|+|+|+ |++.|++++...++.++++++++|+.++++++++|
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 44444455677889999999999999999976445999999997 99999999988888778999999999988888899
Q ss_pred eEEEeccc---ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 170 DAVYAIEA---TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 170 D~v~~~~~---l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
|+|++..+ +.+..+... ++.++.++|+|||.++
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~-----------~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDS-----------VLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHH-----------HHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccCHHHHHH-----------HHHHHHhhcCCCcEEE
Confidence 99998764 333333333 5889999999999887
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=126.42 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=94.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCC-CeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK-TCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 168 (305)
+.+...+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+... +++++++|+.+ +.++++
T Consensus 42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~ 119 (194)
T 1dus_A 42 KILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRK 119 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSC
T ss_pred HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCC
Confidence 34555667778899999999999999999977 8899999999999999999988877653 49999999987 345678
Q ss_pred eeEEEecccccccC-ChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAP-DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++...+++.. +... +++++.++|+|||.+++..
T Consensus 120 ~D~v~~~~~~~~~~~~~~~-----------~l~~~~~~L~~gG~l~~~~ 157 (194)
T 1dus_A 120 YNKIITNPPIRAGKEVLHR-----------IIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEEECCCSTTCHHHHHH-----------HHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEECCCcccchhHHHH-----------HHHHHHHHcCCCCEEEEEE
Confidence 99999988776522 2222 6999999999999999976
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=141.04 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=89.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.++.+|||||||+|.++..+++.+..+|+|+|+|+ |++.|++++...++.++++++++|+.++++++++||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 347789999999999999999976556999999995 9999999999988887899999999999888899999999765
Q ss_pred cccc---CChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 178 TCHA---PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 178 l~~~---~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
.+++ ..... ++.++.++|+|||.++.
T Consensus 143 ~~~l~~~~~~~~-----------~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 143 GYCLFYESMLNT-----------VLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BBTBTBTCCHHH-----------HHHHHHHHEEEEEEEES
T ss_pred cccccCchhHHH-----------HHHHHHHhCCCCCEEcc
Confidence 4444 33333 58889999999999874
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-17 Score=141.14 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc-----------------CCC------------
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA-----------------GVD------------ 149 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----------------~~~------------ 149 (305)
.++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|++++... +..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 367899999999999555444445789999999999999998865421 100
Q ss_pred CCeEEEEcCCCC-CCC-----CCCCeeEEEecccccccC----ChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 150 KTCNFVKADFMK-MPF-----PDNSFDAVYAIEATCHAP----DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 150 ~~~~~~~~d~~~-~~~-----~~~~fD~v~~~~~l~~~~----~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..++++++|+.. +|+ ++++||+|++..+++|++ +... +++++.++|||||.+++..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~-----------~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQR-----------ALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHH-----------HHHHHHTTEEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHH-----------HHHHHHHhcCCCCEEEEEE
Confidence 014677889987 553 346799999999999954 3333 6999999999999999974
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=131.66 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C--CCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P--FPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~fD~v~~~ 175 (305)
++.+|||||||+|.++..+++ .++..|+|+|+|+.+++.|++++...++. ++.++++|+.++ + +++++||.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 567999999999999999995 46789999999999999999999887765 699999998873 3 678999999987
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+...+....... ..+....+++++.++|+|||.+++.+
T Consensus 113 ~~~p~~~~~~~~---rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 113 FPDPWHKARHNK---RRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp SCCCCCSGGGGG---GSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccchhhhh---hhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 543332222110 00001126999999999999999875
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.7e-17 Score=141.94 Aligned_cols=123 Identities=11% Similarity=0.241 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHH-------HhcCC-CCCeEEEE
Q 042544 86 KRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELN-------RFAGV-DKTCNFVK 156 (305)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~-------~~~~~-~~~~~~~~ 156 (305)
......++..+.+.++.+|||||||+|..++.++...++ +|+|||+|+.+++.|++++ ...|+ ..+++|++
T Consensus 159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~ 238 (438)
T 3uwp_A 159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238 (438)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 334445666778899999999999999999999954455 5999999999999998754 33454 25899999
Q ss_pred cCCCCCCCCC--CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 157 ADFMKMPFPD--NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 157 ~d~~~~~~~~--~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+|+.++++++ ..||+|+++..+ +.++... .+.++.+.|||||.+++.+....
T Consensus 239 GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~-----------aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 239 GDFLSEEWRERIANTSVIFVNNFA-FGPEVDH-----------QLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp CCTTSHHHHHHHHTCSEEEECCTT-CCHHHHH-----------HHHHHHTTSCTTCEEEESSCSSC
T ss_pred CcccCCccccccCCccEEEEcccc-cCchHHH-----------HHHHHHHcCCCCcEEEEeecccC
Confidence 9999877643 469999987665 3344433 58899999999999998765443
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=149.13 Aligned_cols=117 Identities=15% Similarity=0.287 Sum_probs=96.8
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhc------CCCCCeEEEEcCCCCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFA------GVDKTCNFVKADFMKM 162 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~~~~~~d~~~~ 162 (305)
++...+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|++++... +. .+++++++|+.++
T Consensus 712 ~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dL 790 (950)
T 3htx_A 712 YALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEF 790 (950)
T ss_dssp HHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSC
T ss_pred HHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhC
Confidence 34444444578899999999999999999753 279999999999999999876532 23 3799999999999
Q ss_pred CCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 163 PFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 163 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
++++++||+|++..+++|++++.... +++++.++|+|| .+++.+.+
T Consensus 791 p~~d~sFDlVV~~eVLeHL~dp~l~~---------~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 791 DSRLHDVDIGTCLEVIEHMEEDQACE---------FGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp CTTSCSCCEEEEESCGGGSCHHHHHH---------HHHHHHHTTCCS-EEEEEECB
T ss_pred CcccCCeeEEEEeCchhhCChHHHHH---------HHHHHHHHcCCC-EEEEEecC
Confidence 99889999999999999999876532 589999999999 77777643
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=131.01 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=85.7
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC---CCCCCCCe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK---MPFPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~f 169 (305)
.++++||.+|||+|||+|.++..+++. +.++|+|+|+|+.|++.+++++... .++..+.+|... .++..+++
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~v 148 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEGV 148 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCCE
T ss_pred hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccceE
Confidence 467899999999999999999999965 5689999999999999998876543 478999998875 34567889
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++.. .+..+... ++.++.+.|||||.+++..
T Consensus 149 DvVf~d~--~~~~~~~~-----------~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 149 DGLYADV--AQPEQAAI-----------VVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEEECC--CCTTHHHH-----------HHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEec--cCChhHHH-----------HHHHHHHhccCCCEEEEEE
Confidence 9998642 23233322 6999999999999999864
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=128.22 Aligned_cols=112 Identities=19% Similarity=0.219 Sum_probs=90.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCeeEEE
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSFDAVY 173 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~ 173 (305)
.+.++.+|||+|||+|.++..+++. +.++|+|+|+|+.+++.|++++...++..+++++++|+..++ +.+++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 4567889999999999999999965 457999999999999999999998887668999999998765 5568999999
Q ss_pred ecccccccC------ChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAP------DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+...+.... ..... ..+++++.++|+|||.+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETT--------IQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHH--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCCcccCcccccccCcccH--------HHHHHHHHHhCcCCCEEEEEE
Confidence 876541111 11100 126999999999999999875
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=128.18 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=87.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEec
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~ 175 (305)
.++.+|||||||+|.++..+++ .++.+|+|+|+|+.+++.|++++...++ .++.++++|+..++ +++++||.|++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 3577999999999999999995 4678999999999999999999988776 47999999998865 677899999875
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+....... ..+....+++++.++|+|||.+++.+
T Consensus 116 ~~~p~~~~~~~~---~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 116 FSDPWPKKRHEK---RRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp SCCCCCSGGGGG---GSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCcCccccc---cccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 433222111100 00011236999999999999999865
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-16 Score=127.50 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=89.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEec
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~ 175 (305)
.++.+|||||||+|.++..++.. ++.+|+|+|+|+.+++.|++++...++ .++.++++|+..++ +++++||+|++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 35789999999999999999954 578999999999999999999988877 58999999999876 777899999988
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+........ .+....+++++.++|+|||.+++..
T Consensus 119 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 119 FSDPWPKKRHEKR---RLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp SCCCCCSGGGGGG---STTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCccccchhhh---ccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 6533222111000 0011236999999999999998865
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-16 Score=129.58 Aligned_cols=91 Identities=10% Similarity=0.122 Sum_probs=78.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC-CCCCCC-CCCeeEEEecc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF-MKMPFP-DNSFDAVYAIE 176 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~-~~~fD~v~~~~ 176 (305)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ ..+++++++|+ ..+|++ +++||+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~~~~fD~v~~~- 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGLGAPFGLIVSR- 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTCCCCEEEEEEE-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcCCCCEEEEEeC-
Confidence 57789999999999999999976 78999999999999999887 24689999999 568887 8899999987
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
.+... +++++.++|+|||.++
T Consensus 119 -----~~~~~-----------~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 -----RGPTS-----------VILRLPELAAPDAHFL 139 (226)
T ss_dssp -----SCCSG-----------GGGGHHHHEEEEEEEE
T ss_pred -----CCHHH-----------HHHHHHHHcCCCcEEE
Confidence 23222 6899999999999988
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=129.30 Aligned_cols=106 Identities=20% Similarity=0.347 Sum_probs=88.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
++++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+. ++.++++|+..+++++++||+|++.
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~-- 101 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSI-- 101 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEE--
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEE--
Confidence 3466 9999999999999999976 78999999999999999999877654 6899999999988888899999985
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+.|++...... +++++.++|+|||.+++.+..
T Consensus 102 ~~~~~~~~~~~---------~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 102 FCHLPSSLRQQ---------LYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp CCCCCHHHHHH---------HHHHHHTTCCSSEEEEEEEEC
T ss_pred hhcCCHHHHHH---------HHHHHHHhcCCCcEEEEEEec
Confidence 34554332222 699999999999999998754
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=129.46 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=89.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++... ..+++++++|+..+++++++||+|++..++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKLDFPSASFDVVLEKGTL 117 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSCCSCSSCEEEEEEESHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcCCCCCCcccEEEECcch
Confidence 67789999999999999999976334999999999999999988653 247999999999988888899999999888
Q ss_pred cccCC-------------hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 179 CHAPD-------------AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 179 ~~~~~-------------~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++.. ... ..+++++.++|+|||.+++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 118 DALLAGERDPWTVSSEGVHTV---------DQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HHHTTTCSCTTSCCHHHHHHH---------HHHHHHHHHHEEEEEEEEEEES
T ss_pred hhhccccccccccccchhHHH---------HHHHHHHHHhCcCCCEEEEEeC
Confidence 77651 111 1269999999999999999763
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.4e-17 Score=127.87 Aligned_cols=104 Identities=12% Similarity=0.107 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
++..+|||+|||+|.++..++ ..++++|+++|+|+.|++.+++++...|...++++ .|.... .+.++||+|++..+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-VYKGTYDVVFLLKM 124 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-HTTSEEEEEEEETC
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-CCCCCcChhhHhhH
Confidence 456799999999999999998 45678999999999999999999998887655655 666543 34688999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++.+.+. .+.++.+.|+|||.++-..
T Consensus 125 LHlL~~~~~-----------al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 125 LPVLKQQDV-----------NILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHHHTTC-----------CHHHHHHTCEEEEEEEEEE
T ss_pred HHhhhhhHH-----------HHHHHHHHhCCCCEEEEeC
Confidence 999943333 5779999999999877654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-16 Score=131.25 Aligned_cols=108 Identities=24% Similarity=0.344 Sum_probs=83.2
Q ss_pred CCCeEEEEcCCC--ChHHHHHHh--hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CC--CCCe
Q 042544 100 SGQKVLDVGCGI--GGPLREIAQ--FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FP--DNSF 169 (305)
Q Consensus 100 ~~~~vLDiGcG~--G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~--~~~f 169 (305)
...+|||||||+ +..+..+++ .++++|+++|.|+.|++.|++++...+ ..+++++++|+.+++ .+ .+.|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhccccccccc
Confidence 336899999997 445566653 378999999999999999999876432 246999999998742 11 2445
Q ss_pred e-----EEEecccccccCChhh-hhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 170 D-----AVYAIEATCHAPDAAE-IEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 170 D-----~v~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
| +|+++.++||+++.+. .. +++++.+.|+|||++++.+.
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~---------~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVG---------IVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHH---------HHHHHHTTSCTTCEEEEEEE
T ss_pred CcCCcchHHhhhhHhcCCchhhHHH---------HHHHHHHhCCCCcEEEEEec
Confidence 5 6888999999998642 11 69999999999999999863
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=130.37 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=86.9
Q ss_pred CCCeEEEEcCCC---ChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----------C
Q 042544 100 SGQKVLDVGCGI---GGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----------F 164 (305)
Q Consensus 100 ~~~~vLDiGcG~---G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 164 (305)
...+|||||||+ |.++..+++ .++.+|+++|+|+.|++.|++++.. ..+++++++|+.+.+ +
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhccC
Confidence 457999999999 988776664 3678999999999999999998743 357999999997521 2
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+.++||+|++..++||+++..... +++++.++|+|||.+++.+.
T Consensus 154 d~~~~d~v~~~~vlh~~~d~~~~~---------~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPDVVDR---------VVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTTTHHH---------HHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCCEEEEEechhhhCCcHHHHH---------HHHHHHHhCCCCcEEEEEEe
Confidence 335899999999999999853322 69999999999999999874
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-16 Score=138.36 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=96.6
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
.+.+...+...++.+|||||||+|.++..+++....+|+|+|+|+ |++.|+++++..++.++++++++|+.+++++ ++
T Consensus 39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~ 116 (348)
T 2y1w_A 39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQ 116 (348)
T ss_dssp HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SC
T ss_pred HHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-Cc
Confidence 344555556668899999999999999999876456999999996 8899999998888877899999999988765 67
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++..+++|+....... .+.++.++|+|||.+++..
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~---------~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLE---------SYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHH---------HHHHGGGGEEEEEEEESCE
T ss_pred eeEEEEeCchhcCChHHHHH---------HHHHHHhhcCCCeEEEEec
Confidence 99999998888887554322 5778899999999988643
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-16 Score=138.45 Aligned_cols=118 Identities=15% Similarity=0.091 Sum_probs=94.7
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
.+.+...+.+.++.+|||||||+|.++..+++....+|+|+|+| .|++.|++++...++.++++++++|+.+++++ ++
T Consensus 52 ~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 129 (376)
T 3r0q_C 52 FNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EK 129 (376)
T ss_dssp HHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SC
T ss_pred HHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-Cc
Confidence 34444455667889999999999999999997633499999999 99999999999988888899999999998876 88
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++..+.+++...... ..++.++.++|+|||.+++..
T Consensus 130 ~D~Iv~~~~~~~l~~e~~~--------~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 130 VDVIISEWMGYFLLRESMF--------DSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp EEEEEECCCBTTBTTTCTH--------HHHHHHHHHHEEEEEEEESSE
T ss_pred ceEEEEcChhhcccchHHH--------HHHHHHHHhhCCCCeEEEEec
Confidence 9999996655555322111 115888899999999987754
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-16 Score=132.65 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=92.3
Q ss_pred HHHHcCCC-CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCC
Q 042544 92 LALQLGLK-SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNS 168 (305)
Q Consensus 92 l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 168 (305)
+...+.+. ++.+|||+|||+|.++..++.....+|+|+|+++.+++.|++++...++.++++++++|+.+++ +++++
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 119 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKER 119 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTC
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCC
Confidence 44466777 8899999999999999999976455999999999999999999999888878999999998864 55789
Q ss_pred eeEEEeccccccc-----CChhhh-hhcCC---CCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHA-----PDAAEI-EIGDG---LPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~-----~~~~~~-~~~~~---~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|+++..+... ..+... ..... .....+++.+.++|+|||.+++..
T Consensus 120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 9999996544322 111000 00000 000126889999999999999853
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=136.20 Aligned_cols=172 Identities=16% Similarity=0.122 Sum_probs=117.8
Q ss_pred HHHHHcC-CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 91 FLALQLG-LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 91 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
.+...++ +.++.+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ..+++++.+|+.+ ++++
T Consensus 199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~-- 267 (372)
T 1fp1_D 199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP-------LSGIEHVGGDMFA-SVPQ-- 267 (372)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTT-CCCC--
T ss_pred HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh-------cCCCEEEeCCccc-CCCC--
Confidence 3444454 66778999999999999999995 46789999999 999887654 1469999999987 6664
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHH
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGR 248 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 248 (305)
||+|++..++||++++.... ++++++++|+|||.+++.+.........++ ......
T Consensus 268 ~D~v~~~~~lh~~~d~~~~~---------~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~---------------~~~~~~ 323 (372)
T 1fp1_D 268 GDAMILKAVCHNWSDEKCIE---------FLSNCHKALSPNGKVIIVEFILPEEPNTSE---------------ESKLVS 323 (372)
T ss_dssp EEEEEEESSGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEEEEECSSCCSSH---------------HHHHHH
T ss_pred CCEEEEecccccCCHHHHHH---------HHHHHHHhcCCCCEEEEEEeccCCCCccch---------------HHHHHH
Confidence 99999999999999887433 699999999999999998755432110000 000011
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 249 FVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
....... . ..+-...+.+++..+++++||..+..... ...+..++.++|
T Consensus 324 ~~d~~~~--~-~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~vie~~~ 372 (372)
T 1fp1_D 324 TLDNLMF--I-TVGGRERTEKQYEKLSKLSGFSKFQVACR-AFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHH--H-HHSCCCEEHHHHHHHHHHTTCSEEEEEEE-ETTTEEEEEEEC
T ss_pred HhhHHHH--h-ccCCccCCHHHHHHHHHHCCCceEEEEEc-CCCCeEEEEEeC
Confidence 1111111 0 12234456789999999999988773321 112135666664
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.65 E-value=9.9e-16 Score=128.67 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=86.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC---CCCeeEEE
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP---DNSFDAVY 173 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD~v~ 173 (305)
+.++.+|||||||+|..+..++. .++.+|+|+|+|+.|++.|++++...++. +++++++|+.+++++ +++||+|+
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVT 146 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEE
Confidence 35778999999999999999984 46789999999999999999999888875 599999999887653 57899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+..+ .+... +++++.++|+|||.+++..
T Consensus 147 ~~~~----~~~~~-----------~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 147 ARAV----ARLSV-----------LSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp EECC----SCHHH-----------HHHHHGGGEEEEEEEEEEE
T ss_pred Eecc----CCHHH-----------HHHHHHHhcCCCCEEEEEe
Confidence 8762 33333 5899999999999998853
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.9e-16 Score=134.87 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=88.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
.+.++.+|||||||+|.++..+++....+|+|+|+| .|++.|++++...++.++++++++|+.++++++++||+|++..
T Consensus 35 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~ 113 (328)
T 1g6q_1 35 DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEW 113 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECC
T ss_pred hhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeC
Confidence 345678999999999999999987644699999999 5999999999988887789999999999888878999999976
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
+.+++...... ..++.++.++|+|||.++.
T Consensus 114 ~~~~l~~~~~~--------~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 114 MGYFLLYESMM--------DTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CBTTBSTTCCH--------HHHHHHHHHHEEEEEEEES
T ss_pred chhhcccHHHH--------HHHHHHHHhhcCCCeEEEE
Confidence 54443322111 1158888999999999874
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-16 Score=136.01 Aligned_cols=112 Identities=19% Similarity=0.184 Sum_probs=90.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcC------CCCCeEEEEcCCCCCC----CC--C
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAG------VDKTCNFVKADFMKMP----FP--D 166 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~------~~~~~~~~~~d~~~~~----~~--~ 166 (305)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.|+++....+ ...+++++++|+..++ ++ +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 4678999999999999999987557899999999999999999876542 2236899999999875 53 4
Q ss_pred CCeeEEEeccccccc-CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 167 NSFDAVYAIEATCHA-PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
++||+|++..+++|+ .+.... ..+++++.++|+|||.+++...+
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~--------~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQA--------DMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHH--------HHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHH--------HHHHHHHHHHhCCCcEEEEecCC
Confidence 589999999999998 443221 12699999999999999998753
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=127.52 Aligned_cols=109 Identities=20% Similarity=0.296 Sum_probs=93.9
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
.+...+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++...++.++++++++|+.+. +++++
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~ 162 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEEN 162 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCS
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCC
Confidence 4555778889999999999999999999965 47899999999999999999999888876799999999864 66788
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++ +.+++.. +++++.++|+|||.+++..
T Consensus 163 ~D~v~~-----~~~~~~~-----------~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 163 VDHVIL-----DLPQPER-----------VVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp EEEEEE-----CSSCGGG-----------GHHHHHHHEEEEEEEEEEE
T ss_pred cCEEEE-----CCCCHHH-----------HHHHHHHHcCCCCEEEEEE
Confidence 999987 4455543 6999999999999999865
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=129.25 Aligned_cols=123 Identities=13% Similarity=0.241 Sum_probs=89.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
+.+...+. .++.+|||+|||+|..+..++. .++.+|+|+|+|+.+++.+++++...+.. +++++++|+... +++++
T Consensus 100 ~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~-~~~~~ 176 (276)
T 2b3t_A 100 EQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSA-LAGQQ 176 (276)
T ss_dssp HHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGG-GTTCC
T ss_pred HHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhh-cccCC
Confidence 34444444 5678999999999999999994 46789999999999999999999888765 799999999873 44678
Q ss_pred eeEEEecc-------------cccccCChhhhhhcCCCC-CcccHHHHHHHHHhCCceEEE
Q 042544 169 FDAVYAIE-------------ATCHAPDAAEIEIGDGLP-DIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 169 fD~v~~~~-------------~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~~~i~ 215 (305)
||+|++.. +++|.|......-..++. ...+++++.++|+|||.+++.
T Consensus 177 fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 177 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999973 333333221100000000 012578888999999999885
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=126.79 Aligned_cols=107 Identities=24% Similarity=0.254 Sum_probs=89.6
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..+...+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+ +++++++|+.....++++|
T Consensus 60 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccCCCc
Confidence 34555677788999999999999999999976 5899999999999999999886554 6999999998732246789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|+|++..+++|++ .++.++|+|||.+++...
T Consensus 136 D~v~~~~~~~~~~-----------------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 136 DRVVVWATAPTLL-----------------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp EEEEESSBBSSCC-----------------HHHHHTEEEEEEEEEEEC
T ss_pred cEEEECCcHHHHH-----------------HHHHHHcCCCcEEEEEEc
Confidence 9999999988755 347789999999999864
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=129.70 Aligned_cols=108 Identities=19% Similarity=0.324 Sum_probs=89.7
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhc-CCCCCeEEEEcCCCCCCCCCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFA-GVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~ 167 (305)
.+...+.+.++.+|||+|||+|.++..+++. ++.+|+|+|+++.+++.|++++... +. .+++++++|+.+ +++++
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~-~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD-FISDQ 178 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-CCCSC
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-cCcCC
Confidence 4445667888999999999999999999964 4789999999999999999998876 63 479999999987 56678
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|++ +++++.. +++++.++|+|||.+++.+
T Consensus 179 ~fD~Vi~-----~~~~~~~-----------~l~~~~~~LkpgG~l~i~~ 211 (275)
T 1yb2_A 179 MYDAVIA-----DIPDPWN-----------HVQKIASMMKPGSVATFYL 211 (275)
T ss_dssp CEEEEEE-----CCSCGGG-----------SHHHHHHTEEEEEEEEEEE
T ss_pred CccEEEE-----cCcCHHH-----------HHHHHHHHcCCCCEEEEEe
Confidence 8999997 5666544 6999999999999999976
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=122.93 Aligned_cols=154 Identities=15% Similarity=0.077 Sum_probs=102.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCee
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSFD 170 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD 170 (305)
+.+.++.+|||+|||+|.++..+++. +.++|+|+|+|+.|++...+.+... .++.++++|+.... ...++||
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D 148 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVD 148 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEE
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceE
Confidence 34789999999999999999999964 4679999999999976554444332 47999999997632 1246899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHH
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFV 250 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 250 (305)
+|++..+. ++.... +...+.+.|||||.+++....-. ..+ ...+.
T Consensus 149 ~I~~d~a~---~~~~~i----------l~~~~~~~LkpGG~lvisik~~~----~d~--t~~~~---------------- 193 (232)
T 3id6_C 149 VLYVDIAQ---PDQTDI----------AIYNAKFFLKVNGDMLLVIKARS----IDV--TKDPK---------------- 193 (232)
T ss_dssp EEEECCCC---TTHHHH----------HHHHHHHHEEEEEEEEEEEC-------------CCSS----------------
T ss_pred EEEecCCC---hhHHHH----------HHHHHHHhCCCCeEEEEEEccCC----ccc--CCCHH----------------
Confidence 99987543 333221 34556669999999999742110 000 00000
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCccccccc-ceEEEEEcC
Q 042544 251 TRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTP-MYFFLARKP 302 (305)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~arKp 302 (305)
....+....+++.+|++.+......|.. .++++|+|+
T Consensus 194 ---------------e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 194 ---------------EIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYK 231 (232)
T ss_dssp ---------------SSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEEC
T ss_pred ---------------HHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEeC
Confidence 0012455677777888877655555533 457888875
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-16 Score=128.18 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCC-
Q 042544 87 RHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKM- 162 (305)
Q Consensus 87 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~- 162 (305)
.....+....+..++.+|||||||+|..+..+++. ++++|+++|+|+.+++.|++++...++. ++++++++|+.+.
T Consensus 43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l 122 (221)
T 3dr5_A 43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM 122 (221)
T ss_dssp HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence 34444555555555669999999999999999964 3689999999999999999999998887 7899999998763
Q ss_pred C-CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 163 P-FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 163 ~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+ +++++||+|++.....+ ... +++++.++|+|||.+++.+
T Consensus 123 ~~~~~~~fD~V~~d~~~~~---~~~-----------~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 123 SRLANDSYQLVFGQVSPMD---LKA-----------LVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp GGSCTTCEEEEEECCCTTT---HHH-----------HHHHHHHHEEEEEEEEETT
T ss_pred HHhcCCCcCeEEEcCcHHH---HHH-----------HHHHHHHHcCCCcEEEEeC
Confidence 2 34688999997643221 111 5899999999999998844
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-15 Score=125.82 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=93.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhc-CCCCCeEEEEcCCCCCCCCCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFA-GVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~ 167 (305)
.+...+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++... + ..+++++++|+.+.+++++
T Consensus 87 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~~ 165 (258)
T 2pwy_A 87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEEA 165 (258)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCTT
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCCC
Confidence 4555677889999999999999999999965 3689999999999999999998876 6 4579999999998878788
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|++ +.+++.. +++++.++|+|||.+++..
T Consensus 166 ~~D~v~~-----~~~~~~~-----------~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 166 AYDGVAL-----DLMEPWK-----------VLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp CEEEEEE-----ESSCGGG-----------GHHHHHHHEEEEEEEEEEE
T ss_pred CcCEEEE-----CCcCHHH-----------HHHHHHHhCCCCCEEEEEe
Confidence 9999997 3455533 6999999999999999976
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-17 Score=137.77 Aligned_cols=103 Identities=19% Similarity=0.277 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++..+++++++|+.+++ ++++||+|++...+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 36789999999999999999976 69999999999999999999998887668999999998866 56789999999888
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
++..+... .+.++.++|+|||.+++
T Consensus 155 ~~~~~~~~-----------~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 155 GGPDYATA-----------ETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp SSGGGGGS-----------SSBCTTTSCSSCHHHHH
T ss_pred CCcchhhh-----------HHHHHHhhcCCcceeHH
Confidence 88766543 23445566666666444
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=124.84 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=87.7
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCCCCCeeEEE
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFPDNSFDAVY 173 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~ 173 (305)
..++++.+|||+||| +|.++..+++..+.+|+|+|+|+.+++.|++++...+. +++++++|+..+ ++++++||+|+
T Consensus 51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIF 128 (230)
T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEE
T ss_pred hhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEE
Confidence 345688999999999 99999999965478999999999999999999988876 699999997542 45578999999
Q ss_pred ecccccccCChhhhh----hcCCCC----CcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIE----IGDGLP----DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~----~~~~~~----~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+...+.+.++..... +..+.. ...+++++.++|+|||.+++..
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL 179 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 887665544321100 000000 0226889999999999998864
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-15 Score=119.67 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=89.6
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..+...+.+.++.+|||+|||+|.++..+++ ++.+|+|+|+|+.+++.+++++...++ .+++++++|+.+ ++++++|
T Consensus 25 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~-~~~~~~~ 101 (183)
T 2yxd_A 25 AVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED-VLDKLEF 101 (183)
T ss_dssp HHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-HGGGCCC
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-cccCCCC
Confidence 3445566777889999999999999999998 688999999999999999999988876 479999999987 6666789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++..+ .+... +++++.++ |||.+++..
T Consensus 102 D~i~~~~~----~~~~~-----------~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 102 NKAFIGGT----KNIEK-----------IIEILDKK--KINHIVANT 131 (183)
T ss_dssp SEEEECSC----SCHHH-----------HHHHHHHT--TCCEEEEEE
T ss_pred cEEEECCc----ccHHH-----------HHHHHhhC--CCCEEEEEe
Confidence 99999887 23322 57778777 999999875
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=123.41 Aligned_cols=111 Identities=18% Similarity=0.201 Sum_probs=92.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC-CC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD-NS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~ 168 (305)
..+...+.+.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++++...+...++.++++|+.+ ++++ ++
T Consensus 23 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~ 100 (192)
T 1l3i_A 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPD 100 (192)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCC
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCC
Confidence 344455677889999999999999999999763 89999999999999999999888775689999999876 2333 58
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++..+++++ .. +++++.++|+|||.+++..
T Consensus 101 ~D~v~~~~~~~~~---~~-----------~l~~~~~~l~~gG~l~~~~ 134 (192)
T 1l3i_A 101 IDIAVVGGSGGEL---QE-----------ILRIIKDKLKPGGRIIVTA 134 (192)
T ss_dssp EEEEEESCCTTCH---HH-----------HHHHHHHTEEEEEEEEEEE
T ss_pred CCEEEECCchHHH---HH-----------HHHHHHHhcCCCcEEEEEe
Confidence 9999998776543 22 5999999999999999865
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-16 Score=127.51 Aligned_cols=108 Identities=14% Similarity=0.019 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCCC--CCCCC-eeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKMP--FPDNS-FDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~--~~~~~-fD~v~~~ 175 (305)
++.+|||+|||+|.++..++.....+|+|+|+|+.|++.|++++...++. ++++++++|+.++. .++++ ||+|++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 57899999999999999877653469999999999999999999888763 57999999987642 23678 9999987
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHH--HHHHHhCCceEEEeccC
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKC--LEALKQAGFEVIWEKDL 219 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~--~~~L~~gG~~~i~~~~~ 219 (305)
..++ ..+... .++.+ .++|+|||.+++.....
T Consensus 133 ~~~~-~~~~~~-----------~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH-FNLAEQ-----------AISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS-SCHHHH-----------HHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC-CccHHH-----------HHHHHHhcCccCCCcEEEEEECCC
Confidence 7643 333222 46677 45699999999876543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=135.08 Aligned_cols=163 Identities=15% Similarity=0.170 Sum_probs=112.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
+.++.+|||||||+|.++..+++ .++.+++++|+ +.+++.+++ . .+++++.+|+.+ ++++ ||+|++..
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~p~--~D~v~~~~ 254 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFT-SIPN--ADAVLLKY 254 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTT-CCCC--CSEEEEES
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-CCcEEEeccccC-CCCC--ccEEEeeh
Confidence 45678999999999999999995 46789999999 999987654 1 359999999976 5653 99999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHh---CCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHH
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQ---AGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRN 253 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 253 (305)
++||+++..... ++++++++|+| ||.+++.+.........+ ............
T Consensus 255 ~lh~~~d~~~~~---------~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~---------------~~~~~~~~~d~~ 310 (352)
T 1fp2_A 255 ILHNWTDKDCLR---------ILKKCKEAVTNDGKRGKVTIIDMVIDKKKDEN---------------QVTQIKLLMDVN 310 (352)
T ss_dssp CGGGSCHHHHHH---------HHHHHHHHHSGGGCCCEEEEEECEECTTTSCH---------------HHHHHHHHHHHH
T ss_pred hhccCCHHHHHH---------HHHHHHHhCCCCCCCcEEEEEEeecCCCCCcc---------------chhhhHhhccHH
Confidence 999999887433 69999999999 999999875433211000 000011111100
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 254 MVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
.. . ..-...+.+++..+++++||..+.... ......++.++|
T Consensus 311 ~~---~-~~g~~~t~~e~~~ll~~aGf~~~~~~~--~~~~~~vie~~~ 352 (352)
T 1fp2_A 311 MA---C-LNGKERNEEEWKKLFIEAGFQHYKISP--LTGFLSLIEIYP 352 (352)
T ss_dssp GG---G-GTCCCEEHHHHHHHHHHTTCCEEEEEE--EETTEEEEEEEC
T ss_pred HH---h-ccCCCCCHHHHHHHHHHCCCCeeEEEe--cCCCcEEEEEeC
Confidence 00 0 112234568999999999998877332 233345666654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-16 Score=125.70 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=89.2
Q ss_pred HHHHHcC-CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCC
Q 042544 91 FLALQLG-LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNS 168 (305)
Q Consensus 91 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~ 168 (305)
.+...+. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++...++.++++++++|+.+ ++..+++
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 100 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGR 100 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSC
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCC
Confidence 3333444 5678899999999999999999765579999999999999999999888776689999999977 3433467
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHH--HHHHhCCceEEEecc
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCL--EALKQAGFEVIWEKD 218 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~~~i~~~~ 218 (305)
||+|++...++. ..... .++.+. ++|+|||.+++....
T Consensus 101 fD~i~~~~~~~~-~~~~~-----------~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 101 FDLVFLDPPYAK-ETIVA-----------TIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp EEEEEECCSSHH-HHHHH-----------HHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCEEEECCCCCc-chHHH-----------HHHHHHhCCCcCCCcEEEEEECC
Confidence 999998765432 11111 366665 889999999997643
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.6e-15 Score=123.83 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=86.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC---CCCeeEEE
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP---DNSFDAVY 173 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD~v~ 173 (305)
..++.+|||||||+|..+..++. .++.+|+++|+|+.+++.|++++...++. +++++++|+++++.. +++||+|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEE
Confidence 35678999999999999999995 46889999999999999999999988875 599999999886542 47899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+..+ .+... +++.+.++|+|||.+++..
T Consensus 157 s~a~----~~~~~-----------ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 157 ARAV----APLCV-----------LSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp EESS----CCHHH-----------HHHHHGGGEEEEEEEEEEE
T ss_pred ECCc----CCHHH-----------HHHHHHHHcCCCeEEEEEe
Confidence 8653 23322 5888999999999988754
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-16 Score=130.87 Aligned_cols=107 Identities=16% Similarity=0.252 Sum_probs=87.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-CCCCCeeEE
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-FPDNSFDAV 172 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~fD~v 172 (305)
+...++.+|||||||+|..+..++.. ++.+|+++|+|+.+++.|++++...++.++++++++|+.+. + ..+++||+|
T Consensus 67 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V 146 (232)
T 3ntv_A 67 IRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMI 146 (232)
T ss_dssp HHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEE
T ss_pred HhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEE
Confidence 33446789999999999999999963 47899999999999999999999888877899999999773 3 336889999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++..... .... +++++.++|+|||.+++..
T Consensus 147 ~~~~~~~---~~~~-----------~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 147 FIDAAKA---QSKK-----------FFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp EEETTSS---SHHH-----------HHHHHGGGEEEEEEEEEEC
T ss_pred EEcCcHH---HHHH-----------HHHHHHHhcCCCeEEEEee
Confidence 9764322 2211 5899999999999998854
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=123.54 Aligned_cols=104 Identities=19% Similarity=0.150 Sum_probs=79.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCCCee
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDNSFD 170 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD 170 (305)
+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.+.+.++.. .++.++++|+... +++ ++||
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~-~~fD 128 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIV-EKVD 128 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTC-CCEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccc-ccee
Confidence 45678899999999999999999865 3479999999999887766655542 3688999998763 444 7899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++.. .. ++... .+++++.++|||||.+++..
T Consensus 129 ~V~~~~-~~--~~~~~----------~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 129 LIYQDI-AQ--KNQIE----------ILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp EEEECC-CS--TTHHH----------HHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEec-cC--hhHHH----------HHHHHHHHHhCCCCEEEEEE
Confidence 999862 11 11111 14899999999999999874
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-15 Score=127.31 Aligned_cols=111 Identities=15% Similarity=0.192 Sum_probs=93.8
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhc-C-CCCCeEEEEcCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFA-G-VDKTCNFVKADFMKMPFP 165 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~-~-~~~~~~~~~~d~~~~~~~ 165 (305)
..+...+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++... + +..+++++++|+.+.+++
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~ 168 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP 168 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC
Confidence 34455677889999999999999999999964 4689999999999999999998776 4 445799999999988777
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++||+|++ +.+++.. +++++.++|+|||.+++..
T Consensus 169 ~~~~D~v~~-----~~~~~~~-----------~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 169 DGSVDRAVL-----DMLAPWE-----------VLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp TTCEEEEEE-----ESSCGGG-----------GHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEE-----CCcCHHH-----------HHHHHHHhCCCCCEEEEEe
Confidence 889999997 3445433 6999999999999999976
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=133.95 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=93.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCC--CeEEEEcCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDK--TCNFVKADFMKMPFPD 166 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~~~~~~d~~~~~~~~ 166 (305)
..+...+...++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.+++++...++.. +++++++|+.+ ++++
T Consensus 212 ~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~ 290 (375)
T 4dcm_A 212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEP 290 (375)
T ss_dssp HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCT
T ss_pred HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCC
Confidence 34555666667789999999999999999954 57899999999999999999998877543 57889999987 5667
Q ss_pred CCeeEEEecccccccC---ChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAP---DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|++...+++.. +.... .+++++.++|+|||.+++..
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~---------~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAW---------EMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHH---------HHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHH---------HHHHHHHHhCCCCcEEEEEE
Confidence 8999999998877532 22111 25899999999999999965
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-16 Score=126.47 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=86.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++...+... ++++++|+.+. .+++||+|++...
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--~~~~fD~i~~~~~ 134 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLAD--VDGKFDLIVANIL 134 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTT--CCSCEEEEEEESC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEecccccc--CCCCceEEEECCc
Confidence 45788999999999999999987655699999999999999999998887754 99999999764 3588999999887
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++++. . +++++.++|+|||.+++.+
T Consensus 135 ~~~~~---~-----------~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 135 AEILL---D-----------LIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp HHHHH---H-----------HGGGSGGGEEEEEEEEEEE
T ss_pred HHHHH---H-----------HHHHHHHhcCCCCEEEEEe
Confidence 76542 1 5888999999999999864
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=127.43 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHh------cCCCCCeEEEEcCCCC-CC--CCCCC
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRF------AGVDKTCNFVKADFMK-MP--FPDNS 168 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~d~~~-~~--~~~~~ 168 (305)
.++.+|||||||+|.++..+++ .++..|+|+|+|+.|++.|++++.. .+. .++.++++|+.. ++ +++++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcC
Confidence 4667999999999999999995 4678999999999999999987654 233 479999999987 66 77899
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||.|++...-.+...... ...+....+++++.++|+|||.+++.+
T Consensus 124 ~D~v~~~~~dp~~k~~h~---krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKH---KWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEEESCC--------------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhh---hhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 999986543222111000 000011236999999999999999875
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=132.11 Aligned_cols=111 Identities=17% Similarity=0.210 Sum_probs=93.2
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
...+...+.+.++.+|||||||+|.++..+++. . ..+|+|+|+|+.+++.|++++...+.. +++++++|+.+.+.++
T Consensus 64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~~~ 142 (317)
T 1dl5_A 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPEF 142 (317)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG
T ss_pred HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhccccC
Confidence 345566778889999999999999999999964 2 357999999999999999999888775 5999999998855456
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++||+|++..+++|++ +++.+.|+|||.+++...
T Consensus 143 ~~fD~Iv~~~~~~~~~-----------------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 143 SPYDVIFVTVGVDEVP-----------------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CCEEEEEECSBBSCCC-----------------HHHHHHEEEEEEEEEEBC
T ss_pred CCeEEEEEcCCHHHHH-----------------HHHHHhcCCCcEEEEEEC
Confidence 7899999999998765 346789999999999754
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-15 Score=123.24 Aligned_cols=110 Identities=22% Similarity=0.230 Sum_probs=90.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
..+...+.+.++.+|||||||+|.++..+++..+ .+|+++|+|+.+++.+++++...+.. +++++++|+......++
T Consensus 67 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCGGGC
T ss_pred HHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCCCC
Confidence 3445566778899999999999999999996533 89999999999999999998877764 59999999865322257
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+||+|++..+++|++ +++.++|+|||.+++...
T Consensus 146 ~fD~v~~~~~~~~~~-----------------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIP-----------------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCC-----------------HHHHHTEEEEEEEEEEES
T ss_pred CeeEEEECCchHHHH-----------------HHHHHHcCCCcEEEEEEC
Confidence 899999999988755 357889999999999763
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-16 Score=124.16 Aligned_cols=110 Identities=16% Similarity=0.052 Sum_probs=86.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CCCCCeeEE
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FPDNSFDAV 172 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~v 172 (305)
...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.++++++++|+.+.. .++++||+|
T Consensus 41 ~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i 120 (187)
T 2fhp_A 41 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 120 (187)
T ss_dssp SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence 3457789999999999999998876557999999999999999999988877668999999987621 226789999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHH--HHHHHhCCceEEEecc
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKC--LEALKQAGFEVIWEKD 218 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~--~~~L~~gG~~~i~~~~ 218 (305)
++...++ ...... .+..+ .++|+|||.+++....
T Consensus 121 ~~~~~~~-~~~~~~-----------~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 121 LLDPPYA-KQEIVS-----------QLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp EECCCGG-GCCHHH-----------HHHHHHHTTCEEEEEEEEEEEET
T ss_pred EECCCCC-chhHHH-----------HHHHHHHhcccCCCCEEEEEeCC
Confidence 9987644 222222 35555 7789999999987644
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-16 Score=129.37 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=85.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCC-C----CCCee
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPF-P----DNSFD 170 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~-~----~~~fD 170 (305)
.++.+|||||||+|..+..+++. ++++|+++|+++.+++.|++++...++.++++++++|+.+ ++. + .++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 46789999999999999999964 3789999999999999999999988887789999999855 222 2 26899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++....++..+... .+..+ ++|+|||.+++.+
T Consensus 137 ~V~~d~~~~~~~~~~~-----------~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 137 MVFLDHWKDRYLPDTL-----------LLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp EEEECSCGGGHHHHHH-----------HHHHT-TCCCTTCEEEESC
T ss_pred EEEEcCCcccchHHHH-----------HHHhc-cccCCCeEEEEeC
Confidence 9998876666544322 36666 8999999998854
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.7e-16 Score=127.00 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=83.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHH----HhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELN----RFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~----~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
+.+.++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.+.+.+ ...+. ++++++++|+.++|+++++ |
T Consensus 23 l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-d 100 (218)
T 3mq2_A 23 LRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-G 100 (218)
T ss_dssp HHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-E
T ss_pred hhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-C
Confidence 34568889999999999999999954 5789999999999998643332 23333 3799999999999987766 7
Q ss_pred EEEecc---cc--cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIE---AT--CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~---~l--~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.|+... .. +|++++.. +++++.++|||||.+++..
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 101 ELHVLMPWGSLLRGVLGSSPE-----------MLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp EEEEESCCHHHHHHHHTSSSH-----------HHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEccchhhhhhhhccHHH-----------HHHHHHHHcCCCcEEEEEe
Confidence 776333 22 26666644 6999999999999999854
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=139.84 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
+.+.+...+...++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|++++...++.++++++++|+.+++++ +
T Consensus 146 ~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~ 223 (480)
T 3b3j_A 146 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-E 223 (480)
T ss_dssp HHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-S
T ss_pred HHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-C
Confidence 3444555555567889999999999999999876567999999998 9999999999888877899999999987765 5
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+||+|++..+++|+.+..... .+.++.++|+|||.+++.
T Consensus 224 ~fD~Ivs~~~~~~~~~e~~~~---------~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 224 QVDIIISEPMGYMLFNERMLE---------SYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CEEEEECCCCHHHHTCHHHHH---------HHHHGGGGEEEEEEEESC
T ss_pred CeEEEEEeCchHhcCcHHHHH---------HHHHHHHhcCCCCEEEEE
Confidence 899999988878776654432 577888999999998853
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=122.53 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
++.+|||+|||+|.++..++.. ++.+|+|+|+|+.+++.+++++...+.. +++++++|+.+.+ ++++||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP-SEPPFDGVISRAF- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC-CCSCEEEEECSCS-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCC-ccCCcCEEEEecc-
Confidence 4789999999999999999954 6789999999999999999999887765 4999999998865 4578999997542
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+... +++++.++|+|||.+++..
T Consensus 142 ---~~~~~-----------~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 142 ---ASLND-----------MVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SSHHH-----------HHHHHTTSEEEEEEEEEEE
T ss_pred ---CCHHH-----------HHHHHHHhcCCCcEEEEEe
Confidence 33322 5899999999999999864
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=124.43 Aligned_cols=106 Identities=10% Similarity=-0.025 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l 178 (305)
++.+|||+|||+|.++..++.....+|+|+|+|+.|++.|++++...++ .+++++++|+.+ ++..+++||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 5789999999999999987765346999999999999999999988877 579999999877 45556789999987663
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHH--HHHhCCceEEEecc
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLE--ALKQAGFEVIWEKD 218 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~~~i~~~~ 218 (305)
+ ...... .++.+.+ +|+|||.+++....
T Consensus 133 ~-~~~~~~-----------~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RGLLEE-----------TINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp S-TTTHHH-----------HHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C-CCcHHH-----------HHHHHHhcCccCCCcEEEEEECC
Confidence 3 333222 4666765 49999999987654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-15 Score=132.54 Aligned_cols=106 Identities=14% Similarity=0.172 Sum_probs=90.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+.. ++++++|+.+.+.++++||+|++...+
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~~~~~~fD~Ii~npp~ 308 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALTEEARFDIIVTNPPF 308 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTSCTTCCEEEEEECCCC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhccccCCCeEEEEECCch
Confidence 46789999999999999999976 789999999999999999999887754 899999999877666899999999888
Q ss_pred cccC---ChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAP---DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~---~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++.. ..... .+++++.++|+|||.+++..
T Consensus 309 ~~~~~~~~~~~~---------~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 309 HVGGAVILDVAQ---------AFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp CTTCSSCCHHHH---------HHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccccHHHHH---------HHHHHHHHhcCcCcEEEEEE
Confidence 8732 22211 26899999999999999975
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=128.46 Aligned_cols=125 Identities=16% Similarity=0.094 Sum_probs=90.2
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHh---cCCCCCeEEEEcCCCCC-----
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRF---AGVDKTCNFVKADFMKM----- 162 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~d~~~~----- 162 (305)
+...+...++.+|||+|||+|.++..++.. ++.+|+|+|+++.+++.|++++.. .++.++++++++|+.++
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~ 107 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARV 107 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHH
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhh
Confidence 334556677889999999999999999964 468999999999999999999887 77766799999999886
Q ss_pred --CCCCCCeeEEEecccccccCC---hhh---hhh-cCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 163 --PFPDNSFDAVYAIEATCHAPD---AAE---IEI-GDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 163 --~~~~~~fD~v~~~~~l~~~~~---~~~---~~~-~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++++++||+|++.-.+..... +.. ... ........+++.+.++|+|||.+++..
T Consensus 108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 356789999999743322110 000 000 000001126888999999999998854
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=141.53 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=92.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeEEEeccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAVYAIEA 177 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~~~ 177 (305)
.+.+|||||||+|.++..||+. |++|+|||+|+.+++.|+..+...+. .+++|.+++++++ ++++++||+|+|..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 4579999999999999999986 89999999999999999998877653 2699999999886 456789999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
++|++++.... .+..+.+.|+++|..++.....
T Consensus 144 ~ehv~~~~~~~---------~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 144 FHHIVHLHGID---------EVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHHHHHCHH---------HHHHHHHHHHHHSSEEEEECCC
T ss_pred hhcCCCHHHHH---------HHHHHHHHhccccceeeEEecc
Confidence 99999886532 3566788899999877765443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=128.84 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=85.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCC--CCCeeEE
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFP--DNSFDAV 172 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~--~~~fD~v 172 (305)
..++.+|||||||+|..+..+++. + +.+|+++|+|+.+++.|++++...++.++++++++|+.+ ++.. .++||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 346789999999999999999964 3 689999999999999999999998887789999999876 3322 3489999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++..... +.. .+++++.++|+|||.+++.+
T Consensus 141 ~~d~~~~---~~~-----------~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 141 FIDADKP---NNP-----------HYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp EECSCGG---GHH-----------HHHHHHHHTCCTTCEEEEEC
T ss_pred EECCchH---HHH-----------HHHHHHHHhcCCCeEEEEeC
Confidence 9854311 111 15999999999999988865
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=121.32 Aligned_cols=109 Identities=19% Similarity=0.293 Sum_probs=92.7
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
.+...+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++....++..+++++++|+.+...++++||
T Consensus 82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 160 (248)
T 2yvl_A 82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFH 160 (248)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBS
T ss_pred HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCccc
Confidence 4455677788999999999999999999977 889999999999999999999888776789999999988543567899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++ +.+++.. +++++.++|+|||.+++..
T Consensus 161 ~v~~-----~~~~~~~-----------~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 161 AAFV-----DVREPWH-----------YLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp EEEE-----CSSCGGG-----------GHHHHHHHBCTTCEEEEEE
T ss_pred EEEE-----CCcCHHH-----------HHHHHHHHcCCCCEEEEEe
Confidence 9997 3444433 6999999999999999976
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-15 Score=133.53 Aligned_cols=118 Identities=15% Similarity=0.097 Sum_probs=91.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHH-------HHHHHhcCCC-CCeEEEEcCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRG-------KELNRFAGVD-KTCNFVKADFM 160 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a-------~~~~~~~~~~-~~~~~~~~d~~ 160 (305)
..++..+.+.++.+|||||||+|.++..++.. +..+|+|+|+++.+++.| ++++...|+. .+++++++|..
T Consensus 232 ~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 232 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 44555678889999999999999999999964 446899999999999988 8888877743 58999998654
Q ss_pred CC--CC--CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 161 KM--PF--PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 161 ~~--~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
.. ++ ..++||+|++..++ +.++... .+.++.+.|+|||.+++.+...
T Consensus 312 ~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~-----------~L~el~r~LKpGG~lVi~d~f~ 362 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILVNNFL-FDEDLNK-----------KVEKILQTAKVGCKIISLKSLR 362 (433)
T ss_dssp TTCHHHHHHGGGCSEEEECCTT-CCHHHHH-----------HHHHHHTTCCTTCEEEESSCSS
T ss_pred ccccccccccCCCCEEEEeCcc-ccccHHH-----------HHHHHHHhCCCCeEEEEeeccC
Confidence 32 12 24689999987665 3343333 5889999999999999875433
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-15 Score=126.93 Aligned_cols=104 Identities=18% Similarity=0.152 Sum_probs=87.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.++++++++|+.+++. +++||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 3568899999999999999999763337999999999999999999988887779999999998765 688999988432
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.... .++.++.++|+|||.+++.+.
T Consensus 202 ----~~~~-----------~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 202 ----VRTH-----------EFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp ----SSGG-----------GGHHHHHHHEEEEEEEEEEEE
T ss_pred ----hhHH-----------HHHHHHHHHCCCCeEEEEEEe
Confidence 1111 269999999999999998763
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-15 Score=122.59 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=86.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEEcCCCCCCCCCCCeeE
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGV----DKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
+.++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.+++++...+. ..++.++++|+...+.++++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 6788999999999999999999653 37999999999999999998877553 34799999999875555678999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|++...+++ .++++.++|+|||.+++...
T Consensus 155 i~~~~~~~~-----------------~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPV-----------------VPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEECSBBSS-----------------CCHHHHHTEEEEEEEEEEES
T ss_pred EEECCchHH-----------------HHHHHHHhcCCCcEEEEEEe
Confidence 998877654 35678899999999999764
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=122.86 Aligned_cols=116 Identities=10% Similarity=0.070 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC---CCC---CCCeeEE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM---PFP---DNSFDAV 172 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~---~~~fD~v 172 (305)
++.+|||+|||+|.++..++. .++.+|+|+|+|+.|++.|++++...++..+++++++|+.+. +++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999885 357899999999999999999999888876799999997652 344 2689999
Q ss_pred EecccccccC-Chhhh---hhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAP-DAAEI---EIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~-~~~~~---~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
++...+++.. +.... ......+....+.++.++|+|||.+.+.
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 9986655433 10000 0000001122467788999999987664
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=129.42 Aligned_cols=107 Identities=12% Similarity=0.166 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCCCh----HHHHHHhh-c----CCeEEEEcCCHHHHHHHHHHHHh-----------------------cC
Q 042544 100 SGQKVLDVGCGIGG----PLREIAQF-S----STSVTGLNNNEYQITRGKELNRF-----------------------AG 147 (305)
Q Consensus 100 ~~~~vLDiGcG~G~----~~~~l~~~-~----~~~v~gvD~s~~~l~~a~~~~~~-----------------------~~ 147 (305)
++.+|||+|||||. .+..+++. + +.+|+|+|+|+.|++.|++.+.. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 45555543 2 35999999999999999986410 00
Q ss_pred -------CCCCeEEEEcCCCCCCCC-CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 148 -------VDKTCNFVKADFMKMPFP-DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 148 -------~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+..++.|.++|+.+.|++ .++||+|+|.+++.|++++...+ +++++.+.|+|||++++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~---------vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQED---------ILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHH---------HHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHH---------HHHHHHHHhCCCcEEEEE
Confidence 013689999999886665 57899999999999998765433 699999999999999884
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=124.57 Aligned_cols=110 Identities=25% Similarity=0.328 Sum_probs=93.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
..+...+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++...++..+++++++|+.+. ++++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~ 180 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEK 180 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCC
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCC
Confidence 34555678888999999999999999999964 46899999999999999999998877756899999999875 6667
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|++ +.+++.. +++++.++|+|||.+++.+
T Consensus 181 ~~D~V~~-----~~~~~~~-----------~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 181 DVDALFL-----DVPDPWN-----------YIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp SEEEEEE-----CCSCGGG-----------THHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEE-----CCcCHHH-----------HHHHHHHHcCCCCEEEEEe
Confidence 8999997 3455433 6999999999999999976
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-15 Score=126.36 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=87.5
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhc---CCCCC-------------
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFA---GVDKT------------- 151 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~------------- 151 (305)
.+...+...++.+|||+|||+|.++..++.. ++.+|+|+|+|+.+++.|++++... ++..+
T Consensus 42 ~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (250)
T 1o9g_A 42 RALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGK 121 (250)
T ss_dssp HHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhccc
Confidence 3333444346679999999999999999854 4679999999999999999887654 33212
Q ss_pred ------------eE-------------EEEcCCCCCCC-----CCCCeeEEEecccccccCChh------hhhhcCCCCC
Q 042544 152 ------------CN-------------FVKADFMKMPF-----PDNSFDAVYAIEATCHAPDAA------EIEIGDGLPD 195 (305)
Q Consensus 152 ------------~~-------------~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~~~~~------~~~~~~~~~~ 195 (305)
++ ++++|+.+... ..++||+|++...+.+..+.. ..
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~-------- 193 (250)
T 1o9g_A 122 PSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV-------- 193 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH--------
T ss_pred ccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHH--------
Confidence 56 99999987321 345899999987665554321 10
Q ss_pred cccHHHHHHHHHhCCceEEEecc
Q 042544 196 IRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 196 ~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
..+++++.++|+|||.+++....
T Consensus 194 ~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 194 AGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESS
T ss_pred HHHHHHHHHhcCCCcEEEEeCcc
Confidence 12689999999999999985443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-15 Score=122.78 Aligned_cols=109 Identities=23% Similarity=0.267 Sum_probs=89.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC-C
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN-S 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~ 168 (305)
..+...+.+.++.+|||||||+|.++..+++..+.+|+++|+++.+++.|++++...+.. +++++++|+. .+++++ .
T Consensus 81 ~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~-~~~~~~~~ 158 (235)
T 1jg1_A 81 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGS-KGFPPKAP 158 (235)
T ss_dssp HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGG-GCCGGGCC
T ss_pred HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcc-cCCCCCCC
Confidence 344556677888999999999999999999653389999999999999999999887765 5999999983 344443 5
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
||+|++..++++++ +++.+.|+|||.+++...
T Consensus 159 fD~Ii~~~~~~~~~-----------------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 159 YDVIIVTAGAPKIP-----------------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp EEEEEECSBBSSCC-----------------HHHHHTEEEEEEEEEEEC
T ss_pred ccEEEECCcHHHHH-----------------HHHHHhcCCCcEEEEEEe
Confidence 99999998887654 347789999999999764
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=122.15 Aligned_cols=97 Identities=25% Similarity=0.407 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|+++. .++.++++|+..+++++++||+|++..+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 46789999999999999999965 4789999999999999998763 3589999999998888899999998654
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
.. .++++.++|+|||.+++.+...
T Consensus 158 ~~------------------~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 158 PC------------------KAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp CC------------------CHHHHHHHEEEEEEEEEEEECT
T ss_pred hh------------------hHHHHHHhcCCCcEEEEEEcCH
Confidence 21 5899999999999999987543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.4e-15 Score=122.13 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=86.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhc------CCeEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEEcCCCCCC---
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFS------STSVTGLNNNEYQITRGKELNRFAGV----DKTCNFVKADFMKMP--- 163 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~--- 163 (305)
.+.++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++...+. ..+++++++|+....
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 46788999999999999999999653 36999999999999999999887763 347999999998754
Q ss_pred -CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 164 -FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 164 -~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.++++||+|++...+++ .++++.+.|+|||.+++...
T Consensus 157 ~~~~~~fD~I~~~~~~~~-----------------~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASE-----------------LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHCCEEEEEECSBBSS-----------------CCHHHHHHEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHH-----------------HHHHHHHhcCCCcEEEEEEc
Confidence 45678999999887764 35668899999999998753
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=121.83 Aligned_cols=106 Identities=21% Similarity=0.192 Sum_probs=83.5
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC---CCCCCCCe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK---MPFPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~f 169 (305)
.+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.+.+++... .+++++++|+.+ +++.+++|
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCE
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcE
Confidence 345678899999999999999999965 4589999999999888887776654 479999999987 34456789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++... .++.... ++.++.++|+|||.+++..
T Consensus 149 D~V~~~~~---~~~~~~~----------~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 149 DVIFADVA---QPDQTRI----------VALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp EEEEECCC---CTTHHHH----------HHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEcCC---CccHHHH----------HHHHHHHHcCCCeEEEEEE
Confidence 99998543 2222111 4788999999999999954
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-15 Score=130.93 Aligned_cols=164 Identities=19% Similarity=0.147 Sum_probs=112.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
+.++.+|||||||+|.++..+++ .++.+++++|+ +.+++.+++ . .+++++.+|+.+ +++ .||+|++..
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~--~~D~v~~~~ 259 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK-SIP--SADAVLLKW 259 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT-CCC--CCSEEEEES
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC-CCC--CceEEEEcc
Confidence 34668999999999999999995 46789999999 788876543 1 359999999987 665 499999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHh---CCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHH
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQ---AGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRN 253 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 253 (305)
++||++++.... ++++++++|+| ||.+++.+.........| ............
T Consensus 260 vlh~~~d~~~~~---------~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~---------------~~~~~~~~~d~~ 315 (358)
T 1zg3_A 260 VLHDWNDEQSLK---------ILKNSKEAISHKGKDGKVIIIDISIDETSDDR---------------GLTELQLDYDLV 315 (358)
T ss_dssp CGGGSCHHHHHH---------HHHHHHHHTGGGGGGCEEEEEECEECTTCSCH---------------HHHHHHHHHHHH
T ss_pred cccCCCHHHHHH---------HHHHHHHhCCCCCCCcEEEEEEeccCCCCccc---------------hhhhHHHhhCHH
Confidence 999999886433 69999999999 999999875443211000 000011111111
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 254 MVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
+. ...+-...+.+++..+++++||..+.... ......++.++|
T Consensus 316 ~~---~~~~g~~~t~~e~~~ll~~aGf~~~~~~~--~~~~~~vie~~~ 358 (358)
T 1zg3_A 316 ML---TMFLGKERTKQEWEKLIYDAGFSSYKITP--ISGFKSLIEVYP 358 (358)
T ss_dssp HH---HHHSCCCEEHHHHHHHHHHTTCCEEEEEE--ETTTEEEEEEEC
T ss_pred Hh---ccCCCCCCCHHHHHHHHHHcCCCeeEEEe--cCCCcEEEEEeC
Confidence 11 11223345678999999999998877432 223335666654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.3e-15 Score=129.88 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||||||||.++...++....+|+|||.|+ |++.|++.++..++.++++++++|++++.++ ++||+|++-..-
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~ 159 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMG 159 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCB
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccc
Confidence 36889999999999999888776446899999996 8899999999999988999999999998876 679999985543
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
..+....... .++....++|+|||.++-
T Consensus 160 ~~l~~e~~l~--------~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 160 YGLLHESMLS--------SVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTBTTTCSHH--------HHHHHHHHHEEEEEEEES
T ss_pred ccccccchhh--------hHHHHHHhhCCCCceECC
Confidence 3333221110 146667799999998764
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.9e-15 Score=116.53 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||+|||+|.++..+++. + +|+|+|+|+.|++. ..+++++++|+.+ ++++++||+|+++..+
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~ 88 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQESVDVVVFNPPY 88 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCGGGCSEEEECCCC
T ss_pred CCCCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc----------ccCCeEEECChhh-hcccCCCCEEEECCCC
Confidence 45679999999999999999976 4 99999999999986 2468999999987 6667899999998888
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++.++... ...+......+.++.+.| |||.+++..
T Consensus 89 ~~~~~~~~--~~~~~~~~~~~~~~~~~l-pgG~l~~~~ 123 (170)
T 3q87_B 89 VPDTDDPI--IGGGYLGREVIDRFVDAV-TVGMLYLLV 123 (170)
T ss_dssp BTTCCCTT--TBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred ccCCcccc--ccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence 77655411 001111123688888888 999998875
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-15 Score=125.55 Aligned_cols=107 Identities=13% Similarity=0.211 Sum_probs=87.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCC--CCCeeE
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFP--DNSFDA 171 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~fD~ 171 (305)
+...++.+|||+|||+|..+..+++. ++.+|+++|+|+.+++.|++++...+...++.++++|+... +.. +++||+
T Consensus 50 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (233)
T 2gpy_A 50 LKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDV 129 (233)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEE
T ss_pred HhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccE
Confidence 33456789999999999999999964 46899999999999999999999888777899999999873 322 578999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|++..... +... +++++.++|+|||.+++.+
T Consensus 130 I~~~~~~~---~~~~-----------~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 130 LFIDAAKG---QYRR-----------FFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEGGGS---CHHH-----------HHHHHGGGEEEEEEEEEET
T ss_pred EEECCCHH---HHHH-----------HHHHHHHHcCCCeEEEEEc
Confidence 99876543 2222 5899999999999999864
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-15 Score=124.33 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=84.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-CC---CCCee
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-FP---DNSFD 170 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~---~~~fD 170 (305)
..++.+|||||||+|..+..+++. + +++|+++|+++.+++.|++++...++.++++++++|+.+. + ++ .++||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 346789999999999999999964 3 6899999999999999999999888877899999999652 1 11 25799
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++.....+. . .+++++.++|+|||.+++.+
T Consensus 136 ~v~~d~~~~~~---~-----------~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 136 FIFIDADKQNN---P-----------AYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp EEEECSCGGGH---H-----------HHHHHHHHTCCTTCEEEEES
T ss_pred EEEEcCCcHHH---H-----------HHHHHHHHhcCCCcEEEEeC
Confidence 99976542211 1 15899999999999888764
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=127.56 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=86.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcC----------CCCCeEEEEc
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAG----------VDKTCNFVKA 157 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~----------~~~~~~~~~~ 157 (305)
..+...+.+.++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|++++...+ ...+++++++
T Consensus 95 ~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 95 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 34445667889999999999999999999964 33899999999999999999987532 2357999999
Q ss_pred CCCCC--CCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 158 DFMKM--PFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 158 d~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|+.+. ++++++||+|++. .+++.. .+.++.++|+|||.+++...
T Consensus 175 d~~~~~~~~~~~~fD~V~~~-----~~~~~~-----------~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALD-----MLNPHV-----------TLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp CTTCCC-------EEEEEEC-----SSSTTT-----------THHHHGGGEEEEEEEEEEES
T ss_pred ChHHcccccCCCCeeEEEEC-----CCCHHH-----------HHHHHHHhcCCCcEEEEEeC
Confidence 99885 4667789999973 233322 58999999999999998764
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-15 Score=125.11 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-CC----CCCee
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-FP----DNSFD 170 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~----~~~fD 170 (305)
.++.+|||||||+|..+..+++. + +.+|+++|+|+.+++.|++++...++.++++++++|+.+. + +. .++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 46779999999999999999964 3 6899999999999999999999888877899999998652 2 11 17899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++.... .+... +++++.++|+|||.+++.+
T Consensus 143 ~v~~~~~~---~~~~~-----------~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 143 LIYIDADK---ANTDL-----------YYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEEECSCG---GGHHH-----------HHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCCH---HHHHH-----------HHHHHHHhcCCCcEEEEeC
Confidence 99965431 11111 5899999999999999865
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=122.05 Aligned_cols=112 Identities=16% Similarity=0.258 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhc--------CCCCCeEEEEcCCCC-CC--CCC
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFA--------GVDKTCNFVKADFMK-MP--FPD 166 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--------~~~~~~~~~~~d~~~-~~--~~~ 166 (305)
.++.+|||||||+|.++..++.. +...|+|+|+|+.+++.+++++... ++ .++.++++|+.+ ++ +++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhccc
Confidence 46789999999999999999964 4679999999999999999987765 55 479999999987 55 667
Q ss_pred CCeeEEEecccccccCChhhh--hhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEI--EIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++|.|+... +++... .....+....++.++.++|+|||.+++.+
T Consensus 127 ~~~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 8999998542 333100 00000001236999999999999999864
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-15 Score=119.92 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=78.8
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC---CCCCeeE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF---PDNSFDA 171 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~ 171 (305)
.+++.+|.+|||||||+ +++|+|+.|++.|+++.. .+++++++|+.++++ ++++||+
T Consensus 7 ~~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFDI 66 (176)
T ss_dssp TTTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred ccCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEeE
Confidence 35678999999999996 239999999999998753 248999999998876 7899999
Q ss_pred EEeccccccc-CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 172 VYAIEATCHA-PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 172 v~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|++..+++|+ ++... ++++++++|||||.+++.+.
T Consensus 67 V~~~~~l~~~~~~~~~-----------~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 67 ILSGLVPGSTTLHSAE-----------ILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp EEECCSTTCCCCCCHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred EEECChhhhcccCHHH-----------HHHHHHHHCCCCEEEEEEcc
Confidence 9999999999 77655 69999999999999999653
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=122.50 Aligned_cols=116 Identities=13% Similarity=0.085 Sum_probs=87.0
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcC-CHHHHHHHHHHH-----HhcCCC----CCeEEEEcC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNN-NEYQITRGKELN-----RFAGVD----KTCNFVKAD 158 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~-s~~~l~~a~~~~-----~~~~~~----~~~~~~~~d 158 (305)
.+++.......++.+|||+|||+|.++..++.....+|+|+|+ |+.+++.|++++ ...++. .+++++..|
T Consensus 68 ~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~ 147 (281)
T 3bzb_A 68 ADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYR 147 (281)
T ss_dssp HHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECC
T ss_pred HHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEec
Confidence 3444444444577899999999999999988763349999999 899999999998 444443 468888766
Q ss_pred CCCCC--C----CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHH---h--CCceEEE
Q 042544 159 FMKMP--F----PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALK---Q--AGFEVIW 215 (305)
Q Consensus 159 ~~~~~--~----~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~---~--gG~~~i~ 215 (305)
..+.. + ++++||+|++..+++|.++... +++.+.++|+ | ||.+++.
T Consensus 148 ~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~-----------ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 148 WGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDA-----------LLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp TTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHH-----------HHHHHHHHBCCTTTCTTCEEEEE
T ss_pred CCCccHHHHhhccCCCCCEEEEeCcccChHHHHH-----------HHHHHHHHhcccCCCCCCEEEEE
Confidence 55421 1 3578999999999998777655 5999999999 9 9987764
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.2e-16 Score=129.63 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=86.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCC-----CCCee
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFP-----DNSFD 170 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~-----~~~fD 170 (305)
.++.+|||||||+|..+..+++. ++++|+++|+++.+++.|++++...++.++++++++|+.+. +.. +++||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 45679999999999999999964 26899999999999999999999988877899999999763 211 47899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+|++..... +.. .+++++.++|+|||.+++.+..
T Consensus 139 ~V~~d~~~~---~~~-----------~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 139 FIFIDADKT---NYL-----------NYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEEEESCGG---GHH-----------HHHHHHHHHEEEEEEEEEECSS
T ss_pred EEEEcCChH---HhH-----------HHHHHHHHhcCCCeEEEEECCc
Confidence 999764311 111 1589999999999999986543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=125.91 Aligned_cols=123 Identities=19% Similarity=0.135 Sum_probs=95.9
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
...+...+...++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++...++. +++++++|+.+++.+.
T Consensus 192 a~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGTC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcccc
Confidence 345556677888899999999999999999964 4589999999999999999999998887 8999999999987777
Q ss_pred CCeeEEEecccccccCC--hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 167 NSFDAVYAIEATCHAPD--AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+.||+|++.-....... .....+ -..+++++.++|+|||.+++.+.
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~-----~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHL-----YWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHH-----HHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHH-----HHHHHHHHHHhcCCCcEEEEEeC
Confidence 78999999655432211 110000 01158889999999999999763
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-15 Score=118.76 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=82.5
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-C--CCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-F--PDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~--~~~~fD~v~~~ 175 (305)
++.+|||+|||+|.++..+++. +..|+|+|+|+.+++.|++++...+. +++++++|+.+. + . ..++||+|++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 6789999999999999999976 56699999999999999999888776 689999998762 2 1 12479999998
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHH--HHHHhCCceEEEecc
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCL--EALKQAGFEVIWEKD 218 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~~~i~~~~ 218 (305)
..++ ..... .++.+. ++|+|||.+++....
T Consensus 118 ~~~~--~~~~~-----------~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 118 PPYA--MDLAA-----------LFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CCTT--SCTTH-----------HHHHHHHHTCEEEEEEEEEEEET
T ss_pred CCCc--hhHHH-----------HHHHHHhhcccCCCcEEEEEeCC
Confidence 7765 33222 366666 899999999987643
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=124.83 Aligned_cols=125 Identities=19% Similarity=0.187 Sum_probs=90.8
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
...+.+.++.+|||+|||+|..+..+++. ..++|+|+|+|+.+++.+++++...++. +++++++|+..++..+++||
T Consensus 111 ~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD 189 (315)
T 1ixk_A 111 PVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFD 189 (315)
T ss_dssp HHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEE
T ss_pred HHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCC
Confidence 34567888999999999999999999964 2479999999999999999999988875 69999999988654457899
Q ss_pred EEEec------ccccccCChhhh----hhcC-CCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 171 AVYAI------EATCHAPDAAEI----EIGD-GLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 171 ~v~~~------~~l~~~~~~~~~----~~~~-~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+|++. .++.+.++.... .+.. ......+++++.++|||||.+++.+..
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 99973 234433321100 0000 000012689999999999999997753
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=121.77 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=86.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe---eEEEec
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF---DAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f---D~v~~~ 175 (305)
.++.+|||+|||+|..+..++..++.+|+|+|+|+.+++.|++++...++..+++++++|+.+ +++ ++| |+|+++
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~Ivsn 199 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSN 199 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEEC
T ss_pred cCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEc
Confidence 356799999999999999999557789999999999999999999988887679999999987 232 578 999996
Q ss_pred cccc-----------ccCChhhhhhcCCCCCcccHHHHH-HHHHhCCceEEEe
Q 042544 176 EATC-----------HAPDAAEIEIGDGLPDIRSTRKCL-EALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~-----------~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~gG~~~i~~ 216 (305)
-... |.|... +..+...+.+++++. +.|+|||.+++..
T Consensus 200 PPyi~~~~~l~~~v~~ep~~a---l~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEA---LFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHH---HBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CCCCCcccccChhhccCcHHH---hcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 2211 222221 111222234789999 9999999999853
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=121.08 Aligned_cols=102 Identities=21% Similarity=0.271 Sum_probs=84.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcC-------CeEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEEcCCCCCCCC
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSS-------TSVTGLNNNEYQITRGKELNRFAGV----DKTCNFVKADFMKMPFP 165 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-------~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~ 165 (305)
.+.++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++...+. ..+++++++|+.. +++
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~ 159 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYP 159 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCG
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCC
Confidence 467889999999999999999986423 5999999999999999998876541 2479999999987 444
Q ss_pred C-CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 D-NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~-~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+ ++||+|++..+++++ .+++.+.|+|||.+++..
T Consensus 160 ~~~~fD~I~~~~~~~~~-----------------~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 160 PNAPYNAIHVGAAAPDT-----------------PTELINQLASGGRLIVPV 194 (227)
T ss_dssp GGCSEEEEEECSCBSSC-----------------CHHHHHTEEEEEEEEEEE
T ss_pred cCCCccEEEECCchHHH-----------------HHHHHHHhcCCCEEEEEE
Confidence 4 789999998887764 356789999999999976
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-15 Score=122.25 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCCCCCeeEEEecc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFPDNSFDAVYAIE 176 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~ 176 (305)
++.+|||||||+|..+..+++. + +.+|+++|+|+.+++.|++++...++.++++++++|+.+. +..++ ||+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 5679999999999999999964 3 6899999999999999999998877766799999999763 44456 99999863
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
. ..+... +++++.++|+|||.+++.+
T Consensus 135 ~---~~~~~~-----------~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 D---VFNGAD-----------VLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T---TSCHHH-----------HHHHHGGGEEEEEEEEEES
T ss_pred C---hhhhHH-----------HHHHHHHhcCCCeEEEEEC
Confidence 2 122222 5899999999999998865
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.1e-15 Score=120.64 Aligned_cols=122 Identities=12% Similarity=0.013 Sum_probs=89.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
++++.+|||||||+|.++..++.. +..+|+|+|+++.+++.|+++++..++.+++++.++|+.+...+++.||+|+..+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 457889999999999999999965 3568999999999999999999999998889999999988554444799988655
Q ss_pred ccc----ccCChhhhhhcCC----CCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 177 ATC----HAPDAAEIEIGDG----LPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 177 ~l~----~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
+.. .+-+.....+..+ +....-...++++|...|+.++.+..+
T Consensus 99 mGg~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~~Gf~i~~E~lv 149 (230)
T 3lec_A 99 MGGRLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAANDFEIVAEDIL 149 (230)
T ss_dssp ECHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEEEE
T ss_pred CchHHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHHCCCEEEEEEEE
Confidence 422 1111110001110 111124788899999999988876533
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.6e-15 Score=124.11 Aligned_cols=104 Identities=14% Similarity=0.218 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-C-----CCCCe
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-F-----PDNSF 169 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~f 169 (305)
.++.+|||||||+|..+..+++. + +++|+++|+|+.+++.|++++...++.++++++++|+.+. + + ++++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 45679999999999999999964 3 6899999999999999999999888877899999998753 3 2 15789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++.... .+... +++++.++|+|||.+++..
T Consensus 158 D~V~~d~~~---~~~~~-----------~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDADK---DNYLN-----------YHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSCS---TTHHH-----------HHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCch---HHHHH-----------HHHHHHHhCCCCeEEEEec
Confidence 999986431 12211 6899999999999998865
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-15 Score=124.49 Aligned_cols=111 Identities=16% Similarity=0.133 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCC-HHHHHHH---HHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNN-EYQITRG---KELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s-~~~l~~a---~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v 172 (305)
.++.+|||||||+|.++..+++ .++.+|+|+|+| +.|++.| ++++...++. ++.++++|+..+|.. .+.+|.|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEEE
Confidence 5778999999999999999984 467899999999 7777776 7766666654 799999999987531 1345555
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++.....+. .... ......++++++++|||||.+++..
T Consensus 102 ~~~~~~~~~--~~~~----~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 102 SILFPWGTL--LEYV----IKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EEESCCHHH--HHHH----HTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEeCCCcHH--hhhh----hcchHHHHHHHHHhcCCCcEEEEEE
Confidence 443322111 0000 0001126899999999999998843
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-15 Score=122.62 Aligned_cols=106 Identities=12% Similarity=0.140 Sum_probs=85.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC----------
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP---------- 163 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~---------- 163 (305)
...++.+|||||||+|..+..+++. + +.+|+++|+++.+++.|++++...+...++.++++|+.+ ++
T Consensus 57 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 3446789999999999999999965 3 689999999999999999999888876679999999865 22
Q ss_pred ----CCC--CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 164 ----FPD--NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 164 ----~~~--~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++ ++||+|++.....+.+ . +++++.++|+|||.+++.+
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~~~~~~---~-----------~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDADKENYP---N-----------YYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSCGGGHH---H-----------HHHHHHHHEEEEEEEEEEC
T ss_pred ccccccCCCCCcCEEEEeCCHHHHH---H-----------HHHHHHHHcCCCeEEEEEc
Confidence 233 7899999875433222 1 5899999999999999865
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=128.10 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=91.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
..+...+...++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++...+.. ++++.+|+...+ +++
T Consensus 186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~--~~~ 261 (343)
T 2pjd_A 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV--KGR 261 (343)
T ss_dssp HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC--CSC
T ss_pred HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc--cCC
Confidence 34455565556779999999999999999964 4579999999999999999999877654 678899987643 678
Q ss_pred eeEEEecccccccCC---hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 169 FDAVYAIEATCHAPD---AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 169 fD~v~~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
||+|++...+++... ... ..+++++.++|+|||.+++...
T Consensus 262 fD~Iv~~~~~~~g~~~~~~~~---------~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 262 FDMIISNPPFHDGMQTSLDAA---------QTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp EEEEEECCCCCSSSHHHHHHH---------HHHHHHHGGGEEEEEEEEEEEE
T ss_pred eeEEEECCCcccCccCCHHHH---------HHHHHHHHHhCCCCcEEEEEEc
Confidence 999999988876321 111 1269999999999999999763
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-14 Score=122.23 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+.. +++.++|+.+. +++++||+|++...
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~~~~~fD~Vv~n~~ 193 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LPFGPFDLLVANLY 193 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GGGCCEEEEEEECC
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-CcCCCCCEEEECCc
Confidence 457889999999999999998875 569999999999999999999887764 89999998762 44678999998755
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+++. ..+.++.++|+|||.+++..
T Consensus 194 ~~~~~--------------~~l~~~~~~LkpgG~lils~ 218 (254)
T 2nxc_A 194 AELHA--------------ALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp HHHHH--------------HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHH--------------HHHHHHHHHcCCCCEEEEEe
Confidence 44321 15899999999999999865
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-14 Score=116.55 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=81.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCee
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSFD 170 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD 170 (305)
+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++... .+++++++|+.... ..+++||
T Consensus 69 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D 145 (227)
T 1g8a_A 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCce
Confidence 34678899999999999999999965 3489999999999999998887643 57999999998721 1235899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|++... .++.... ++.++.++|+|||.+++.
T Consensus 146 ~v~~~~~---~~~~~~~----------~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 146 VIFEDVA---QPTQAKI----------LIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEECCC---STTHHHH----------HHHHHHHHEEEEEEEEEE
T ss_pred EEEECCC---CHhHHHH----------HHHHHHHhcCCCCEEEEE
Confidence 9997543 2222111 489999999999999886
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=120.80 Aligned_cols=120 Identities=8% Similarity=0.043 Sum_probs=87.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
++++.+|||||||+|.++..++.. +..+|+|+|+++.+++.|+++++..++.+++++.++|+.+...++++||+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 467889999999999999999965 3568999999999999999999999998889999999987544434699988654
Q ss_pred c----ccccCChhhhhhcCC----CCCcccHHHHHHHHHhCCceEEEec
Q 042544 177 A----TCHAPDAAEIEIGDG----LPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 177 ~----l~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+ +..+-+.....+..+ +....-...++++|...|+-++.+.
T Consensus 99 mGg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 99 MGGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp ECHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHHTEEEEEEE
T ss_pred CchHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHHCCCEEEEEE
Confidence 3 222111111111111 1111247888999999998876654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=118.37 Aligned_cols=105 Identities=18% Similarity=0.115 Sum_probs=87.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
..+.++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++++..++. ++.++++|+.+.+. .++||+|++
T Consensus 115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~-~~~~D~Vi~ 192 (272)
T 3a27_A 115 FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVEL-KDVADRVIM 192 (272)
T ss_dssp TSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCC-TTCEEEEEE
T ss_pred HhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCc-cCCceEEEE
Confidence 34678899999999999999999965 4569999999999999999999988775 68899999988743 578999998
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.... +... .+.++.+.|+|||.+++...
T Consensus 193 d~p~----~~~~-----------~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 193 GYVH----KTHK-----------FLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp CCCS----SGGG-----------GHHHHHHHEEEEEEEEEEEE
T ss_pred CCcc----cHHH-----------HHHHHHHHcCCCCEEEEEEc
Confidence 6543 2222 68999999999999998763
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-14 Score=112.94 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=81.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------CCC
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------FPD 166 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~ 166 (305)
.+.++.+|||+|||+|.++..+++. ++.+++|+|+|+ +++. .+++++++|+.+.+ +++
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCC
Confidence 3677889999999999999999965 358999999999 7532 46899999998876 677
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|++..++++.................+++++.++|+|||.+++..
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 89999999888887765411000000000116899999999999999876
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-15 Score=125.84 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=69.0
Q ss_pred HHHHHHcCC-CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC-
Q 042544 90 HFLALQLGL-KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD- 166 (305)
Q Consensus 90 ~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~- 166 (305)
+.+...+.. .++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++...+. +++++++|+.+ ++++
T Consensus 19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~-~~~~~ 95 (215)
T 4dzr_A 19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIE-WLIER 95 (215)
T ss_dssp HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH-HHHHH
T ss_pred HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHh-hhhhh
Confidence 444444443 67889999999999999999964 467999999999999999998877655 68899999887 5554
Q ss_pred ----CCeeEEEecccccccC------Chhh-----hhhcCCCCC----cccHHHHHHHHHhCCceEEEe
Q 042544 167 ----NSFDAVYAIEATCHAP------DAAE-----IEIGDGLPD----IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ----~~fD~v~~~~~l~~~~------~~~~-----~~~~~~~~~----~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|++...+.+.. .... ..+..+... ..+++++.++|+|||.+++.+
T Consensus 96 ~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 96 AERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp HHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred hhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8999999965443222 1110 000000000 125777889999999944433
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-14 Score=121.19 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=71.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+...+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++....+..++++++++|+.+++++ +|
T Consensus 18 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~f 94 (285)
T 1zq9_A 18 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FF 94 (285)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CC
T ss_pred HHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hh
Confidence 44555677788899999999999999999976 6799999999999999999887655545799999999987765 69
Q ss_pred eEEEecc
Q 042544 170 DAVYAIE 176 (305)
Q Consensus 170 D~v~~~~ 176 (305)
|+|+++.
T Consensus 95 D~vv~nl 101 (285)
T 1zq9_A 95 DTCVANL 101 (285)
T ss_dssp SEEEEEC
T ss_pred cEEEEec
Confidence 9999853
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-14 Score=120.25 Aligned_cols=124 Identities=18% Similarity=0.148 Sum_probs=88.9
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh-cC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC----CCCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF-SS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF----PDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~ 168 (305)
.+.+.++.+|||+|||+|..+..+++. .+ .+|+|+|+|+.+++.+++++...+.. +++++++|+..++. .+++
T Consensus 78 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~ 156 (274)
T 3ajd_A 78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIF 156 (274)
T ss_dssp HHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCC
T ss_pred HhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhcccc
Confidence 567788999999999999999999963 34 79999999999999999999988875 79999999987543 2578
Q ss_pred eeEEEecc------cccccCChhhhhhcCC-CCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 169 FDAVYAIE------ATCHAPDAAEIEIGDG-LPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 169 fD~v~~~~------~l~~~~~~~~~~~~~~-~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
||+|++.- ++...+......+... -....+++++.++|||||.+++.+..+
T Consensus 157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 99999752 2221110000000000 000126889999999999999987543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-14 Score=118.14 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=84.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC-CeeEEEec
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN-SFDAVYAI 175 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~fD~v~~~ 175 (305)
++++.+|||||||+|..+..++.. +..+|+|+|+++.+++.|++++...++.+++++.++|..+ +++.+ .||+|+..
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~l~~~~~~D~Ivia 91 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-AFEETDQVSVITIA 91 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGGGCCCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-hcccCcCCCEEEEc
Confidence 457889999999999999999964 4579999999999999999999999998889999999965 22333 69998865
Q ss_pred ccc----cccCChhhhhhcCC----CCCcccHHHHHHHHHhCCceEEEec
Q 042544 176 EAT----CHAPDAAEIEIGDG----LPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l----~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++- ..+-+.....+..+ +....-...+++.|...|+.++.+.
T Consensus 92 G~Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 92 GMGGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp EECHHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEE
T ss_pred CCChHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEE
Confidence 431 11111111001111 0111247778888888888777654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-14 Score=121.47 Aligned_cols=97 Identities=12% Similarity=0.208 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-----cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC---CCCC-CCee
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-----SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM---PFPD-NSFD 170 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~-~~fD 170 (305)
++.+|||||||+|..+..+++. ++++|+|+|+|+.|++.|+. ...+++++++|+.+. +..+ .+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~~~v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cCCceEEEECcchhHHHHHhhccCCCC
Confidence 4579999999999999999864 57899999999999987761 235799999999874 4333 4799
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHH-HHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE-ALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~gG~~~i~~ 216 (305)
+|++... |. +... .+.++.+ +|+|||++++.+
T Consensus 155 ~I~~d~~--~~-~~~~-----------~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 155 LIFIDNA--HA-NTFN-----------IMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EEEEESS--CS-SHHH-----------HHHHHHHHTCCTTCEEEECS
T ss_pred EEEECCc--hH-hHHH-----------HHHHHHHhhCCCCCEEEEEe
Confidence 9997654 32 2222 5888997 999999999864
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-14 Score=119.46 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC----CCCCC--CCee
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK----MPFPD--NSFD 170 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~--~~fD 170 (305)
.++.+|||||||+|..+..+++. + +++|+++|+|+.+++.|++++...+...+++++++|+.+ ++.++ ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 35679999999999999999964 3 579999999999999999999888877689999999754 22333 7899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++.... ++... +++++.++|+|||.+++.+
T Consensus 151 ~V~~d~~~---~~~~~-----------~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 151 LIFIDADK---RNYPR-----------YYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEEECSCG---GGHHH-----------HHHHHHHTEEEEEEEEEEC
T ss_pred EEEECCCH---HHHHH-----------HHHHHHHHcCCCeEEEEeC
Confidence 99976442 11111 5899999999999999865
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-14 Score=119.68 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-C-----CCCCe
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-F-----PDNSF 169 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~f 169 (305)
.++.+|||||||+|..+..+++. + +.+|+++|+++.+++.|++++...++.++++++++|+.+. + + ++++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 45679999999999999999964 3 6899999999999999999999888877899999998752 2 2 25789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++..... .. ..+++++.++|+|||.+++..
T Consensus 149 D~I~~d~~~~-----~~---------~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDADKP-----NY---------IKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSCGG-----GH---------HHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCchH-----HH---------HHHHHHHHHhcCCCeEEEEec
Confidence 9999753211 11 126899999999999988864
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-14 Score=124.72 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=83.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCC-CeEEEEcCCCCCCC----CCCCeeEE
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK-TCNFVKADFMKMPF----PDNSFDAV 172 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~----~~~~fD~v 172 (305)
..++.+|||+|||+|.++..++.. +++|+++|+|+.+++.|++++...++.. +++++++|+.++.. .+++||+|
T Consensus 151 ~~~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 151 ADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 346789999999999999999975 6699999999999999999998888765 59999999976421 14689999
Q ss_pred Eecccc-c---------ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEAT-C---------HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l-~---------~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++.-.. . +..+.. .++.++.++|+|||.+++..
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~-----------~ll~~~~~~LkpgG~lli~~ 272 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLP-----------LMLDICREILSPKALGLVLT 272 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHH-----------HHHHHHHHTBCTTCCEEEEE
T ss_pred EECCccccCCchHHHHHHHHHHH-----------HHHHHHHHhcCcCcEEEEEE
Confidence 984321 1 111111 25888899999999977765
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-14 Score=118.23 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=84.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-CCC----CCe
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-FPD----NSF 169 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~----~~f 169 (305)
..++.+|||||||+|..+..+++. + +.+|+++|+++.+++.|++++...+...+++++++|+.+. + +++ ++|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 356789999999999999999964 3 6899999999999999999998888877899999998652 1 111 689
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++.... .+.. .+++++.++|+|||.+++.+
T Consensus 147 D~v~~d~~~---~~~~-----------~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 147 DVAVVDADK---ENCS-----------AYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEEECSCS---TTHH-----------HHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEECCCH---HHHH-----------HHHHHHHHHcCCCeEEEEEC
Confidence 999985431 1111 15899999999999998865
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=123.18 Aligned_cols=127 Identities=16% Similarity=0.213 Sum_probs=94.9
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF-SS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDN 167 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~ 167 (305)
+...+.+.++.+|||+|||+|..+..+++. ++ ++|+++|+|+.+++.+++++...|+. ++.++++|+..++ ++++
T Consensus 251 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~ 329 (450)
T 2yxl_A 251 ASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIGEE 329 (450)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSCSS
T ss_pred HHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhccC
Confidence 344567888999999999999999999964 34 79999999999999999999988874 6999999998865 5557
Q ss_pred CeeEEEe------cccccccCChhhhhhcCCCC-----CcccHHHHHHHHHhCCceEEEeccC
Q 042544 168 SFDAVYA------IEATCHAPDAAEIEIGDGLP-----DIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 168 ~fD~v~~------~~~l~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
+||+|++ .+++.+.|+.....-...+. ...+++++.++|+|||.+++.+..+
T Consensus 330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 8999996 33455555432100000000 0125888999999999999987533
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=117.88 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=74.2
Q ss_pred HcCCC-CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEE-EEcCCCCCC---CCCCCe
Q 042544 95 QLGLK-SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNF-VKADFMKMP---FPDNSF 169 (305)
Q Consensus 95 ~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~-~~~d~~~~~---~~~~~f 169 (305)
.+.+. ++.+|||||||||.++..+++....+|+|+|+|+.|++.+.+. ..++.. ...|+..++ ++..+|
T Consensus 79 ~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 79 VFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred hcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh------CcccceecccCceecchhhCCCCCC
Confidence 34443 5779999999999999999876456999999999999875432 122322 223443332 344569
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++..+++++.. ++.++.++|+|||.+++..
T Consensus 153 D~v~~d~sf~sl~~--------------vL~e~~rvLkpGG~lv~lv 185 (291)
T 3hp7_A 153 SFASIDVSFISLNL--------------ILPALAKILVDGGQVVALV 185 (291)
T ss_dssp SEEEECCSSSCGGG--------------THHHHHHHSCTTCEEEEEE
T ss_pred CEEEEEeeHhhHHH--------------HHHHHHHHcCcCCEEEEEE
Confidence 99999877775522 5999999999999998863
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.5e-14 Score=120.87 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHh---cCCCCCeEEEEcCCCCCCC--CCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRF---AGVDKTCNFVKADFMKMPF--PDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~d~~~~~~--~~~~fD~v 172 (305)
+++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++.. ....++++++++|+..++. ++++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 56689999999999999999965 457999999999999999998632 1224579999999987543 46889999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++.....+.+.... ....+++++.++|+|||.+++..
T Consensus 174 i~d~~~~~~~~~~l-------~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 174 IIDTTDPAGPASKL-------FGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEECC----------------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCccccchhh-------hHHHHHHHHHHhcCCCcEEEEec
Confidence 99655444332211 01226999999999999999864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-13 Score=107.91 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=70.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
...++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++. +++++++|+.+++ ++||+|++..
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~---~~~D~v~~~~ 118 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMNP 118 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEECC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC---CCeeEEEECC
Confidence 455778999999999999999997634579999999999999998753 5899999998864 6899999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHH
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEAL 206 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L 206 (305)
.+++..+.... .+++++.+.+
T Consensus 119 p~~~~~~~~~~---------~~l~~~~~~~ 139 (200)
T 1ne2_A 119 PFGSVVKHSDR---------AFIDKAFETS 139 (200)
T ss_dssp CC-------CH---------HHHHHHHHHE
T ss_pred CchhccCchhH---------HHHHHHHHhc
Confidence 98888653221 1467777766
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-14 Score=120.21 Aligned_cols=111 Identities=21% Similarity=0.090 Sum_probs=76.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHH-hcCCCCCeEEE--EcCCCCCCCCCCCeeEE
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNR-FAGVDKTCNFV--KADFMKMPFPDNSFDAV 172 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~--~~d~~~~~~~~~~fD~v 172 (305)
..+.++.+|||+|||+|.++..+++. .+|+|+|+|+ |+..+++... ......++.++ ++|+..++ +++||+|
T Consensus 78 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V 152 (276)
T 2wa2_A 78 GGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTV 152 (276)
T ss_dssp TSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEE
T ss_pred CCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEE
Confidence 44567899999999999999999976 7999999998 6433222100 00011168899 99998865 6789999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCC--ceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAG--FEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG--~~~i~~ 216 (305)
+|..+ ++.+.+..... ..+.+++++.++|+||| .+++..
T Consensus 153 vsd~~-~~~~~~~~d~~----~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 153 LCDIG-ESNPTAAVEAS----RTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp EECCC-CCCSCHHHHHH----HHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EECCC-cCCCchhhhHH----HHHHHHHHHHHHhccCCCcEEEEEe
Confidence 99877 54443311000 00115888999999999 888855
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=118.76 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=82.9
Q ss_pred CeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeEEEecccc
Q 042544 102 QKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAVYAIEAT 178 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~~~l 178 (305)
.+|||||||+|..+..+++ +++.+|++||+++.+++.|++++... ..++++++++|+..+ .+++++||+|++....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~-~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP-RAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC-CTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc-CCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 4999999999999999996 67889999999999999999987532 235799999998764 3456889999985433
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
........ ....++++++++|+|||.+++...
T Consensus 170 ~~~~~~~L-------~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNF-------TTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGG-------SBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhh-------hHHHHHHHHHHhcCCCcEEEEEec
Confidence 22111111 012269999999999999988753
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-13 Score=109.68 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=76.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-c--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----------
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-S--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----------- 163 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----------- 163 (305)
+.++.+|||+|||+|.++..+++. + +.+|+|+|+|+.. . ..+++++++|+.+.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~-~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P-IPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C-CTTCEEEECCTTTTSSCCC-------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C-CCCceEEEccccchhhhhhccccccc
Confidence 567889999999999999999964 3 5899999999831 1 246899999998866
Q ss_pred --------------CCCCCeeEEEecccccccCC----hhhh-hhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 164 --------------FPDNSFDAVYAIEATCHAPD----AAEI-EIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 164 --------------~~~~~fD~v~~~~~l~~~~~----~~~~-~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++++||+|++..++++... .... .. ....++++.++|+|||.+++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~-----~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCEL-----TLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHH-----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHH-----HHHHHHHHHHHccCCCEEEEEE
Confidence 56678999999877665421 1110 00 0014788999999999998854
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.9e-14 Score=118.79 Aligned_cols=112 Identities=16% Similarity=0.075 Sum_probs=76.9
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHH-hcCCCCCeEEE--EcCCCCCCCCCCCeeE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNR-FAGVDKTCNFV--KADFMKMPFPDNSFDA 171 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~--~~d~~~~~~~~~~fD~ 171 (305)
...+.++.+|||||||+|.++..+++. .+|+|+|+++ |+..+++... ......++.++ ++|+..++ +++||+
T Consensus 69 ~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~ 143 (265)
T 2oxt_A 69 RGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDV 143 (265)
T ss_dssp HTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSE
T ss_pred cCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcE
Confidence 345678899999999999999999875 7999999998 5432211100 00001168899 99998865 678999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCC--ceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAG--FEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG--~~~i~~ 216 (305)
|+|..+ ++.+++..... ..+.++..+.++|+||| .+++..
T Consensus 144 V~sd~~-~~~~~~~~d~~----~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 144 IMCDVG-ESSPKWSVESE----RTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp EEECCC-CCCSCHHHHHH----HHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEEeCc-ccCCccchhHH----HHHHHHHHHHHHhccCCCeEEEEEe
Confidence 999877 55444321000 00115888999999999 888865
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-14 Score=125.85 Aligned_cols=96 Identities=19% Similarity=0.239 Sum_probs=76.9
Q ss_pred CCCeEEEEcCC------CChHHHHHHh-h-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC------
Q 042544 100 SGQKVLDVGCG------IGGPLREIAQ-F-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP------ 165 (305)
Q Consensus 100 ~~~~vLDiGcG------~G~~~~~l~~-~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~------ 165 (305)
++.+||||||| +|..+..+++ + ++++|+|+|+|+.|.. ...+++++++|+.++++.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GDa~dlpf~~~l~~~ 285 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGDQNDAEFLDRIARR 285 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEecccccchhhhhhcc
Confidence 56799999999 7777777774 3 6899999999999831 135799999999998776
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++||+|++.. .++..+... ++++++++|||||.+++.+.
T Consensus 286 d~sFDlVisdg-sH~~~d~~~-----------aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 286 YGPFDIVIDDG-SHINAHVRT-----------SFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp HCCEEEEEECS-CCCHHHHHH-----------HHHHHGGGEEEEEEEEEECG
T ss_pred cCCccEEEECC-cccchhHHH-----------HHHHHHHhcCCCeEEEEEec
Confidence 68999999864 355444433 69999999999999999864
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-13 Score=119.92 Aligned_cols=88 Identities=22% Similarity=0.191 Sum_probs=75.1
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
.+.... ..++.+|||+|||+|.++..++... .++|+|+|+|+.|++.|++++...++.++++++++|+.++++++++|
T Consensus 209 ~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~f 287 (373)
T 3tm4_A 209 AMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSV 287 (373)
T ss_dssp HHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCE
T ss_pred HHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCc
Confidence 344444 6788999999999999999999752 24999999999999999999999888778999999999988877899
Q ss_pred eEEEeccccc
Q 042544 170 DAVYAIEATC 179 (305)
Q Consensus 170 D~v~~~~~l~ 179 (305)
|+|++...+.
T Consensus 288 D~Ii~npPyg 297 (373)
T 3tm4_A 288 DFAISNLPYG 297 (373)
T ss_dssp EEEEEECCCC
T ss_pred CEEEECCCCC
Confidence 9999965543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-13 Score=118.73 Aligned_cols=112 Identities=23% Similarity=0.260 Sum_probs=83.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhc--CC-CCCeEEEEcCCCCC--CCCCCCee
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFA--GV-DKTCNFVKADFMKM--PFPDNSFD 170 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~-~~~~~~~~~d~~~~--~~~~~~fD 170 (305)
..+++.+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++... ++ .++++++++|+... ..++++||
T Consensus 117 ~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred hCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence 3456689999999999999999965 4579999999999999999987642 33 35799999998763 23467899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|++.......+.... ....+++++.++|+|||.+++.
T Consensus 197 lIi~d~~~p~~~~~~l-------~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKEL-------FEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEECCCCTTSGGGGG-------GSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCCccCcchhh-------hHHHHHHHHHHhcCCCcEEEEe
Confidence 9998543211111110 0122699999999999999986
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.4e-13 Score=112.66 Aligned_cols=103 Identities=19% Similarity=0.163 Sum_probs=86.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.+|.+|||+|||+|.+++.++....++|+++|++|.+++.++++++.+++.++++++++|+.+++. .+.||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC
Confidence 4679999999999999999999775679999999999999999999999998899999999988754 578999986522
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.... ++..+.++|++||.+.+.+
T Consensus 202 ----~~~~~-----------~l~~a~~~lk~gG~ih~~~ 225 (278)
T 3k6r_A 202 ----VRTHE-----------FIPKALSIAKDGAIIHYHN 225 (278)
T ss_dssp ----SSGGG-----------GHHHHHHHEEEEEEEEEEE
T ss_pred ----CcHHH-----------HHHHHHHHcCCCCEEEEEe
Confidence 22222 6889999999999887654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-12 Score=104.81 Aligned_cols=96 Identities=16% Similarity=0.043 Sum_probs=76.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
...++.+|||+|||+|.++..++.....+|+|+|+|+.+++.+++++...+. +++++++|+.+++ ++||+|++..
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~ 120 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMNP 120 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEECC
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC---CCCCEEEEcC
Confidence 4557889999999999999999976345899999999999999999887765 6999999998864 4799999987
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHH
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEAL 206 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L 206 (305)
.+++....... .+++++.+++
T Consensus 121 p~~~~~~~~~~---------~~l~~~~~~l 141 (207)
T 1wy7_A 121 PFGSQRKHADR---------PFLLKAFEIS 141 (207)
T ss_dssp CCSSSSTTTTH---------HHHHHHHHHC
T ss_pred CCccccCCchH---------HHHHHHHHhc
Confidence 77665432221 2567777776
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-13 Score=122.06 Aligned_cols=123 Identities=18% Similarity=0.134 Sum_probs=91.3
Q ss_pred HHcCCC--CCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-CCCC
Q 042544 94 LQLGLK--SGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF-PDNS 168 (305)
Q Consensus 94 ~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~ 168 (305)
..+.+. ++.+|||+|||+|..+..+++.. .+.|+++|+|+.+++.+++++...|+. ++.++++|+..++. .+++
T Consensus 109 ~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~ 187 (479)
T 2frx_A 109 AALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEM 187 (479)
T ss_dssp HHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTC
T ss_pred HHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhcccc
Confidence 345666 89999999999999999999652 479999999999999999999988875 69999999987653 4578
Q ss_pred eeEEEec------ccccccCChhh------h-hhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 169 FDAVYAI------EATCHAPDAAE------I-EIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 169 fD~v~~~------~~l~~~~~~~~------~-~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
||+|++. .++.+.++... . .+. -....++.++.++|||||.+++.+..+
T Consensus 188 fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~--~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 188 FDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIA--ATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp EEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHH--HHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHH--HHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 9999972 23433333200 0 000 000125888999999999999987544
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-13 Score=109.36 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=87.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
+...++.+|||||||+|-++..+. +..+|+|+|+++.+++.+++++...+. +..+.+.|....+.+ ++||+|++.
T Consensus 101 ~~~~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~-~~~DvvLll 175 (253)
T 3frh_A 101 FSAETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPA-EAGDLALIF 175 (253)
T ss_dssp TSSCCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCC-CBCSEEEEE
T ss_pred hcCCCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCC-CCcchHHHH
Confidence 344567799999999999999887 688999999999999999999887764 589999999887655 589999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
-+++|+.+.... ...++.+.|+++|.++-.
T Consensus 176 k~lh~LE~q~~~----------~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 176 KLLPLLEREQAG----------SAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp SCHHHHHHHSTT----------HHHHHHHHCBCSEEEEEE
T ss_pred HHHHHhhhhchh----------hHHHHHHHhcCCCEEEEc
Confidence 999998776553 344888899998766654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-13 Score=117.58 Aligned_cols=112 Identities=24% Similarity=0.224 Sum_probs=82.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHh--cCC-CCCeEEEEcCCCC-CCCCCCCeeEE
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRF--AGV-DKTCNFVKADFMK-MPFPDNSFDAV 172 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~~-~~~~~~~~~d~~~-~~~~~~~fD~v 172 (305)
..++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++.. .++ .++++++++|+.+ ++..+++||+|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 345689999999999999999965 458999999999999999998764 233 4579999999876 33446789999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++.......+... +....+++++.++|+|||.+++..
T Consensus 173 i~d~~~~~~~~~~-------l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 173 ITDSSDPMGPAES-------LFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEECC------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCCCCcchh-------hhHHHHHHHHHhccCCCeEEEEec
Confidence 9854322211110 001236999999999999999865
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=123.76 Aligned_cols=125 Identities=15% Similarity=0.039 Sum_probs=91.3
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCe
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSF 169 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 169 (305)
...+.+.++.+|||+|||+|..+..+++. . .++|+++|+|+.+++.+++++...|+. +.++++|+..++ +.+++|
T Consensus 94 a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~F 171 (464)
T 3m6w_A 94 GVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYF 171 (464)
T ss_dssp HHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCE
T ss_pred HHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccC
Confidence 34567788999999999999999999954 2 379999999999999999999998875 899999987754 235789
Q ss_pred eEEEe------cccccccCChhhhhhcCCC-----CCcccHHHHHHHHHhCCceEEEeccC
Q 042544 170 DAVYA------IEATCHAPDAAEIEIGDGL-----PDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 170 D~v~~------~~~l~~~~~~~~~~~~~~~-----~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
|+|++ ..++...++.....-...+ ....+++++.++|||||.+++++..+
T Consensus 172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 99995 2234433432110000000 00125888899999999999987544
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-13 Score=114.92 Aligned_cols=110 Identities=23% Similarity=0.215 Sum_probs=83.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhc--CC-CCCeEEEEcCCCC-CCCCCCCeeEEEe
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFA--GV-DKTCNFVKADFMK-MPFPDNSFDAVYA 174 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~-~~~~~~~~~d~~~-~~~~~~~fD~v~~ 174 (305)
.+.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++... +. .++++++++|+.. ++..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 5679999999999999999976 4579999999999999999987542 23 4589999999876 3334578999998
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.......+.. .+....+++++.++|+|||.+++..
T Consensus 155 d~~~~~~~~~-------~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAV-------NLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCC-------CCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcch-------hhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 5433222211 1111236999999999999998863
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-13 Score=115.60 Aligned_cols=109 Identities=24% Similarity=0.287 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc--CC--------CCCeEEEEcCCCCC-CCCCC
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA--GV--------DKTCNFVKADFMKM-PFPDN 167 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~--------~~~~~~~~~d~~~~-~~~~~ 167 (305)
+++.+|||||||+|..+..+++.+..+|+++|+++.+++.|++++ .. ++ .++++++++|+.+. +. ++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 456799999999999999999665579999999999999999987 33 22 45799999998652 22 57
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|++.......+... +....+++++.++|+|||.+++..
T Consensus 152 ~fD~Ii~d~~~~~~~~~~-------l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 152 GFDVIIADSTDPVGPAKV-------LFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CEEEEEEECCCCC------------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEECCCCCCCcchh-------hhHHHHHHHHHHhcCCCcEEEEEc
Confidence 899999854422111111 001236999999999999998864
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-13 Score=116.92 Aligned_cols=111 Identities=26% Similarity=0.273 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhc--CC-CCCeEEEEcCCCCC-CCCCCCeeEEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFA--GV-DKTCNFVKADFMKM-PFPDNSFDAVY 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~-~~~~~~~~~d~~~~-~~~~~~fD~v~ 173 (305)
+++.+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++... +. .++++++++|+.+. +..+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 35679999999999999999965 4689999999999999999987642 22 35799999998762 22357899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+...-..-+.... ....+++++.++|+|||.+++..
T Consensus 195 ~d~~~p~~~~~~l-------~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETL-------FNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGG-------SSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhh-------hHHHHHHHHHHhcCCCcEEEEEc
Confidence 8542111111111 00226999999999999999864
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=9.9e-13 Score=119.61 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=93.8
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDN 167 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~ 167 (305)
.+...+.+.++.+|||+|||+|..+..+++. ++++|+|+|+|+.+++.+++++...+. ++.++++|+..++ ++++
T Consensus 237 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~~ 314 (429)
T 1sqg_A 237 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQ 314 (429)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTC
T ss_pred HHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcccC
Confidence 3444567788999999999999999999965 347999999999999999999988876 3789999998865 5567
Q ss_pred CeeEEEe------cccccccCChhhhhhcCCCC-----CcccHHHHHHHHHhCCceEEEeccC
Q 042544 168 SFDAVYA------IEATCHAPDAAEIEIGDGLP-----DIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 168 ~fD~v~~------~~~l~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
+||+|++ .+++.+.|+.....-...+. ...+++++.+.|+|||.+++.+..+
T Consensus 315 ~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 8999996 23455555431100000000 0125888999999999999987533
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-13 Score=117.31 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHh--cC-C-CCCeEEEEcCCCC-CCCCCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRF--AG-V-DKTCNFVKADFMK-MPFPDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~-~-~~~~~~~~~d~~~-~~~~~~~fD~v 172 (305)
+++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++.. .+ . .++++++++|+.+ ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 35679999999999999999965 467999999999999999998754 12 2 3579999999976 33346789999
Q ss_pred Eecccccc---cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCH---APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++....+. -+.... ....+++++.++|+|||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l-------~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLL-------YTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGG-------SSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhc-------cHHHHHHHHHHhcCCCcEEEEEc
Confidence 99755433 111100 01236999999999999999874
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=116.35 Aligned_cols=104 Identities=11% Similarity=0.030 Sum_probs=84.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCC-CCCCeeEEEe
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPF-PDNSFDAVYA 174 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~fD~v~~ 174 (305)
..++.+|||+| |+|.++..++.. +..+|+|+|+|+.|++.|++++...++. +++++++|+.+ +|. .+++||+|++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEE
Confidence 34678999999 999999999864 3479999999999999999999988876 79999999988 663 3568999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCce-EEE
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFE-VIW 215 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~-~i~ 215 (305)
...++... .. .+++++.++|+|||.+ ++.
T Consensus 248 ~~p~~~~~-~~-----------~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 248 DPPETLEA-IR-----------AFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp CCCSSHHH-HH-----------HHHHHHHHTBCSTTCEEEEE
T ss_pred CCCCchHH-HH-----------HHHHHHHHHcccCCeEEEEE
Confidence 76544321 11 2689999999999965 443
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-12 Score=115.40 Aligned_cols=92 Identities=22% Similarity=0.363 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 82 RESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
....+...+.+...+.+.++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...++. +++|+++|+.+
T Consensus 268 ~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~ 345 (433)
T 1uwv_A 268 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEE 345 (433)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTS
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHH
Confidence 3344455566666777778889999999999999999976 789999999999999999999888775 79999999987
Q ss_pred ----CCCCCCCeeEEEec
Q 042544 162 ----MPFPDNSFDAVYAI 175 (305)
Q Consensus 162 ----~~~~~~~fD~v~~~ 175 (305)
+++++++||+|++.
T Consensus 346 ~l~~~~~~~~~fD~Vv~d 363 (433)
T 1uwv_A 346 DVTKQPWAKNGFDKVLLD 363 (433)
T ss_dssp CCSSSGGGTTCCSEEEEC
T ss_pred HhhhhhhhcCCCCEEEEC
Confidence 23456789999974
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.7e-13 Score=114.34 Aligned_cols=112 Identities=23% Similarity=0.244 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHh--cCC-CCCeEEEEcCCCC-CCCCCCCeeEEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRF--AGV-DKTCNFVKADFMK-MPFPDNSFDAVY 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~~-~~~~~~~~~d~~~-~~~~~~~fD~v~ 173 (305)
+++.+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++.. .+. .++++++++|+.. ++..+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 34579999999999999999965 468999999999999999998754 222 3579999999865 333457899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+...-..+... ..+....+++++.++|+|||.+++..
T Consensus 169 ~d~~~~~~~~~------~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQG------GHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCch------hhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 74321101110 00111236999999999999999863
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-13 Score=117.40 Aligned_cols=111 Identities=23% Similarity=0.208 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhc--CC-CCCeEEEEcCCCC-CCCCCCCeeEEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFA--GV-DKTCNFVKADFMK-MPFPDNSFDAVY 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~-~~~~~~~~~d~~~-~~~~~~~fD~v~ 173 (305)
+++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++... ++ .++++++++|+.+ ++..+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 35579999999999999999965 4689999999999999999987543 22 4579999999876 333467899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+...-...+.... ....+++++.++|+|||.+++..
T Consensus 187 ~d~~~~~~~~~~l-------~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESL-------FGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhh-------hHHHHHHHHHhhcCCCeEEEEEC
Confidence 8543211111110 01236999999999999999864
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=104.51 Aligned_cols=104 Identities=13% Similarity=0.191 Sum_probs=72.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-----------C
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-----------D 166 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 166 (305)
+.++.+|||+|||+|.++..+++. +++|+|+|+++.. . ..+++++++|+.+.+.. .
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~-~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------E-IAGVRFIRCDIFKETIFDDIDRALREEGI 89 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------C-CTTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------c-CCCeEEEEccccCHHHHHHHHHHhhcccC
Confidence 467899999999999999999976 8899999999742 1 24799999999875421 1
Q ss_pred CCeeEEEecccccccCCh--hhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDA--AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|++.......... +...... .....++.+.++|+|||.+++..
T Consensus 90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~--l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 90 EKVDDVVSDAMAKVSGIPSRDHAVSYQ--IGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp SSEEEEEECCCCCCCSCHHHHHHHHHH--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcceEEecCCCcCCCCCcccCHHHHHH--HHHHHHHHHHHHccCCCEEEEEE
Confidence 489999986532211110 0000000 00125788899999999999865
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-13 Score=113.28 Aligned_cols=99 Identities=17% Similarity=0.075 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEE-cCCCCCCCCCCCeeEEEec
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV--DKTCNFVK-ADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~-~d~~~~~~~~~~fD~v~~~ 175 (305)
.++.+|||||||||.++..+++....+|+|+|+|+.|++.++++...... ..++.+.. .|+.. ..||.+.+.
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~~~D 110 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ-----GRPSFTSID 110 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS-----CCCSEEEEC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc-----CCCCEEEEE
Confidence 35679999999999999999976335999999999999987764321110 01222222 22221 123433333
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.++.++ .. ++.++.++|+|||.+++..
T Consensus 111 ~v~~~l---~~-----------~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 111 VSFISL---DL-----------ILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp CSSSCG---GG-----------THHHHHHHSCTTCEEEEEE
T ss_pred EEhhhH---HH-----------HHHHHHHhccCCCEEEEEE
Confidence 333333 11 6999999999999998853
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-13 Score=119.84 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=91.1
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCe
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSF 169 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 169 (305)
...+.+.++.+|||+|||+|..+..+++. . .++|+++|+|+.+++.+++++...|+. ++.++++|+..++ ..+++|
T Consensus 98 ~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~~F 176 (456)
T 3m4x_A 98 GTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSGFF 176 (456)
T ss_dssp HHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTTCE
T ss_pred HHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccccC
Confidence 34567888999999999999999999954 2 479999999999999999999999885 6999999987754 235789
Q ss_pred eEEEecc------cccccCChhhhhhcCCCC--------CcccHHHHHHHHHhCCceEEEeccC
Q 042544 170 DAVYAIE------ATCHAPDAAEIEIGDGLP--------DIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 170 D~v~~~~------~l~~~~~~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
|+|++.- ++..-|+.... .... ...++.++.++|||||.+++++..+
T Consensus 177 D~Il~DaPCSg~G~~rr~p~~~~~---~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMFRKDPNAIKE---WTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEEEEECCCCCGGGTTTCHHHHHH---CCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CEEEECCCCCCccccccCHHHhhh---cCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 9999732 23222221100 0000 0126888999999999999877644
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.1e-12 Score=110.67 Aligned_cols=84 Identities=21% Similarity=0.334 Sum_probs=67.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+...+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...+. ++++++++|+..+++ .+|
T Consensus 32 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~--~~~ 107 (299)
T 2h1r_A 32 DKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF--PKF 107 (299)
T ss_dssp HHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC--CCC
T ss_pred HHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc--ccC
Confidence 44555667788899999999999999999976 78999999999999999998876665 579999999988765 379
Q ss_pred eEEEeccc
Q 042544 170 DAVYAIEA 177 (305)
Q Consensus 170 D~v~~~~~ 177 (305)
|+|++...
T Consensus 108 D~Vv~n~p 115 (299)
T 2h1r_A 108 DVCTANIP 115 (299)
T ss_dssp SEEEEECC
T ss_pred CEEEEcCC
Confidence 99998543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-13 Score=113.35 Aligned_cols=112 Identities=25% Similarity=0.260 Sum_probs=83.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcC--C-CCCeEEEEcCCCCC-CCCCCCeeEE
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAG--V-DKTCNFVKADFMKM-PFPDNSFDAV 172 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~-~~~~~~~~~d~~~~-~~~~~~fD~v 172 (305)
.+++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++...+ . .++++++++|+.+. +..+++||+|
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 345689999999999999999965 45899999999999999999875432 1 35799999998763 2235789999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++.....+.+..... ...+++++.++|+|||.+++..
T Consensus 156 i~d~~~~~~~~~~l~-------~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 156 IVDSSDPIGPAETLF-------NQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEECCCTTTGGGGGS-------SHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhh-------HHHHHHHHHHhcCCCcEEEEEC
Confidence 985433222222110 0126999999999999999863
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=104.02 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=73.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhh-cC---------CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEE-EcCCCCCC--
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQF-SS---------TSVTGLNNNEYQITRGKELNRFAGVDKTCNFV-KADFMKMP-- 163 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~---------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~d~~~~~-- 163 (305)
.+.++.+|||+|||+|.++..+++. +. .+|+|+|+|+.+ .. .+++++ ++|+...+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~ 86 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTS 86 (196)
T ss_dssp CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHH
Confidence 3567899999999999999999965 32 799999999832 11 368888 88887642
Q ss_pred ------CCCCCeeEEEeccccccc----CChhhh-hhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 164 ------FPDNSFDAVYAIEATCHA----PDAAEI-EIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 164 ------~~~~~fD~v~~~~~l~~~----~~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++++||+|++..+++.. .+.... .. ...+++++.++|+|||.+++..
T Consensus 87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISL-----CLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHH-----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHH-----HHHHHHHHHHHhcCCCEEEEEe
Confidence 345689999996644332 222100 00 0025889999999999999875
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.3e-13 Score=119.11 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCC-CeEEEEcCCCCC-C-C--CCCCeeEEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK-TCNFVKADFMKM-P-F--PDNSFDAVY 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~-~-~--~~~~fD~v~ 173 (305)
.++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++++..++.. +++++++|+.+. + . ...+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 5778999999999999999997533599999999999999999999888865 899999998762 2 1 235899999
Q ss_pred ecccc-----cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEAT-----CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l-----~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.-.. .+..+....- ..++..+.++|+|||.+++..
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~-------~~ll~~~~~~L~pgG~l~~~~ 331 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDY-------HKLIRQGLEILSENGLIIAST 331 (385)
T ss_dssp ECCCCC-----CCCCHHHHH-------HHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCCCCChhhHHHHHHHH-------HHHHHHHHHhcCCCcEEEEEe
Confidence 85332 1222221100 014667789999999998875
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-12 Score=112.20 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||+|||+|.++.. +. .+.+|+|+|+|+.+++.+++++...++..+++++++|+.++. ++||+|++....
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence 4788999999999999999 87 478999999999999999999999888668999999998865 789999974211
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
. . ..++..+.++|+|||.+++.+
T Consensus 269 ~-----~----------~~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 269 F-----A----------HKFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp T-----G----------GGGHHHHHHHEEEEEEEEEEE
T ss_pred h-----H----------HHHHHHHHHHcCCCCEEEEEE
Confidence 1 0 126999999999999988865
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=109.06 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=64.5
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC-C
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD-N 167 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~ 167 (305)
.+.+...+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... .++++++++|+.++++++ .
T Consensus 19 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~---~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhcc---CCCeEEEEChHHhCCcccCC
Confidence 344555677778899999999999999999976 58999999999999999988653 247999999999988764 4
Q ss_pred Cee
Q 042544 168 SFD 170 (305)
Q Consensus 168 ~fD 170 (305)
.|+
T Consensus 95 ~~~ 97 (244)
T 1qam_A 95 SYK 97 (244)
T ss_dssp CCE
T ss_pred CeE
Confidence 553
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=109.03 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=88.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhh-cC-----CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQF-SS-----TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
...++.+|||+|||+|.++..+++. +. .+++|+|+++.+++.|+.++...+. ++.++++|.... .+.++||
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~-~~~~~fD 203 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLAN-LLVDPVD 203 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSC-CCCCCEE
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCc-cccCCcc
Confidence 4456789999999999999998854 22 7899999999999999999887776 589999998763 3457899
Q ss_pred EEEecccccccCChhhh-hhcC----CCCC--cccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEI-EIGD----GLPD--IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~-~~~~----~~~~--~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++.-.+++++..... .... +... ..++.++.+.|+|||.+++..
T Consensus 204 ~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 204 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999887776654321 0000 1111 136889999999999988875
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=108.25 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.+..+|||||||+|-++..++.. +..+|+++|+++.|++.+++++...|.. ..+.+.|...-+ +.+.||+|++.-+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~-p~~~~DvaL~lkt 207 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR-LDEPADVTLLLKT 207 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC-CCSCCSEEEETTC
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC-CCCCcchHHHHHH
Confidence 44679999999999999999854 7899999999999999999999988764 789999998754 4578999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++|+.+...-. .+ ++.+.|+++|.++-..
T Consensus 208 i~~Le~q~kg~---------g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 208 LPCLETQQRGS---------GW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp HHHHHHHSTTH---------HH-HHHHHSSCSEEEEEEE
T ss_pred HHHhhhhhhHH---------HH-HHHHHhCCCCEEEecc
Confidence 99998775532 34 8999999999877654
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=111.18 Aligned_cols=100 Identities=21% Similarity=0.246 Sum_probs=78.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. ++++++|+.++.. .+||+|++.-.
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~--~~fD~Vv~dPP 362 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV--KGFDTVIVDPP 362 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC--TTCSEEEECCC
T ss_pred cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc--cCCCEEEEcCC
Confidence 457789999999999999999976 689999999999999999999887775 9999999988642 27999998432
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...... . +++.+ +.|+|+|.++++.
T Consensus 363 r~g~~~--~-----------~~~~l-~~l~p~givyvsc 387 (425)
T 2jjq_A 363 RAGLHP--R-----------LVKRL-NREKPGVIVYVSC 387 (425)
T ss_dssp TTCSCH--H-----------HHHHH-HHHCCSEEEEEES
T ss_pred ccchHH--H-----------HHHHH-HhcCCCcEEEEEC
Confidence 211110 1 34444 4589999988864
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=116.09 Aligned_cols=115 Identities=11% Similarity=0.129 Sum_probs=84.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC-CCCeEEEEcCCCCCCC----CCCCeeEEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV-DKTCNFVKADFMKMPF----PDNSFDAVY 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~~d~~~~~~----~~~~fD~v~ 173 (305)
.++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...++ .++++++++|+.++.. ..++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 47789999999999999999975346999999999999999999998887 5579999999976421 146899999
Q ss_pred ecccccccCChhhhhhcCCCCC-cccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPD-IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.-.......... ...... ...+.++.+.|+|||.+++..
T Consensus 299 ~dpP~~~~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 299 MDPPKFVENKSQL---MGACRGYKDINMLAIQLLNEGGILLTFS 339 (396)
T ss_dssp ECCSSTTTCSSSS---SCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCCCCChhHH---HHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 8532211100000 000000 115788999999999999876
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-12 Score=123.62 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=84.5
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCC-CCCCCCCeeEEEeccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMK-MPFPDNSFDAVYAIEA 177 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~-~~~~~~~fD~v~~~~~ 177 (305)
++.+|||+|||||.+++.++.....+|+++|+|+.+++.|+++++..++. .+++++++|+.+ ++...++||+|++.-.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 68899999999999999998753457999999999999999999998886 589999999987 3444578999998542
Q ss_pred ccc-------cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCH-------APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~-------~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
... ..+.... -...+..+.++|+|||.+++..
T Consensus 619 ~f~~~~~~~~~~~~~~~-------~~~ll~~a~~~LkpgG~L~~s~ 657 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRD-------HLALMKDLKRLLRAGGTIMFSN 657 (703)
T ss_dssp SBC-------CCBHHHH-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCccchhHHHHHHH-------HHHHHHHHHHhcCCCcEEEEEE
Confidence 110 0010000 0115888899999999999875
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.7e-12 Score=107.82 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=73.2
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
.+.+...+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.+++++.. .++++++++|+.++++++.+
T Consensus 39 ~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~---~~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 39 VNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL---YNNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH---CSSEEEEESCTTTSCGGGSC
T ss_pred HHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc---CCCeEEEECchhhCCcccCC
Confidence 344556778888999999999999999999986 78999999999999999998763 24799999999998888778
Q ss_pred eeEEEeccc
Q 042544 169 FDAVYAIEA 177 (305)
Q Consensus 169 fD~v~~~~~ 177 (305)
||+|+++..
T Consensus 115 fD~Iv~NlP 123 (295)
T 3gru_A 115 FNKVVANLP 123 (295)
T ss_dssp CSEEEEECC
T ss_pred ccEEEEeCc
Confidence 999997643
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-14 Score=118.41 Aligned_cols=120 Identities=15% Similarity=0.191 Sum_probs=82.6
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC-CCe
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD-NSF 169 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~f 169 (305)
.+...+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++. ...+++++++|+.++++++ ++|
T Consensus 20 ~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCcccCCCc
Confidence 3445677788899999999999999999976 5899999999999998877654 2357999999999988764 678
Q ss_pred eEEEecccccccCChhhhhhc-CCCCCcccH----HHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIG-DGLPDIRST----RKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~-~~~~~~~~l----~~~~~~L~~gG~~~i~~ 216 (305)
.|+++... +........+. ........+ +.+.++|+|||.+.+..
T Consensus 96 -~vv~n~Py-~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 96 -KIVGNIPY-HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp -EEEEECCS-SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred -EEEEeCCc-cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 55553211 11111000000 000001134 77999999999887644
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=116.78 Aligned_cols=117 Identities=20% Similarity=0.181 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC----CCCCeeEEEe
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF----PDNSFDAVYA 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~fD~v~~ 174 (305)
.++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...++.++++++++|+.+... ++++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 378899999999999999999763459999999999999999999988876589999999876421 2568999998
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.-...............+ ....+.++.++|+|||.+++.+.
T Consensus 296 dpP~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRA--YFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHH--HHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHH--HHHHHHHHHHhcCCCcEEEEEEC
Confidence 533211111000000000 01157888999999999888763
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.8e-11 Score=107.53 Aligned_cols=120 Identities=16% Similarity=0.117 Sum_probs=90.7
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cC--------------------------------------CeEEEE
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SS--------------------------------------TSVTGL 129 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~--------------------------------------~~v~gv 129 (305)
...++...+..++..|||++||+|.+++.++.. .+ .+|+|+
T Consensus 190 Aa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 269 (393)
T 3k0b_A 190 AAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGG 269 (393)
T ss_dssp HHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 345566777788899999999999999988843 11 469999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc-cCChhhhhhcCCCCCcccHHHHHHHHHh
Q 042544 130 NNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH-APDAAEIEIGDGLPDIRSTRKCLEALKQ 208 (305)
Q Consensus 130 D~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 208 (305)
|+++.|++.|++++...++..+++++++|+.+++.+ ++||+|+++-.... +.+.... ..+.+.+.+.|++
T Consensus 270 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l--------~~ly~~lg~~lk~ 340 (393)
T 3k0b_A 270 DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAV--------RQLYREMGIVYKR 340 (393)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHH--------HHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhH--------HHHHHHHHHHHhc
Confidence 999999999999999999877899999999998765 58999998744321 1111111 1146667777876
Q ss_pred --CCceEEEec
Q 042544 209 --AGFEVIWEK 217 (305)
Q Consensus 209 --gG~~~i~~~ 217 (305)
||.+.+.+.
T Consensus 341 ~~g~~~~iit~ 351 (393)
T 3k0b_A 341 MPTWSVYVLTS 351 (393)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEEC
Confidence 888777653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-12 Score=109.59 Aligned_cols=98 Identities=12% Similarity=0.028 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc--C-CCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA--G-VDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~-~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
+.+.+|||||||+|..+..+++.+ .+|+++|+++.+++.|++++... + ..++++++.+|+..+. ++||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 355799999999999999998664 99999999999999998765321 1 1357999999998754 789999975
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+++.. +++++.++|+|||.+++..
T Consensus 147 -----~~dp~~-----------~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 -----QEPDIH-----------RIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----SCCCHH-----------HHHHHHTTEEEEEEEEEEE
T ss_pred -----CCChHH-----------HHHHHHHhcCCCcEEEEEc
Confidence 234432 5999999999999999864
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=113.35 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~ 177 (305)
.++.+|||+|||||.++..++.. ++.|+++|+|+.+++.|+++++..++. ..+.++|+.++ +...+.||+|++.-.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 45899999999999999999976 677999999999999999999988875 35678998763 221344999997532
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...-........... -..++..+.++|+|||.+++.+
T Consensus 290 ~f~~~~~~~~~~~~~--~~~ll~~a~~~LkpGG~Lv~~s 326 (393)
T 4dmg_A 290 TLVKRPEELPAMKRH--LVDLVREALRLLAEEGFLWLSS 326 (393)
T ss_dssp CCCSSGGGHHHHHHH--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCHHHHHHHHHH--HHHHHHHHHHhcCCCCEEEEEE
Confidence 211100000000000 0125788899999999998765
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-12 Score=117.11 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=83.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC----CCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF----PDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~fD~v~~~ 175 (305)
++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...++.. ++++++|+.++.. .+++||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 7789999999999999999976 7899999999999999999999888754 9999999976421 25689999974
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
-................ ...++.++.++|+|||.+++.+.
T Consensus 287 pP~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRA--YKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHH--HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHH--HHHHHHHHHHhcCCCCEEEEEEC
Confidence 32211110000000000 01157889999999999998763
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=104.17 Aligned_cols=121 Identities=11% Similarity=0.085 Sum_probs=91.8
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cC--------------------------------------CeEEE
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SS--------------------------------------TSVTG 128 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~--------------------------------------~~v~g 128 (305)
....++...+..++..|||.+||+|.+++..+.. .+ .+|+|
T Consensus 182 LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 182 MAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 3345566777788899999999999999998843 11 46999
Q ss_pred EcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc-cCChhhhhhcCCCCCcccHHHHHHHHH
Q 042544 129 LNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH-APDAAEIEIGDGLPDIRSTRKCLEALK 207 (305)
Q Consensus 129 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~ 207 (305)
+|+++.|++.|++++...|+.+.++++++|+.+++.+ .+||+|++.-.... +.+.... ..+.+++.+.|+
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l--------~~ly~~lg~~lk 332 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAV--------DILYNEMGETFA 332 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHH--------HHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHH--------HHHHHHHHHHHh
Confidence 9999999999999999999887899999999998765 48999998754321 2222111 114666777887
Q ss_pred h--CCceEEEec
Q 042544 208 Q--AGFEVIWEK 217 (305)
Q Consensus 208 ~--gG~~~i~~~ 217 (305)
+ ||.+.+.+.
T Consensus 333 ~~~g~~~~iit~ 344 (384)
T 3ldg_A 333 PLKTWSQFILTN 344 (384)
T ss_dssp TCTTSEEEEEES
T ss_pred hCCCcEEEEEEC
Confidence 6 888777653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-12 Score=112.80 Aligned_cols=106 Identities=15% Similarity=0.103 Sum_probs=73.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcC----CHHHHHHHHHHHHhcCCCCCeEEEEc-CCCCCCCCCCCee
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNN----NEYQITRGKELNRFAGVDKTCNFVKA-DFMKMPFPDNSFD 170 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD 170 (305)
..+.++.+|||+|||+|.++..+++. .+|+|+|+ ++.+++.+. ....+ .+++.++++ |+..++ +++||
T Consensus 78 ~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~--~~~fD 150 (305)
T 2p41_A 78 NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP--PERCD 150 (305)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC--CCCCS
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC--cCCCC
Confidence 34567889999999999999999976 58999999 565442111 01111 146899999 887764 56899
Q ss_pred EEEeccccc---ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATC---HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~---~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+|..+.. +..+.... +.++..+.++|+|||.+++..
T Consensus 151 ~V~sd~~~~~g~~~~d~~~~--------l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 151 TLLCDIGESSPNPTVEAGRT--------LRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp EEEECCCCCCSSHHHHHHHH--------HHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEECCccccCcchhhHHHH--------HHHHHHHHHHhCCCCEEEEEe
Confidence 999976653 22222110 125888899999999888854
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-11 Score=106.69 Aligned_cols=115 Identities=5% Similarity=-0.030 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 042544 83 ESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM 162 (305)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~ 162 (305)
........++.+.+... +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++..++ ++++++++|+.++
T Consensus 197 ~~~~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~ 273 (369)
T 3bt7_A 197 AMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEF 273 (369)
T ss_dssp HHHHHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHH
T ss_pred HHHHHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHH
Confidence 33445556666666654 578999999999999999874 67999999999999999999998887 4799999998763
Q ss_pred C--CCC--------------CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 163 P--FPD--------------NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 163 ~--~~~--------------~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
. +.. .+||+|++.- + .. ....++.+.|+++|.+++.+.
T Consensus 274 ~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dP-------P-r~---------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 274 TQAMNGVREFNRLQGIDLKSYQCETIFVDP-------P-RS---------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp HHHHSSCCCCTTGGGSCGGGCCEEEEEECC-------C-TT---------CCCHHHHHHHTTSSEEEEEES
T ss_pred HHHHhhccccccccccccccCCCCEEEECc-------C-cc---------ccHHHHHHHHhCCCEEEEEEC
Confidence 1 111 3799998531 1 10 135678888889998888653
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=101.44 Aligned_cols=80 Identities=9% Similarity=0.130 Sum_probs=66.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC---
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD--- 166 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--- 166 (305)
+.+...+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.|++.+++++.. ..+++++++|+.++++++
T Consensus 19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 19 QKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhcc
Confidence 44555678888999999999999999999976 68999999999999999998754 357999999999987643
Q ss_pred -CCeeEEEe
Q 042544 167 -NSFDAVYA 174 (305)
Q Consensus 167 -~~fD~v~~ 174 (305)
++|| |++
T Consensus 95 ~~~~~-vv~ 102 (255)
T 3tqs_A 95 DKPLR-VVG 102 (255)
T ss_dssp SSCEE-EEE
T ss_pred CCCeE-EEe
Confidence 4688 444
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-11 Score=110.36 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=92.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--------------cCCeEEEEcCCHHHHHHHHHHHHhcCCCC-CeEE
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--------------SSTSVTGLNNNEYQITRGKELNRFAGVDK-TCNF 154 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~ 154 (305)
+.+...+.+.++.+|||.|||+|.++..+++. ....++|+|+++.+++.|+.++...+... ++.+
T Consensus 161 ~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i 240 (445)
T 2okc_A 161 QAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPI 240 (445)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSE
T ss_pred HHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCE
Confidence 34555566777889999999999999988853 24789999999999999999887777642 5789
Q ss_pred EEcCCCCCCCCCCCeeEEEecccccccCChhhh----hhc--CCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 155 VKADFMKMPFPDNSFDAVYAIEATCHAPDAAEI----EIG--DGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 155 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~----~~~--~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.++|....+.. ++||+|+++-.+.+....... .+. .+-....++.++.+.|+|||.+.+..
T Consensus 241 ~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 241 VCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp EECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 99999876543 489999998766554322110 000 00001347999999999999988765
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.9e-11 Score=105.27 Aligned_cols=119 Identities=19% Similarity=0.190 Sum_probs=90.7
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc-C--------------------------------------CeEEEE
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS-S--------------------------------------TSVTGL 129 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--------------------------------------~~v~gv 129 (305)
...+....+..++.+|||++||+|.+++.++... + .+|+|+
T Consensus 184 Aa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 263 (385)
T 3ldu_A 184 AAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGY 263 (385)
T ss_dssp HHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEE
T ss_pred HHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEE
Confidence 3455666777888999999999999999987431 1 579999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc-cCChhhhhhcCCCCCcccHHHHHHHHHh
Q 042544 130 NNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH-APDAAEIEIGDGLPDIRSTRKCLEALKQ 208 (305)
Q Consensus 130 D~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 208 (305)
|+++.+++.|++++...++.+.+++.++|+.+++.+ ++||+|++.-.... +.+.... ..+.+++.+.|++
T Consensus 264 Did~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l--------~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 264 DIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSV--------KQLYKELGYAFRK 334 (385)
T ss_dssp ESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHH--------HHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHH--------HHHHHHHHHHHhh
Confidence 999999999999999988877899999999997764 58999999765432 2111111 1146677778887
Q ss_pred --CCceEEEe
Q 042544 209 --AGFEVIWE 216 (305)
Q Consensus 209 --gG~~~i~~ 216 (305)
||.+.+.+
T Consensus 335 ~~g~~~~iit 344 (385)
T 3ldu_A 335 LKNWSYYLIT 344 (385)
T ss_dssp SBSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 78777765
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=100.50 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=68.5
Q ss_pred HHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC---CC
Q 042544 94 LQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD---NS 168 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~ 168 (305)
..+.+.++.+|||+|||+|..+..+++. ..++|+++|+++.+++.++++++..++. +++++++|+..++... ++
T Consensus 96 ~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~ 174 (309)
T 2b9e_A 96 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHE 174 (309)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTT
T ss_pred HHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccccccCC
Confidence 3567788999999999999999999964 3589999999999999999999998874 7999999998765332 57
Q ss_pred eeEEEe
Q 042544 169 FDAVYA 174 (305)
Q Consensus 169 fD~v~~ 174 (305)
||.|++
T Consensus 175 fD~Vl~ 180 (309)
T 2b9e_A 175 VHYILL 180 (309)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 999996
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-11 Score=101.18 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=67.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC-C
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN-S 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~ 168 (305)
+.+...+.+.++ +|||||||+|.++..+++. +.+|+|+|+++.|++.+++++. ..+++++++|+.++++++. .
T Consensus 37 ~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~----~~~v~vi~~D~l~~~~~~~~~ 110 (271)
T 3fut_A 37 RRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLS----GLPVRLVFQDALLYPWEEVPQ 110 (271)
T ss_dssp HHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTT----TSSEEEEESCGGGSCGGGSCT
T ss_pred HHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcC----CCCEEEEECChhhCChhhccC
Confidence 445556778888 9999999999999999986 6899999999999999998765 2479999999998877542 5
Q ss_pred eeEEEecc
Q 042544 169 FDAVYAIE 176 (305)
Q Consensus 169 fD~v~~~~ 176 (305)
+|.|+++.
T Consensus 111 ~~~iv~Nl 118 (271)
T 3fut_A 111 GSLLVANL 118 (271)
T ss_dssp TEEEEEEE
T ss_pred ccEEEecC
Confidence 78887754
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.6e-11 Score=102.45 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=67.8
Q ss_pred HHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CC---CC
Q 042544 94 LQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FP---DN 167 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~---~~ 167 (305)
..+.+.++.+|||+|||+|..+..+++. ++.+|+|+|+|+.|++.|++++...+ .+++++++|+..++ ++ .+
T Consensus 20 ~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~ 97 (301)
T 1m6y_A 20 EFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIE 97 (301)
T ss_dssp HHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCS
T ss_pred HhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCC
Confidence 3567778899999999999999999965 46899999999999999999988766 57999999998764 11 15
Q ss_pred CeeEEEecc
Q 042544 168 SFDAVYAIE 176 (305)
Q Consensus 168 ~fD~v~~~~ 176 (305)
+||.|++..
T Consensus 98 ~~D~Vl~D~ 106 (301)
T 1m6y_A 98 KVDGILMDL 106 (301)
T ss_dssp CEEEEEEEC
T ss_pred CCCEEEEcC
Confidence 799998743
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-11 Score=104.10 Aligned_cols=88 Identities=17% Similarity=0.145 Sum_probs=69.8
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCH-------HHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNE-------YQITRGKELNRFAGVDKTCNFVKADFMKM-P 163 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~-------~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~ 163 (305)
+...+.+.++.+|||+|||+|..+..++.. +++|+|+|+|+ .+++.|++++...++..+++++++|+.++ +
T Consensus 75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~ 153 (258)
T 2r6z_A 75 IAKAVNHTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMP 153 (258)
T ss_dssp HHHHTTGGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHH
T ss_pred HHHHhCcCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHH
Confidence 333445556789999999999999999986 78999999999 99999988776666555699999999873 3
Q ss_pred -CCC--CCeeEEEecccccc
Q 042544 164 -FPD--NSFDAVYAIEATCH 180 (305)
Q Consensus 164 -~~~--~~fD~v~~~~~l~~ 180 (305)
+++ ++||+|++.-.+.+
T Consensus 154 ~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 154 ALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHHHHCCCSEEEECCCC--
T ss_pred hhhccCCCccEEEECCCCCC
Confidence 444 68999999776655
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.6e-11 Score=106.52 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=81.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
+.+...+...++.+|||+|||+|.++..+++. +..+++|+|+++.+++.| .+++++++|+...+. ++
T Consensus 29 ~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~-~~ 97 (421)
T 2ih2_A 29 DFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEP-GE 97 (421)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCC-SS
T ss_pred HHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCc-cC
Confidence 44555565556779999999999999999964 468999999999998765 368999999987643 46
Q ss_pred CeeEEEecccccc----------cCChhhhhh------cCCCCC--cccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCH----------APDAAEIEI------GDGLPD--IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~----------~~~~~~~~~------~~~~~~--~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|+++-.... +++...... ..+..+ ..+++.+.++|+|||.+++..
T Consensus 98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~ 164 (421)
T 2ih2_A 98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 164 (421)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8999999643221 212211000 000000 136888999999999988865
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-10 Score=95.60 Aligned_cols=73 Identities=21% Similarity=0.324 Sum_probs=61.2
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
.+.+...+.+.++.+|||||||+|.++..+++.+..+|+|+|+++.+++.++++ . ..+++++++|+..+++++
T Consensus 20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTTCCGGG
T ss_pred HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhhCChhH
Confidence 344556777888999999999999999999976458999999999999999876 1 347999999999988764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-10 Score=95.58 Aligned_cols=71 Identities=11% Similarity=0.220 Sum_probs=59.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCe----EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTS----VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP 165 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~----v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (305)
+.+...+.+.++.+|||||||+|.++..+++. +.+ |+|+|+++.|++.++++. ..+++++++|+.+++++
T Consensus 32 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIRPERGERMVEIGPGLGALTGPVIAR-LATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHCCCTTCEEEEECCTTSTTHHHHHHH-HCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGG
T ss_pred HHHHHhcCCCCcCEEEEEccccHHHHHHHHHh-CCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChh
Confidence 44555677888999999999999999999965 344 999999999999999883 24799999999998765
Q ss_pred C
Q 042544 166 D 166 (305)
Q Consensus 166 ~ 166 (305)
+
T Consensus 106 ~ 106 (279)
T 3uzu_A 106 S 106 (279)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-09 Score=101.67 Aligned_cols=123 Identities=19% Similarity=0.275 Sum_probs=87.3
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-------------------------------------------cCCe
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-------------------------------------------SSTS 125 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-------------------------------------------~~~~ 125 (305)
...+....+..++.+|||.+||+|.+++..+.. +..+
T Consensus 179 Aa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~ 258 (703)
T 3v97_A 179 AAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH 258 (703)
T ss_dssp HHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence 345566677778889999999999999988742 1258
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEecccccc-cCCh-hhhhhcCCCCCcccHHH
Q 042544 126 VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYAIEATCH-APDA-AEIEIGDGLPDIRSTRK 201 (305)
Q Consensus 126 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~~~l~~-~~~~-~~~~~~~~~~~~~~l~~ 201 (305)
|+|+|+++.+++.|++++...|+.+.+++.++|+.++. ..+++||+|+++--... +.+. ....+ ...+.+
T Consensus 259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~l------y~~l~~ 332 (703)
T 3v97_A 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIAL------HSLLGR 332 (703)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHH------HHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHH------HHHHHH
Confidence 99999999999999999999999878999999998863 33448999999754321 1111 11110 012333
Q ss_pred HHHHHHhCCceEEEec
Q 042544 202 CLEALKQAGFEVIWEK 217 (305)
Q Consensus 202 ~~~~L~~gG~~~i~~~ 217 (305)
+.+.+.|||.+.+.+.
T Consensus 333 ~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 333 IMKNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHHHCTTCEEEEEES
T ss_pred HHHhhCCCCeEEEEeC
Confidence 4444457998888764
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-10 Score=97.54 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=68.3
Q ss_pred cCCCCCCeEEEEcCCC------ChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEE-EEcCCCCCCCCC
Q 042544 96 LGLKSGQKVLDVGCGI------GGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNF-VKADFMKMPFPD 166 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~------G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~ 166 (305)
+.++++.+|||+|||+ |. ..+++. + +++|+|+|+|+. + .++++ +++|+.+++++
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------------~~v~~~i~gD~~~~~~~- 121 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------------SDADSTLIGDCATVHTA- 121 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------------CSSSEEEESCGGGCCCS-
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------------CCCEEEEECccccCCcc-
Confidence 4677899999999955 65 334433 3 589999999987 1 25889 99999987764
Q ss_pred CCeeEEEeccccccc----CChhhhhhcCCCCC-cccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHA----PDAAEIEIGDGLPD-IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~----~~~~~~~~~~~~~~-~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|++....... .+... .... ..+++++.++|||||.+++..
T Consensus 122 ~~fD~Vvsn~~~~~~g~~~~d~~~-----~~~l~~~~l~~a~r~LkpGG~~v~~~ 171 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKHVTKENDS-----KEGFFTYLCGFIKQKLALGGSIAVKI 171 (290)
T ss_dssp SCEEEEEECCCCCC---CCSCCCC-----CCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEEcCCccccccccccccc-----hHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 689999986432110 01000 0000 126889999999999999865
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.5e-10 Score=99.30 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=64.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc--CCCCCeEEEEcCCCCC-CC-CCCCeeEEEe
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA--GVDKTCNFVKADFMKM-PF-PDNSFDAVYA 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~d~~~~-~~-~~~~fD~v~~ 174 (305)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|++++... ++ .+++++++|+.+. +. ++++||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEE
Confidence 35889999999999999999876 789999999999999999999887 76 5899999999874 32 2357999998
Q ss_pred c
Q 042544 175 I 175 (305)
Q Consensus 175 ~ 175 (305)
.
T Consensus 170 D 170 (410)
T 3ll7_A 170 D 170 (410)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-10 Score=94.64 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=68.5
Q ss_pred HHHHHHcCCCCC--CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcC--------CCCCeEEEEcCC
Q 042544 90 HFLALQLGLKSG--QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAG--------VDKTCNFVKADF 159 (305)
Q Consensus 90 ~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~~~~~~d~ 159 (305)
+.+...+.+.++ .+|||+|||+|..+..++.. +++|+++|+++.+.+.+++.++... +..+++++++|+
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 455556777777 89999999999999999976 7799999999998777766554321 224689999998
Q ss_pred CC-CCCCCCCeeEEEecccccc
Q 042544 160 MK-MPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 160 ~~-~~~~~~~fD~v~~~~~l~~ 180 (305)
.+ ++...++||+|++.-.+.+
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCCC
Confidence 76 3322246999998766654
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.8e-10 Score=101.29 Aligned_cols=101 Identities=16% Similarity=-0.021 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhc---------------CCCCCeEEEEcCCCCCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFA---------------GVDKTCNFVKADFMKMP 163 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~---------------~~~~~~~~~~~d~~~~~ 163 (305)
++.+|||+|||+|..++.++.. ++.+|+++|+++.+++.++++++.. ++. +++++++|+..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence 5789999999999999999965 4578999999999999999999888 664 4999999987632
Q ss_pred -CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 164 -FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 164 -~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+.||+|++. ... .... +++.+.+.|++||.+++..
T Consensus 126 ~~~~~~fD~I~lD-P~~---~~~~-----------~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 AERHRYFHFIDLD-PFG---SPME-----------FLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHSTTCEEEEEEC-CSS---CCHH-----------HHHHHHHHEEEEEEEEEEE
T ss_pred HhccCCCCEEEeC-CCC---CHHH-----------HHHHHHHhcCCCCEEEEEe
Confidence 113579999843 211 1111 5888999999999877754
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.7e-10 Score=100.59 Aligned_cols=103 Identities=13% Similarity=-0.057 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cC-CeEEEEcCCHHHHHHHHHHHHhcCCCCC-eEEEEcCCCCC-C-CCCCCeeEEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SS-TSVTGLNNNEYQITRGKELNRFAGVDKT-CNFVKADFMKM-P-FPDNSFDAVY 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~~-~-~~~~~fD~v~ 173 (305)
.++.+|||++||+|.+++.++.. .+ .+|+++|+++.+++.++++++..++.++ ++++++|+.++ . ...+.||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 36789999999999999999964 24 6899999999999999999999988766 99999998653 1 1145799998
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.- . ..... +++.+.+.|++||.++++.
T Consensus 131 lDP-~---g~~~~-----------~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP-F---GTPVP-----------FIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC-S---SCCHH-----------HHHHHHHHEEEEEEEEEEE
T ss_pred ECC-C---cCHHH-----------HHHHHHHHhCCCCEEEEEe
Confidence 753 1 11111 5888999999999887765
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=101.59 Aligned_cols=126 Identities=13% Similarity=0.018 Sum_probs=89.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc-------------------CCeEEEEcCCHHHHHHHHHHHHhcCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS-------------------STSVTGLNNNEYQITRGKELNRFAGVDK 150 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~ 150 (305)
..+...+.+.++.+|||.|||+|.++..+++.. ...++|+|+++.++..|+.++...+...
T Consensus 159 ~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~ 238 (541)
T 2ar0_A 159 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 238 (541)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCc
Confidence 344555667778899999999999998887431 2479999999999999999887766643
Q ss_pred ----CeEEEEcCCCCCC-CCCCCeeEEEecccccccCChhhhhhcCCCC----CcccHHHHHHHHHhCCceEEEe
Q 042544 151 ----TCNFVKADFMKMP-FPDNSFDAVYAIEATCHAPDAAEIEIGDGLP----DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 151 ----~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+.+.++|....+ .+.+.||+|+++-.+....... .....+.+ ...++..+.+.|+|||++.+..
T Consensus 239 ~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~-~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 239 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN-ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCC-CCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccCCeEeCCCcccccccccCCeEEEECCCcccccchh-hHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 2788999987633 3456899999976554332211 00000000 1237899999999999988765
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-10 Score=94.21 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=62.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCe--EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTS--VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~--v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
+.+...+.+.++.+|||||||+|.++. ++. +.+ |+|+|+++.|++.++++.... ++++++++|+..+++++.
T Consensus 11 ~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~ 84 (252)
T 1qyr_A 11 DSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHH
T ss_pred HHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHh
Confidence 445556677888999999999999999 654 456 999999999999998865432 479999999998776431
Q ss_pred -----CeeEEEecc
Q 042544 168 -----SFDAVYAIE 176 (305)
Q Consensus 168 -----~fD~v~~~~ 176 (305)
..|.|+++.
T Consensus 85 ~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 85 AEKMGQPLRVFGNL 98 (252)
T ss_dssp HHHHTSCEEEEEEC
T ss_pred hcccCCceEEEECC
Confidence 235666543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-09 Score=99.46 Aligned_cols=126 Identities=18% Similarity=0.070 Sum_probs=87.5
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc----------------CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeE
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS----------------STSVTGLNNNEYQITRGKELNRFAGVDKTCN 153 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 153 (305)
++|...+.+.++ +|||.+||||.++..+++.. ...++|+|+++.++..|+.++...++..++.
T Consensus 235 ~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~ 313 (544)
T 3khk_A 235 TLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFG 313 (544)
T ss_dssp HHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCC
T ss_pred HHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 444555566555 99999999999988875321 4689999999999999999988878765555
Q ss_pred EEEcCCCCCC-CCCCCeeEEEecccccc--cCChhh---hhhcCC--------C-----CCcccHHHHHHHHHhCCceEE
Q 042544 154 FVKADFMKMP-FPDNSFDAVYAIEATCH--APDAAE---IEIGDG--------L-----PDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 154 ~~~~d~~~~~-~~~~~fD~v~~~~~l~~--~~~~~~---~~~~~~--------~-----~~~~~l~~~~~~L~~gG~~~i 214 (305)
+.++|....+ +++.+||+|+++-.+.. ...... .....+ + ..+.++..+.+.|+|||++.+
T Consensus 314 i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai 393 (544)
T 3khk_A 314 KKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL 393 (544)
T ss_dssp SSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred eeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence 5888876544 45678999999755432 111100 000011 1 123478999999999999877
Q ss_pred Ee
Q 042544 215 WE 216 (305)
Q Consensus 215 ~~ 216 (305)
..
T Consensus 394 Vl 395 (544)
T 3khk_A 394 LL 395 (544)
T ss_dssp EE
T ss_pred Ee
Confidence 64
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-08 Score=82.06 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEEcCCCCC---------------
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV--DKTCNFVKADFMKM--------------- 162 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~--------------- 162 (305)
+..+|||+|| |..+..+++.++++|+.+|.++...+.|+++++..|. .++++++.+|+.+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 5679999998 5788888864479999999999999999999999887 77899999997542
Q ss_pred C--------C-CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 163 P--------F-PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 163 ~--------~-~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
+ . ..++||+|+.-.-.. .. .+..+.+.|+|||++++
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~k~-----~~-----------~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGRFR-----VG-----------CALATAFSITRPVTLLF 152 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSSSH-----HH-----------HHHHHHHHCSSCEEEEE
T ss_pred HHHhhhhhccccCCCCCEEEEeCCCc-----hh-----------HHHHHHHhcCCCeEEEE
Confidence 1 1 236899999764211 11 46667799999998865
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.8e-09 Score=97.36 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCCChHHHHH---HhhcC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 100 SGQKVLDVGCGIGGPLREI---AQFSS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l---~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.+..|||+|||+|.+.... ++..+ .+|++||-|+ |...+++.....++.++|+++++|++++..| +++|+|++
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVS 434 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVS 434 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEEC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEE
Confidence 3457999999999884443 33323 3789999997 5667888888889989999999999998776 67999998
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCce
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFE 212 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~ 212 (305)
-.+=..+-.... +..+....+.|||||.+
T Consensus 435 EwMG~fLl~E~m---------levL~Ardr~LKPgGim 463 (637)
T 4gqb_A 435 ELLGSFADNELS---------PECLDGAQHFLKDDGVS 463 (637)
T ss_dssp CCCBTTBGGGCH---------HHHHHHHGGGEEEEEEE
T ss_pred EcCcccccccCC---------HHHHHHHHHhcCCCcEE
Confidence 554222222211 11466667889999975
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-08 Score=92.65 Aligned_cols=119 Identities=19% Similarity=0.158 Sum_probs=86.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh----cCCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCC--C-CCCCCe
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF----SSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKM--P-FPDNSF 169 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~--~-~~~~~f 169 (305)
..++.+|||.+||+|.++..+++. ....++|+|+++.++..|+.++...|.. .++.+.++|.... | .+...|
T Consensus 219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~f 298 (542)
T 3lkd_A 219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNF 298 (542)
T ss_dssp TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccc
Confidence 356789999999999999888754 2579999999999999999998877764 3678999998765 3 346789
Q ss_pred eEEEecccccccC--Chhhh---hhc-CC-C-----CCcccHHHHHHHHH-hCCceEEEe
Q 042544 170 DAVYAIEATCHAP--DAAEI---EIG-DG-L-----PDIRSTRKCLEALK-QAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~--~~~~~---~~~-~~-~-----~~~~~l~~~~~~L~-~gG~~~i~~ 216 (305)
|+|+++-.+..-. +.... .+. .+ + ..+.++..+.+.|+ +||++.+..
T Consensus 299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 9999975443211 11000 000 11 1 12347899999999 999987754
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-08 Score=83.92 Aligned_cols=114 Identities=13% Similarity=0.034 Sum_probs=72.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
..++++.+|||+|||+|.|+..+++. +...|.|+|++..+....... .. ...++..+..+++...++++.||+|+|
T Consensus 70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~--~g~~ii~~~~~~dv~~l~~~~~DlVls 146 (277)
T 3evf_A 70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QS--LGWNIITFKDKTDIHRLEPVKCDTLLC 146 (277)
T ss_dssp TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CB--TTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-Cc--CCCCeEEEeccceehhcCCCCccEEEe
Confidence 45678889999999999999998854 345788888874331000000 00 011455566766555677789999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEec
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWEK 217 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~~ 217 (305)
..+.+ -........ ..+..++.+.++|+|| |.+++...
T Consensus 147 D~apn-sG~~~~D~~----rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 147 DIGES-SSSSVTEGE----RTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp CCCCC-CSCHHHHHH----HHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred cCccC-cCchHHHHH----HHHHHHHHHHHHhCCCCCeEEEEec
Confidence 76555 222211000 0012367888999999 99999653
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.2e-08 Score=82.93 Aligned_cols=111 Identities=21% Similarity=0.238 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhc--C--CCCCeEEEEcCCCCC-CCCCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFA--G--VDKTCNFVKADFMKM-PFPDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~--~--~~~~~~~~~~d~~~~-~~~~~~fD~v 172 (305)
+...+||=||.|.|..++.+.+.+ ..+|+.+||++.+++.+++.+... + -+++++++.+|+..+ .-..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 345799999999999999999764 479999999999999999986432 1 146899999999873 3456789999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.-.. ++.. ....+-...+++.++++|+|||+++...
T Consensus 162 i~D~~-----dp~~--~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCT-----DPIG--PGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EESCC-----CCCC--TTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCC-----CcCC--CchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 86432 1110 1112333447999999999999999864
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.5e-08 Score=85.56 Aligned_cols=127 Identities=20% Similarity=0.189 Sum_probs=88.4
Q ss_pred HHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCC-----CCeEEEEcCCCCCC-CCC
Q 042544 94 LQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVD-----KTCNFVKADFMKMP-FPD 166 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----~~~~~~~~d~~~~~-~~~ 166 (305)
..+++.+|.+|||+++|.|.=+..+++. .+..|+++|+++.-+...++++.+.+.. .++.+...|...++ ...
T Consensus 142 ~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~ 221 (359)
T 4fzv_A 142 LALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEG 221 (359)
T ss_dssp HHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHST
T ss_pred HHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcc
Confidence 3578899999999999999999999864 3458999999999999999998877643 46888888887643 345
Q ss_pred CCeeEEEe----cc----cccccCChhhh---hhcCCCC--CcccHHHHHHHHHhCCceEEEeccCC
Q 042544 167 NSFDAVYA----IE----ATCHAPDAAEI---EIGDGLP--DIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 167 ~~fD~v~~----~~----~l~~~~~~~~~---~~~~~~~--~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+.||.|++ +. ++..-++.... .....+. ....+..+.+.|||||.++.++..+.
T Consensus 222 ~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 222 DTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp TCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred ccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 78999995 22 11111211000 0000000 01257788889999999999987554
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-08 Score=94.78 Aligned_cols=103 Identities=13% Similarity=0.057 Sum_probs=71.3
Q ss_pred CCeEEEEcCCCChHHHHH---Hhhc-----------CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-
Q 042544 101 GQKVLDVGCGIGGPLREI---AQFS-----------STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP- 165 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l---~~~~-----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~- 165 (305)
+..|||||||+|.++... ++.. ..+|++||-|+.+....+.+.. .++.++|+++.+|++++..|
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 468999999999996432 2211 2499999999977755555443 67778899999999987653
Q ss_pred ----CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 166 ----DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 166 ----~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
.+.+|+|++-..=....+.... ..+..+.+.|+|||.++
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~p---------e~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSP---------ECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHH---------HHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccccccchhccH---------HHHHHHHHhCCCCcEEE
Confidence 4789999986653322222111 13566678899999643
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.66 E-value=7.4e-08 Score=80.99 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=64.8
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CCC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FPD 166 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 166 (305)
+.+.+.+.++..+||++||.|..+..+++. +++|+|+|.++.+++.|++ +.. +++.++++++.+++ ...
T Consensus 14 ~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~ 87 (285)
T 1wg8_A 14 ALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALGV 87 (285)
T ss_dssp HHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcCC
Confidence 334667888999999999999999999976 7899999999999999988 543 47999999998753 223
Q ss_pred CCeeEEEec
Q 042544 167 NSFDAVYAI 175 (305)
Q Consensus 167 ~~fD~v~~~ 175 (305)
+++|.|++.
T Consensus 88 ~~vDgIL~D 96 (285)
T 1wg8_A 88 ERVDGILAD 96 (285)
T ss_dssp SCEEEEEEE
T ss_pred CCcCEEEeC
Confidence 579999963
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.6e-08 Score=83.25 Aligned_cols=115 Identities=16% Similarity=0.001 Sum_probs=70.6
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
...+.++.+|||||||+|.|+..++. .+...|+|+|++..+...+... .. ...++.....+.....++.+.+|+|+
T Consensus 85 K~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~--~g~~ii~~~~~~dv~~l~~~~~DvVL 161 (282)
T 3gcz_A 85 RGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TT--LGWNLIRFKDKTDVFNMEVIPGDTLL 161 (282)
T ss_dssp TTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CB--TTGGGEEEECSCCGGGSCCCCCSEEE
T ss_pred hcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-cc--CCCceEEeeCCcchhhcCCCCcCEEE
Confidence 34667888999999999999999884 4445799999986542211100 00 01123334433332334568899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC--CceEEEec
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA--GFEVIWEK 217 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g--G~~~i~~~ 217 (305)
|-.+.. -........ ..+..++-+.++|+|| |.+++...
T Consensus 162 SDmApn-sG~~~~D~~----rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 162 CDIGES-SPSIAVEEQ----RTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp ECCCCC-CSCHHHHHH----HHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred ecCccC-CCChHHHHH----HHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 976665 332211100 0012366678999999 99999763
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-07 Score=82.75 Aligned_cols=116 Identities=14% Similarity=-0.018 Sum_probs=74.4
Q ss_pred CCeEEEEcCCCChHHHHHHhh------------------cCCeEEEEcCC-----------HHHHHHHHHHHHhcCCCCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQF------------------SSTSVTGLNNN-----------EYQITRGKELNRFAGVDKT 151 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~------------------~~~~v~gvD~s-----------~~~l~~a~~~~~~~~~~~~ 151 (305)
..+|+|+||++|..+..+... |..+|+.-|+. +.+.+..++. .+...+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence 578999999999999887633 34678888987 5444443221 222122
Q ss_pred eEEEEcCCCC---CCCCCCCeeEEEecccccccCChhhh-hh------cCC------CCCc---------------ccHH
Q 042544 152 CNFVKADFMK---MPFPDNSFDAVYAIEATCHAPDAAEI-EI------GDG------LPDI---------------RSTR 200 (305)
Q Consensus 152 ~~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~-~~------~~~------~~~~---------------~~l~ 200 (305)
..|+.+.... ..||++++|+|+++.++|++.+.... .- ..+ ..+. .+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3566655443 46889999999999999998764211 00 000 0000 1255
Q ss_pred HHHHHHHhCCceEEEeccC
Q 042544 201 KCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 201 ~~~~~L~~gG~~~i~~~~~ 219 (305)
...+.|+|||.+++.....
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHHHEEEEEEEEEEEECC
T ss_pred HHHHHhccCCeEEEEEecC
Confidence 5589999999999976543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.7e-07 Score=80.69 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=73.7
Q ss_pred CCeEEEEcCCCChHHHHHHh---------h-------cCCeEEEEcCCHHHHHHHHHHHHhcC-----------CCCCeE
Q 042544 101 GQKVLDVGCGIGGPLREIAQ---------F-------SSTSVTGLNNNEYQITRGKELNRFAG-----------VDKTCN 153 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~---------~-------~~~~v~gvD~s~~~l~~a~~~~~~~~-----------~~~~~~ 153 (305)
..+|+|+|||+|..+..+.. . +..+|..-|+........-+.+.... ...+..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 57999999999999988721 1 35688888887766544433332210 000112
Q ss_pred E---EEcCCCCCCCCCCCeeEEEecccccccCChhh-hhh------cCC-------CCC-------------cccHHHHH
Q 042544 154 F---VKADFMKMPFPDNSFDAVYAIEATCHAPDAAE-IEI------GDG-------LPD-------------IRSTRKCL 203 (305)
Q Consensus 154 ~---~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~-~~~------~~~-------~~~-------------~~~l~~~~ 203 (305)
| +.+.+..-.+|+++||+|+++.++|++.+... +.- ..+ .+. ..+++...
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33344445688999999999999999975421 100 000 000 01467779
Q ss_pred HHHHhCCceEEEec
Q 042544 204 EALKQAGFEVIWEK 217 (305)
Q Consensus 204 ~~L~~gG~~~i~~~ 217 (305)
+.|+|||.+++...
T Consensus 213 ~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 213 AEVKRGGAMFLVCL 226 (374)
T ss_dssp HHEEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEEe
Confidence 99999999998764
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.1e-07 Score=78.43 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=66.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.+|++|||+||++|.|+..+++. +++|+|||+.+-. ... . ..++++++++|+..+..+.+.+|+|+|-.+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~l~-~~l----~---~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGPMA-QSL----M---DTGQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSCCC-HHH----H---TTTCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhhcC-hhh----c---cCCCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 578999999999999999999986 7899999987421 111 1 135799999999987766778999998544
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhC
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA 209 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g 209 (305)
. .+.. .+..+.++|..+
T Consensus 280 ~----~p~~-----------~~~l~~~wl~~~ 296 (375)
T 4auk_A 280 E----KPAK-----------VAALMAQWLVNG 296 (375)
T ss_dssp S----CHHH-----------HHHHHHHHHHTT
T ss_pred C----ChHH-----------hHHHHHHHHhcc
Confidence 3 3333 366667777766
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-07 Score=69.96 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCCC-hHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 042544 86 KRHEHFLALQLGLKSGQKVLDVGCGIG-GPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF 164 (305)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 164 (305)
+...+++.... .++.+|||||||.| ..+..|++..+..|+++|+++..++ +++.|+.+ |.
T Consensus 23 e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~-P~ 83 (153)
T 2k4m_A 23 NDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITS-PR 83 (153)
T ss_dssp HHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSS-CC
T ss_pred HHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCC-Cc
Confidence 34445555443 34579999999999 6999999755899999999886542 88899987 32
Q ss_pred CC--CCeeEEEecc
Q 042544 165 PD--NSFDAVYAIE 176 (305)
Q Consensus 165 ~~--~~fD~v~~~~ 176 (305)
.+ ..||+|++..
T Consensus 84 ~~~Y~~~DLIYsir 97 (153)
T 2k4m_A 84 MEIYRGAALIYSIR 97 (153)
T ss_dssp HHHHTTEEEEEEES
T ss_pred ccccCCcCEEEEcC
Confidence 22 3799998754
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-06 Score=82.31 Aligned_cols=118 Identities=10% Similarity=-0.037 Sum_probs=75.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhc----CCeEEEEcCCHHHHHHH--HHHHHhcCCC---CCeEEEEcCCCCCC-CCCCC
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFS----STSVTGLNNNEYQITRG--KELNRFAGVD---KTCNFVKADFMKMP-FPDNS 168 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~----~~~v~gvD~s~~~l~~a--~~~~~~~~~~---~~~~~~~~d~~~~~-~~~~~ 168 (305)
.++.+|||.|||+|.++..+++.. ..+++|+|+++.+++.| +.++....+. ....+...|+.... .....
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 467899999999999999998643 25799999999999999 4443321111 12355556665532 23578
Q ss_pred eeEEEecccccc-cCChhhh-----hhc----------CCCC--CcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCH-APDAAEI-----EIG----------DGLP--DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~-~~~~~~~-----~~~----------~~~~--~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|+++--... ....... .+. .+.. ...++..+.+.|++||.+.+..
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999765422 1111100 000 0101 1236888999999999988865
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-07 Score=79.54 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCChHHHHHHh--------hcC-----CeEEEEcCCH---HHHH-----------HHHHHHHhcC-----
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ--------FSS-----TSVTGLNNNE---YQIT-----------RGKELNRFAG----- 147 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~--------~~~-----~~v~gvD~s~---~~l~-----------~a~~~~~~~~----- 147 (305)
+..+|||||||+|..+..+++ .+. .+++++|..| .++. .|++.+....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 557999999999998888653 232 4899999876 5544 4555554310
Q ss_pred -----C---CCCeEEEEcCCCC-CCCCC----CCeeEEEecc-cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 148 -----V---DKTCNFVKADFMK-MPFPD----NSFDAVYAIE-ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 148 -----~---~~~~~~~~~d~~~-~~~~~----~~fD~v~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
+ ..+++++.+|+.+ ++..+ ..||+|+.-. .-...|+. ....+++.+.++|+|||.++
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~l---------w~~~~l~~l~~~L~pGG~l~ 210 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDM---------WTQNLFNAMARLARPGGTLA 210 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGG---------CCHHHHHHHHHHEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhh---------cCHHHHHHHHHHcCCCcEEE
Confidence 1 1357899999876 44222 2799999742 22222221 01226999999999999887
Q ss_pred E
Q 042544 214 I 214 (305)
Q Consensus 214 i 214 (305)
.
T Consensus 211 t 211 (257)
T 2qy6_A 211 T 211 (257)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.4e-07 Score=77.09 Aligned_cols=104 Identities=10% Similarity=0.108 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCCChHHHHHHhh------cCCeEEEEcCCH--------------------------HHHHHHHHHHHhcC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF------SSTSVTGLNNNE--------------------------YQITRGKELNRFAG 147 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~--------------------------~~l~~a~~~~~~~~ 147 (305)
....|||+||..|..+..++.. ++.+|+++|... ..++.++++++..|
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 3469999999999999988742 368999999642 14677899999988
Q ss_pred CC-CCeEEEEcCCCC-CC-CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 148 VD-KTCNFVKADFMK-MP-FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 148 ~~-~~~~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+. ++++++.+|+.+ +| +++++||+|+.-.-. + ... ...++.+...|+|||++++.+
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-y--~~~----------~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-Y--EST----------WDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS-H--HHH----------HHHHHHHGGGEEEEEEEEESS
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-c--ccH----------HHHHHHHHhhcCCCEEEEEcC
Confidence 84 789999999976 44 445789999865421 0 110 115888899999999888743
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.28 E-value=5.8e-07 Score=78.86 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=78.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-----------------cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEE---cC
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-----------------SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVK---AD 158 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-----------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~---~d 158 (305)
+...+|+|+||++|..+..+... |..+|+..|+........-+.+.......+..|+. +.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999887765422 34689999999888887766554311001234444 44
Q ss_pred CCCCCCCCCCeeEEEecccccccCChhh-hh-------hcCCCCC-c-------------ccHHHHHHHHHhCCceEEEe
Q 042544 159 FMKMPFPDNSFDAVYAIEATCHAPDAAE-IE-------IGDGLPD-I-------------RSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 159 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~-~~-------~~~~~~~-~-------------~~l~~~~~~L~~gG~~~i~~ 216 (305)
+....||++++|+|+++.++|++.+... +. +....+. + .+|+...+.|+|||.+++..
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 4446789999999999999999875321 00 0000000 0 13777899999999999875
Q ss_pred c
Q 042544 217 K 217 (305)
Q Consensus 217 ~ 217 (305)
.
T Consensus 210 ~ 210 (359)
T 1m6e_X 210 L 210 (359)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.7e-06 Score=69.30 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=71.2
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCCCCCCCCCeeEE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMKMPFPDNSFDAV 172 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD~v 172 (305)
...+.++.+||||||++|.|+..++...+ .+|+|+|+...-.+. -......+. .-+.+..+ |+..++. .++|.|
T Consensus 89 ~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w-~lV~~~~~~Dv~~l~~--~~~D~i 164 (321)
T 3lkz_A 89 RRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGW-NIVTMKSGVDVFYRPS--ECCDTL 164 (321)
T ss_dssp TTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTG-GGEEEECSCCTTSSCC--CCCSEE
T ss_pred hcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCC-cceEEEeccCHhhCCC--CCCCEE
Confidence 35667888999999999999998885434 479999997651100 000001122 23778877 8876653 569999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
+|--. ..-+++...+. ..+++|+-+.++|++| |-+++..
T Consensus 165 vcDig-eSs~~~~ve~~----Rtl~vLel~~~wL~~~~~~f~~KV 204 (321)
T 3lkz_A 165 LCDIG-ESSSSAEVEEH----RTIRVLEMVEDWLHRGPREFCVKV 204 (321)
T ss_dssp EECCC-CCCSCHHHHHH----HHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECc-cCCCChhhhhh----HHHHHHHHHHHHhccCCCcEEEEE
Confidence 98655 54454421110 0123566667889988 8777754
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=74.59 Aligned_cols=127 Identities=15% Similarity=0.206 Sum_probs=85.2
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--------------CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEE
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--------------STSVTGLNNNEYQITRGKELNRFAGVDKTCNF 154 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~ 154 (305)
.+++...+.+.++.+|+|-+||||.++....++. ...++|+|+++.+...|+.++.-.|.. ...+
T Consensus 206 v~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-YPRI 284 (530)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-CCEE
T ss_pred HHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-cccc
Confidence 3455667778888999999999999988765421 257999999999999999887666653 3567
Q ss_pred EEcCCCCCCC----CCCCeeEEEecccccccCChhhh-hhcCC----CCCcccHHHHHHHHH-------hCCceEEEe
Q 042544 155 VKADFMKMPF----PDNSFDAVYAIEATCHAPDAAEI-EIGDG----LPDIRSTRKCLEALK-------QAGFEVIWE 216 (305)
Q Consensus 155 ~~~d~~~~~~----~~~~fD~v~~~~~l~~~~~~~~~-~~~~~----~~~~~~l~~~~~~L~-------~gG~~~i~~ 216 (305)
.++|....|. +...||+|+++-.+.--...... ..... -....++..+.+.|+ +||++.+..
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 7888765442 23579999997655322211110 00000 011235777888886 689887764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.16 E-value=8.2e-06 Score=70.18 Aligned_cols=47 Identities=23% Similarity=0.152 Sum_probs=42.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA 146 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 146 (305)
.++..|||++||+|..+..++.. +.+++|+|+++.+++.|++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~-g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW-GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 57889999999999999998875 789999999999999999998765
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-06 Score=75.51 Aligned_cols=111 Identities=22% Similarity=0.182 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcC---C----CCCeEEEEcCCCCCC----CCCC
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAG---V----DKTCNFVKADFMKMP----FPDN 167 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~----~~~~~~~~~d~~~~~----~~~~ 167 (305)
.+..+||=||.|.|..++++.+++..+|+.|||++.+++.+++.+.... . .++++++.+|+..+- -..+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 3567999999999999999997767899999999999999998753211 1 235889999986531 1246
Q ss_pred CeeEEEecccccc-cCCh-----hhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCH-APDA-----AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~-~~~~-----~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|+.-..-.. -+++ ... ...+++.++++|+|||.++...
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lf-------t~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEF-------LRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHH-------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHH-------HHHHHHHHHHhcCCCCEEEEec
Confidence 7999986422110 0111 110 0125788999999999988753
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.6e-06 Score=73.01 Aligned_cols=113 Identities=14% Similarity=0.044 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
+.++.+|||+||++|.|+..+++. ....|.|+|++..+...... ... ...++.....+.....++.+.+|+|+|-.
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~--~~~~iv~~~~~~di~~l~~~~~DlVlsD~ 155 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT--LGWNIVKFKDKSNVFTMPTEPSDTLLCDI 155 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB--TTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc--cCCceEEeecCceeeecCCCCcCEEeecC
Confidence 468899999999999999999964 33578999997543110000 000 01123333333332334567899999965
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEecc
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWEKD 218 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~~~ 218 (305)
+.. -........ ..+..+.-+.++|+|| |.+++....
T Consensus 156 APn-sG~~~~D~~----rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 156 GES-SSNPLVERD----RTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCC-CSSHHHHHH----HHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred cCC-CCCHHHHHH----HHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 544 332211100 0012366678899999 999997643
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.4e-05 Score=63.55 Aligned_cols=106 Identities=19% Similarity=0.148 Sum_probs=62.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcC-CeEEEEcCCHH--HHHHHHHHHHhcCCCCCe---EEEEc-CCCCCCCCCCCe
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSS-TSVTGLNNNEY--QITRGKELNRFAGVDKTC---NFVKA-DFMKMPFPDNSF 169 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~---~~~~~-d~~~~~~~~~~f 169 (305)
-++|+.+|||+||+.|.|+...++..+ ..|.|.++... +.. .......+ .+.++ |+.+++ ...+
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P-------~~~~~~Gv~~i~~~~G~Df~~~~--~~~~ 140 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEP-------MLMQSYGWNIVTMKSGVDVFYKP--SEIS 140 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCC-------CCCCSTTGGGEEEECSCCGGGSC--CCCC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCC-------CcccCCCceEEEeeccCCccCCC--CCCC
Confidence 467899999999999999999986522 23344443322 100 00000233 44447 998743 4579
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCC-ceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAG-FEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG-~~~i~~ 216 (305)
|+|+|-.+-. -........ ..+.+++-+.++|+||| -+++..
T Consensus 141 DvVLSDMAPn-SG~~~vD~~----Rs~~aL~~A~~~Lk~gG~~FvvKV 183 (269)
T 2px2_A 141 DTLLCDIGES-SPSAEIEEQ----RTLRILEMVSDWLSRGPKEFCIKI 183 (269)
T ss_dssp SEEEECCCCC-CSCHHHHHH----HHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CEEEeCCCCC-CCccHHHHH----HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 9999865543 222211000 00114666678999999 788865
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.2e-05 Score=69.12 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=63.0
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F 164 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~ 164 (305)
+...+.+.++..++|..||.|..+..+++. +.++|+|+|.++.+++.++ ++ ...+++++++++.++. .
T Consensus 49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~ 123 (347)
T 3tka_A 49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAER 123 (347)
T ss_dssp HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhc
Confidence 344678889999999999999999999964 4689999999999999884 33 1358999999998752 1
Q ss_pred C-CCCeeEEEecc
Q 042544 165 P-DNSFDAVYAIE 176 (305)
Q Consensus 165 ~-~~~fD~v~~~~ 176 (305)
. .+++|.|+...
T Consensus 124 g~~~~vDgILfDL 136 (347)
T 3tka_A 124 DLIGKIDGILLDL 136 (347)
T ss_dssp TCTTCEEEEEEEC
T ss_pred CCCCcccEEEECC
Confidence 1 13699998743
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=4.3e-05 Score=61.98 Aligned_cols=112 Identities=20% Similarity=0.190 Sum_probs=67.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCCCCCCCCCeeEE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMKMPFPDNSFDAV 172 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD~v 172 (305)
...+.++.+|||+||++|.|+...+...+ .+|+|+|+...-.+. -......|. +.++|..+ |+..++ ..++|.|
T Consensus 73 k~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gw-n~v~fk~gvDv~~~~--~~~~Dtl 148 (267)
T 3p8z_A 73 RNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGW-NIVKLMSGKDVFYLP--PEKCDTL 148 (267)
T ss_dssp TTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTT-TSEEEECSCCGGGCC--CCCCSEE
T ss_pred hcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCc-CceEEEeccceeecC--CccccEE
Confidence 33667889999999999999998885433 579999996543210 000112233 36899999 986654 3669999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|-..- .-+++...+. ..+++++-+.++|++ |-+++..
T Consensus 149 lcDIge-Ss~~~~vE~~----RtlrvLela~~wL~~-~~fc~KV 186 (267)
T 3p8z_A 149 LCDIGE-SSPSPTVEES----RTIRVLKMVEPWLKN-NQFCIKV 186 (267)
T ss_dssp EECCCC-CCSCHHHHHH----HHHHHHHHHGGGCSS-CEEEEEE
T ss_pred EEecCC-CCCChhhhhh----HHHHHHHHHHHhccc-CCEEEEE
Confidence 985433 2233211000 002234445566777 6666643
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00022 Score=59.87 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=42.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcC
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAG 147 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~ 147 (305)
.++..|||..||+|..+...... +.+++|+|+++..++.+++++...+
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~-gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred CCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 67889999999999999988775 8899999999999999999987543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00061 Score=59.57 Aligned_cols=59 Identities=15% Similarity=-0.009 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM 162 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~ 162 (305)
++..|||||.|.|.+|..|++. ...+|+++|+++..+...++.. . .++++++.+|+.++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccch
Confidence 3589999999999999999964 2468999999999998887765 2 35799999999654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=4.5e-05 Score=82.57 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=54.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhc------CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCCCCCeeE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFS------STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFPDNSFDA 171 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~ 171 (305)
.+..+|||||.|||..+..+.... ..+++..|+|+...+.+++++... .+.....|..+. ++..++||+
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeE
Confidence 357899999999998766654321 247889999998887777765542 122222233331 334567999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|++.+++|-.++... ++.+++++|+|||++++.+
T Consensus 1315 via~~vl~~t~~~~~-----------~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1315 LVCNCALATLGDPAV-----------AVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EEEECC-------------------------------CCEEEEEE
T ss_pred EEEcccccccccHHH-----------HHHHHHHhcCCCcEEEEEe
Confidence 999999986666544 6999999999999988865
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00033 Score=58.76 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=62.3
Q ss_pred HcCCCCCCeEEEEcC------CCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 95 QLGLKSGQKVLDVGC------GIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc------G~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
.+-++.+++|||+|+ -.|.+...-. .+ ++.|+++|+.+-.. ... .++++|...... .+
T Consensus 104 ~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~-~p~g~~VVavDL~~~~s------------da~-~~IqGD~~~~~~-~~ 168 (344)
T 3r24_A 104 TLAVPYNMRVIHFGAGSDKGVAPGTAVLRQW-LPTGTLLVDSDLNDFVS------------DAD-STLIGDCATVHT-AN 168 (344)
T ss_dssp CCCCCTTCEEEEESCCCTTSBCHHHHHHHHH-SCTTCEEEEEESSCCBC------------SSS-EEEESCGGGEEE-SS
T ss_pred cEeecCCCEEEeCCCCCCCCCCCcHHHHHHh-CCCCcEEEEeeCccccc------------CCC-eEEEcccccccc-CC
Confidence 355678999999996 5666422211 23 36999999976331 112 559999766433 47
Q ss_pred CeeEEEeccc---ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 168 SFDAVYAIEA---TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 168 ~fD~v~~~~~---l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+||+|++-.+ -.+ .+....... .+ -..+++-+.+.|+|||.+++...
T Consensus 169 k~DLVISDMAPNtTG~-~D~d~~Rs~-~L-~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 169 KWDLIISDMYDPRTKH-VTKENDSKE-GF-FTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp CEEEEEECCCCTTSCS-SCSCCCCCC-TH-HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCEEEecCCCCcCCc-cccchhHHH-HH-HHHHHHHHHHhCcCCCEEEEEEe
Confidence 8999998543 112 111110000 00 00145567789999999999763
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0021 Score=55.88 Aligned_cols=108 Identities=9% Similarity=0.140 Sum_probs=77.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcC--------------------CCCCeEEEEc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAG--------------------VDKTCNFVKA 157 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--------------------~~~~~~~~~~ 157 (305)
.+...|+.+|||.......+... ++.+++-||. |..++.-++.+...+ ..++..++.+
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 35578999999999988888753 5678888888 888877777665531 1357899999
Q ss_pred CCCCCCC---------CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 158 DFMKMPF---------PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 158 d~~~~~~---------~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|+.+..+ ..+...++++-.++.+++...... +++.+.+.+ |+|.+++.+.
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~---------ll~~ia~~~-~~~~~v~~e~ 233 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQL---------LINTIMSKF-SHGLWISYDP 233 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHH---------HHHHHHHHC-SSEEEEEEEE
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHH---------HHHHHHhhC-CCcEEEEEec
Confidence 9987321 234578999999999999876543 466666655 7777766553
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0052 Score=55.05 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=50.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHH-hh-cC-CeEEEEcCCHHHHHHHHHHHHh--cCCC-CCeEEEEcCCC
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIA-QF-SS-TSVTGLNNNEYQITRGKELNRF--AGVD-KTCNFVKADFM 160 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~-~~-~~-~~v~gvD~s~~~l~~a~~~~~~--~~~~-~~~~~~~~d~~ 160 (305)
.++++..|+||||+.|.++..++ +. +. ++|+++|++|...+..++++.. .+.. .+++++..-+.
T Consensus 223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 45788999999999999999988 43 22 7999999999999999999887 2222 56777665554
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0068 Score=54.01 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=66.8
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C------C
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P------F 164 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~------~ 164 (305)
....+.++.+||-+|||. |..+..+++..++ +|+++|.++..++.+++ .|. +++..+-.++ . .
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~~~~~~ 250 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF----ETIDLRNSAPLRDQIDQIL 250 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC----EEEETTSSSCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC----cEEcCCCcchHHHHHHHHh
Confidence 356788999999999986 7888888865577 99999999998887754 232 3332211111 0 0
Q ss_pred CCCCeeEEEecccccc---------cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 165 PDNSFDAVYAIEATCH---------APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~---------~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
....+|+|+-.-.-.. .+.. ..+..+.++|+++|.+++.
T Consensus 251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 251 GKPEVDCGVDAVGFEAHGLGDEANTETPN------------GALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp SSSCEEEEEECSCTTCBCSGGGTTSBCTT------------HHHHHHHHHEEEEEEEECC
T ss_pred CCCCCCEEEECCCCccccccccccccccH------------HHHHHHHHHHhcCCEEEEe
Confidence 1226999985432211 1111 1488899999999988764
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.03 Score=48.06 Aligned_cols=104 Identities=12% Similarity=0.000 Sum_probs=73.8
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCC---------CCCCCee
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV--DKTCNFVKADFMKMP---------FPDNSFD 170 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~---------~~~~~fD 170 (305)
..|++||||-=.....+....+.+++-+| -|..++..++.+...+. ..+..++.+|+.+ . +..+..-
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence 47999999976665554421247999999 49999988888875432 4567899999986 3 2223455
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++++-.+++|+++..... +++.+...+.||+++++..
T Consensus 182 ~~i~Egvl~Yl~~~~~~~---------ll~~l~~~~~~gs~l~~d~ 218 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDG---------LFTEIGGLSAVGSRIAVET 218 (310)
T ss_dssp EEEECSCGGGSCHHHHHH---------HHHHHHHTCCTTCEEEEEC
T ss_pred EEEEechHhhCCHHHHHH---------HHHHHHHhCCCCeEEEEEe
Confidence 788888999999875433 5677777667887777753
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0013 Score=58.02 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=66.3
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCC
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPD 166 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~ 166 (305)
....+.++.+||-+|||. |..+..+++..++ +|+++|.++..++.+++. |.. .++..+-.++ ....
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~~~~ 256 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEITD 256 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC---EEecCCccCHHHHHHHhcC
Confidence 346788999999999985 7788888865577 799999999998888653 321 2222211110 0112
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.+|+|+-.-. ... .+..+.+.|+++|.+++.-
T Consensus 257 gg~D~vid~~g-----~~~------------~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 257 GGVNFALESTG-----SPE------------ILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp SCEEEEEECSC-----CHH------------HHHHHHHTEEEEEEEEECC
T ss_pred CCCcEEEECCC-----CHH------------HHHHHHHHHhcCCEEEEeC
Confidence 36999874322 111 4788899999999987753
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.012 Score=51.38 Aligned_cols=94 Identities=19% Similarity=0.157 Sum_probs=66.4
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
...+.++.+||-+|+|. |..+..+++..+++|+++|.++..++.+++ .|.. .++ .+...+ . ..+|+|+
T Consensus 171 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~~~~--~-~~~D~vi 239 (348)
T 3two_A 171 FSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVK---HFY-TDPKQC--K-EELDFII 239 (348)
T ss_dssp HTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCS---EEE-SSGGGC--C-SCEEEEE
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCC---eec-CCHHHH--h-cCCCEEE
Confidence 45788999999999875 777888886668999999999998887765 3432 222 333322 2 2699997
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
-.-. ... .+....+.|+++|.+++.-
T Consensus 240 d~~g-----~~~------------~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 240 STIP-----THY------------DLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp ECCC-----SCC------------CHHHHHTTEEEEEEEEECC
T ss_pred ECCC-----cHH------------HHHHHHHHHhcCCEEEEEC
Confidence 5321 111 4788889999999988753
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.03 Score=49.77 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=67.2
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC------CC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP------FP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~------~~ 165 (305)
...+.++.+||-+|||. |..+..+++..++ +|+++|.++..++.+++ .|. +.+...-.+ +. ..
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~t~ 251 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAALLG 251 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHHHS
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHHhC
Confidence 45788999999999875 7788888865577 79999999999888765 232 222211111 00 01
Q ss_pred CCCeeEEEeccccc---------ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATC---------HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~---------~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+|+|+-.-.-. |.+++.. .+..+.++|+++|.+++.-
T Consensus 252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 252 EPEVDCAVDAVGFEARGHGHEGAKHEAPAT-----------VLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp SSCEEEEEECCCTTCBCSSTTGGGSBCTTH-----------HHHHHHHHEEEEEEEEECS
T ss_pred CCCCCEEEECCCCcccccccccccccchHH-----------HHHHHHHHHhcCCEEEEec
Confidence 23699998543211 1222222 4888999999999987643
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0058 Score=53.92 Aligned_cols=99 Identities=19% Similarity=0.205 Sum_probs=66.8
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----C---
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----P--- 163 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~--- 163 (305)
....+.++.+||=+|+|. |..+..+++..++ +|+++|.++..++.+++. |.. .++...-.++ .
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~i~~~~~ 248 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT---ATVDPSAGDVVEAIAGPVG 248 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTSSCHHHHHHSTTS
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEECCCCcCHHHHHHhhhh
Confidence 456788999999999874 6777778866677 999999999998887763 332 1221111110 0
Q ss_pred CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 164 FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 164 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+.+|+|+-.- .... .+..+.++|+++|.+++..
T Consensus 249 ~~~gg~Dvvid~~-----G~~~------------~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 249 LVPGGVDVVIECA-----GVAE------------TVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp SSTTCEEEEEECS-----CCHH------------HHHHHHHHEEEEEEEEECS
T ss_pred ccCCCCCEEEECC-----CCHH------------HHHHHHHHhccCCEEEEEe
Confidence 2234799998532 1111 4888999999999988753
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.023 Score=49.93 Aligned_cols=97 Identities=20% Similarity=0.165 Sum_probs=66.7
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CCCC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~ 167 (305)
...+.++.+||-+|+|. |..+..+++..+++|+++|.++..++.+++. |.. .++..+-.++. ....
T Consensus 184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~~~g~ 256 (363)
T 3uog_A 184 KGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GAD---HGINRLEEDWVERVYALTGDR 256 (363)
T ss_dssp TTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHHTTC
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CCC---EEEcCCcccHHHHHHHHhCCC
Confidence 46778999999999874 6777777766689999999999988887653 332 22222211110 1123
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+-.-. .. .+..+.+.|+++|.+++..
T Consensus 257 g~D~vid~~g-----~~-------------~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 257 GADHILEIAG-----GA-------------GLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp CEEEEEEETT-----SS-------------CHHHHHHHEEEEEEEEEEC
T ss_pred CceEEEECCC-----hH-------------HHHHHHHHhhcCCEEEEEe
Confidence 6999885432 11 4788899999999988764
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.026 Score=49.27 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=66.8
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----C-CC
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----P-FP 165 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~-~~ 165 (305)
....+.++.+||=+|+|. |..+..+++..++ +|+++|.++..++.+++. |.. .++..+-.++ . ..
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~t~ 232 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT---DIINYKNGDIVEQILKATD 232 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC---EEECGGGSCHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc---eEEcCCCcCHHHHHHHHcC
Confidence 456788999999999874 7777778866677 899999999988887764 322 2222111111 0 12
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+|+|+-.-. .+. .+..+.+.|+++|.+++.-
T Consensus 233 g~g~D~v~d~~g-----~~~------------~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 233 GKGVDKVVIAGG-----DVH------------TFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp TCCEEEEEECSS-----CTT------------HHHHHHHHEEEEEEEEECC
T ss_pred CCCCCEEEECCC-----ChH------------HHHHHHHHHhcCCEEEEec
Confidence 236999985321 111 4888999999999988753
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.028 Score=49.61 Aligned_cols=68 Identities=16% Similarity=0.109 Sum_probs=52.5
Q ss_pred CeEEEEcCCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC--------CCCCeeEE
Q 042544 102 QKVLDVGCGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF--------PDNSFDAV 172 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD~v 172 (305)
.++||+-||.|.++..+... +. .|.++|+++..++..+.+. +...++++|+.++.. ....+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 58999999999999999865 55 4669999999988777653 246788899887631 23579999
Q ss_pred Eecc
Q 042544 173 YAIE 176 (305)
Q Consensus 173 ~~~~ 176 (305)
+...
T Consensus 76 ~ggp 79 (376)
T 3g7u_A 76 IGGP 79 (376)
T ss_dssp EECC
T ss_pred EecC
Confidence 9743
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0074 Score=53.22 Aligned_cols=96 Identities=24% Similarity=0.248 Sum_probs=64.2
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-CCCCCCeeE
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-PFPDNSFDA 171 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~ 171 (305)
.+.+.++.+||-+|+|. |..+..+++..+++|+++|.++..++.+++. |.. .++...-.+ . ... +.+|+
T Consensus 189 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~-~g~Dv 260 (369)
T 1uuf_A 189 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAAHL-KSFDF 260 (369)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHTTT-TCEEE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc---EEeccccHHHHHHhh-cCCCE
Confidence 35788999999999974 7777788866688999999999988887652 322 222111000 0 111 46899
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+-.-.- .. .+..+.+.|+++|.+++.
T Consensus 261 vid~~g~-----~~------------~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 261 ILNTVAA-----PH------------NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEECCSS-----CC------------CHHHHHTTEEEEEEEEEC
T ss_pred EEECCCC-----HH------------HHHHHHHHhccCCEEEEe
Confidence 8754221 10 477788999999988764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.022 Score=49.24 Aligned_cols=49 Identities=8% Similarity=-0.128 Sum_probs=42.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAG 147 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~ 147 (305)
..++..|||.-||+|..+...... +.+.+|+|+++..++.+++++...+
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~-gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 367899999999999988887765 8999999999999999999876544
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0059 Score=51.30 Aligned_cols=74 Identities=9% Similarity=-0.077 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C---CCCCCCeeEEEecc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M---PFPDNSFDAVYAIE 176 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~---~~~~~~fD~v~~~~ 176 (305)
+..+||+=+|||.+++.+.+. +.+++.+|.++..++..++++.. ..+++++..|... + .-+..+||+|++--
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 457999999999999998873 68999999999999988887754 3579999999754 2 12345799998754
Q ss_pred cc
Q 042544 177 AT 178 (305)
Q Consensus 177 ~l 178 (305)
..
T Consensus 168 PY 169 (283)
T 2oo3_A 168 SY 169 (283)
T ss_dssp CC
T ss_pred CC
Confidence 33
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.019 Score=45.50 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=61.2
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------C
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------F 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~ 164 (305)
..++.++.+||.+|+ |.|..+..++...+++|+++|.++..++.+++ .+.. ..+ |..+.. .
T Consensus 33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~~~~ 103 (198)
T 1pqw_A 33 VGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---YVG--DSRSVDFADEILELT 103 (198)
T ss_dssp TSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---EEE--ETTCSTHHHHHHHHT
T ss_pred HhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEe--eCCcHHHHHHHHHHh
Confidence 356788999999995 45666666665458899999999988766543 2321 111 322211 1
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
....+|+|+.+-. .. .+..+.+.|+++|.+++.
T Consensus 104 ~~~~~D~vi~~~g-----~~-------------~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 104 DGYGVDVVLNSLA-----GE-------------AIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp TTCCEEEEEECCC-----TH-------------HHHHHHHTEEEEEEEEEC
T ss_pred CCCCCeEEEECCc-----hH-------------HHHHHHHHhccCCEEEEE
Confidence 1236899985432 11 478889999999988774
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.063 Score=44.59 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=65.6
Q ss_pred CeEEEEcCCCChHHHHHHhh--------cCCeEEEEc-----CCH----------------------HHHHHH---HHHH
Q 042544 102 QKVLDVGCGIGGPLREIAQF--------SSTSVTGLN-----NNE----------------------YQITRG---KELN 143 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~--------~~~~v~gvD-----~s~----------------------~~l~~a---~~~~ 143 (305)
..|+|+||-.|..+..++.. +..+|+++| +.+ ..+... .++.
T Consensus 71 G~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~ 150 (257)
T 3tos_A 71 GVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECS 150 (257)
T ss_dssp SEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTT
T ss_pred CeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhh
Confidence 48999999999988887631 357999999 321 112211 1112
Q ss_pred HhcCC-CCCeEEEEcCCCC-CC-----CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 144 RFAGV-DKTCNFVKADFMK-MP-----FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 144 ~~~~~-~~~~~~~~~d~~~-~~-----~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+..+. .++++++.+++.+ +| .+..+||+|+.-.-. + .+. ...++.+...|+|||++++.+
T Consensus 151 ~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-Y--~~t----------~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 151 DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-Y--EPT----------KAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-H--HHH----------HHHHHHHGGGEEEEEEEEESS
T ss_pred hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-c--chH----------HHHHHHHHHHhCCCcEEEEcC
Confidence 23344 4789999999976 33 245579999865421 1 111 114777888899999988854
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.029 Score=48.37 Aligned_cols=47 Identities=17% Similarity=0.072 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCH---HHHHHHHHHHHhc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNE---YQITRGKELNRFA 146 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~---~~l~~a~~~~~~~ 146 (305)
.++..|||.-||+|..+...... +.+.+|+|+++ ..++.+++++...
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~-~r~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC---
T ss_pred CCCCEEEecCCCCCHHHHHHHHc-CCcEEEEECCccHHHHHHHHHHHHHHc
Confidence 57889999999999999887765 88999999999 9999999987654
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.015 Score=50.72 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=52.0
Q ss_pred CeEEEEcCCCChHHHHHHhhcC---CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC---CCCCeeEEEec
Q 042544 102 QKVLDVGCGIGGPLREIAQFSS---TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF---PDNSFDAVYAI 175 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v~~~ 175 (305)
.+|||+.||.|.++..+... + ..|.++|+++.+++..+.+.. ...++.+|+.++.. +...+|+|+..
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEc
Confidence 58999999999999999865 4 368999999999998888742 34577888887531 11258999874
Q ss_pred c
Q 042544 176 E 176 (305)
Q Consensus 176 ~ 176 (305)
.
T Consensus 76 p 76 (343)
T 1g55_A 76 P 76 (343)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.012 Score=50.47 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=61.8
Q ss_pred HHcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 94 LQLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
....+.++.+||=+|+| .|..+..+++..+++|++++ ++..++.+++. |.. .++ .|...+ .+.+|+|
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l----Ga~---~v~-~d~~~v---~~g~Dvv 203 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR----GVR---HLY-REPSQV---TQKYFAI 203 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH----TEE---EEE-SSGGGC---CSCEEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc----CCC---EEE-cCHHHh---CCCccEE
Confidence 45678899999999996 47788888866688999999 98888887663 321 222 242223 4679999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+-.-.-. .+..+.++|+++|.++..
T Consensus 204 ~d~~g~~------------------~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 204 FDAVNSQ------------------NAAALVPSLKANGHIICI 228 (315)
T ss_dssp ECC-------------------------TTGGGEEEEEEEEEE
T ss_pred EECCCch------------------hHHHHHHHhcCCCEEEEE
Confidence 8432111 134456788999998876
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.015 Score=50.84 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=65.3
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC-CCCC------CC
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF-MKMP------FP 165 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~------~~ 165 (305)
...++.++.+||-+|+|. |..+..+++..+++|+++|.++..++.+++ .|.. .++..+- .++. ..
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~~ 234 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIERIR 234 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHHhc
Confidence 456788999999999874 677777776568899999999998887764 2332 2222110 1110 01
Q ss_pred ---CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 ---DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ---~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+|+|+..-. ... .+....++|+++|.+++..
T Consensus 235 ~~~g~g~D~vid~~g-----~~~------------~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 235 SAIGDLPNVTIDCSG-----NEK------------CITIGINITRTGGTLMLVG 271 (352)
T ss_dssp HHSSSCCSEEEECSC-----CHH------------HHHHHHHHSCTTCEEEECS
T ss_pred cccCCCCCEEEECCC-----CHH------------HHHHHHHHHhcCCEEEEEe
Confidence 245898875321 111 3778889999999988753
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.027 Score=48.89 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=64.0
Q ss_pred HHcCCCCCCeEEEEcCC--CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CC
Q 042544 94 LQLGLKSGQKVLDVGCG--IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FP 165 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~ 165 (305)
....+.++.+||-+|+| .|..+..+++..+++|+++|.++..++.+++. |.. .++...-.++. ..
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----ga~---~~~~~~~~~~~~~~~~~~~ 210 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----GAA---YVIDTSTAPLYETVMELTN 210 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----CCc---EEEeCCcccHHHHHHHHhC
Confidence 35678899999999987 56777777765689999999999888877663 322 12211111110 12
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+|+|+.+-.- . ...+..+.|+++|.+++.-
T Consensus 211 ~~g~Dvvid~~g~-----~-------------~~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 211 GIGADAAIDSIGG-----P-------------DGNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp TSCEEEEEESSCH-----H-------------HHHHHHHTEEEEEEEEECC
T ss_pred CCCCcEEEECCCC-----h-------------hHHHHHHHhcCCCEEEEEe
Confidence 2469999754221 1 2344558899999988753
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.26 Score=43.45 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=36.1
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--------cCCeEEEEcCCHHHHHHHHHHH
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--------SSTSVTGLNNNEYQITRGKELN 143 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~gvD~s~~~l~~a~~~~ 143 (305)
.++.+..-.|+|+|.|+|.++..+.+. ...+++.||+|+...+.-++++
T Consensus 75 ~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L 131 (387)
T 1zkd_A 75 AADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 131 (387)
T ss_dssp HTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred HcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence 344445567999999999998887632 1248999999998877555544
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.068 Score=46.17 Aligned_cols=96 Identities=20% Similarity=0.286 Sum_probs=64.2
Q ss_pred cCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CCCC
Q 042544 96 LGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FPDN 167 (305)
Q Consensus 96 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~ 167 (305)
..+.++.+||-+|+ |.|..+..+++..+++|++++.++..++.+++ .|.. .++..+-.++. ....
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKFTNGK 216 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHTTTS
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHHhCCC
Confidence 46789999999994 45667777776568999999999998887765 2321 22222111110 1134
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+.+-.- . .+..+.+.|+++|.+++.-
T Consensus 217 g~D~vid~~g~-----~-------------~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 217 GVDASFDSVGK-----D-------------TFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp CEEEEEECCGG-----G-------------GHHHHHHHEEEEEEEEECC
T ss_pred CceEEEECCCh-----H-------------HHHHHHHHhccCCEEEEEc
Confidence 69999854321 1 4888899999999988753
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.088 Score=46.04 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=67.1
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCC--CC------C
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM--KM------P 163 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~--~~------~ 163 (305)
....+.++.+||=+|+|. |..+..+++..+++ |+++|.++..++.+++. . ..-+.+...+.. ++ .
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~~ 247 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVES 247 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHHH
Confidence 456788999999999874 77778888666776 99999999999988875 2 111222211110 00 0
Q ss_pred CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 164 FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 164 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.....+|+|+-.-. .+. .+..+.++|+++|.+++.-
T Consensus 248 t~g~g~Dvvid~~g-----~~~------------~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 248 FGGIEPAVALECTG-----VES------------SIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp TSSCCCSEEEECSC-----CHH------------HHHHHHHHSCTTCEEEECC
T ss_pred hCCCCCCEEEECCC-----ChH------------HHHHHHHHhcCCCEEEEEc
Confidence 12346899875321 111 4788899999999988753
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=94.92 E-value=0.055 Score=46.76 Aligned_cols=68 Identities=15% Similarity=0.070 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIE 176 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~ 176 (305)
+.++||+.||.|.++..+.......|.++|+++..++..+.+.... . ++|+.++... -..+|+|+...
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gp 79 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECC
Confidence 5799999999999999988652345778999999998888775321 1 5777764311 12489998754
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.054 Score=46.65 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=64.8
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CCC
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 166 (305)
...+.++.+||-+|+ |.|..+..+++..+++|++++.++..++.+++. |.. .++..+-.++. ...
T Consensus 135 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~~~~~~~~ 207 (325)
T 3jyn_A 135 TYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL----GAW---ETIDYSHEDVAKRVLELTDG 207 (325)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTTT
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEEeCCCccHHHHHHHHhCC
Confidence 356788999999983 457777777765689999999999988887653 321 22221111110 122
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+|+|+.+-.- . .+..+.+.|+++|.+++..
T Consensus 208 ~g~Dvvid~~g~-----~-------------~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 208 KKCPVVYDGVGQ-----D-------------TWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp CCEEEEEESSCG-----G-------------GHHHHHTTEEEEEEEEECC
T ss_pred CCceEEEECCCh-----H-------------HHHHHHHHhcCCCEEEEEe
Confidence 469998854321 1 4778889999999988754
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.038 Score=47.75 Aligned_cols=95 Identities=20% Similarity=0.290 Sum_probs=62.7
Q ss_pred HHcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC-------
Q 042544 94 LQLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP------- 163 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~------- 163 (305)
....+.++.+||-.|| |.|..+..++...+++|+++|.++..++.+++ .+.. .. .|..+ -.
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~---~~--~d~~~~~~~~~~~~~ 209 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGFD---AA--FNYKTVNSLEEALKK 209 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EE--EETTSCSCHHHHHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCc---EE--EecCCHHHHHHHHHH
Confidence 3457788999999998 46666666665558899999999988877733 2321 11 13222 11
Q ss_pred CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 164 FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 164 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
...+.+|+++.+-.- . .+....+.|+++|.+++.
T Consensus 210 ~~~~~~d~vi~~~g~-----~-------------~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 210 ASPDGYDCYFDNVGG-----E-------------FLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HCTTCEEEEEESSCH-----H-------------HHHHHHTTEEEEEEEEEC
T ss_pred HhCCCCeEEEECCCh-----H-------------HHHHHHHHHhcCCEEEEE
Confidence 112468998755321 1 367788899999988774
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.1 Score=45.15 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=63.6
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC------CC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP------DN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~------~~ 167 (305)
..++.++.+||-+|+| .|..+..+++..+++|+++|.++..++.+++ .|.. .+ .|..+..+. .+
T Consensus 159 ~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~--~d~~~~~~~~~~~~~~~ 229 (339)
T 1rjw_A 159 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---LV--VNPLKEDAAKFMKEKVG 229 (339)
T ss_dssp HHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EE--ECTTTSCHHHHHHHHHS
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---EE--ecCCCccHHHHHHHHhC
Confidence 3477889999999986 4667777776568899999999998887754 2321 11 233221110 03
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.+|+|+..-. ... .++...+.|+++|.+++.
T Consensus 230 ~~d~vid~~g-----~~~------------~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 230 GVHAAVVTAV-----SKP------------AFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp SEEEEEESSC-----CHH------------HHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCC-----CHH------------HHHHHHHHhhcCCEEEEe
Confidence 5898875422 111 478888999999988764
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.051 Score=47.18 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=65.4
Q ss_pred HHcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CC
Q 042544 94 LQLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FP 165 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~ 165 (305)
....+.++.+||-+|+ |.|..+..+++..+++|++++.++..++.+++. |.. .++..+ .++. ..
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~---~v~~~~-~~~~~~v~~~~~ 224 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GAD---IVLPLE-EGWAKAVREATG 224 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEESS-TTHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc---EEecCc-hhHHHHHHHHhC
Confidence 3457788999999997 457777778866689999999999888877663 322 222222 2110 12
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+|+|+.+-.- . .+..+.+.|+++|.+++..
T Consensus 225 ~~g~Dvvid~~g~-----~-------------~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 225 GAGVDMVVDPIGG-----P-------------AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp TSCEEEEEESCC--------------------CHHHHHHTEEEEEEEEEC-
T ss_pred CCCceEEEECCch-----h-------------HHHHHHHhhcCCCEEEEEE
Confidence 2369999854321 1 3778889999999988753
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.012 Score=51.17 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=62.6
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEE----cCC-CCCCCCCCC
Q 042544 97 GLKSGQKVLDVGCGI-GGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVK----ADF-MKMPFPDNS 168 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~-G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~----~d~-~~~~~~~~~ 168 (305)
.+ ++.+||-+|+|. |..+..+++.. +++|+++|.|+..++.+++. |.. .++. .|. ..+. ....
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~-~g~g 238 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GAD---YVSEMKDAESLINKLT-DGLG 238 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TCS---EEECHHHHHHHHHHHH-TTCC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CCC---EEeccccchHHHHHhh-cCCC
Confidence 67 899999999974 66777788666 89999999999998887653 322 1221 111 0111 1236
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|+|+-.-. ... .++.+.+.|+++|.+++.
T Consensus 239 ~D~vid~~g-----~~~------------~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 239 ASIAIDLVG-----TEE------------TTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEEESSC-----CHH------------HHHHHHHHEEEEEEEEEC
T ss_pred ccEEEECCC-----ChH------------HHHHHHHHhhcCCEEEEe
Confidence 899985422 111 478889999999988774
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.044 Score=47.41 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=64.2
Q ss_pred HHcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCC
Q 042544 94 LQLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPD 166 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~ 166 (305)
....+.++.+||-+|+ |.|..+..+++..+++|++++.++..++.+.+. .|.. .++...-.++ ....
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~~~~~~ 216 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LGFD---GAIDYKNEDLAAGLKRECP 216 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TCCS---EEEETTTSCHHHHHHHHCT
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCC---EEEECCCHHHHHHHHHhcC
Confidence 4567889999999998 456777777765688999999999888776322 2321 1221111110 0112
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+.+|+|+.+-.- . .+..+.+.|+++|.+++.
T Consensus 217 ~~~d~vi~~~g~-----~-------------~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 217 KGIDVFFDNVGG-----E-------------ILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp TCEEEEEESSCH-----H-------------HHHHHHTTEEEEEEEEEC
T ss_pred CCceEEEECCCc-----c-------------hHHHHHHHHhhCCEEEEE
Confidence 469998754321 1 377888999999998875
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.15 Score=44.26 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=64.5
Q ss_pred cCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------CC
Q 042544 96 LGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------FP 165 (305)
Q Consensus 96 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~ 165 (305)
.++.++.+||-+|+ |.|..+..++...+++|+++|.++..++.+++. |.. .++ |..+.. ..
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----ga~---~~~--d~~~~~~~~~~~~~~~ 232 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL----GAD---ETV--NYTHPDWPKEVRRLTG 232 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTSTTHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CCC---EEE--cCCcccHHHHHHHHhC
Confidence 46788999999998 567778888765688999999999988877642 321 122 222111 11
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+|+|+..-. . . .+..+.+.|+++|.+++..
T Consensus 233 ~~~~d~vi~~~g-~---~--------------~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 233 GKGADKVVDHTG-A---L--------------YFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp TTCEEEEEESSC-S---S--------------SHHHHHHHEEEEEEEEESS
T ss_pred CCCceEEEECCC-H---H--------------HHHHHHHhhccCCEEEEEe
Confidence 246899885432 1 1 4788899999999877643
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.46 E-value=0.015 Score=51.24 Aligned_cols=97 Identities=16% Similarity=0.241 Sum_probs=63.4
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC--CCC-----CCC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF--MKM-----PFP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~~~ 165 (305)
...+.++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++ .|.. .++..+- .++ ...
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~ 258 (374)
T 2jhf_A 186 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEMS 258 (374)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHT
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHHh
Confidence 45778899999999874 6677777765577 89999999998887754 2332 1221110 010 011
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEE
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIW 215 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~ 215 (305)
.+.+|+|+-.-. ... .+....++|+++ |.+++.
T Consensus 259 ~~g~D~vid~~g-----~~~------------~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 259 NGGVDFSFEVIG-----RLD------------TMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp TSCBSEEEECSC-----CHH------------HHHHHHHHBCTTTCEEEEC
T ss_pred CCCCcEEEECCC-----CHH------------HHHHHHHHhhcCCcEEEEe
Confidence 236898874321 111 478889999999 988764
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.0088 Score=52.87 Aligned_cols=99 Identities=21% Similarity=0.317 Sum_probs=65.0
Q ss_pred HHcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC--CCCC-----CC
Q 042544 94 LQLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD--FMKM-----PF 164 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d--~~~~-----~~ 164 (305)
....+.++.+||=+|+| .|..+..+++..++ +|+++|.++..++.+++ .|.. .++... -.++ ..
T Consensus 187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~ 259 (378)
T 3uko_A 187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---EFVNPKDHDKPIQEVIVDL 259 (378)
T ss_dssp TTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---EEECGGGCSSCHHHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---EEEccccCchhHHHHHHHh
Confidence 44677889999999987 37777778865577 89999999998887764 3332 222111 0110 01
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
.++.+|+|+-.- ..+. .+..+.+.|++| |.+++.-
T Consensus 260 ~~gg~D~vid~~-----g~~~------------~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 260 TDGGVDYSFECI-----GNVS------------VMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp TTSCBSEEEECS-----CCHH------------HHHHHHHTBCTTTCEEEECS
T ss_pred cCCCCCEEEECC-----CCHH------------HHHHHHHHhhccCCEEEEEc
Confidence 123689987532 1211 478889999997 9887753
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.06 Score=46.71 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=63.5
Q ss_pred HHcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CC------
Q 042544 94 LQLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PF------ 164 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~------ 164 (305)
....+.++.+||-+|| |.|..+..++...+++|++++.++..++.+++. .|.. .++ |..+. .+
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~~---~~~--d~~~~~~~~~~~~~ 220 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGFD---DAF--NYKEESDLTAALKR 220 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCCS---EEE--ETTSCSCSHHHHHH
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCc---eEE--ecCCHHHHHHHHHH
Confidence 3457788999999997 466777777765588999999999888776532 2321 122 22211 11
Q ss_pred -CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 165 -PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 165 -~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..+.+|+|+.+-. .. .+....+.|+++|.+++.
T Consensus 221 ~~~~~~d~vi~~~g-----~~-------------~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 221 CFPNGIDIYFENVG-----GK-------------MLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HCTTCEEEEEESSC-----HH-------------HHHHHHTTEEEEEEEEEC
T ss_pred HhCCCCcEEEECCC-----HH-------------HHHHHHHHHhcCCEEEEE
Confidence 1246899875432 11 377888899999988774
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.015 Score=51.23 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=64.3
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC--CCC-----CC
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF--MKM-----PF 164 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~~ 164 (305)
...++.++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++. |.. .++...- .++ ..
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~v~~~ 256 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLIEM 256 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEeccccccccHHHHHHHH
Confidence 345778899999999864 6677777765577 899999999988887653 332 1221110 010 01
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
..+.+|+|+-.-. ... .+..+.+.|+++ |.+++.-
T Consensus 257 ~~~g~D~vid~~g-----~~~------------~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 257 TDGGVDYSFECIG-----NVK------------VMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp TTSCBSEEEECSC-----CHH------------HHHHHHHTBCTTTCEEEECS
T ss_pred hCCCCCEEEECCC-----cHH------------HHHHHHHhhccCCcEEEEEe
Confidence 1236898874321 111 478889999999 9887743
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.14 Score=44.69 Aligned_cols=97 Identities=21% Similarity=0.194 Sum_probs=64.7
Q ss_pred HcCCCCCCeEEEEc--CCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCCC
Q 042544 95 QLGLKSGQKVLDVG--CGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiG--cG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~ 167 (305)
...+.++.+||-+| .|.|..+..+++..+++|++++.++..++.+++ .|.. .++..+-.++ .....
T Consensus 158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~~~ 230 (362)
T 2c0c_A 158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQEYPE 230 (362)
T ss_dssp HTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHCTT
T ss_pred hcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHhcCC
Confidence 45778999999999 357778888886568899999999988877765 2322 1222111110 00124
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+.+-. .. .++.+.++|+++|.+++..
T Consensus 231 g~D~vid~~g-----~~-------------~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 231 GVDVVYESVG-----GA-------------MFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp CEEEEEECSC-----TH-------------HHHHHHHHEEEEEEEEECC
T ss_pred CCCEEEECCC-----HH-------------HHHHHHHHHhcCCEEEEEe
Confidence 6899885432 11 4788899999999887743
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.31 Score=43.29 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=62.2
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CCCCC
Q 042544 97 GLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FPDNS 168 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~ 168 (305)
.+.++.+||=+|+|. |..+..+++..++ +|+++|.++..++.+++. |.. .++..+-.++. .....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHHhCCCC
Confidence 578899999999863 6677777765677 999999999999888764 322 22211111110 11236
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHH----HhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEAL----KQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L----~~gG~~~i~~ 216 (305)
+|+|+-.- ..... .+..+.+.| +++|.+++.-
T Consensus 283 ~D~vid~~-----g~~~~-----------~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 283 AKLFLEAT-----GVPQL-----------VWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp CSEEEECS-----SCHHH-----------HHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCEEEECC-----CCcHH-----------HHHHHHHHHHhccCCCcEEEEeC
Confidence 89887432 22211 356677777 9999988753
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.12 Score=45.05 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=63.0
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------C
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------F 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~ 164 (305)
..++.++.+||-.|+ |.|..+..++...+++|++++.++..++.+++ .+.. .++ |..+.. .
T Consensus 165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~--d~~~~~~~~~~~~~~ 235 (351)
T 1yb5_A 165 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVF--NHREVNYIDKIKKYV 235 (351)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEE--ETTSTTHHHHHHHHH
T ss_pred hhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH----cCCC---EEE--eCCCchHHHHHHHHc
Confidence 457788999999997 45666777775568999999999988876654 2321 122 222111 1
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+|+|+.+-.- . .+....++|+++|.+++..
T Consensus 236 ~~~~~D~vi~~~G~-----~-------------~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 236 GEKGIDIIIEMLAN-----V-------------NLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp CTTCEEEEEESCHH-----H-------------HHHHHHHHEEEEEEEEECC
T ss_pred CCCCcEEEEECCCh-----H-------------HHHHHHHhccCCCEEEEEe
Confidence 12368998754321 1 3677889999999987753
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.15 Score=44.31 Aligned_cols=96 Identities=21% Similarity=0.244 Sum_probs=63.2
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-------- 163 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-------- 163 (305)
...++ ++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++. |.. .++ |..+..
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~---~~~--~~~~~~~~~~v~~~ 231 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD---YVI--NPFEEDVVKEVMDI 231 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS---EEE--CTTTSCHHHHHHHH
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEE--CCCCcCHHHHHHHH
Confidence 34567 899999999963 6677777765577 999999999988877653 321 122 221111
Q ss_pred CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 164 FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 164 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.....+|+|+..-. ... .+..+.+.|+++|.++...
T Consensus 232 ~~g~g~D~vid~~g-----~~~------------~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 232 TDGNGVDVFLEFSG-----APK------------ALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp TTTSCEEEEEECSC-----CHH------------HHHHHHHHEEEEEEEEECC
T ss_pred cCCCCCCEEEECCC-----CHH------------HHHHHHHHHhcCCEEEEEc
Confidence 11235899875422 111 4788899999999887753
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.17 Score=44.04 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=62.7
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------C
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------F 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~ 164 (305)
..++.++.+||-+|+ |.|..+..++...+++|+++|.++..++.+++. +.. ..+ |..+.. .
T Consensus 157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~--~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GAA---AGF--NYKKEDFSEATLKFT 227 (354)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHHT
T ss_pred hcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc---EEE--ecCChHHHHHHHHHh
Confidence 456788999999984 456666677755588999999999988877442 321 112 221111 1
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+|+|+.+-.- . .+....++|+++|.+++..
T Consensus 228 ~~~~~d~vi~~~G~-----~-------------~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 228 KGAGVNLILDCIGG-----S-------------YWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp TTSCEEEEEESSCG-----G-------------GHHHHHHHEEEEEEEEECC
T ss_pred cCCCceEEEECCCc-----h-------------HHHHHHHhccCCCEEEEEe
Confidence 12468998754321 1 3777889999999887753
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.077 Score=46.34 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=61.3
Q ss_pred cCCCCC------CeEEEEcCC-CChHH-HHHH-hhcCCe-EEEEcCCHH---HHHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 042544 96 LGLKSG------QKVLDVGCG-IGGPL-REIA-QFSSTS-VTGLNNNEY---QITRGKELNRFAGVDKTCNFVKADFMKM 162 (305)
Q Consensus 96 ~~~~~~------~~vLDiGcG-~G~~~-~~l~-~~~~~~-v~gvD~s~~---~l~~a~~~~~~~~~~~~~~~~~~d~~~~ 162 (305)
..+.++ .+||-+|+| .|..+ ..++ +..+++ |+++|.++. .++.+++ .|. +.+ |..+-
T Consensus 162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa----~~v--~~~~~ 231 (357)
T 2b5w_A 162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA----TYV--DSRQT 231 (357)
T ss_dssp HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC----EEE--ETTTS
T ss_pred cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC----ccc--CCCcc
Confidence 445677 899999985 36677 7777 666776 999999987 7777654 232 222 33221
Q ss_pred CCC-----CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 163 PFP-----DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 163 ~~~-----~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+. .+.+|+|+-.-. ... .+..+.++|+++|.++..-
T Consensus 232 ~~~~i~~~~gg~Dvvid~~g-----~~~------------~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 232 PVEDVPDVYEQMDFIYEATG-----FPK------------HAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp CGGGHHHHSCCEEEEEECSC-----CHH------------HHHHHHHHEEEEEEEEECC
T ss_pred CHHHHHHhCCCCCEEEECCC-----ChH------------HHHHHHHHHhcCCEEEEEe
Confidence 111 136898874321 111 4788899999999887743
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.17 Score=43.47 Aligned_cols=95 Identities=14% Similarity=0.207 Sum_probs=63.1
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------C
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------F 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~ 164 (305)
..++.++.+||-.|+ |.|..+..++...+++|+++|.++..++.+++. +.. .++ |..+.. .
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g~~---~~~--~~~~~~~~~~~~~~~ 205 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVI--NYREEDLVERLKEIT 205 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHHT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEE--ECCCccHHHHHHHHh
Confidence 457788999999994 456666666654588999999999888877652 321 122 222111 1
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+|+|+.+-. . . .++.+.++|+++|.+++..
T Consensus 206 ~~~~~D~vi~~~g------~-~-----------~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 206 GGKKVRVVYDSVG------R-D-----------TWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp TTCCEEEEEECSC------G-G-----------GHHHHHHTEEEEEEEEECC
T ss_pred CCCCceEEEECCc------h-H-----------HHHHHHHHhcCCCEEEEEe
Confidence 1236899886532 1 1 4888899999999887653
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.078 Score=45.15 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCCChHHHHHH----h-hcCC--eEEEEcCCH--------H-HHHHHHHHHHhc----CCCCCeEEEEcCC
Q 042544 100 SGQKVLDVGCGIGGPLREIA----Q-FSST--SVTGLNNNE--------Y-QITRGKELNRFA----GVDKTCNFVKADF 159 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~----~-~~~~--~v~gvD~s~--------~-~l~~a~~~~~~~----~~~~~~~~~~~d~ 159 (305)
+.-+|||+|-|||..+.... + .+.. +++.+|..+ . .-+..+...... +..-.+++..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 34689999999998654322 1 2344 455666321 1 111222222221 1111346788888
Q ss_pred CC-CC-CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 160 MK-MP-FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 160 ~~-~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
.+ ++ +++..||+++.-. +.--.+|+ +....+++.++++++|||.+.-
T Consensus 176 ~~~l~~l~~~~~Da~flDg-FsP~kNPe-------LWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDA-FSPYKNPE-------LWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp HHHGGGCCSCCEEEEEECC-SCTTTSGG-------GGSHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHhhhcccceeEEEeCC-CCcccCcc-------cCCHHHHHHHHHHhCCCcEEEE
Confidence 65 33 4455799998643 21111221 1122357778888888876654
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.042 Score=47.28 Aligned_cols=96 Identities=17% Similarity=0.274 Sum_probs=62.1
Q ss_pred cCCCCCC-eEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEE-cCCCC-CCCCCCCee
Q 042544 96 LGLKSGQ-KVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVK-ADFMK-MPFPDNSFD 170 (305)
Q Consensus 96 ~~~~~~~-~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~-~~~~~~~fD 170 (305)
+++.++. +||=+|+ |.|..+..+++..+++|++++.++..++.+++. |.. .++. .+... .....+.+|
T Consensus 141 ~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~~d 213 (324)
T 3nx4_A 141 AGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL----GAN---RILSRDEFAESRPLEKQLWA 213 (324)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TCS---EEEEGGGSSCCCSSCCCCEE
T ss_pred cccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC---EEEecCCHHHHHhhcCCCcc
Confidence 4455422 4998987 467788888876689999999999988888663 322 1111 11111 112235689
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+-.- ... .+..+.++|+++|.+++.-
T Consensus 214 ~v~d~~-----g~~-------------~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 214 GAIDTV-----GDK-------------VLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp EEEESS-----CHH-------------HHHHHHHTEEEEEEEEECC
T ss_pred EEEECC-----CcH-------------HHHHHHHHHhcCCEEEEEe
Confidence 887432 111 3788899999999988753
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.45 Score=40.35 Aligned_cols=71 Identities=18% Similarity=0.092 Sum_probs=52.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCe---EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC----CCCeeE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTS---VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP----DNSFDA 171 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~fD~ 171 (305)
....+++|+-||.|.++..+... +.+ |.++|+++...+.-+.+. +...++.+|+.++... .+.+|+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~------~~~~~~~~DI~~i~~~~i~~~~~~Dl 86 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH------QGKIMYVGDVRSVTQKHIQEWGPFDL 86 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT------TTCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC------CCCceeCCChHHccHHHhcccCCcCE
Confidence 45679999999999999888764 443 589999999887666553 1346788999876421 135899
Q ss_pred EEecc
Q 042544 172 VYAIE 176 (305)
Q Consensus 172 v~~~~ 176 (305)
++...
T Consensus 87 l~ggp 91 (295)
T 2qrv_A 87 VIGGS 91 (295)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99754
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.013 Score=51.36 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=63.8
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CCCC
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 167 (305)
...+.++.+||-+|+ |.|..+..+++..+++|+++|.++..++.+++. |.. .++..+-.++. ....
T Consensus 162 ~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~~~~~~~~~~~~~~~~~~~ 234 (353)
T 4dup_A 162 MAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----GAK---RGINYRSEDFAAVIKAETGQ 234 (353)
T ss_dssp TTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHHSS
T ss_pred hcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC---EEEeCCchHHHHHHHHHhCC
Confidence 457789999999853 356777777766689999999999998887663 322 12221111100 0024
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+.+-.- . .+....+.|+++|.+++..
T Consensus 235 g~Dvvid~~g~-----~-------------~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 235 GVDIILDMIGA-----A-------------YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp CEEEEEESCCG-----G-------------GHHHHHHTEEEEEEEEECC
T ss_pred CceEEEECCCH-----H-------------HHHHHHHHhccCCEEEEEE
Confidence 68998854321 1 3778889999999887743
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.28 Score=42.17 Aligned_cols=95 Identities=20% Similarity=0.328 Sum_probs=63.6
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------C
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------F 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~ 164 (305)
...+.++.+||-.|+ |.|..+..++...+++|+++|.++..++.+++. +.. ..+ |..+.. .
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g~~---~~~--d~~~~~~~~~i~~~~ 210 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----GCH---HTI--NYSTQDFAEVVREIT 210 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEE--ECCCHHHHHHHHHHh
Confidence 457788999999995 567777777755588999999999888777552 321 122 222111 1
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+|+|+.+-.- . .++.+.++|+++|.++...
T Consensus 211 ~~~~~d~vi~~~g~-------~-----------~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 211 GGKGVDVVYDSIGK-------D-----------TLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp TTCCEEEEEECSCT-------T-----------THHHHHHTEEEEEEEEECC
T ss_pred CCCCCeEEEECCcH-------H-----------HHHHHHHhhccCCEEEEEe
Confidence 12358988854321 1 4788899999999887653
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.14 Score=44.18 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcC---CeE-EEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC---CCCCeeEE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSS---TSV-TGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF---PDNSFDAV 172 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~---~~v-~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v 172 (305)
...+++|+-||.|.++..+... + ..| .++|+++...+..+.+... . ++++|+.++.. +...+|++
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~-----~--~~~~DI~~~~~~~i~~~~~Dil 80 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKE-----E--VQVKNLDSISIKQIESLNCNTW 80 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCC-----C--CBCCCTTTCCHHHHHHTCCCEE
T ss_pred CCCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCC-----C--cccCChhhcCHHHhccCCCCEE
Confidence 3468999999999999998764 4 345 6999999998887776521 1 56778877642 22358999
Q ss_pred Eeccc
Q 042544 173 YAIEA 177 (305)
Q Consensus 173 ~~~~~ 177 (305)
+...-
T Consensus 81 ~ggpP 85 (327)
T 3qv2_A 81 FMSPP 85 (327)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 87543
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.23 Score=43.08 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=59.3
Q ss_pred CCCeEEEEc-CC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCCCCeeEE
Q 042544 100 SGQKVLDVG-CG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPDNSFDAV 172 (305)
Q Consensus 100 ~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v 172 (305)
++.+||=+| +| .|..+..+++..+++|++++.++..++.+++. |.. .++..+ .++ ......+|+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~-~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM----GAD---IVLNHK-ESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH----TCS---EEECTT-SCHHHHHHHHTCCCEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc---EEEECC-ccHHHHHHHhCCCCccEE
Confidence 789999884 44 56677777766689999999999988887763 322 122111 110 0122468988
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+.+-. .. . .+..+.++|+++|.++..
T Consensus 222 ~d~~g-----~~-~-----------~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 222 FCTFN-----TD-M-----------YYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EESSC-----HH-H-----------HHHHHHHHEEEEEEEEES
T ss_pred EECCC-----ch-H-----------HHHHHHHHhccCCEEEEE
Confidence 85321 11 1 368888999999998753
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.16 Score=44.48 Aligned_cols=86 Identities=21% Similarity=0.188 Sum_probs=56.3
Q ss_pred CCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCH---HHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC------CCCee
Q 042544 101 GQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNE---YQITRGKELNRFAGVDKTCNFVKADFMKMPFP------DNSFD 170 (305)
Q Consensus 101 ~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~---~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~------~~~fD 170 (305)
+.+||-+|+| .|..+..+++..+++|+++|.++ ..++.+++. |. +.+ | .+ .+. .+.+|
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~----ga----~~v--~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET----KT----NYY--N-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH----TC----EEE--E-CT-TCSHHHHHHHCCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh----CC----cee--c-hH-HHHHHHHHhCCCCC
Confidence 8999999984 25566666655588999999998 777766542 32 222 3 22 211 14589
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccH-HHHHHHHHhCCceEEE
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRST-RKCLEALKQAGFEVIW 215 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~~L~~gG~~~i~ 215 (305)
+|+..-.. .. .+ +.+.+.|+++|.+++.
T Consensus 249 ~vid~~g~-----~~------------~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 249 VIIDATGA-----DV------------NILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEECCCC-----CT------------HHHHHHGGGEEEEEEEEEC
T ss_pred EEEECCCC-----hH------------HHHHHHHHHHhcCCEEEEE
Confidence 98754321 11 35 7788899999988774
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.71 E-value=0.067 Score=46.06 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=60.9
Q ss_pred cCCCCCC-eEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCCeeE
Q 042544 96 LGLKSGQ-KVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNSFDA 171 (305)
Q Consensus 96 ~~~~~~~-~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~ 171 (305)
.++.++. +||-+|+ |.|..+..+++..+++|++++.++..++.+++ .|...-+.....+... .....+.+|+
T Consensus 144 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~d~ 219 (328)
T 1xa0_A 144 HGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLDKQRWAA 219 (328)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCSEEEECC---------CCSCCEEE
T ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCcEEEecCCcHHHHHHHhcCCcccE
Confidence 4677775 8999997 46777788886668899999999887777754 3332111111110000 0122346898
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+-.-. .. .+....+.|+++|.+++.
T Consensus 220 vid~~g-----~~-------------~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 220 AVDPVG-----GR-------------TLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp EEECST-----TT-------------THHHHHHTEEEEEEEEEC
T ss_pred EEECCc-----HH-------------HHHHHHHhhccCCEEEEE
Confidence 874321 11 377888999999998774
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.011 Score=51.44 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=60.5
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-------C
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF-------P 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~ 165 (305)
..++ ++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++. . -.++ |..+..+ .
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-------~~v~--~~~~~~~~~~~~~~~ 228 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-------DRLV--NPLEEDLLEVVRRVT 228 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-------SEEE--CTTTSCHHHHHHHHH
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-------Hhcc--CcCccCHHHHHHHhc
Confidence 4567 899999999853 6677777765677 999999999887765442 1 1111 2211110 0
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
...+|+|+..-. ... .++...+.|+++|.+++.
T Consensus 229 ~~g~D~vid~~g-----~~~------------~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 229 GSGVEVLLEFSG-----NEA------------AIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SSCEEEEEECSC-----CHH------------HHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCC-----CHH------------HHHHHHHHHhcCCEEEEE
Confidence 235898875322 111 478889999999987764
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.23 Score=43.47 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=63.5
Q ss_pred HcCCC-----CCCeEEEEc-CC-CChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----
Q 042544 95 QLGLK-----SGQKVLDVG-CG-IGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM---- 162 (305)
Q Consensus 95 ~~~~~-----~~~~vLDiG-cG-~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~---- 162 (305)
...+. ++.+||=+| +| .|..+..+++. .+++|+++|.++..++.+++ .|.. .++... .++
T Consensus 161 ~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~-~~~~~~v 232 (363)
T 4dvj_A 161 RLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVIDHS-KPLAAEV 232 (363)
T ss_dssp TSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEECTT-SCHHHHH
T ss_pred hhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCC-CCHHHHH
Confidence 44565 788999998 44 57788888865 58899999999998888765 3322 122111 110
Q ss_pred -CCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 163 -PFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 163 -~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
....+.+|+|+-.-. ... .+..+.++|+++|.+++.
T Consensus 233 ~~~~~~g~Dvvid~~g-----~~~------------~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 233 AALGLGAPAFVFSTTH-----TDK------------HAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp HTTCSCCEEEEEECSC-----HHH------------HHHHHHHHSCTTCEEEEC
T ss_pred HHhcCCCceEEEECCC-----chh------------hHHHHHHHhcCCCEEEEE
Confidence 122357898875321 111 478889999999998875
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.21 Score=43.21 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=49.6
Q ss_pred CeEEEEcCCCChHHHHHHhhcC---CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCeeEEEec
Q 042544 102 QKVLDVGCGIGGPLREIAQFSS---TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSFDAVYAI 175 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~ 175 (305)
.+++|+-||.|.++..+... + ..|.++|+++...+.-+.+.. ...++.+|+.++. ++...+|+++..
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~gg 76 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTILMS 76 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEEec
Confidence 48999999999999998764 4 357799999999887776642 2456778887754 222358999864
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.31 Score=42.03 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=65.9
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--C--CCCC
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--F--PDNS 168 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~--~~~~ 168 (305)
....+.++.+||-+|+|. |..+..+++..+++|+++|.++..++.+++ .|.. .++..+-.++. . ..+.
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~g~ 232 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGAE---VAVNARDTDPAAWLQKEIGG 232 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSS
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHhCCC
Confidence 345778999999999975 888888887668999999999999887765 2322 22221111100 0 0135
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|+|+.... ... .++.+.+.|+++|.+++.
T Consensus 233 ~d~vid~~g-----~~~------------~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 233 AHGVLVTAV-----SPK------------AFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EEEEEESSC-----CHH------------HHHHHHHHEEEEEEEEEC
T ss_pred CCEEEEeCC-----CHH------------HHHHHHHHhccCCEEEEe
Confidence 888874321 111 488899999999998874
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=92.49 E-value=0.31 Score=44.00 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=38.0
Q ss_pred cCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 96 LGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 96 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
..+.++.+||=+|+ |.|..+..+++..+++|++++.++..++.+++
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~ 271 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRA 271 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHh
Confidence 56789999999997 35677778886668999999999998888765
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=92.48 E-value=0.025 Score=48.21 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=60.5
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC-CCC--CCCCCCeeEE
Q 042544 98 LKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF-MKM--PFPDNSFDAV 172 (305)
Q Consensus 98 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~--~~~~~~fD~v 172 (305)
+.++.+||-+|+ |.|..+..+++..+++|++++.++..++.+++ .|.. .++..+- .++ .. +.+|+|
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~--~~~d~v 193 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW--GGLDLV 193 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT--TSEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh--cCceEE
Confidence 788999999998 45777777776568899999999988877654 2322 1221110 110 01 468998
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+. -. .. .+....++|+++|.++..
T Consensus 194 id-~g-----~~-------------~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 194 LE-VR-----GK-------------EVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp EE-CS-----CT-------------THHHHHTTEEEEEEEEEC
T ss_pred EE-CC-----HH-------------HHHHHHHhhccCCEEEEE
Confidence 75 21 11 478888999999988764
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=1.1 Score=40.11 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=35.3
Q ss_pred CCeEEEEcCCCChHHHHHHhhc------CCeEEEEcCCHHHHHHHHHHHHh
Q 042544 101 GQKVLDVGCGIGGPLREIAQFS------STSVTGLNNNEYQITRGKELNRF 145 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~------~~~v~gvD~s~~~l~~a~~~~~~ 145 (305)
..+|+|+|.|+|.++..+.+.. ..+++.||+|+...+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 3699999999999988876421 24899999999888776666653
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.15 Score=44.68 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=60.1
Q ss_pred HcCCC-CCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC-CCCC-CCCCCCee
Q 042544 95 QLGLK-SGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD-FMKM-PFPDNSFD 170 (305)
Q Consensus 95 ~~~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d-~~~~-~~~~~~fD 170 (305)
...+. ++.+||=+|+|. |..+..+++..+++|++++.++..++.+.+. .|.. .++..+ ...+ .. .+.+|
T Consensus 181 ~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---lGa~---~v~~~~~~~~~~~~-~~~~D 253 (366)
T 1yqd_A 181 YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN---FGAD---SFLVSRDQEQMQAA-AGTLD 253 (366)
T ss_dssp HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT---SCCS---EEEETTCHHHHHHT-TTCEE
T ss_pred hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cCCc---eEEeccCHHHHHHh-hCCCC
Confidence 35667 899999999763 5566667765688999999998877765532 2321 122111 0000 01 13689
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|+..-.. .. .++...+.|+++|.++..
T Consensus 254 ~vid~~g~-----~~------------~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 254 GIIDTVSA-----VH------------PLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp EEEECCSS-----CC------------CSHHHHHHEEEEEEEEEC
T ss_pred EEEECCCc-----HH------------HHHHHHHHHhcCCEEEEE
Confidence 98754221 10 356778899999987764
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.17 Score=43.81 Aligned_cols=94 Identities=21% Similarity=0.230 Sum_probs=63.1
Q ss_pred HHcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CC
Q 042544 94 LQLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FP 165 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~ 165 (305)
....+.++.+||-+|+ |.|..+..+++..+++|+++ .++..++.+++. |.. .+. +-.++. ..
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----Ga~----~i~-~~~~~~~~~~~~~~ 213 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----GAT----PID-ASREPEDYAAEHTA 213 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----TSE----EEE-TTSCHHHHHHHHHT
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----CCC----Eec-cCCCHHHHHHHHhc
Confidence 3467788999999994 35777778886668999999 888888777653 322 222 211110 11
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
...+|+|+-+-. .. .+....+.|+++|.+++.
T Consensus 214 ~~g~D~vid~~g-----~~-------------~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 214 GQGFDLVYDTLG-----GP-------------VLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp TSCEEEEEESSC-----TH-------------HHHHHHHHEEEEEEEEES
T ss_pred CCCceEEEECCC-----cH-------------HHHHHHHHHhcCCeEEEE
Confidence 246999875322 11 478888999999998874
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=91.77 E-value=0.33 Score=42.22 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=65.4
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC---CCC----C-C
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD---FMK----M-P 163 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d---~~~----~-~ 163 (305)
...++.++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++ .|.. .++..+ ..+ + .
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~ 237 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEG 237 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHH
Confidence 456788999999999874 7778888865677 99999999998887765 2332 222211 000 0 0
Q ss_pred CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 164 FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 164 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.....+|+|+-.-. ... .+....++|+++|.+++.-
T Consensus 238 ~~~~g~D~vid~~g-----~~~------------~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 238 QLGCKPEVTIECTG-----AEA------------SIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp HHTSCCSEEEECSC-----CHH------------HHHHHHHHSCTTCEEEECS
T ss_pred HhCCCCCEEEECCC-----ChH------------HHHHHHHHhcCCCEEEEEe
Confidence 00145898874321 111 4778889999999988753
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.12 Score=45.02 Aligned_cols=97 Identities=25% Similarity=0.279 Sum_probs=60.4
Q ss_pred HcCCC-CCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCCC-CCCCCCee
Q 042544 95 QLGLK-SGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMKM-PFPDNSFD 170 (305)
Q Consensus 95 ~~~~~-~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~-~~~~~~fD 170 (305)
...+. ++.+||=+|+| .|..+..+++..+++|+++|.++..++.+++ ..|.. .++.. +...+ .. .+.+|
T Consensus 174 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~---~lGa~---~vi~~~~~~~~~~~-~~g~D 246 (357)
T 2cf5_A 174 HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQ---DLGAD---DYVIGSDQAKMSEL-ADSLD 246 (357)
T ss_dssp HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHT---TSCCS---CEEETTCHHHHHHS-TTTEE
T ss_pred hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH---HcCCc---eeeccccHHHHHHh-cCCCC
Confidence 35677 89999999986 3566667776568899999999887766652 23322 12211 10000 01 13589
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|+-.-. ... .+....++|+++|.++..
T Consensus 247 ~vid~~g-----~~~------------~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 247 YVIDTVP-----VHH------------ALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp EEEECCC-----SCC------------CSHHHHTTEEEEEEEEEC
T ss_pred EEEECCC-----ChH------------HHHHHHHHhccCCEEEEe
Confidence 8874321 110 366778899999998774
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.2 Score=43.42 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=60.4
Q ss_pred HHcCCCCCCeEEEEcCCCC-hHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-C-CCCCC
Q 042544 94 LQLGLKSGQKVLDVGCGIG-GPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-P-FPDNS 168 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~G-~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~ 168 (305)
....+.++.+||=+|+|.+ ..+..+++ ..+.+|+++|.++..++.+++. |...-+.....|..+ + . .....
T Consensus 157 ~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~~~i~~~~~~~~~~v~~~t~g~g 232 (348)
T 4eez_A 157 KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GADVTINSGDVNPVDEIKKITGGLG 232 (348)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCSEEEEC-CCCHHHHHHHHTTSSC
T ss_pred cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCeEEEeCCCCCHHHHhhhhcCCCC
Confidence 3557789999999999864 34444554 3578999999999988777653 322111111111111 0 0 11234
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|.++.... ... .+....+.|+++|.+++.
T Consensus 233 ~d~~~~~~~-----~~~------------~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 233 VQSAIVCAV-----ARI------------AFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp EEEEEECCS-----CHH------------HHHHHHHTEEEEEEEEEC
T ss_pred ceEEEEecc-----Ccc------------hhheeheeecCCceEEEE
Confidence 666553211 111 478888999999998774
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.085 Score=45.43 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=61.4
Q ss_pred cCCCCCC-eEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCCCCCeeE
Q 042544 96 LGLKSGQ-KVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFPDNSFDA 171 (305)
Q Consensus 96 ~~~~~~~-~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~ 171 (305)
.++.++. +||-+|+ |.|..+..+++..+++|++++.++..++.+++. |...-+.....+.... ....+.+|+
T Consensus 145 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~l----Ga~~v~~~~~~~~~~~~~~~~~~~d~ 220 (330)
T 1tt7_A 145 NGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GASEVISREDVYDGTLKALSKQQWQG 220 (330)
T ss_dssp TTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCSEEEEHHHHCSSCCCSSCCCCEEE
T ss_pred cCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCcEEEECCCchHHHHHHhhcCCccE
Confidence 4667775 8999997 466777777765688999999998877777652 3221111101111111 122346898
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+..-. .. .+....+.|+++|.+++.
T Consensus 221 vid~~g-----~~-------------~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 221 AVDPVG-----GK-------------QLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp EEESCC-----TH-------------HHHHHHTTEEEEEEEEEC
T ss_pred EEECCc-----HH-------------HHHHHHHhhcCCCEEEEE
Confidence 875421 11 377788899999998774
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=0.55 Score=40.30 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=49.0
Q ss_pred CeEEEEcCCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecc
Q 042544 102 QKVLDVGCGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIE 176 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~ 176 (305)
++|||+-||.|.++.-+.+. +. .|.++|+++...+.-+.+. + -.++.+|+.++... -..+|+++...
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~ggp 69 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGP 69 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred CeEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEecC
Confidence 47999999999999888764 54 4569999998887766653 2 36788999876421 13579988643
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.11 E-value=1.2 Score=38.32 Aligned_cols=100 Identities=13% Similarity=0.040 Sum_probs=62.1
Q ss_pred HHHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------C
Q 042544 93 ALQLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------F 164 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~ 164 (305)
.....+.++.+||=.|+|. |..+..+++..++ .++++|.++..++.+++. |.. .++..+-.+.+ -
T Consensus 153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~ 225 (346)
T 4a2c_A 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----GAM---QTFNSSEMSAPQMQSVLR 225 (346)
T ss_dssp HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHHG
T ss_pred HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----CCe---EEEeCCCCCHHHHHHhhc
Confidence 3456778999999999874 4456666655454 568999999988887663 432 22222111100 0
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+|+|+..- ..+. .++...++|+++|.+++.-
T Consensus 226 ~~~g~d~v~d~~-----G~~~------------~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 226 ELRFNQLILETA-----GVPQ------------TVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp GGCSSEEEEECS-----CSHH------------HHHHHHHHCCTTCEEEECC
T ss_pred ccCCcccccccc-----cccc------------hhhhhhheecCCeEEEEEe
Confidence 123467776432 1111 4788889999999988743
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=90.06 E-value=0.32 Score=43.73 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=37.3
Q ss_pred cCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 96 LGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 96 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
..+.++.+||=+|+ |.|..+..+++..+++|++++.++..++.+++
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~ 263 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA 263 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 57789999999997 35667777776668999999999998887754
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.87 E-value=0.54 Score=40.18 Aligned_cols=96 Identities=20% Similarity=0.186 Sum_probs=60.2
Q ss_pred HHcCCCCCCeEEEEc-CC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCCee
Q 042544 94 LQLGLKSGQKVLDVG-CG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNSFD 170 (305)
Q Consensus 94 ~~~~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD 170 (305)
....+.++.+||=+| +| .|..+..+++..+++|++++ ++..++.+++ .|.. .++..+-.+ +.-.-..+|
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~g~D 217 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA----LGAE---QCINYHEEDFLLAISTPVD 217 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH----HTCS---EEEETTTSCHHHHCCSCEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH----cCCC---EEEeCCCcchhhhhccCCC
Confidence 567888999999886 44 57788888866689999997 5555665554 3432 222211111 100114589
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|+-.-. .. ......++|+++|.++..
T Consensus 218 ~v~d~~g-----~~-------------~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 218 AVIDLVG-----GD-------------VGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEESSC-----HH-------------HHHHHGGGEEEEEEEEEC
T ss_pred EEEECCC-----cH-------------HHHHHHHhccCCCEEEEe
Confidence 8875321 11 256778899999988764
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=0.33 Score=46.35 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhh--------cC-----CeEEEEcC---CHHHHHHHH-----------HHHHhcCC----
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF--------SS-----TSVTGLNN---NEYQITRGK-----------ELNRFAGV---- 148 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~--------~~-----~~v~gvD~---s~~~l~~a~-----------~~~~~~~~---- 148 (305)
+.-+|||+|.|+|...+...+. |. .+++.+|. +...+..+- +.+.....
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 4469999999999987776531 11 57899998 555555432 22222211
Q ss_pred ------C---CCeEEEEcCCCC-CC-CC---CCCeeEEEecc
Q 042544 149 ------D---KTCNFVKADFMK-MP-FP---DNSFDAVYAIE 176 (305)
Q Consensus 149 ------~---~~~~~~~~d~~~-~~-~~---~~~fD~v~~~~ 176 (305)
. -.+++..+|+.+ ++ +. +..+|+++.-.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~ 179 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDG 179 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECS
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECC
Confidence 1 145677888865 32 22 46799998743
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=88.86 E-value=0.61 Score=44.40 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhh--------c---C--CeEEEEcC---CHHHHHHH
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF--------S---S--TSVTGLNN---NEYQITRG 139 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~--------~---~--~~v~gvD~---s~~~l~~a 139 (305)
+.-+|||+|.|||...+...+. | . .+++++|. +++.+..+
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~ 121 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALA 121 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHH
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHH
Confidence 3458999999999977765421 1 1 46899998 77777643
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.60 E-value=2.1 Score=31.34 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=43.7
Q ss_pred CCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CCCCCeeEEE
Q 042544 101 GQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FPDNSFDAVY 173 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~v~ 173 (305)
..+|+=+||| .++..+++ ..+.+|+++|.++..++.+++ ..+.++.+|..+.. ..-..+|+|+
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED--------EGFDAVIADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--------CCCcEEECCCCCHHHHHhCCcccCCEEE
Confidence 4578889985 46665553 237899999999988776654 13678888887521 1224578887
Q ss_pred ec
Q 042544 174 AI 175 (305)
Q Consensus 174 ~~ 175 (305)
..
T Consensus 76 ~~ 77 (141)
T 3llv_A 76 IT 77 (141)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.45 E-value=0.58 Score=40.93 Aligned_cols=97 Identities=15% Similarity=0.220 Sum_probs=63.3
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC--CCC-----CCC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF--MKM-----PFP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~~~ 165 (305)
...+.++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++ .|.. .++..+- .++ ...
T Consensus 187 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~ 259 (374)
T 1cdo_A 187 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKMT 259 (374)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHHH
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHHh
Confidence 45778899999999864 6677777765677 89999999998887764 2332 1221110 010 011
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEE
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIW 215 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~ 215 (305)
.+.+|+|+-.-. ... .+..+.++|+++ |.+++.
T Consensus 260 ~~g~D~vid~~g-----~~~------------~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 260 NGGVDFSLECVG-----NVG------------VMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp TSCBSEEEECSC-----CHH------------HHHHHHHTBCTTTCEEEEC
T ss_pred CCCCCEEEECCC-----CHH------------HHHHHHHHhhcCCcEEEEE
Confidence 136898874321 111 478889999999 988774
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=88.38 E-value=0.55 Score=41.08 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=64.3
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC--CCC-----CC
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF--MKM-----PF 164 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~~ 164 (305)
....+.++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++ .|.. .++..+- .++ ..
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~ 257 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICEK 257 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHHHH
Confidence 345778999999999874 6677777765577 89999999988887764 3332 2221110 010 01
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
..+.+|+|+-.-. ... .+..+.++|+++ |.+++.-
T Consensus 258 t~gg~Dvvid~~g-----~~~------------~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 258 TNGGVDYAVECAG-----RIE------------TMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp TTSCBSEEEECSC-----CHH------------HHHHHHHTBCTTTCEEEECC
T ss_pred hCCCCCEEEECCC-----CHH------------HHHHHHHHHhcCCCEEEEEc
Confidence 1236899874321 111 478888999999 9887643
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=88.26 E-value=0.8 Score=41.62 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=42.6
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM 162 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~ 162 (305)
..+++|+-||.|.++..+... +. .|.++|+++...+.-+.+.. ..+...++.+|+.++
T Consensus 88 ~~~viDLFaG~GGlslG~~~a-G~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i 146 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI-GGQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDI 146 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT-TEEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHH
T ss_pred cceEEEecCCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhh
Confidence 468999999999999998764 44 47899999988876665531 112356777888754
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=88.05 E-value=1.6 Score=33.00 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNN 131 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~ 131 (305)
..++......--+| -|||+|-|+|..--++.+ .|+.+|+++|-
T Consensus 29 ~L~~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR 72 (174)
T 3iht_A 29 CLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFER 72 (174)
T ss_dssp HHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred HHHHHHHHhcCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence 34444444443344 699999999999999995 57899999996
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=87.84 E-value=7.2 Score=33.50 Aligned_cols=107 Identities=9% Similarity=0.089 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcC----------------------CCCCeEEE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAG----------------------VDKTCNFV 155 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~----------------------~~~~~~~~ 155 (305)
+...|+-+|||.=.....+... ++.+++=||. |..++.=++.+...+ ...+.+++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4568999999987777776642 3567888887 555554333333210 13567899
Q ss_pred EcCCCCC----------CCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 156 KADFMKM----------PFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 156 ~~d~~~~----------~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
..|+.+. .+..+..-++++-.++.+++...... +++.+.+.. |+|.+++.+.
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~---------ll~~ia~~f-~~~~~i~yE~ 230 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSAN---------LLKWAANSF-ERAMFINYEQ 230 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHH---------HHHHHHHHC-SSEEEEEEEE
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHH---------HHHHHHHhC-CCceEEEEec
Confidence 9999762 13445566888888999998876543 455555554 5565555553
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=87.72 E-value=0.69 Score=40.48 Aligned_cols=98 Identities=10% Similarity=0.136 Sum_probs=63.5
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC--CCC-----CCC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF--MKM-----PFP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~~~ 165 (305)
...+.++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++ .|.. .++..+- .++ ...
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~v~~~~ 262 (376)
T 1e3i_A 190 TAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVITELT 262 (376)
T ss_dssp TSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---EEEccccccchHHHHHHHHh
Confidence 45778899999999873 6677777765677 89999999988887764 2332 1221110 010 001
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
.+.+|+|+-.-. ... .+..+.+.|+++ |.+++.-
T Consensus 263 ~~g~Dvvid~~G-----~~~------------~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 263 AGGVDYSLDCAG-----TAQ------------TLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp TSCBSEEEESSC-----CHH------------HHHHHHHTBCTTTCEEEECC
T ss_pred CCCccEEEECCC-----CHH------------HHHHHHHHhhcCCCEEEEEC
Confidence 136898874321 111 478889999999 9887743
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=87.36 E-value=0.39 Score=41.81 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=55.1
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEc-CCHH---HHHHHHHHHHhcCCCCCeEEEEc------CCCCC
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLN-NNEY---QITRGKELNRFAGVDKTCNFVKA------DFMKM 162 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD-~s~~---~l~~a~~~~~~~~~~~~~~~~~~------d~~~~ 162 (305)
...+.++.+||=+|+ |.|..+..+++..+++++++. .++. .++.++ ..|.. .++.. ++.+.
T Consensus 162 ~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~~~ 234 (357)
T 1zsy_A 162 FEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAE---HVITEEELRRPEMKNF 234 (357)
T ss_dssp SSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCS---EEEEHHHHHSGGGGGT
T ss_pred HhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCc---EEEecCcchHHHHHHH
Confidence 357889999999997 467788888866688776654 4332 233333 33432 22221 12121
Q ss_pred CCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 163 PFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 163 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.-..+.+|+|+-.- ... ...+..++|+++|.+++.
T Consensus 235 ~~~~~~~Dvvid~~-----g~~-------------~~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 235 FKDMPQPRLALNCV-----GGK-------------SSTELLRQLARGGTMVTY 269 (357)
T ss_dssp TSSSCCCSEEEESS-----CHH-------------HHHHHHTTSCTTCEEEEC
T ss_pred HhCCCCceEEEECC-----CcH-------------HHHHHHHhhCCCCEEEEE
Confidence 11111488887432 111 234577889999988774
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=87.21 E-value=0.75 Score=39.97 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=62.5
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCC-CC--CCCCCCee
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM-KM--PFPDNSFD 170 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~-~~--~~~~~~fD 170 (305)
..++.++.+||-+|+|. |..+..+++..+++|+++|.++..++.+++. |.. .++..+-. ++ ... +.+|
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~v~~~~~~~~~~~~~~-~~~D 245 (360)
T 1piw_A 174 RNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYF-DTFD 245 (360)
T ss_dssp HTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSC-SCEE
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc----CCC---EEEcCcCchHHHHHhh-cCCC
Confidence 36788999999999863 6677777765688999999999888877652 322 22221111 10 011 4699
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|+..-.-. + .. .+..+.++|+++|.++..
T Consensus 246 ~vid~~g~~--~-~~------------~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 246 LIVVCASSL--T-DI------------DFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEEECCSCS--T-TC------------CTTTGGGGEEEEEEEEEC
T ss_pred EEEECCCCC--c-HH------------HHHHHHHHhcCCCEEEEe
Confidence 998543210 0 10 345566788999988764
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=86.68 E-value=8.8 Score=31.48 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=47.9
Q ss_pred CeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 102 QKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
++||=.|| |..+..+++. .+.+|++++.++........ .+++++.+|+.++. -..+|+|+.....
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~--~~~~d~vi~~a~~ 73 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS--LDGVTHLLISTAP 73 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc--cCCCCEEEECCCc
Confidence 68999994 8888877742 37899999998865543322 35899999998865 4568998876554
Q ss_pred c
Q 042544 179 C 179 (305)
Q Consensus 179 ~ 179 (305)
.
T Consensus 74 ~ 74 (286)
T 3ius_A 74 D 74 (286)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=86.40 E-value=2.5 Score=31.01 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=43.2
Q ss_pred CCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CCCCCeeEEE
Q 042544 101 GQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FPDNSFDAVY 173 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~v~ 173 (305)
..+|+=+||| .++..+++ ..+.+|+++|.++..++.+++ ..+.++.+|..+.. ..-..+|+|+
T Consensus 7 ~~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--------~g~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (140)
T 3fwz_A 7 CNHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRE--------RGVRAVLGNAANEEIMQLAHLECAKWLI 76 (140)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred CCCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------cCCCEEECCCCCHHHHHhcCcccCCEEE
Confidence 3578888886 45554442 247899999999998876654 13678889986521 1124578877
Q ss_pred ec
Q 042544 174 AI 175 (305)
Q Consensus 174 ~~ 175 (305)
+.
T Consensus 77 ~~ 78 (140)
T 3fwz_A 77 LT 78 (140)
T ss_dssp EC
T ss_pred EE
Confidence 53
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=85.74 E-value=4.1 Score=33.55 Aligned_cols=75 Identities=21% Similarity=0.138 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
+++++|=-|++.|. .+..|++. +++|+.+|.+++.++.+.+.+...+ .++.++++|+.+.. + .-
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~-Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALN-DSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57788888877664 34444444 8999999999999988888777665 35889999998631 0 01
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+..|+++.+-.
T Consensus 83 G~iDiLVNNAG 93 (254)
T 4fn4_A 83 SRIDVLCNNAG 93 (254)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 57898887654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=85.73 E-value=1.7 Score=37.38 Aligned_cols=95 Identities=21% Similarity=0.315 Sum_probs=62.2
Q ss_pred HcCCCCCCeEEEEcCC--CChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-------C
Q 042544 95 QLGLKSGQKVLDVGCG--IGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-------F 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG--~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~ 164 (305)
...+.++.+||-+|+| .|..+..++... +++|+++|.++..++.+++. +.. .++ |..+.. .
T Consensus 165 ~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~--~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 165 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVI--NASMQDPLAEIRRI 235 (347)
T ss_dssp HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCC---EEe--cCCCccHHHHHHHH
Confidence 4677899999999997 455666666555 88999999999988877542 321 122 221111 1
Q ss_pred CC-CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 165 PD-NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 165 ~~-~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.. +.+|+|+..-. ... .++...+.|+++|.+++.
T Consensus 236 ~~~~~~d~vi~~~g-----~~~------------~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 236 TESKGVDAVIDLNN-----SEK------------TLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp TTTSCEEEEEESCC-----CHH------------HHTTGGGGEEEEEEEEEC
T ss_pred hcCCCceEEEECCC-----CHH------------HHHHHHHHHhcCCEEEEE
Confidence 11 46899875432 111 366677889999988774
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.55 E-value=4.3 Score=33.40 Aligned_cols=77 Identities=13% Similarity=0.008 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----------CCC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----------FPD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~ 166 (305)
+|+++|=-|++.|. .+..|++. +++|+.+|.+++.++.+.+.+...+ .++.++++|+.+.. -.-
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAA-GARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 57788877766553 33334443 8999999999999888877776655 35888889987621 012
Q ss_pred CCeeEEEeccccc
Q 042544 167 NSFDAVYAIEATC 179 (305)
Q Consensus 167 ~~fD~v~~~~~l~ 179 (305)
+..|+++.+-.+.
T Consensus 85 G~iDiLVNNAG~~ 97 (255)
T 4g81_D 85 IHVDILINNAGIQ 97 (255)
T ss_dssp CCCCEEEECCCCC
T ss_pred CCCcEEEECCCCC
Confidence 5789988765443
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=85.46 E-value=0.36 Score=42.28 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=59.0
Q ss_pred CCCCeEEEEcCC--CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCCCCeeE
Q 042544 99 KSGQKVLDVGCG--IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPDNSFDA 171 (305)
Q Consensus 99 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~ 171 (305)
.++.+||=+|++ .|..+..+++..+++|+++. ++..++.+++ .|.. .++...-.++ ....+.+|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~g~~d~ 234 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS----RGAE---EVFDYRAPNLAQTIRTYTKNNLRY 234 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCS---EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH----cCCc---EEEECCCchHHHHHHHHccCCccE
Confidence 788999999983 68888888876689999985 8877776654 3432 2222211111 011245898
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHH-HhCCceEEE
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEAL-KQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~~~i~ 215 (305)
|+-.- .... .+..+.+.| +++|.++..
T Consensus 235 v~d~~-----g~~~------------~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 235 ALDCI-----TNVE------------STTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp EEESS-----CSHH------------HHHHHHHHSCTTCEEEEES
T ss_pred EEECC-----CchH------------HHHHHHHHhhcCCCEEEEE
Confidence 87432 1211 477788888 699988764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=84.83 E-value=1.7 Score=37.40 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=64.0
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-CCCC
Q 042544 97 GLKSGQKVLDVGCGI-GGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-PDNS 168 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-~~~~ 168 (305)
.+.++.+||-+|+|. |..+..+++.. +.+|+++|.++..++.+++ .|.. .++..+- ++. . ....
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~-~~~~~v~~~t~g~g 239 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD---AAVKSGA-GAADAIRELTGGQG 239 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS---EEEECST-THHHHHHHHHGGGC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEEcCCC-cHHHHHHHHhCCCC
Confidence 578899999999874 77777888654 7899999999999888765 3432 2222111 110 0 1126
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+|+-.- .... .+..+.+.|+++|.+++.-
T Consensus 240 ~d~v~d~~-----G~~~------------~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 240 ATAVFDFV-----GAQS------------TIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEEEEESS-----CCHH------------HHHHHHHHEEEEEEEEECS
T ss_pred CeEEEECC-----CCHH------------HHHHHHHHHhcCCEEEEEC
Confidence 89887432 1211 4888999999999988753
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.54 E-value=1.2 Score=38.38 Aligned_cols=95 Identities=21% Similarity=0.280 Sum_probs=62.1
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCC-------
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPF------- 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~------- 164 (305)
...+.++.+||-+|+ |.|..+..++...+++|+++|.++..++.+++ .+.. .++ |..+ -.+
T Consensus 164 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~~~~ 234 (347)
T 2hcy_A 164 SANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGGE---VFI--DFTKEKDIVGAVLKA 234 (347)
T ss_dssp TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTCC---EEE--ETTTCSCHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCCc---eEE--ecCccHhHHHHHHHH
Confidence 346788999999998 46667777775558899999999888776654 2321 122 3321 010
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.++.+|+|+..-. ... .++.+.+.|+++|.+++.
T Consensus 235 ~~~~~D~vi~~~g-----~~~------------~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 235 TDGGAHGVINVSV-----SEA------------AIEASTRYVRANGTTVLV 268 (347)
T ss_dssp HTSCEEEEEECSS-----CHH------------HHHHHTTSEEEEEEEEEC
T ss_pred hCCCCCEEEECCC-----cHH------------HHHHHHHHHhcCCEEEEE
Confidence 1126898875432 111 477888899999988764
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=84.43 E-value=1.8 Score=33.38 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=41.5
Q ss_pred CCeEEEEcCCCChHHHHHHh---hc-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CC-CCCCeeE
Q 042544 101 GQKVLDVGCGIGGPLREIAQ---FS-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PF-PDNSFDA 171 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~---~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~-~~~~fD~ 171 (305)
+.+|+=+||| ..+..+++ .. +.+|+++|.++..++.+++ . .+.++.+|..+. .. .-..+|+
T Consensus 39 ~~~v~IiG~G--~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~----g~~~~~gd~~~~~~l~~~~~~~~ad~ 108 (183)
T 3c85_A 39 HAQVLILGMG--RIGTGAYDELRARYGKISLGIEIREEAAQQHRS----E----GRNVISGDATDPDFWERILDTGHVKL 108 (183)
T ss_dssp TCSEEEECCS--HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----T----TCCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred CCcEEEECCC--HHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----C----CCCEEEcCCCCHHHHHhccCCCCCCE
Confidence 5688888875 45555442 34 7899999999988766543 1 245677776541 11 1245788
Q ss_pred EEec
Q 042544 172 VYAI 175 (305)
Q Consensus 172 v~~~ 175 (305)
|+..
T Consensus 109 vi~~ 112 (183)
T 3c85_A 109 VLLA 112 (183)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8763
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=83.82 E-value=12 Score=30.49 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CCCCCeeE
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FPDNSFDA 171 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~ 171 (305)
.|+++|=-|.+.|. .+..|++. +++|+..|.+.. +.+.+.+...+ .++.+++.|+.+.. +..+..|+
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~-Ga~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAA-GAEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDI 82 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHc-CCEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence 57788877776664 33444444 899999998753 22333344444 35888999987632 34567899
Q ss_pred EEecccc
Q 042544 172 VYAIEAT 178 (305)
Q Consensus 172 v~~~~~l 178 (305)
++.+-.+
T Consensus 83 LVNNAGi 89 (247)
T 4hp8_A 83 LVNNAGI 89 (247)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 8876543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=83.67 E-value=0.61 Score=40.70 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=53.5
Q ss_pred CCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 101 GQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 101 ~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
+.+||=+|+| .|..+..++...+++|+++|.++..++.+.+.... .+.....+..++.-.-..+|+|+..-...
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~~~~ 241 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLVP 241 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence 4799999985 23333344444578999999999888777654321 12222211111100002479988654332
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
..+.+.. ..++..+.|++||.++.
T Consensus 242 ~~~~~~l-----------i~~~~~~~~~~g~~ivd 265 (361)
T 1pjc_A 242 GRRAPIL-----------VPASLVEQMRTGSVIVD 265 (361)
T ss_dssp TSSCCCC-----------BCHHHHTTSCTTCEEEE
T ss_pred CCCCCee-----------cCHHHHhhCCCCCEEEE
Confidence 2111111 24556677899986654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.60 E-value=1.9 Score=37.71 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=64.2
Q ss_pred HcC-CCCCCeEEEEcCC-CChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC------CCC-C-C
Q 042544 95 QLG-LKSGQKVLDVGCG-IGGPLREIAQFSS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD------FMK-M-P 163 (305)
Q Consensus 95 ~~~-~~~~~~vLDiGcG-~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d------~~~-~-~ 163 (305)
.++ +.++.+||-+|+| .|..+..+++..+ .+|+++|.++..++.+++ .|.. .++..+ +.+ + .
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~ 261 (380)
T 1vj0_A 189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMD 261 (380)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHH
T ss_pred hcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHH
Confidence 456 7889999999976 4667777776567 599999999998887764 3332 222221 000 0 0
Q ss_pred -CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 164 -FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 164 -~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.....+|+|+-.-. ... .+....++|+++|.+++.-
T Consensus 262 ~~~g~g~Dvvid~~g-----~~~------------~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 262 ITHGRGADFILEATG-----DSR------------ALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp HTTTSCEEEEEECSS-----CTT------------HHHHHHHHEEEEEEEEECC
T ss_pred HhCCCCCcEEEECCC-----CHH------------HHHHHHHHHhcCCEEEEEe
Confidence 11236999985421 111 4788899999999887753
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=83.48 E-value=5 Score=34.05 Aligned_cols=79 Identities=10% Similarity=-0.003 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
.+.+||=.|++.| .+..+++ ..+.+|++++.++..++.+.+.+...+...++.++..|+.+.. + .-
T Consensus 7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 4678998887755 4444432 1378999999999988877776665544346889999997631 0 01
Q ss_pred CCeeEEEeccccc
Q 042544 167 NSFDAVYAIEATC 179 (305)
Q Consensus 167 ~~fD~v~~~~~l~ 179 (305)
+..|+++.+-.+.
T Consensus 86 g~id~lv~nAg~~ 98 (319)
T 3ioy_A 86 GPVSILCNNAGVN 98 (319)
T ss_dssp CCEEEEEECCCCC
T ss_pred CCCCEEEECCCcC
Confidence 4689988766543
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.16 E-value=2.5 Score=36.59 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=36.9
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhc-CCeEEEEcCCHHHHHHHHH
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFS-STSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~ 141 (305)
..+.++.+||=+|+| .|..+..+++.. +++|+++|.++..++.+++
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~ 229 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER 229 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 678899999999985 345666667656 8899999999998887764
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=82.98 E-value=5.8 Score=35.20 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=44.3
Q ss_pred CCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CCCCCeeEEE
Q 042544 101 GQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FPDNSFDAVY 173 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~v~ 173 (305)
..+|+=+||| .++..+++ ..+..|+++|.++..++.+++ . .+.++.+|+.+.. ..-...|+|+
T Consensus 4 ~~~viIiG~G--r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~----g~~vi~GDat~~~~L~~agi~~A~~vi 73 (413)
T 3l9w_A 4 GMRVIIAGFG--RFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----F----GMKVFYGDATRMDLLESAGAAKAEVLI 73 (413)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----T----TCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred CCeEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----C----CCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence 4578878875 45555542 247899999999999887764 1 3568899987631 2224578877
Q ss_pred ec
Q 042544 174 AI 175 (305)
Q Consensus 174 ~~ 175 (305)
+.
T Consensus 74 v~ 75 (413)
T 3l9w_A 74 NA 75 (413)
T ss_dssp EC
T ss_pred EC
Confidence 54
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.89 E-value=1.6 Score=38.69 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 100 SGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 100 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
++.+|+=+|+|. |..+..++...+++|+++|.++..++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 467999999983 444445555568999999999988777655
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=82.70 E-value=0.45 Score=40.30 Aligned_cols=67 Identities=19% Similarity=0.136 Sum_probs=39.4
Q ss_pred CeEEEEcCCCC-CC-CCCCCeeEEEecccccccCC----hhh---h-hhcCCCC-CcccHHHHHHHHHhCCceEEEec
Q 042544 151 TCNFVKADFMK-MP-FPDNSFDAVYAIEATCHAPD----AAE---I-EIGDGLP-DIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 151 ~~~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~~----~~~---~-~~~~~~~-~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++.++++|..+ ++ +++++||+|++.--.....+ ... . .....+. ....+.++.++|+|||.+++...
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 57899999876 32 56789999998654322111 000 0 0000000 01247788999999999988653
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=82.44 E-value=0.31 Score=42.52 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=29.8
Q ss_pred cCCCCC-CeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHH
Q 042544 96 LGLKSG-QKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEY 134 (305)
Q Consensus 96 ~~~~~~-~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~ 134 (305)
..+.++ .+||=+|+ |.|..+..+++..+++++++..++.
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~ 203 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP 203 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 467888 99999987 3667778888666889988875544
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=81.88 E-value=0.63 Score=40.89 Aligned_cols=101 Identities=15% Similarity=0.007 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
++.+|+=+|+|. |..+...+...+++|+++|.++..++.+.+.. +. .+.....+..++.-.-...|+|+..-..
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 578999999852 22333333335789999999998877665532 21 1222111111110001247888764221
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.....+.. +.++..+.|+|||.++...
T Consensus 242 p~~~t~~l-----------i~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 242 PGAKAPKL-----------VSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp TTSCCCCC-----------BCHHHHTTSCTTCEEEEGG
T ss_pred CCCCCcce-----------ecHHHHhcCCCCcEEEEEe
Confidence 11111111 2456677789998766543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=80.45 E-value=0.6 Score=40.99 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 100 SGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 100 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
++.+|+=+|+|. |..+..++...+++|+++|.++..++.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 567999999983 444444554458999999999988776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 305 | ||||
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 9e-16 | |
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 4e-14 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 5e-12 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 8e-12 | |
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 2e-11 | |
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 2e-11 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 6e-11 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 1e-10 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 3e-10 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 4e-10 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 1e-09 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-09 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 7e-09 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 2e-08 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 3e-08 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 3e-08 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-07 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 3e-07 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 5e-07 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 9e-07 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 2e-06 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-06 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 3e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 3e-06 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 4e-06 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 5e-06 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 7e-06 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-04 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 1e-04 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 2e-04 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 3e-04 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 0.002 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 0.002 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 0.003 |
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 73.7 bits (179), Expect = 9e-16
Identities = 64/277 (23%), Positives = 105/277 (37%), Gaps = 24/277 (8%)
Query: 49 DMVNKYYDLVTS--FYEFGW-GESFHF---APRWKGESLRESIKRHEHFLALQL----GL 98
D YYD S FY W GE H + +RE+ R + +LA +L L
Sbjct: 6 DNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVL 65
Query: 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158
+ K LD+G G GG R + + S+ LN Q R +E N AG+
Sbjct: 66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS 125
Query: 159 FMKMPFPDNSFDAVYAIEATCHAPDAAEIEIG-------DGLPDIRSTRKCLEALKQAGF 211
F+++P DNS+D +++ +A H+PD ++ G+ I + + + ++
Sbjct: 126 FLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI-TDPMKEDGIDKSSI 184
Query: 212 EVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFV-----GLAPK 266
+ I ++ D L + R S + + K + +A
Sbjct: 185 QPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYSKVKAELIKRSSEIASF 244
Query: 267 GSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQ 303
S Q +++ E GGR T L RK
Sbjct: 245 CSPEFQANMKRGLEHWIEGGRAGKLT-WGGMLFRKSD 280
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 69.1 bits (168), Expect = 4e-14
Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 6/142 (4%)
Query: 47 YTDMVNKYYDLVTSFYEFGWGESFHFAPRW---KGESLRESIKRHEHFLALQLGLKSGQK 103
+ V +YD F++ S ++ + +L E+ +L L+ G
Sbjct: 5 PVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMT 64
Query: 104 VLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP 163
+LD+GCG G +R +V GL +E Q K + + +
Sbjct: 65 LLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDE---VDSPRRKEVRIQGWE 121
Query: 164 FPDNSFDAVYAIEATCHAPDAA 185
D D + ++ A H D A
Sbjct: 122 EFDEPVDRIVSLGAFEHFADGA 143
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 61.4 bits (148), Expect = 5e-12
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 10/128 (7%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNF 154
+DVGCG GG E+ V ++ N I+ + + G+
Sbjct: 28 LAEPGKNDVAVDVGCGTGGVTLEL-AGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTL 86
Query: 155 VKADFMKMPFPDNSFDAVYAIEATCHAPDAAEI---------EIGDGLPDIRSTRKCLEA 205
++ D + D + + I I + + + +E
Sbjct: 87 MEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMEC 146
Query: 206 LKQAGFEV 213
L+ GF+V
Sbjct: 147 LRDLGFDV 154
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 61.3 bits (148), Expect = 8e-12
Identities = 21/175 (12%), Positives = 46/175 (26%), Gaps = 34/175 (19%)
Query: 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVD 149
+L L+ ++VL +G G + +A + + + ++L
Sbjct: 47 LKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF---EKLLELVRER 103
Query: 150 KTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEI-------------------- 189
+ D K + V I + EI
Sbjct: 104 NNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKAR 163
Query: 190 -GDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRL 243
D + K + + F+++ L +P H + ++R
Sbjct: 164 SIDSTAEPEEVFKSVLKEMEGDFKIVKHGSL---------MPYHRDHIFIHAYRF 209
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 61.5 bits (148), Expect = 2e-11
Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 6/133 (4%)
Query: 54 YYDLVTSFYEFGWGESFHFAPRW---KGESLRESIKRHEHFLALQLGLKSGQKVLDVGCG 110
+YD+ F+ + ++ + +L E+ +L LK G +LD+GCG
Sbjct: 3 HYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCG 62
Query: 111 IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170
G +R + +V GL ++ Q R +++ T + D
Sbjct: 63 WGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLAS---IDTNRSRQVLLQGWEDFAEPVD 119
Query: 171 AVYAIEATCHAPD 183
+ +IEA H
Sbjct: 120 RIVSIEAFEHFGH 132
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 61.0 bits (147), Expect = 2e-11
Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 6/135 (4%)
Query: 51 VNKYYDLVTSFYEFGWGESFHFAPRW---KGESLRESIKRHEHFLALQLGLKSGQKVLDV 107
V +YDL F+ + ++ + +L+E+ +LGL+ G +LDV
Sbjct: 10 VQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDV 69
Query: 108 GCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167
GCG G + + +V GL ++ Q ++L + + D
Sbjct: 70 GCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQL---VANSENLRSKRVLLAGWEQFDE 126
Query: 168 SFDAVYAIEATCHAP 182
D + +I A H
Sbjct: 127 PVDRIVSIGAFEHFG 141
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (144), Expect = 6e-11
Identities = 18/161 (11%), Positives = 49/161 (30%), Gaps = 13/161 (8%)
Query: 47 YTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLD 106
T ++ V + + E + + E E+ + ++ + +D
Sbjct: 99 STGLLRHILQQVYN-HSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 157
Query: 107 VGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGV--------DKTCNFVKA 157
+G G+G + ++A + G+ + + ++R +
Sbjct: 158 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217
Query: 158 DFMKMPFPDNSFDA-VYAIEATCHAP--DAAEIEIGDGLPD 195
DF+ + + + V + P D E + +
Sbjct: 218 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKE 258
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 58.4 bits (140), Expect = 1e-10
Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 16/150 (10%)
Query: 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK 150
L L +K G ++LD+G G G L A+ + TG++ + + K
Sbjct: 24 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR-RAEELGVS 82
Query: 151 TCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAG 210
+ + D + AT A A + ++LK G
Sbjct: 83 ERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFA-----------GAEELLAQSLKPGG 131
Query: 211 FEVI----WEKDLAPDSPLPWYLPLDTSHF 236
+I W + A + TS F
Sbjct: 132 IMLIGEPYWRQLPATEEIAQACGVSSTSDF 161
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 57.3 bits (137), Expect = 3e-10
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 94 LQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCN 153
++L K G VLD+GCG GG L + + G++ E I + R
Sbjct: 18 IRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVF 77
Query: 154 FVKADFMKMPF-PDNSFDAVYAIEATCHAPD 183
F D FD + + + +A
Sbjct: 78 FRAQDSYGRHMDLGKEFDVISSQFSFHYAFS 108
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 57.0 bits (137), Expect = 4e-10
Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 8/133 (6%)
Query: 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGV 148
++ ++ GL+ G +L+VG G G I ++T + +E + + +
Sbjct: 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 135
Query: 149 DKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAA------EIEIGDGLPDIRSTRKC 202
++D + I + LP+ + K
Sbjct: 136 IGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKT 195
Query: 203 LEALKQAGFEVIW 215
+ +L +G +
Sbjct: 196 VLSLSASGMHHLE 208
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 55.5 bits (133), Expect = 1e-09
Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 26/150 (17%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCN 153
+ +K K+L +G G +A V + + +EL +
Sbjct: 69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIM---RELLDACAERENII 125
Query: 154 FVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEI---------------------GDG 192
+ D K N + V I P+ AEI I D
Sbjct: 126 PILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDV 185
Query: 193 LPDIRSTRKCLEA-LKQAGFEVIWEKDLAP 221
D + K + L+ GF+++ E D+ P
Sbjct: 186 TKDPKEIFKEQKEILEAGGFKIVDEVDIEP 215
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.9 bits (134), Expect = 2e-09
Identities = 32/238 (13%), Positives = 62/238 (26%), Gaps = 43/238 (18%)
Query: 72 FAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLN 130
F+ GE L + LK G +D+G G+G + + A G
Sbjct: 192 FSNYVYGELLPNFLS---DVYQQ-CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCE 247
Query: 131 NNEYQITRGKELNRFAGVD---------KTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181
+ +K F+ I
Sbjct: 248 IMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL 307
Query: 182 PDAAEIEIGDGLPDI-RSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSS 240
D D+ + K L+ K + + L + + ++
Sbjct: 308 FD----------EDLNKKVEKILQTAKVGCKIISLK-------------SLRSLTYQINF 344
Query: 241 FRLTSVGRFVTRNMVKALEF-VGLAPKGS----QRVQDFLEKAAEGLAAGGRKEIFTP 293
+ + ++ + E V G V + ++++ AA GR+ TP
Sbjct: 345 YNVENIFNRLKVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPAARGRRNRGTP 402
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 53.0 bits (126), Expect = 7e-09
Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 23/187 (12%)
Query: 88 HEHFLAL---QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNR 144
H H L L ++ +VLD+G G G + + G++ + + +
Sbjct: 1 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQ 59
Query: 145 FAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE 204
GV+ +PFPD+SFD + A H D ++ R+
Sbjct: 60 EKGVENVRFQQG-TAESLPFPDDSFDIITCRYAAHHFSDVR-----------KAVREVAR 107
Query: 205 ALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRN-MVKALEFVGL 263
LKQ G ++ + D L ++ L+ R S R + + L
Sbjct: 108 VLKQDGRFLLVDHYAPEDPVLDEFVNH------LNRLRDPSHVRESSLSEWQAMFSANQL 161
Query: 264 APKGSQR 270
A + Q+
Sbjct: 162 AYQDIQK 168
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 52.0 bits (124), Expect = 2e-08
Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 8/134 (5%)
Query: 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAG 147
F+A+ L +K G +++D G G G +A+ SS V E + G
Sbjct: 93 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG 152
Query: 148 VDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDG------LPDIRSTRK 201
+ + D + + + + D + G P ++
Sbjct: 153 LIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQE 212
Query: 202 CLEALKQAGFEVIW 215
L+ L++ F I
Sbjct: 213 TLKKLQELPFIRIE 226
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 3e-08
Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 75 RWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEY 134
+ + ES R+ I ++ H + + VLDVGCG G A+ + V G++ +E
Sbjct: 17 KIRTESYRDFIYQNPH-------IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE- 68
Query: 135 QITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIE 188
+ + ++ R ++ T +K ++ P D + + + ++
Sbjct: 69 ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLD 122
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (124), Expect = 3e-08
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 10/116 (8%)
Query: 73 APRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNN 132
R S R +I +++ L + VLDVGCG G A+ + V G++ +
Sbjct: 20 TVRT--LSYRNAIIQNKD-------LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS 70
Query: 133 EYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIE 188
I KEL G ++ + P D + + + ++
Sbjct: 71 S-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMD 125
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.8 bits (118), Expect = 1e-07
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 79 ESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITR 138
+ R S+ + H L + VLDVG G G A+ + V G+ +
Sbjct: 19 LTYRNSMFHNRH-------LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD-Y 70
Query: 139 GKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180
++ + +D +K ++ P D + +
Sbjct: 71 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 112
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 48.4 bits (115), Expect = 3e-07
Identities = 18/138 (13%), Positives = 40/138 (28%), Gaps = 12/138 (8%)
Query: 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNE--YQITRGKELNRF 145
+ + + G +VL+ G G G + + + V + R +
Sbjct: 86 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY 145
Query: 146 AGVDKTCNFVKADFMKMPFPDNSFDAVY--AIEATCHAPDAAEIEIGDG-----LPDIRS 198
V +D PD S D + + + + G + +
Sbjct: 146 GQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQ 205
Query: 199 TRKCLEALK-QAGFEVIW 215
+ +EAL+ + +
Sbjct: 206 LSRIVEALRAKQCWTEPR 223
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 47.4 bits (112), Expect = 5e-07
Identities = 17/147 (11%), Positives = 34/147 (23%), Gaps = 20/147 (13%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTC 152
+K G+ VL +G G ++ + G+ + + +
Sbjct: 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPI 127
Query: 153 NFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLP------------------ 194
+ D ++ A L
Sbjct: 128 LGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTK 187
Query: 195 DIRSTRKCLEALKQAGFEVIWEKDLAP 221
+ + +E FEVI +L P
Sbjct: 188 EPEQVFREVERELSEYFEVIERLNLEP 214
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 9e-07
Identities = 31/230 (13%), Positives = 66/230 (28%), Gaps = 43/230 (18%)
Query: 18 DKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYY-DLVTSFYEFGWGESFHFAPRW 76
K + L + + + +G +V K+ ++ S + G+ + R
Sbjct: 18 TKFKKLFRLNNFGLLNSNWGAVPFG------KIVGKFPGQILRSSF----GKQYM-LRRP 66
Query: 77 KGESLRESIKRHEH--------FLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSV 126
E +KR + + + G VL+ G G GG +++ S V
Sbjct: 67 ALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRV 126
Query: 127 TGLNNNEYQITRGKE----------LNRFAGVDKTCNFVKADFMKMP--FPDNSFDA--V 172
+ K+ L+ +F+ D +FDA +
Sbjct: 127 ISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL 186
Query: 173 YAIEATCHAPDAAEIEIGDG-----LPDIRSTRKCLEALK--QAGFEVIW 215
+ P G + +I + L+ ++ +
Sbjct: 187 DMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEK 236
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 45.8 bits (107), Expect = 2e-06
Identities = 39/233 (16%), Positives = 66/233 (28%), Gaps = 39/233 (16%)
Query: 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFV 155
LK ++VLDV G G A F V + E + + + +V
Sbjct: 11 AALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARA-FIEGNGHQQVEYV 68
Query: 156 KADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215
+ D +MPF D F V A H P+ A + LK+ G ++
Sbjct: 69 QGDAEQMPFTDERFHIVTCRIAAHHFPNPASF-----------VSEAYRVLKKGGQLLLV 117
Query: 216 EKDLAPDSPLPWYL--------PLDTSHFSLSSFR--LTSVG----------------RF 249
+ + + + S + L G +
Sbjct: 118 DNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDW 177
Query: 250 VTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302
R V + L+ + ++ +K + G ARKP
Sbjct: 178 CDRMNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILMKARKP 230
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 2e-06
Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 27/154 (17%)
Query: 79 ESLRESIKRH-EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-------SSTSVTGLN 130
+ ++E + + + KS K+L +G G G +I + +
Sbjct: 18 QCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVE 77
Query: 131 NNEYQITRGKELNRFAGVDKTCNFVKA--------DFMKMPFPDNSFDAVYAIEATCHAP 182
+ QI + KEL + F M +D ++ I+ +
Sbjct: 78 PSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK 137
Query: 183 DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216
D + + L +I
Sbjct: 138 DIPA-----------TLKFFHSLLGTNAKMLIIV 160
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 45.0 bits (105), Expect = 2e-06
Identities = 22/143 (15%), Positives = 34/143 (23%), Gaps = 13/143 (9%)
Query: 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAG 147
H LA + G + LD+GCG G +A N + A
Sbjct: 19 HSDVLAAAKVVAPG-RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLER---IKAA 74
Query: 148 VDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALK 207
+ D +D + + + K
Sbjct: 75 EGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGL---------IANMQRCTK 125
Query: 208 QAGFEVIWEKDLAPDSPLPWYLP 230
G+ +I PD P P
Sbjct: 126 PGGYNLIVAAMDTPDFPCTVGFP 148
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.7 bits (107), Expect = 3e-06
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 8/112 (7%)
Query: 82 RESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKE 141
R ++ +L L +VLDV CG G + + SVT ++ ++ + +
Sbjct: 38 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVE-EGFSVTSVDASDKMLKYALK 96
Query: 142 LNRFAGVDKTCNFVKADFMKM-------PFPDNSFDAVYAIEATCHAPDAAE 186
+ + + P D + + H PD+
Sbjct: 97 ERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKG 148
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 45.3 bits (106), Expect = 3e-06
Identities = 31/134 (23%), Positives = 46/134 (34%), Gaps = 13/134 (9%)
Query: 99 KSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA 157
VLD+GCG G A + GL+ ++ I A F A
Sbjct: 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI------KAAAKRYPQVTFCVA 136
Query: 158 DFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRS-TRKCLEALKQAGFEVIWE 216
++PF D S DA+ I A C A + A + G + + L LK
Sbjct: 137 SSHRLPFSDTSMDAIIRIYAPCKAEELARVVKPGGWVITATPGPRHLMELKGL-----IY 191
Query: 217 KDLAPDSPLPWYLP 230
++ +P L
Sbjct: 192 NEVHLHAPHAEQLE 205
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 4e-06
Identities = 12/85 (14%), Positives = 25/85 (29%)
Query: 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158
G +VL+VG G+ ++ + + N+ R ++ +
Sbjct: 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWE 111
Query: 159 FMKMPFPDNSFDAVYAIEATCHAPD 183
+ PD FD +
Sbjct: 112 DVAPTLPDGHFDGILYDTYPLSEET 136
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 43.9 bits (102), Expect = 5e-06
Identities = 15/101 (14%), Positives = 23/101 (22%), Gaps = 13/101 (12%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV------ 148
L + G +VL CG + ++ V G +E + R
Sbjct: 15 SLNVVPGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHITSQGD 73
Query: 149 ------DKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD 183
+ F A Y A P
Sbjct: 74 FKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPA 114
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 44.5 bits (104), Expect = 7e-06
Identities = 17/151 (11%), Positives = 41/151 (27%), Gaps = 16/151 (10%)
Query: 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFA 146
+ + ++D GCG G + + TG+++ E + E
Sbjct: 16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL---AEARELF 72
Query: 147 GVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEAL 206
+ + ++ +D H + +K + ++
Sbjct: 73 RLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETM-----------LQKMIHSV 121
Query: 207 KQAGFEVIWEKDLAPDSPLPWYLPLDTSHFS 237
K+ G + +E + S F
Sbjct: 122 KKGGKIICFEPHWISNMASYLLDGEKQSEFI 152
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 40.9 bits (94), Expect = 1e-04
Identities = 37/195 (18%), Positives = 67/195 (34%), Gaps = 24/195 (12%)
Query: 51 VNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCG 110
+ + Y L+ +Y+ + R + E ++ I E + + ++VLD+ CG
Sbjct: 1 MYELYTLLAEYYDTIY--------RRRIERVKAEIDFVEEIFK-EDAKREVRRVLDLACG 51
Query: 111 IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170
G P E+A+ V GL+ +E + + + + N FD
Sbjct: 52 TGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKE---RNLKIEFLQGDVLEIAFKNEFD 107
Query: 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAG---FEVIWEKDLAPDSPLPW 227
AV +T D ++ + K EALK G + D P+ W
Sbjct: 108 AVTMFFSTIMYFDEEDLR--------KLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVW 159
Query: 228 YLPLDTSHFSLSSFR 242
+ +R
Sbjct: 160 NEQKGEEKLVIMDWR 174
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 7/118 (5%)
Query: 55 YDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGP 114
D VT E G S +R + K + V+D+ GIG
Sbjct: 68 SDTVTVHVENGIKYKLDV--AKIMFSPANVKERV----RMAKVAKPDELVVDMFAGIGHL 121
Query: 115 LREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172
IA + V + + Y E V+ + D + +N D +
Sbjct: 122 SLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN-RDFPGENIADRI 178
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 2e-04
Identities = 24/183 (13%), Positives = 48/183 (26%), Gaps = 48/183 (26%)
Query: 37 GGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQL 96
GG+E ++ D + YY SF +P + E L+ +++
Sbjct: 3 GGDEYQKHFLPRDYLATYY-------------SFDGSPSPEAEMLKFNLECLHKTFGP-- 47
Query: 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVK 156
G G ++D+G G A S +T + + ++ +
Sbjct: 48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAV 107
Query: 157 ADFMKM---------------------------------PFPDNSFDAVYAIEATCHAPD 183
++ P D V + A A
Sbjct: 108 KFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC 167
Query: 184 AAE 186
+ +
Sbjct: 168 SLD 170
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 39.4 bits (90), Expect = 3e-04
Identities = 44/238 (18%), Positives = 83/238 (34%), Gaps = 22/238 (9%)
Query: 65 GWGESFHFAPRWKGESLRESIKRHEHFLALQLG-LKSGQKVLDVGCGIGGPLREIAQFSS 123
G+ E + P + + +E R E L + +K KVLD+ CG+GG + +
Sbjct: 1 GFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF 60
Query: 124 TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD 183
V + + K + F+ D K+ F D +FD V I++ H
Sbjct: 61 EVV---GVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP 117
Query: 184 AAEIEIGDGLPDIRST-RKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSF- 241
++ ++ LK +G +++ DL P + + +S
Sbjct: 118 ----------LELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVI 167
Query: 242 ----RLTSVGRFVTRNMVKALEFVGLAPKGSQRVQD--FLEKAAEGLAAGGRKEIFTP 293
T V F + + F G + + F ++A E + ++ P
Sbjct: 168 PDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 225
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 36.9 bits (84), Expect = 0.002
Identities = 26/217 (11%), Positives = 53/217 (24%), Gaps = 35/217 (16%)
Query: 41 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKS 100
E + D +Y ++ I+ +F+A G +
Sbjct: 36 AELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGM-DHVHDVDIEGSRNFIASLPGHGT 94
Query: 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM 160
+ LD G GIG + + + L ++ + K F+ A
Sbjct: 95 S-RALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG---MPVGKFILASME 150
Query: 161 KMPFPDNSFDAVYAI----------------EATCHAPDAAEIEIGDGLPD--------- 195
P N++D + I +
Sbjct: 151 TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKE 210
Query: 196 ----IRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWY 228
RS ++G V+ ++ + P +
Sbjct: 211 DSSLTRSDIHYKRLFNESGVRVV-KEAFQEEWPTDLF 246
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.002
Identities = 22/163 (13%), Positives = 40/163 (24%), Gaps = 29/163 (17%)
Query: 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV 148
+ L L KSG +V CG ++ A + V G+ +E I +
Sbjct: 34 KKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHS-VVGVEISELGIQEFFTEQNLSYS 92
Query: 149 DKTCN-----------------FVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGD 191
++ + + F FD ++ A
Sbjct: 93 EEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPG------- 145
Query: 192 GLPDIRSTRKCLEALKQAG--FEVIWEKDLAPDSPLPWYLPLD 232
L + + D P+Y+P
Sbjct: 146 --DRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHA 186
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (81), Expect = 0.003
Identities = 31/214 (14%), Positives = 51/214 (23%), Gaps = 33/214 (15%)
Query: 42 ERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSG 101
E + + Y+ + + G H + + S K + FL
Sbjct: 6 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISS----IDINSSRKFLQRFLREGPNKTGT 61
Query: 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161
LD G GIG + + V ++ E + + K G F
Sbjct: 62 SCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF 121
Query: 162 MPFPDNSFDAVY---------------AIEATCHAPDAAEIEIGDGLPD----------- 195
P PD+ I I D +
Sbjct: 122 TPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSS 181
Query: 196 -IRSTRKCLEALKQAGFEVIWEKDLA--PDSPLP 226
R + AG ++ E+ PD
Sbjct: 182 VCRDLDVVRRIICSAGLSLLAEERQENLPDEIYH 215
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 305 | |||
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.96 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.94 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.93 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.93 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.92 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.92 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.89 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.89 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.87 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.87 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.87 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.86 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.85 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.85 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.84 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.82 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.81 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.81 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.8 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.8 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.79 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.78 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.78 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.76 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.76 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.75 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.75 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.74 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.74 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.74 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.72 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.7 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.69 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.69 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.68 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.68 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.67 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.67 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.67 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.65 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.63 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.63 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.63 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.61 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.61 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.61 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.6 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.6 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.6 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.59 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.5 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.46 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.43 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.42 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.41 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.35 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.34 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.33 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.29 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.27 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.25 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.25 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.25 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.21 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.21 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.21 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.17 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.14 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.12 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.12 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.06 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.04 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.04 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.97 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.89 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.83 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.8 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.78 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.76 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.69 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.67 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.66 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.65 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.63 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.58 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.56 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.55 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.55 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.54 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.51 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.46 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.42 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.41 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.37 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.26 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.07 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.03 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.94 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.91 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.84 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.4 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.33 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.2 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.15 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.14 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.13 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.83 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.58 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.55 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.49 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.29 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.28 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.26 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.26 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.16 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.05 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.76 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.7 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.48 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.47 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.45 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.25 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.97 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.88 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.86 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.62 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.59 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 93.98 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.8 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.61 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.19 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.92 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.12 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 92.09 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 91.81 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 91.59 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.33 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 90.91 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 90.37 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.74 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 89.64 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 89.29 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 88.98 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 88.42 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 87.88 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 87.85 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 87.35 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.21 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 86.9 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 86.84 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 86.61 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 86.07 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 86.04 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 85.0 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 84.71 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 84.14 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 83.91 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 83.85 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 83.62 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 82.86 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 82.44 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 82.18 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 81.96 |
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.96 E-value=1.6e-27 Score=203.76 Aligned_cols=161 Identities=30% Similarity=0.485 Sum_probs=134.8
Q ss_pred HHHHHHHHhh--hHHHHHhhcC-CccccccCCC----CccHHHHHHHHHHHHH----HHcCCCCCCeEEEEcCCCChHHH
Q 042544 48 TDMVNKYYDL--VTSFYEFGWG-ESFHFAPRWK----GESLRESIKRHEHFLA----LQLGLKSGQKVLDVGCGIGGPLR 116 (305)
Q Consensus 48 ~~~~~~~yd~--~~~~y~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~l~----~~~~~~~~~~vLDiGcG~G~~~~ 116 (305)
.+.+..|||. ...||...|+ +.+|++ .|. ...+.++..+..+.+. ...+++++.+|||||||+|.++.
T Consensus 5 ~~~~~~~y~~~~~~~fy~~~w~g~~~h~G-~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~ 83 (282)
T d2o57a1 5 KDNAEIYYDDDDSDRFYFHVWGGEDIHVG-LYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAAR 83 (282)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTTSCCCSC-CCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHH
T ss_pred HHHHHHhcCCchhHHHHHHHcCCCCceee-ecCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHh
Confidence 4678888997 6689988774 567765 232 3445555554444444 44578899999999999999999
Q ss_pred HHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCc
Q 042544 117 EIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDI 196 (305)
Q Consensus 117 ~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~ 196 (305)
.+++..+++|+|+|+|+.|++.|+++....++.++++++++|+.++|+++++||+|++..+++|++++..
T Consensus 84 ~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~---------- 153 (282)
T d2o57a1 84 FLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLK---------- 153 (282)
T ss_dssp HHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHH----------
T ss_pred hhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccCHHH----------
Confidence 9997668899999999999999999999999988999999999999999999999999999999999876
Q ss_pred ccHHHHHHHHHhCCceEEEeccCC
Q 042544 197 RSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 197 ~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+++++.++|||||.+++.+....
T Consensus 154 -~l~~~~~~LkpgG~l~~~~~~~~ 176 (282)
T d2o57a1 154 -VFQECARVLKPRGVMAITDPMKE 176 (282)
T ss_dssp -HHHHHHHHEEEEEEEEEEEEEEC
T ss_pred -HHHHHHHhcCCCcEEEEEEeecC
Confidence 69999999999999999876544
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=6.1e-26 Score=193.10 Aligned_cols=167 Identities=19% Similarity=0.265 Sum_probs=141.2
Q ss_pred HHHHHHHHhhhHHHHHhhcCCccccccC-CC--CccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCC
Q 042544 48 TDMVNKYYDLVTSFYEFGWGESFHFAPR-WK--GESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124 (305)
Q Consensus 48 ~~~~~~~yd~~~~~y~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 124 (305)
.+.+++|||..++||...+|++++|+.- |. ...+.+++.+..+.+++.+++++|.+|||||||.|.++..+++..++
T Consensus 6 ~~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~ 85 (291)
T d1kpia_ 6 VEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV 85 (291)
T ss_dssp HHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC
T ss_pred HhHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc
Confidence 3779999999999999999999988744 43 45799999999999999999999999999999999999999965589
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCC-cccHHHHH
Q 042544 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPD-IRSTRKCL 203 (305)
Q Consensus 125 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~ 203 (305)
+|+|+++|+.+++.+++++...++..++.+...|.. +++++||.|++..+++|+++.... .+..+ ..+++++.
T Consensus 86 ~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~~~~fD~i~sie~~eH~~~~~~~---~~~~~~~~~f~~i~ 159 (291)
T d1kpia_ 86 NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFDEPVDRIVSLGAFEHFADGAGD---AGFERYDTFFKKFY 159 (291)
T ss_dssp EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCCCCCSEEEEESCGGGTTCCSSC---CSTTHHHHHHHHHH
T ss_pred ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---ccccccceEeechhHHhcchhhhh---hHHHHHHHHHHHHH
Confidence 999999999999999999999999888999888864 346889999999999999874210 00000 11699999
Q ss_pred HHHHhCCceEEEeccCC
Q 042544 204 EALKQAGFEVIWEKDLA 220 (305)
Q Consensus 204 ~~L~~gG~~~i~~~~~~ 220 (305)
++|||||.+++.+....
T Consensus 160 ~~LkpgG~~~l~~i~~~ 176 (291)
T d1kpia_ 160 NLTPDDGRMLLHTITIP 176 (291)
T ss_dssp HTSCTTCEEEEEEEECC
T ss_pred HhCCCCCceEEEEEecc
Confidence 99999999999876543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=1.3e-25 Score=190.49 Aligned_cols=159 Identities=19% Similarity=0.233 Sum_probs=141.6
Q ss_pred HHHHHHHHhhhHHHHHhhcCCcccccc-CCC--CccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCC
Q 042544 48 TDMVNKYYDLVTSFYEFGWGESFHFAP-RWK--GESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124 (305)
Q Consensus 48 ~~~~~~~yd~~~~~y~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 124 (305)
.++++.|||..++||...+|++++++. .|. ...+.+++.+..+.+++.+++.+|.+|||||||.|..++.+++..++
T Consensus 7 ~~~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~ 86 (285)
T d1kpga_ 7 FANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV 86 (285)
T ss_dssp HHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC
T ss_pred HHHHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc
Confidence 467999999999999999999999864 453 45789999999999999999999999999999999999999965589
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHH
Q 042544 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE 204 (305)
Q Consensus 125 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (305)
+|+|+++|+.+++.|++++...++.+++++..+|...++ ++||.|++..+++|+....... +++++.+
T Consensus 87 ~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~---------~~~~~~r 154 (285)
T d1kpga_ 87 NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDA---------FFSLAHR 154 (285)
T ss_dssp EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHH---------HHHHHHH
T ss_pred ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHH---------HHHHHHh
Confidence 999999999999999999999999889999999998764 6799999999999997653322 6999999
Q ss_pred HHHhCCceEEEecc
Q 042544 205 ALKQAGFEVIWEKD 218 (305)
Q Consensus 205 ~L~~gG~~~i~~~~ 218 (305)
+|+|||.+++.+..
T Consensus 155 ~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 155 LLPADGVMLLHTIT 168 (285)
T ss_dssp HSCTTCEEEEEEEE
T ss_pred hcCCCCcEEEEEEe
Confidence 99999999997754
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=1e-25 Score=191.14 Aligned_cols=153 Identities=18% Similarity=0.291 Sum_probs=135.6
Q ss_pred HHHhhhHHHHHhhcCCccccccC-CCC--ccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEE
Q 042544 53 KYYDLVTSFYEFGWGESFHFAPR-WKG--ESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGL 129 (305)
Q Consensus 53 ~~yd~~~~~y~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv 129 (305)
.|||..++||+.++|++++++.- |.. ..+.+++.+..+.++..+.+++|.+|||||||+|.++..+++..+++|+|+
T Consensus 2 aHYD~~~~fy~~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi 81 (280)
T d2fk8a1 2 AHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGL 81 (280)
T ss_dssp GGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEE
T ss_pred CCccCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEe
Confidence 58999999999999999998754 433 478999999999999999999999999999999999999987668999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC
Q 042544 130 NNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA 209 (305)
Q Consensus 130 D~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g 209 (305)
|+|+.+++.|+++++..++...+.+...|..++ +++||.|++..+++|+++..... +++++.++||||
T Consensus 82 ~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~---------~f~~i~~~Lkpg 149 (280)
T d2fk8a1 82 TLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDD---------FFKRCFNIMPAD 149 (280)
T ss_dssp ESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHH---------HHHHHHHHSCTT
T ss_pred cchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHH---------HHHHHHhccCCC
Confidence 999999999999999999888888988887765 46899999999999998764322 699999999999
Q ss_pred CceEEEec
Q 042544 210 GFEVIWEK 217 (305)
Q Consensus 210 G~~~i~~~ 217 (305)
|.+++.+.
T Consensus 150 G~~~i~~i 157 (280)
T d2fk8a1 150 GRMTVQSS 157 (280)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEEe
Confidence 99999764
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.92 E-value=6.9e-25 Score=181.68 Aligned_cols=115 Identities=25% Similarity=0.349 Sum_probs=103.4
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
.+++.++++++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. ++++++++|++++|+++++||
T Consensus 6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~fD 83 (231)
T d1vl5a_ 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFH 83 (231)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEE
T ss_pred HHHHhcCCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccc-ccccccccccccccccccccc
Confidence 3455788999999999999999999999976 68999999999999999999888776 479999999999999999999
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+|+|..+++|++++.. +++++.++|+|||.+++.+..
T Consensus 84 ~v~~~~~l~~~~d~~~-----------~l~~~~r~LkpgG~l~i~~~~ 120 (231)
T d1vl5a_ 84 IVTCRIAAHHFPNPAS-----------FVSEAYRVLKKGGQLLLVDNS 120 (231)
T ss_dssp EEEEESCGGGCSCHHH-----------HHHHHHHHEEEEEEEEEEEEE
T ss_pred cccccccccccCCHHH-----------HHHHHHHhcCCCcEEEEEeCC
Confidence 9999999999999877 599999999999999997643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=6.9e-25 Score=182.18 Aligned_cols=117 Identities=21% Similarity=0.384 Sum_probs=107.0
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
..+++.+.++++++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. +++.++++|++++|++++
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~ 81 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDD 81 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTT
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccc-cccccccccccccccccc
Confidence 3466777889999999999999999999999976 68999999999999999999988776 479999999999999999
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+||+|+|.++++|++++.. +++++.++|||||.+++.+.
T Consensus 82 ~fD~v~~~~~l~~~~d~~~-----------~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 82 SFDIITCRYAAHHFSDVRK-----------AVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp CEEEEEEESCGGGCSCHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred ccceeeeeceeecccCHHH-----------HHHHHHHeeCCCcEEEEEEc
Confidence 9999999999999999876 69999999999999988764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.7e-23 Score=173.63 Aligned_cols=121 Identities=23% Similarity=0.265 Sum_probs=108.7
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
..+.+...+++.|+.+|||||||+|.++..+++..+++|+|||+|+.|++.|++++...++.++++|+++|+.++ ++++
T Consensus 21 ~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~ 99 (245)
T d1nkva_ 21 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANE 99 (245)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSS
T ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccC
Confidence 345567788999999999999999999999987657899999999999999999999999888899999999987 4678
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+||+|++..+++|+++... ++++++++|||||.+++.+....
T Consensus 100 ~fD~v~~~~~~~~~~d~~~-----------~l~~~~r~LkPGG~l~i~~~~~~ 141 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGFAG-----------AEELLAQSLKPGGIMLIGEPYWR 141 (245)
T ss_dssp CEEEEEEESCGGGTSSSHH-----------HHHHHTTSEEEEEEEEEEEEEET
T ss_pred ceeEEEEEehhhccCCHHH-----------HHHHHHHHcCcCcEEEEEecccc
Confidence 9999999999999999876 69999999999999999876433
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.89 E-value=5.8e-22 Score=163.29 Aligned_cols=182 Identities=15% Similarity=0.108 Sum_probs=122.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
++++.+|||||||||..+..+++. ++.+|+|+|+|+.|++.|++++...+...++++..+|+.+++ .+.+|+|++
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~ 114 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVIL 114 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEE
Confidence 457889999999999999999853 678999999999999999999888777777888888887665 467899999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCC-CCccccCCCcccc---cccccchhHHHH
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPL-PWYLPLDTSHFSL---SSFRLTSVGRFV 250 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~g~~~ 250 (305)
..+++|++..+... ++++++++|+|||.+++.+......... .+ ....+..+ ..+....+.
T Consensus 115 ~~~l~~~~~~d~~~---------~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--- 179 (225)
T d1im8a_ 115 NFTLQFLPPEDRIA---------LLTKIYEGLNPNGVLVLSEKFRFEDTKINHL---LIDLHHQFKRANGYSELEVS--- 179 (225)
T ss_dssp ESCGGGSCGGGHHH---------HHHHHHHHEEEEEEEEEEEECCCSSHHHHHH---HHHHHHHHHHHTTGGGSTTH---
T ss_pred eeeccccChhhHHH---------HHHHHHHhCCCCceeecccccccccchhhhH---HHHHHHHHHHHcCCCHHHHH---
Confidence 99999997655433 6999999999999999987433211100 00 00000000 000000000
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 251 TRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
.....+ ...+.|.+.+++..+++++||..++.. --......++|+|
T Consensus 180 --~~~~~~-~~~~~~~s~~~~~~~L~~aGF~~v~~~--~~~~~f~~~~a~k 225 (225)
T d1im8a_ 180 --QKRTAL-ENVMRTDSIETHKVRLKNVGFSQVELW--FQCFNFGSMIAVK 225 (225)
T ss_dssp --HHHHHH-HHHCCCCCHHHHHHHHHHHTCSEEEEE--EEETTEEEEEEEC
T ss_pred --HHHHHh-hcccCCCCHHHHHHHHHHcCCCceEEe--eeeCceEEEEEEC
Confidence 000011 113456777899999999999876621 1112233578876
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.1e-22 Score=167.46 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=97.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
....++.+|||||||+|.++..++.....+|+|+|+|+.|++.|++++...+. .+++|+++|+.++++++++||+|++.
T Consensus 56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~ 134 (222)
T d2ex4a1 56 PNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQ 134 (222)
T ss_dssp --CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred cCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-cccccccccccccccccccccccccc
Confidence 34567789999999999999998754467999999999999999999876654 36899999999999888999999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
.+++|+++++..+ ++++++++|+|||.+++.+..
T Consensus 135 ~~l~h~~~~~~~~---------~l~~i~~~Lk~~G~~~i~~~~ 168 (222)
T d2ex4a1 135 WVIGHLTDQHLAE---------FLRRCKGSLRPNGIIVIKDNM 168 (222)
T ss_dssp SCGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEEEE
T ss_pred cccccchhhhhhh---------HHHHHHHhcCCcceEEEEEcc
Confidence 9999999876433 699999999999999998743
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.87 E-value=5.9e-22 Score=162.99 Aligned_cols=109 Identities=26% Similarity=0.418 Sum_probs=96.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
++++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. .+.++++|+.++++++++||+|++..+
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~~~~~fD~I~~~~~ 111 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSFEDKTFDYVIFIDS 111 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred cCCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccccc--cccccccccccccccCcCceEEEEecc
Confidence 357789999999999999999975 78999999999999999998877653 578999999999999999999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
++|+++.+... +++++.++|||||.+++...+
T Consensus 112 l~~~~~~d~~~---------~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 112 IVHFEPLELNQ---------VFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GGGCCHHHHHH---------HHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhCChhHHHH---------HHHHHHHHcCcCcEEEEEEcC
Confidence 99998655432 699999999999999887654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.87 E-value=6.2e-22 Score=165.83 Aligned_cols=152 Identities=17% Similarity=0.179 Sum_probs=115.1
Q ss_pred hHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCe
Q 042544 46 NYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTS 125 (305)
Q Consensus 46 ~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~ 125 (305)
.|++...+||+......+.++|+--+.+ ...+.. ...++..+...++.+|||+|||+|.++..++.....+
T Consensus 48 ~~Y~~~~~yW~~~~~t~~~mlgg~~~~~--------~~d~~~-s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~ 118 (254)
T d1xtpa_ 48 GWYGKALEYWRTVPATVSGVLGGMDHVH--------DVDIEG-SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYAT 118 (254)
T ss_dssp CHHHHHHHHHHTSCSSHHHHTTTCGGGH--------HHHHHH-HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSE
T ss_pred hhhhchhhhhhcCchhcccccCCccccc--------hhhHHH-HHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCce
Confidence 4566777777765555555544422211 111222 2334445566678899999999999999988543678
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHH
Q 042544 126 VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEA 205 (305)
Q Consensus 126 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (305)
|+++|+|+.|++.|+++.... ..++++++|+.++++++++||+|++.++++|+++++... ++++++++
T Consensus 119 v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~~~---------~l~~~~~~ 186 (254)
T d1xtpa_ 119 TDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVK---------FFKHCQQA 186 (254)
T ss_dssp EEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHH---------HHHHHHHH
T ss_pred EEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCccceEEeeccccccchhhhHH---------HHHHHHHh
Confidence 999999999999999876432 458999999999998889999999999999999886543 69999999
Q ss_pred HHhCCceEEEecc
Q 042544 206 LKQAGFEVIWEKD 218 (305)
Q Consensus 206 L~~gG~~~i~~~~ 218 (305)
|+|||.+++.+..
T Consensus 187 LkpgG~iii~e~~ 199 (254)
T d1xtpa_ 187 LTPNGYIFFKENC 199 (254)
T ss_dssp EEEEEEEEEEEEB
T ss_pred cCCCcEEEEEecC
Confidence 9999999998743
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=3.1e-21 Score=160.64 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec-cc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI-EA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~-~~ 177 (305)
+++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++. . ..++.+|++++++++++||+|++. .+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~~~~ 112 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPFPSGAFEAVLALGDV 112 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHT----C---SCEEECCTTSCCSCTTCEEEEEECSSH
T ss_pred CCCCEEEEECCCCchhccccccc-ceEEEEeeccccccccccccc----c---cccccccccccccccccccceeeecch
Confidence 46779999999999999999976 789999999999999998852 1 247889999999999999999986 58
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++|++++.. +++++.++|||||.+++...
T Consensus 113 ~~~~~d~~~-----------~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 113 LSYVENKDK-----------AFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HHHCSCHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhhHHH-----------HHHHHHhhcCcCcEEEEEEC
Confidence 999999876 59999999999999998764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=4.3e-21 Score=160.50 Aligned_cols=114 Identities=24% Similarity=0.292 Sum_probs=94.8
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
+.......++.+|||||||||..+..+++. +.+|+|+|+|+.|++.|++++...+. +++++++|+++++++ ++||+
T Consensus 33 ~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~-~~fD~ 108 (251)
T d1wzna1 33 IFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEFDA 108 (251)
T ss_dssp HHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SCEEE
T ss_pred HHHHhcCCCCCEEEEeCCCCCccchhhccc-ceEEEEEeeccccccccccccccccc--cchheehhhhhcccc-cccch
Confidence 333456667789999999999999999986 78999999999999999999887655 599999999999886 58999
Q ss_pred EEecc-cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 172 VYAIE-ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 172 v~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
|+|.+ +++|+..++... ++++++++|+|||++++...+
T Consensus 109 I~~~~~~~~~~~~~~~~~---------~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 109 VTMFFSTIMYFDEEDLRK---------LFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EEECSSGGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEEEC
T ss_pred HhhhhhhhhcCChHHHHH---------HHHHHHHHcCCCcEEEEEecc
Confidence 99974 677775443322 699999999999999986543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=1.9e-21 Score=158.17 Aligned_cols=95 Identities=17% Similarity=0.306 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||||||+|.++..++ +++|+|+|+.|++.|+++ ++.++++|++++|+++++||+|++..++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l 101 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTI 101 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------cccccccccccccccccccccccccccc
Confidence 356689999999999887774 468999999999998873 5899999999999999999999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|++++.. +++++.++|+|||.+++.+.
T Consensus 102 ~h~~d~~~-----------~l~~~~~~L~pgG~l~i~~~ 129 (208)
T d1vlma_ 102 CFVDDPER-----------ALKEAYRILKKGGYLIVGIV 129 (208)
T ss_dssp GGSSCHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccc-----------chhhhhhcCCCCceEEEEec
Confidence 99999876 59999999999999999874
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.84 E-value=1.2e-20 Score=157.98 Aligned_cols=179 Identities=22% Similarity=0.290 Sum_probs=128.8
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
+...++..+..+|||||||+|.++..++ ..++.+++++|+ +.+++.+++++...++..+++++.+|+.+ +.+ .+||
T Consensus 72 ~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~-~~~D 148 (253)
T d1tw3a2 72 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKAD 148 (253)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEE
T ss_pred HHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hcc-cchh
Confidence 3446677788899999999999999999 457899999998 67999999999998888899999999876 333 5699
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHH
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFV 250 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 250 (305)
+|++.+++||+++.+... ++++++++|||||.++|.+........ .......+
T Consensus 149 ~v~~~~vlh~~~d~~~~~---------~L~~~~~~LkPGG~l~i~e~~~~~~~~------------------~~~~~~~~ 201 (253)
T d1tw3a2 149 AIILSFVLLNWPDHDAVR---------ILTRCAEALEPGGRILIHERDDLHENS------------------FNEQFTEL 201 (253)
T ss_dssp EEEEESCGGGSCHHHHHH---------HHHHHHHTEEEEEEEEEEECCBCGGGC------------------CSHHHHHH
T ss_pred heeeccccccCCchhhHH---------HHHHHHHhcCCCcEEEEEeccCCCCCc------------------chhHHHHh
Confidence 999999999999886543 699999999999999998743221100 00011111
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccc-cccc-eEEEEEcCC
Q 042544 251 TRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEI-FTPM-YFFLARKPQ 303 (305)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~arKp~ 303 (305)
++ ..+...+-...+.+++..+++++||.+++...... ..+. ..+++.+|+
T Consensus 202 --dl-~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li~~~PA 253 (253)
T d1tw3a2 202 --DL-RMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPA 253 (253)
T ss_dssp --HH-HHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred --hH-HHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEEEEecC
Confidence 11 11122233445678999999999998766332221 1233 346777775
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=4.4e-20 Score=148.87 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=94.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.++++....++. ++++...|+..+++ +++||+|++..+++
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF-DGEYDFILSTVVMM 106 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC-CCCEEEEEEESCGG
T ss_pred CCCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc-cccccEEEEeeeee
Confidence 3459999999999999999986 789999999999999999998887774 78999999998776 68899999999999
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
|+++..... +++++.++|+|||++++....
T Consensus 107 ~~~~~~~~~---------~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 107 FLEAQTIPG---------LIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp GSCTTHHHH---------HHHHHHHTEEEEEEEEEEEEB
T ss_pred cCCHHHHHH---------HHHHHHHHcCCCcEEEEEEec
Confidence 998776533 699999999999999987643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.81 E-value=5.7e-20 Score=153.25 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=90.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec-cc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI-EA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~-~~ 177 (305)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. +++++++|+..+++ +++||+|+|. .+
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~-~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI-NRKFDLITCCLDS 111 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC-SCCEEEEEECTTG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhccccccccCc--cceeeccchhhhcc-cccccccceeeee
Confidence 34579999999999999999986 78999999999999999999887665 58999999998876 4689999986 57
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++|+++.... ..++++++++|+|||.+++..
T Consensus 112 ~~~~~~~~~~--------~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 112 TNYIIDSDDL--------KKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GGGCCSHHHH--------HHHHHHHHTTEEEEEEEEEEE
T ss_pred eeccCCHHHH--------HHHHHHHHHhCCCCeEEEEEe
Confidence 8888776543 226999999999999998754
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.81 E-value=2.3e-20 Score=158.60 Aligned_cols=107 Identities=18% Similarity=0.336 Sum_probs=94.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.+.++.+|||||||+|.++..++.. + +.+|+|+|+|+.+++.|+++....+. +++|+++|+..++++ ++||+|++
T Consensus 24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~~-~~fD~v~~ 100 (281)
T d2gh1a1 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN-DKYDIAIC 100 (281)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS-SCEEEEEE
T ss_pred ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccccc-CCceEEEE
Confidence 4567789999999999999999864 3 57999999999999999999877654 689999999998875 57999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
..+++|++++.. +++++.++|||||.+++.+.
T Consensus 101 ~~~l~~~~d~~~-----------~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 101 HAFLLHMTTPET-----------MLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp ESCGGGCSSHHH-----------HHHHHHHTEEEEEEEEEEEC
T ss_pred ehhhhcCCCHHH-----------HHHHHHHHcCcCcEEEEEEC
Confidence 999999999876 59999999999999999874
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.80 E-value=1.4e-19 Score=151.36 Aligned_cols=113 Identities=21% Similarity=0.229 Sum_probs=94.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-CCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF-PDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~v~~~~ 176 (305)
.+++.+|||||||+|..+..+++....+|+|+|+|+.|++.|+++....+...++.+.++|+...++ .+++||+|+|.+
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 4678999999999999999998764578999999999999999998877766689999999977665 467899999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++|+.++.... ..+++++.++|+|||.+++...
T Consensus 102 ~l~~~~~~~~~~-------~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 102 SFHYAFSTSESL-------DIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp CGGGGGSSHHHH-------HHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeecCCCHHHH-------HHHHHHHhceeCCCCEEEEEec
Confidence 999986542210 1268999999999999988654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.80 E-value=6.3e-20 Score=147.60 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=96.0
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC-----------CCCeEEEEcCCCCCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV-----------DKTCNFVKADFMKMP 163 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~ 163 (305)
.+.++++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|++++...+. ...+.+.++|+.+++
T Consensus 15 ~l~~~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 15 SLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp HHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred HcCCCCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 467889999999999999999999987 89999999999999999998754322 234688999998865
Q ss_pred C-CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 164 F-PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 164 ~-~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
. ...+||+|++..+++|+++..... .++++.++|||||.+++......
T Consensus 94 ~~~~~~~D~i~~~~~l~~l~~~~~~~---------~~~~i~~~LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 94 ARDIGHCAAFYDRAAMIALPADMRER---------YVQHLEALMPQACSGLLITLEYD 142 (201)
T ss_dssp HHHHHSEEEEEEESCGGGSCHHHHHH---------HHHHHHHHSCSEEEEEEEEESSC
T ss_pred cccccceeEEEEEeeeEecchhhhHH---------HHHHHHHhcCCCcEEEEEEcccc
Confidence 3 356899999999999998764433 69999999999999888765443
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.79 E-value=1e-19 Score=145.17 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=97.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..++..+.+.++.+|||+|||+|.++..++.. ..+|+|+|+++.+++.|+++++..++.++++++++|+.+.+.+...|
T Consensus 23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~ 101 (186)
T d1l3ia_ 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (186)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCc
Confidence 45566789999999999999999999999875 67999999999999999999999999889999999998876677899
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++....++..+ .++.+.+.|+|||++++..
T Consensus 102 D~v~~~~~~~~~~~--------------~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 102 DIAVVGGSGGELQE--------------ILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp EEEEESCCTTCHHH--------------HHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEeCccccchH--------------HHHHHHHHhCcCCEEEEEe
Confidence 99999876655432 5889999999999988864
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.78 E-value=1.1e-18 Score=146.04 Aligned_cols=163 Identities=24% Similarity=0.273 Sum_probs=121.4
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
....+..+..+|||||||+|.++..++ .+|+.+++++|+ +.+++.+++++...+..+++.++.+|+.+ +.+ ..||+
T Consensus 74 ~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~ 150 (256)
T d1qzza2 74 ADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADV 150 (256)
T ss_dssp HHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEE
T ss_pred HhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchh
Confidence 334566777899999999999999999 467899999998 88999999999998888899999999876 444 45999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHH
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVT 251 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 251 (305)
|++.+++|++++.+... ++++++++|+|||.++|.+...... .. ..+.....+.
T Consensus 151 v~~~~vLh~~~d~~~~~---------lL~~i~~~LkpgG~llI~d~~~~~~---------~~--------~~~~~~~~~d 204 (256)
T d1qzza2 151 VLLSFVLLNWSDEDALT---------ILRGCVRALEPGGRLLVLDRADVEG---------DG--------ADRFFSTLLD 204 (256)
T ss_dssp EEEESCGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEECCH------------------------HHHHHHHH
T ss_pred hhccccccccCcHHHHH---------HHHHHHhhcCCcceeEEEEeccCCC---------Cc--------ccHHHHHHHH
Confidence 99999999999886644 6999999999999999987422110 00 0011111111
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCc
Q 042544 252 RNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGR 287 (305)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 287 (305)
..+ +...+-...+.+++..+++++||.+++...
T Consensus 205 ~~m---l~~~~g~~rt~~e~~~ll~~AGf~~~~~~~ 237 (256)
T d1qzza2 205 LRM---LTFMGGRVRTRDEVVDLAGSAGLALASERT 237 (256)
T ss_dssp HHH---HHHHSCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred HHH---HhhCCCccCCHHHHHHHHHHCCCceeEEEE
Confidence 111 122234556778999999999998887443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.78 E-value=3e-19 Score=146.85 Aligned_cols=102 Identities=12% Similarity=0.169 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++. ..++.++++|+.++++ +++||+|++.+++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~~-~~~fD~I~~~~vl 91 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQL-PRRYDNIVLTHVL 91 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCCC-SSCEEEEEEESCG
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhccc-----cccccccccccccccc-cccccccccccee
Confidence 35678999999999999999875 689999999999999998764 3469999999998776 5889999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHH-HHHHhCCceEEEecc
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCL-EALKQAGFEVIWEKD 218 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~gG~~~i~~~~ 218 (305)
+|++++.. .+.++. ++|+|||.+++..++
T Consensus 92 eh~~d~~~-----------~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 92 EHIDDPVA-----------LLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp GGCSSHHH-----------HHHHHHHTTEEEEEEEEEEEEC
T ss_pred EecCCHHH-----------HHHHHHHHhcCCCceEEEEeCC
Confidence 99999876 588887 789999999998754
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=3.4e-18 Score=142.17 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=99.0
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhc--CCCCCeEEEEcCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFA--GVDKTCNFVKADFMKMPF 164 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~d~~~~~~ 164 (305)
..++...+++.||++|||+|||+|.++..|++. +.++|+++|+++.+++.|+++++.. +...++.++++|+.+.++
T Consensus 85 ~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~ 164 (264)
T d1i9ga_ 85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 164 (264)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence 356677899999999999999999999999964 5689999999999999999988764 345689999999998888
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++++||+|++ ++|++.. ++.++.++|||||.+++...
T Consensus 165 ~~~~fDaV~l-----dlp~P~~-----------~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 165 PDGSVDRAVL-----DMLAPWE-----------VLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp CTTCEEEEEE-----ESSCGGG-----------GHHHHHHHEEEEEEEEEEES
T ss_pred cCCCcceEEE-----ecCCHHH-----------HHHHHHhccCCCCEEEEEeC
Confidence 9999999975 7888865 69999999999999998763
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.1e-18 Score=142.02 Aligned_cols=120 Identities=16% Similarity=0.101 Sum_probs=98.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcC----------------CCCCeE
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAG----------------VDKTCN 153 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----------------~~~~~~ 153 (305)
+++...+.++++.+|||+|||+|..+..|++. +.+|+|||+|+.+++.|+++..... ...+++
T Consensus 35 ~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 113 (229)
T d2bzga1 35 KHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS 113 (229)
T ss_dssp HHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred HHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEE
Confidence 34445567788999999999999999999986 8999999999999999988754321 124689
Q ss_pred EEEcCCCCCC-CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 154 FVKADFMKMP-FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 154 ~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
++++|+..++ ...+.||+|+...+++|++...... .++++.++|+|||.+++.....
T Consensus 114 ~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~---------~~~~~~~~LkpgG~~~l~~~~~ 171 (229)
T d2bzga1 114 LYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKC---------YADTMFSLLGKKFQYLLCVLSY 171 (229)
T ss_dssp EEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHH---------HHHHHHHTEEEEEEEEEEEEEC
T ss_pred EEEcchhhccccccCceeEEEEEEEEEeccchhhHH---------HHHHHHhhcCCcceEEEEEccc
Confidence 9999998864 5578899999999999998765433 6899999999999988776544
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=4e-18 Score=143.54 Aligned_cols=105 Identities=25% Similarity=0.386 Sum_probs=87.8
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
..+...+. .++.+|||||||+|.++..+++. ++.+++|+|+|+.|++.|+++. .++.++++|+.++|+++++
T Consensus 75 ~~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~s 147 (268)
T d1p91a_ 75 AQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTS 147 (268)
T ss_dssp HHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTC
T ss_pred HHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCC
Confidence 33444443 45679999999999999999954 6789999999999999998752 4689999999999999999
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
||+|++.++++| ++++.|+|||||.+++.+.+.
T Consensus 148 fD~v~~~~~~~~------------------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 148 MDAIIRIYAPCK------------------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp EEEEEEESCCCC------------------HHHHHHHEEEEEEEEEEEECT
T ss_pred EEEEeecCCHHH------------------HHHHHHHhCCCcEEEEEeeCC
Confidence 999998876553 778999999999999987543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.75 E-value=6.6e-18 Score=135.40 Aligned_cols=115 Identities=19% Similarity=0.219 Sum_probs=96.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCC-CeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK-TCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 168 (305)
+.+++.+.+.++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++++...++.. ++++..+|+.+ ++++++
T Consensus 42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~ 119 (194)
T d1dusa_ 42 KILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRK 119 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSC
T ss_pred HHHHHhCCcCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCC
Confidence 44566788889999999999999999999875 6799999999999999999998887743 68999999987 567889
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++..++++..+.... +++++.+.|+|||.+++..
T Consensus 120 fD~Ii~~~p~~~~~~~~~~----------~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 120 YNKIITNPPIRAGKEVLHR----------IIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEEECCCSTTCHHHHHH----------HHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEcccEEecchhhhh----------HHHHHHHhcCcCcEEEEEE
Confidence 9999998887665543221 5899999999999987753
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.74 E-value=3e-18 Score=140.44 Aligned_cols=156 Identities=14% Similarity=0.075 Sum_probs=115.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCCCCCeeEE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFPDNSFDAV 172 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v 172 (305)
.++++||.+|||+|||+|..+..+++. +++.|+|+|+|+.|++.+++++... +++.++.+|.... ++.+..+|++
T Consensus 69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccccccceeE
Confidence 467899999999999999999999964 6689999999999999998876543 4688888888763 3456778888
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHH
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTR 252 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 252 (305)
++...+++..+... ++.++.+.|||||++++.....+.....+ + .
T Consensus 146 ~i~~~~~~~~~~~~-----------~l~~~~r~LKpgG~~~i~~k~~~~d~~~~------------------~-~----- 190 (230)
T d1g8sa_ 146 VIYEDVAQPNQAEI-----------LIKNAKWFLKKGGYGMIAIKARSIDVTKD------------------P-K----- 190 (230)
T ss_dssp EEEECCCSTTHHHH-----------HHHHHHHHEEEEEEEEEEEEGGGTCSSSC------------------H-H-----
T ss_pred EeeccccchHHHHH-----------HHHHHHHhcccCceEEEEeeccccCCCCC------------------H-H-----
Confidence 88777777766655 59999999999999988764322111000 0 0
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccce-EEEEEc
Q 042544 253 NMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMY-FFLARK 301 (305)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~arK 301 (305)
. ..++....|+++||++++......|..-+ +++|+-
T Consensus 191 ~-------------~~~e~~~~L~~aGF~ive~idL~py~~~H~~vvg~y 227 (230)
T d1g8sa_ 191 E-------------IFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp H-------------HHHHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEEE
T ss_pred H-------------HHHHHHHHHHHcCCEEEEEecCCCCcCCeEEEEEEe
Confidence 0 01356788899999988865556665444 677764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.6e-19 Score=151.37 Aligned_cols=167 Identities=14% Similarity=-0.035 Sum_probs=109.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCC--------------------------
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKT-------------------------- 151 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-------------------------- 151 (305)
..++.+|||||||+|.++..++.....+|+|+|+|+.|++.|++++........
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 456789999999999998877754345899999999999999998765432110
Q ss_pred --e-EEEEc----CCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCC
Q 042544 152 --C-NFVKA----DFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSP 224 (305)
Q Consensus 152 --~-~~~~~----d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~ 224 (305)
+ ..... +....++++++||+|++.++++|++.....- ..+++++.++|||||.+++.+..-.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~-------~~~l~~i~~~LkpGG~li~~~~~~~---- 197 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAY-------RAALCNLASLLKPGGHLVTTVTLRL---- 197 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHH-------HHHHHHHHTTEEEEEEEEEEEESSC----
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHH-------HHHHHHHHhccCCCcEEEEEEeccc----
Confidence 0 11112 2222456788999999999999997432110 1268999999999999999763211
Q ss_pred CCCccccCCCcccccccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcc--------cccccceE
Q 042544 225 LPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRK--------EIFTPMYF 296 (305)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~ 296 (305)
.++..... .......+.+++..+++++||.+++-... ....+..+
T Consensus 198 -~~~~~~~~--------------------------~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~ 250 (257)
T d2a14a1 198 -PSYMVGKR--------------------------EFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCC 250 (257)
T ss_dssp -CEEEETTE--------------------------EEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEE
T ss_pred -ccceeccc--------------------------cccccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEE
Confidence 11111110 01112345678999999999976552111 12344567
Q ss_pred EEEEcC
Q 042544 297 FLARKP 302 (305)
Q Consensus 297 ~~arKp 302 (305)
++|||-
T Consensus 251 v~arKk 256 (257)
T d2a14a1 251 IVARKK 256 (257)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 888874
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=7.3e-18 Score=136.86 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=93.9
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
...+++.+.++++.+|||||||+|..+..+++. +.++|+++|+++.+++.|+++++..+.. ++.++++|.......+
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~~~~~~ 142 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPEF 142 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHHccccc
Confidence 345666889999999999999999999999864 4579999999999999999999888764 7889999998866667
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|++..+++++|+. +.+.|||||++++..
T Consensus 143 ~~fD~I~~~~~~~~~p~~-----------------l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 143 SPYDVIFVTVGVDEVPET-----------------WFTQLKEGGRVIVPI 175 (213)
T ss_dssp CCEEEEEECSBBSCCCHH-----------------HHHHEEEEEEEEEEB
T ss_pred cchhhhhhhccHHHhHHH-----------------HHHhcCCCcEEEEEE
Confidence 889999999998876643 567899999998853
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.72 E-value=1.9e-17 Score=136.71 Aligned_cols=110 Identities=19% Similarity=0.292 Sum_probs=92.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
.+++..+++.||++|||+|||+|.++..+++. +.++|+++|+++.+++.|+++++..+...++++.++|+.+. ++++
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~ 153 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQ 153 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSC
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccc
Confidence 34556789999999999999999999999964 56899999999999999999998876667899999999875 5678
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|++ +++++.. +++++.++|||||.+++..
T Consensus 154 ~fD~V~l-----d~p~p~~-----------~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 154 MYDAVIA-----DIPDPWN-----------HVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp CEEEEEE-----CCSCGGG-----------SHHHHHHTEEEEEEEEEEE
T ss_pred eeeeeee-----cCCchHH-----------HHHHHHHhcCCCceEEEEe
Confidence 8999975 5677755 6999999999999999865
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=5.1e-17 Score=136.33 Aligned_cols=166 Identities=15% Similarity=0.089 Sum_probs=109.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCC--------------------------
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK-------------------------- 150 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-------------------------- 150 (305)
+...+.+|||||||+|.++...+.....+|+|+|+|+.|++.+++++......-
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 445688999999999988766664335699999999999999998765432110
Q ss_pred ---CeEEEEcCCCC------CCCCCCCeeEEEecccccccCC-hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 151 ---TCNFVKADFMK------MPFPDNSFDAVYAIEATCHAPD-AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 151 ---~~~~~~~d~~~------~~~~~~~fD~v~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
...+...|+.. .+.++++||+|++.++++|++. .... ..+++++.++|||||.+++....-.
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~--------~~~l~~~~~~LkPGG~li~~~~~~~ 202 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASF--------QRALDHITTLLRPGGHLLLIGALEE 202 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHH--------HHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHH--------HHHHHHHHHHcCCCCEEEEecccCC
Confidence 01234455543 2244578999999999999963 2221 1269999999999999998763211
Q ss_pred CCCCCCCccccCCCcccccccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcc----------cc
Q 042544 221 PDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRK----------EI 290 (305)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~ 290 (305)
.++...... ......+.+++..++.++||+++.-... ..
T Consensus 203 -----~~~~~~~~~--------------------------~~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~~~~~~~~~d 251 (263)
T d2g72a1 203 -----SWYLAGEAR--------------------------LTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDD 251 (263)
T ss_dssp -----CEEEETTEE--------------------------EECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBC
T ss_pred -----cccccCCcc--------------------------cccCCCCHHHHHHHHHHCCCeEEEEEEeeccCcccccccc
Confidence 111111110 0112346688999999999987642111 01
Q ss_pred cccceEEEEEc
Q 042544 291 FTPMYFFLARK 301 (305)
Q Consensus 291 ~~~~~~~~arK 301 (305)
+..+.+++|||
T Consensus 252 ~~~~~~~~ArK 262 (263)
T d2g72a1 252 VKGVFFAWAQK 262 (263)
T ss_dssp CCEEEEEEEEE
T ss_pred cceEEEEEEEe
Confidence 34456899998
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.69 E-value=1.1e-16 Score=128.57 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=91.7
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEecc
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYAIE 176 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~~ 176 (305)
++..|||||||+|.++..+| ..|+..++|+|+++.++..|.+++...++. ++.++++|+..+. ++++++|.|++.+
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-CchhcccchhhhhcccCchhhhcccccc
Confidence 45689999999999999999 468899999999999999999999998885 8999999998754 7889999999877
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+....... ..+-...+++++.++|||||.+.+.+
T Consensus 108 p~P~~k~~h~k---~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 108 SDPWPKKRHEK---RRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCCSGGGGG---GSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccccchhhhcc---hhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 76654433210 01111237999999999999998865
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.6e-17 Score=136.68 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC--CCCCCCCeeEEE---
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK--MPFPDNSFDAVY--- 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~v~--- 173 (305)
.+|.+|||||||+|..+..+++....+|+|+|+|+.+++.|+++....+ .++.++..++.. .++++++||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeecc
Confidence 4788999999999999999997645799999999999999999877653 357788887664 356788999987
Q ss_pred --ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 174 --AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 174 --~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+...++|+++... +++++.++|||||.+++.
T Consensus 130 ~~~~~~~~~~~~~~~-----------~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 130 YPLSEETWHTHQFNF-----------IKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCCBGGGTTTHHHHH-----------HHHTHHHHEEEEEEEEEC
T ss_pred cccccccccccCHHH-----------HHHHHHHHcCCCcEEEEE
Confidence 4556777777665 599999999999998774
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=1.4e-16 Score=132.98 Aligned_cols=111 Identities=25% Similarity=0.330 Sum_probs=96.5
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
..++...+++.||.+|||+|||+|.++..+++. ++++|+++|+++.+++.|+++++..++..++.+...|+.. .++.
T Consensus 92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~ 170 (266)
T d1o54a_ 92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDE 170 (266)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSC
T ss_pred HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cccc
Confidence 356777899999999999999999999999964 5689999999999999999999999987889999999765 3556
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..||.|+ .+++++.. +++++.++|||||.+++..
T Consensus 171 ~~~D~V~-----~d~p~p~~-----------~l~~~~~~LKpGG~lv~~~ 204 (266)
T d1o54a_ 171 KDVDALF-----LDVPDPWN-----------YIDKCWEALKGGGRFATVC 204 (266)
T ss_dssp CSEEEEE-----ECCSCGGG-----------THHHHHHHEEEEEEEEEEE
T ss_pred cceeeeE-----ecCCCHHH-----------HHHHHHhhcCCCCEEEEEe
Confidence 7799886 47888865 6999999999999999865
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=4.8e-17 Score=138.67 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=89.3
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCC---CeEEEEcCCCC----C
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK---TCNFVKADFMK----M 162 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~~~~~~d~~~----~ 162 (305)
+++...+...++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++....+... ...+...++.. +
T Consensus 46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T d1xvaa_ 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 124 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc
Confidence 44555555567789999999999999999986 7899999999999999999877654321 23455555543 2
Q ss_pred CCCCCCeeEEEecc-cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 163 PFPDNSFDAVYAIE-ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 163 ~~~~~~fD~v~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|. .++||+|+|.. +++|++++..... ....+++++.++|||||.+++...
T Consensus 125 ~~-~~~fd~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 125 PA-GDGFDAVICLGNSFAHLPDSKGDQS----EHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp CC-TTCEEEEEECSSCGGGSCCTTSSSH----HHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CC-CCCceEEEEecCchhhcCCcccChH----HHHHHHHHHHHHcCcCcEEEEeec
Confidence 33 46799999864 8999986521000 001269999999999999998654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=8.8e-17 Score=131.22 Aligned_cols=110 Identities=22% Similarity=0.212 Sum_probs=91.5
Q ss_pred HHHHHHc--CCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEEcCCCC
Q 042544 90 HFLALQL--GLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGV----DKTCNFVKADFMK 161 (305)
Q Consensus 90 ~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~ 161 (305)
..+++.+ .+++|.+|||||||+|..+..+++. +.++|+++|+++.+++.|++++...+. ..++.++++|+..
T Consensus 64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~ 143 (224)
T d1i1na_ 64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 143 (224)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence 3445555 6789999999999999999999864 467999999999999999999876654 2478999999988
Q ss_pred CCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 162 MPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 162 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+.++++||+|++..++.++|+. +.+.|||||++++..
T Consensus 144 ~~~~~~~fD~I~~~~~~~~ip~~-----------------l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 144 GYAEEAPYDAIHVGAAAPVVPQA-----------------LIDQLKPGGRLILPV 181 (224)
T ss_dssp CCGGGCCEEEEEECSBBSSCCHH-----------------HHHTEEEEEEEEEEE
T ss_pred ccchhhhhhhhhhhcchhhcCHH-----------------HHhhcCCCcEEEEEE
Confidence 77777899999999988876643 567899999999854
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.67 E-value=8.1e-17 Score=130.01 Aligned_cols=108 Identities=18% Similarity=0.105 Sum_probs=85.1
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
.++++||.+|||+|||+|..+..+++. +.++|+|+|+|+.|++.++++++.. .++.++.+|+...+.....+|.+.
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccccccccceEE
Confidence 467899999999999999999999964 5679999999999999999988764 479999999987554444444443
Q ss_pred ec-ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AI-EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+. ..+.|..+... ++.++.+.|||||.+++..
T Consensus 128 ~v~~~~~~~~~~~~-----------~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 128 LIYQDIAQKNQIEI-----------LKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EEEECCCSTTHHHH-----------HHHHHHHHEEEEEEEEEEE
T ss_pred EEEecccChhhHHH-----------HHHHHHHHhccCCeEEEEE
Confidence 22 33444444433 6999999999999998865
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=1.8e-17 Score=137.47 Aligned_cols=101 Identities=21% Similarity=0.282 Sum_probs=83.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
..++.+|||+|||+|.++..+++. +++|+|+|+|+.|++.|+++++..++. ++++++|+.+ .+++++||+|+++..
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~-~~~~~~fD~V~ani~ 193 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEA-ALPFGPFDLLVANLY 193 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHH-HGGGCCEEEEEEECC
T ss_pred cCccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEeccccc-cccccccchhhhccc
Confidence 357899999999999999988775 789999999999999999999988874 6789998875 345688999998754
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+.+.+ .++++.++|||||.++++.
T Consensus 194 ~~~l~~--------------l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 194 AELHAA--------------LAPRYREALVPGGRALLTG 218 (254)
T ss_dssp HHHHHH--------------HHHHHHHHEEEEEEEEEEE
T ss_pred cccHHH--------------HHHHHHHhcCCCcEEEEEe
Confidence 443221 4788999999999999864
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.5e-16 Score=134.73 Aligned_cols=109 Identities=18% Similarity=0.083 Sum_probs=84.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-----c--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEE--EEcCCCC------C
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-----S--STSVTGLNNNEYQITRGKELNRFAGVDKTCNF--VKADFMK------M 162 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-----~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~--~~~d~~~------~ 162 (305)
.++..+|||||||+|.++..++.. + ..+++|+|+|+.|++.+++++.......++.+ .+.+++. .
T Consensus 38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (280)
T d1jqea_ 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE 117 (280)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence 345568999999999998887642 2 24789999999999999998765433334444 3433321 2
Q ss_pred CCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 163 PFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 163 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+.++++||+|++.++++|++++.. +++++.++|+|||.+++...
T Consensus 118 ~~~~~~fD~I~~~~~l~~~~d~~~-----------~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 118 KKELQKWDFIHMIQMLYYVKDIPA-----------TLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp SSSCCCEEEEEEESCGGGCSCHHH-----------HHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCCceeEEEEccceecCCCHHH-----------HHHHHHhhCCCCCEEEEEEe
Confidence 456789999999999999999876 69999999999999988764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.63 E-value=5.3e-16 Score=125.97 Aligned_cols=106 Identities=24% Similarity=0.247 Sum_probs=88.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..++..+.+.++.+|||||||+|+.+..+++. ..+|+++|+++.+++.|+++.... .++.++++|......+.++|
T Consensus 60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pf 135 (224)
T d1vbfa_ 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPY 135 (224)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhH
Confidence 34566789999999999999999999998876 789999999999999999876542 58999999987644456789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++..++.++|+. +.+.|+|||++++..
T Consensus 136 D~Iiv~~a~~~ip~~-----------------l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 136 DRVVVWATAPTLLCK-----------------PYEQLKEGGIMILPI 165 (224)
T ss_dssp EEEEESSBBSSCCHH-----------------HHHTEEEEEEEEEEE
T ss_pred HHHHhhcchhhhhHH-----------------HHHhcCCCCEEEEEE
Confidence 999998888776643 457799999998853
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=7.3e-16 Score=131.90 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=91.6
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhc----------CCCCCeEEEEc
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFA----------GVDKTCNFVKA 157 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~----------~~~~~~~~~~~ 157 (305)
.++...+++.||.+|||+|||+|.++..|++. +.++|+++|+++.+++.|+++++.. +...++.+.++
T Consensus 88 ~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~ 167 (324)
T d2b25a1 88 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 167 (324)
T ss_dssp HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec
Confidence 45667889999999999999999999999964 5689999999999999999988753 33468999999
Q ss_pred CCCCCC--CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 158 DFMKMP--FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 158 d~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
|+.... +++..||+|+. ++|++.. .+.++.++|||||.+++..+++
T Consensus 168 di~~~~~~~~~~~fD~V~L-----D~p~P~~-----------~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 168 DISGATEDIKSLTFDAVAL-----DMLNPHV-----------TLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp CTTCCC-------EEEEEE-----CSSSTTT-----------THHHHGGGEEEEEEEEEEESSH
T ss_pred chhhcccccCCCCcceEee-----cCcCHHH-----------HHHHHHHhccCCCEEEEEeCCH
Confidence 998753 45678999975 5677654 5999999999999999876543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=7.3e-16 Score=133.33 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=88.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||||||+|.++..+++....+|+|+|.|+ ++..|++.....+...++.++++|+.++++++++||+|++..+.
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 47899999999999999988876446999999996 67889999888888889999999999999989999999998777
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
+++....... ..+..+.++|||||+++
T Consensus 116 ~~~~~e~~~~--------~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMD--------TVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHH--------HHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHH--------HHHHHHHhccCCCeEEE
Confidence 6665543211 14777789999999875
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=1.6e-15 Score=123.55 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=83.8
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC---CCCCCCCe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK---MPFPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~f 169 (305)
.++++||.+|||+|||+|..+..+++. +.++|+|+|+|+.|++.++++++.. .++..+..|... .+.....+
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCE
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCcccccccccce
Confidence 467899999999999999999999975 4689999999999999999887653 457888888865 23345678
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++. +.+..+... ++.++.+.|||||++++..
T Consensus 145 D~i~~d--~~~~~~~~~-----------~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 145 DVIFED--VAQPTQAKI-----------LIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp EEEEEC--CCSTTHHHH-----------HHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEE--ccccchHHH-----------HHHHHHHhcccCCeEEEEE
Confidence 888753 333333333 6999999999999998865
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.61 E-value=1.4e-15 Score=122.62 Aligned_cols=109 Identities=24% Similarity=0.252 Sum_probs=94.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..++..+.+.++.+|||||||+|+.+..+++..+.+|+++|.++.+++.|++++...+. .++.++++|......+.++|
T Consensus 68 a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~~~pf 146 (215)
T d1jg1a_ 68 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKAPY 146 (215)
T ss_dssp HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcccCcc
Confidence 45566789999999999999999999999976577899999999999999999999887 48999999998755557889
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|.|++..++.++|+. +.+.|+|||++++..
T Consensus 147 D~Iiv~~a~~~ip~~-----------------l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 147 DVIIVTAGAPKIPEP-----------------LIEQLKIGGKLIIPV 176 (215)
T ss_dssp EEEEECSBBSSCCHH-----------------HHHTEEEEEEEEEEE
T ss_pred eeEEeecccccCCHH-----------------HHHhcCCCCEEEEEE
Confidence 999999888887764 456789999998854
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.61 E-value=5e-15 Score=118.68 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEecc
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYAIE 176 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~~ 176 (305)
....|||||||+|.++..+| ..|+..++|+|+++.++..|.+++...++. ++.++.+|+..+. ++++++|.|++.+
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhccCCceehhcccc
Confidence 45689999999999999999 458899999999999999999999988875 8999999998754 6788999998654
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.-.+...... ...+-...+++.+.++|+|||.+.+.+
T Consensus 110 PdPw~K~~h~---krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 110 SDPWPKKRHE---KRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCCSGGGG---GGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccccchhhh---hhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 3332222111 001111236999999999999998865
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.60 E-value=8.1e-15 Score=120.83 Aligned_cols=171 Identities=17% Similarity=0.110 Sum_probs=119.1
Q ss_pred HHHHcC-CCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 92 LALQLG-LKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 92 l~~~~~-~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+..... .....+|||||||+|.++..++ ++|+.+++.+|+ |..++ ..+..++++++.+|+.+ +.| ..
T Consensus 72 l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~-~~p--~~ 140 (244)
T d1fp1d2 72 MLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFA-SVP--QG 140 (244)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTT-CCC--CE
T ss_pred HHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCCCCeEEecCCccc-ccc--cc
Confidence 333444 4566899999999999999998 568999999998 44443 23445789999999976 444 35
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHH
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRF 249 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 249 (305)
|++++.+++|++++.+... .++++++.|+|||.++|.+..+......+. .......
T Consensus 141 D~~~l~~vLh~~~de~~~~---------iL~~~~~aL~pgg~llI~e~v~~~~~~~~~---------------~~~~~~~ 196 (244)
T d1fp1d2 141 DAMILKAVCHNWSDEKCIE---------FLSNCHKALSPNGKVIIVEFILPEEPNTSE---------------ESKLVST 196 (244)
T ss_dssp EEEEEESSGGGSCHHHHHH---------HHHHHHHHEEEEEEEEEEEEEECSSCCSSH---------------HHHHHHH
T ss_pred eEEEEehhhhhCCHHHHHH---------HHHHHHHHcCCCcEEEEEEEEecCCCCCch---------------HHHHHHH
Confidence 9999999999999988755 699999999999999998865542211110 0001111
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 250 VTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
+...+ +-..+-...+.+++..+++++||..++-. .....+..++-+||
T Consensus 197 ~d~~m---~~~~~g~ert~~e~~~ll~~AGF~~v~v~-~~~~~~~~viE~~K 244 (244)
T d1fp1d2 197 LDNLM---FITVGGRERTEKQYEKLSKLSGFSKFQVA-CRAFNSLGVMEFYK 244 (244)
T ss_dssp HHHHH---HHHHSCCCEEHHHHHHHHHHTTCSEEEEE-EEETTTEEEEEEEC
T ss_pred HHHHH---HhhCCCcCCCHHHHHHHHHHcCCCceEEE-ecCCCCEEEEEEeC
Confidence 11111 11223344567899999999999877632 23445667888887
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.3e-15 Score=131.05 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=87.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||||||+|.++..+++....+|+|+|.|+.+ ..+++.+...+..+++.++++|+.+++++.++||+|++....
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 4788999999999999998887634689999999754 677777888888889999999999999888999999998776
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
+++....... .++..+.++|+|||.++-
T Consensus 111 ~~l~~e~~~~--------~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 111 YCLFYESMLN--------TVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTBTCCHH--------HHHHHHHHHEEEEEEEES
T ss_pred eeeccHHHHH--------HHHHHHHhcCCCCeEEEe
Confidence 6665543221 157888999999998763
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.8e-15 Score=127.87 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=90.3
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+.......++.+|||||||+|.++..+++....+|+|+|.|+.+.. +++.....+...++.++++|+.+++.++++|
T Consensus 25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~ 103 (311)
T d2fyta1 25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 103 (311)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccc
Confidence 334444455678999999999999999988764469999999998864 6666677777789999999999999888999
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
|+|++....++........ ..+....++|+|||.++-
T Consensus 104 D~Ivse~~~~~~~~e~~~~--------~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 104 DVIISEWMGYFLLFESMLD--------SVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEEEECCCBTTBTTTCHHH--------HHHHHHHHHEEEEEEEES
T ss_pred eEEEEeeeeeecccccccH--------HHHHHHHhcCCCCcEEec
Confidence 9999987766665543321 145566789999998764
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.7e-16 Score=134.27 Aligned_cols=116 Identities=12% Similarity=0.271 Sum_probs=91.0
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhc-------CC-CCCeEEEEcCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFA-------GV-DKTCNFVKADF 159 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~-------~~-~~~~~~~~~d~ 159 (305)
...++..+.++++.+|||||||+|..+..++.. +..+++|+|+|+.+++.|++..... |. ..+++++++|+
T Consensus 140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~ 219 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 219 (328)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence 445666889999999999999999999999854 4458999999999999998765432 22 34799999999
Q ss_pred CCCCCCCCCe--eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 160 MKMPFPDNSF--DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 160 ~~~~~~~~~f--D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+.++.+..+ |+|++ +.+.|.++... .+.++.+.|||||.+++..
T Consensus 220 ~~~~~~~~~~~advi~~-~~~~f~~~~~~-----------~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 220 LSEEWRERIANTSVIFV-NNFAFGPEVDH-----------QLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp TSHHHHHHHHHCSEEEE-CCTTTCHHHHH-----------HHHHHHTTCCTTCEEEESS
T ss_pred cccccccccCcceEEEE-cceecchHHHH-----------HHHHHHHhCCCCcEEEEec
Confidence 9887766555 45554 55666666544 5999999999999998754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.50 E-value=1e-14 Score=118.39 Aligned_cols=109 Identities=22% Similarity=0.254 Sum_probs=86.9
Q ss_pred HHHHHc--CCCCCCeEEEEcCCCChHHHHHHhhc-------CCeEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEEc
Q 042544 91 FLALQL--GLKSGQKVLDVGCGIGGPLREIAQFS-------STSVTGLNNNEYQITRGKELNRFAGV----DKTCNFVKA 157 (305)
Q Consensus 91 ~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~-------~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~ 157 (305)
.++..+ .+.++.+|||||||||+.+..+++.. ..+|+++|+++.+++.|++++...+. -.++.+.++
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 344455 68899999999999999999888542 24899999999999999887654321 137999999
Q ss_pred CCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 158 DFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 158 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|......+.++||+|++..++.++|+. +.+.|+|||++++..
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~~-----------------l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPTE-----------------LINQLASGGRLIVPV 190 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCHH-----------------HHHTEEEEEEEEEEE
T ss_pred ccccccccccceeeEEEEeechhchHH-----------------HHHhcCCCcEEEEEE
Confidence 998865567889999999988876653 567899999998854
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.4e-13 Score=114.65 Aligned_cols=115 Identities=14% Similarity=0.295 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
..+.+|||+|||+|..++.++ ..+..+|+++|+|+.+++.|++++...++. +++++++|+.+ ++++++||+|+++-.
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~~d~~~-~~~~~~fDlIvsNPP 184 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFS-ALAGQQFAMIVSNPP 184 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTG-GGTTCCEEEEEECCC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-cceeeeccccc-ccCCCceeEEEecch
Confidence 456789999999999999998 567899999999999999999999999884 79999999976 455679999999743
Q ss_pred ccc-------------cCChhhhhhcCCCCC-cccHHHHHHHHHhCCceEEE
Q 042544 178 TCH-------------APDAAEIEIGDGLPD-IRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 178 l~~-------------~~~~~~~~~~~~~~~-~~~l~~~~~~L~~gG~~~i~ 215 (305)
.-. -|......-..|+.. .+.+.++.+.|+|||.+++.
T Consensus 185 Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 185 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 211 111100000000000 12567777889999998885
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.43 E-value=3.9e-13 Score=111.60 Aligned_cols=103 Identities=19% Similarity=0.163 Sum_probs=86.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.+|.+|||+|||+|.+++.++....++|+++|+++.+++.+++++...++.++++++++|+.+++. .+.||.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC
Confidence 4689999999999999999999765679999999999999999999999998889999999988754 578999986421
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.... ++.++.+.|++||.+.+..
T Consensus 184 ----~~~~~-----------~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 184 ----VRTHE-----------FIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp ----SSGGG-----------GHHHHHHHEEEEEEEEEEE
T ss_pred ----CchHH-----------HHHHHHhhcCCCCEEEEEe
Confidence 12222 6889999999999887654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.42 E-value=1.2e-12 Score=107.76 Aligned_cols=160 Identities=14% Similarity=0.155 Sum_probs=108.9
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
...+|||||||+|.++..++ ++|+.+++.+|+ |..++ ..+..++++++.+|+.+ +.+ .+|++++.+++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~-~~p--~aD~~~l~~vL 148 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFT-SIP--NADAVLLKYIL 148 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTT-CCC--CCSEEEEESCG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHH-------hCcccCceEEEecCccc-CCC--CCcEEEEEeec
Confidence 44689999999999999998 568899999998 44443 23456789999999986 333 47999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhC---CceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHH
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQA---GFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMV 255 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g---G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 255 (305)
|++++.+..+ .++++++.|+|| |.++|.+..+......+. ........ .+.
T Consensus 149 Hdw~d~~~~~---------iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~---------------~~~~~~~~--dl~ 202 (244)
T d1fp2a2 149 HNWTDKDCLR---------ILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ---------------VTQIKLLM--DVN 202 (244)
T ss_dssp GGSCHHHHHH---------HHHHHHHHHSGGGCCCEEEEEECEECTTTSCHH---------------HHHHHHHH--HHH
T ss_pred ccCChHHHHH---------HHHHHHHHcCcccCCcEEEEEEeecCCCCCCch---------------HHHHHHHH--HHH
Confidence 9999998765 699999999999 778887755432111110 00000000 000
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEE
Q 042544 256 KALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLAR 300 (305)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ar 300 (305)
+-..+-...+.+++..+++++||+.++-. ....+..++-+|
T Consensus 203 --m~~~~G~ert~~e~~~ll~~AGf~~~~i~--~~~~~~svIE~~ 243 (244)
T d1fp2a2 203 --MACLNGKERNEEEWKKLFIEAGFQHYKIS--PLTGFLSLIEIY 243 (244)
T ss_dssp --GGGGTCCCEEHHHHHHHHHHTTCCEEEEE--EEETTEEEEEEE
T ss_pred --HHhCCCcCCCHHHHHHHHHHcCCceEEEE--ECCCCeEEEEEe
Confidence 01122234467899999999999887732 333344455443
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=1.8e-13 Score=119.88 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=82.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcC-------C-CCCeEE-EEcCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAG-------V-DKTCNF-VKADF 159 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~-------~-~~~~~~-~~~d~ 159 (305)
..++..+++.++.+|||||||+|..+..+|.. +..+|+|||+|+.|++.|+++++..+ . ...+.+ ..+++
T Consensus 206 ~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f 285 (406)
T d1u2za_ 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 285 (406)
T ss_dssp HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeech
Confidence 44566789999999999999999999999954 34589999999999999998876432 1 112233 33444
Q ss_pred CCCCCCC---CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 160 MKMPFPD---NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 160 ~~~~~~~---~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
...+..+ ..+|+|++.. ++|.++... .+.++.+.|||||.+++.+.
T Consensus 286 ~~~~~~d~~~~~adVV~inn-~~f~~~l~~-----------~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 286 VDNNRVAELIPQCDVILVNN-FLFDEDLNK-----------KVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp TTCHHHHHHGGGCSEEEECC-TTCCHHHHH-----------HHHHHHTTCCTTCEEEESSC
T ss_pred hhccccccccccceEEEEec-ccCchHHHH-----------HHHHHHHhcCCCcEEEEecc
Confidence 3322111 2457777643 455555544 59999999999999887553
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.35 E-value=8.7e-12 Score=102.54 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=103.0
Q ss_pred CCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
....+|||||||+|.++..++ ++|+.+++++|+.+ .++ ......+++++.+|+.+ +.|. .|+++...+
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~-------~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~v 148 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIE-------DAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWI 148 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTT-------TCCCCTTEEEEECCTTT-CCCC--CSCEECSSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhh-------hcccCCceEEecccccc-cCCC--cceEEEEEE
Confidence 345789999999999999999 56889999999954 332 22345689999999976 4443 477888999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHHHH
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKA 257 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 257 (305)
+|+.++.+... .++++++.|+|||.++|.+..+......+. ...... ..++...
T Consensus 149 lh~~~d~~~~~---------iL~~~~~al~pgg~~li~d~~~~~~~~~~~----------------~~~~~~-~~d~~ml 202 (243)
T d1kyza2 149 CHDWSDEHCLK---------FLKNCYEALPDNGKVIVAECILPVAPDSSL----------------ATKGVV-HIDVIML 202 (243)
T ss_dssp STTSCHHHHHH---------HHHHHHHHCCSSSCEEEEECEECSSCCCCH----------------HHHHHH-HHHHHHH
T ss_pred eecCCHHHHHH---------HHHHHHHhcCCCceEEEEEEEecCCCCCch----------------hhHHHH-HHHHHHH
Confidence 99999887755 699999999999999998865442211110 000000 0111111
Q ss_pred HHHhccCCCchHHHHHHHHHHHHHHhc
Q 042544 258 LEFVGLAPKGSQRVQDFLEKAAEGLAA 284 (305)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (305)
....+-...+.+++..+++++||+.++
T Consensus 203 ~~~~~g~ert~~e~~~ll~~AGf~~vk 229 (243)
T d1kyza2 203 AHNPGGKERTQKEFEDLAKGAGFQGFK 229 (243)
T ss_dssp HHCSSCCCEEHHHHHHHHHHHCCSCEE
T ss_pred hhCCCCCcCCHHHHHHHHHHcCCCcEE
Confidence 111123345668999999999998876
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.34 E-value=6.2e-13 Score=101.54 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l 178 (305)
+|.+|||+|||||.++..++.+...+|+++|.++.+++.+++++...+..++++++++|+.. ++...++||+|++.-..
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 68899999999999999888654469999999999999999999999888889999999876 34456889999874221
Q ss_pred cccCChhhhhhcCCCCCcccHHHHH--HHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCL--EALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~~~i~~ 216 (305)
.. .. . ...+..+. ++|+|+|.+++..
T Consensus 94 ~~--~~-~---------~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 94 AK--ET-I---------VATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp HH--HH-H---------HHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cc--ch-H---------HHHHHHHHHCCCcCCCeEEEEEe
Confidence 10 00 0 01344443 4578999888764
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=2.4e-13 Score=116.74 Aligned_cols=117 Identities=20% Similarity=0.202 Sum_probs=85.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCCCeeEEE
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDNSFDAVY 173 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v~ 173 (305)
+.++.+|||+|||+|.++..++.....+|+++|+|+.+++.+++++...|+..+++++++|+.+. +....+||+|+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 46789999999999999999987644689999999999999999999999987899999998752 23457899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.-....-........... -...+..+.++|+|||.+++.+
T Consensus 223 ~DpP~~~~~~~~~~~~~~~--y~~l~~~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRA--YFNVNFAGLNLVKDGGILVTCS 263 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHH--HHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCccccCCHHHHHHHHHH--HHHHHHHHHHHcCCCcEEEEEe
Confidence 7432111111100000000 0114677778899999998875
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.29 E-value=6.1e-11 Score=94.44 Aligned_cols=80 Identities=16% Similarity=0.080 Sum_probs=65.7
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
..+--.|.+|||+|||||.++..++.....+|+|+|+++.+++.+++++...+. +.+++.+|+..+ +++||+|++
T Consensus 41 ~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~---~~~fD~Vi~ 115 (201)
T d1wy7a1 41 SLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF---NSRVDIVIM 115 (201)
T ss_dssp HTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC---CCCCSEEEE
T ss_pred hcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh---CCcCcEEEE
Confidence 344446889999999999999988876446999999999999999999887764 588999998775 467999998
Q ss_pred ccccc
Q 042544 175 IEATC 179 (305)
Q Consensus 175 ~~~l~ 179 (305)
.-...
T Consensus 116 nPP~~ 120 (201)
T d1wy7a1 116 NPPFG 120 (201)
T ss_dssp CCCCS
T ss_pred cCccc
Confidence 65543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=6.8e-13 Score=113.49 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCCCeeEEEe
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDNSFDAVYA 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v~~ 174 (305)
.+|.+|||++||+|.++..++.. +.+|+++|+|+.+++.|++++...|+. +++++++|+.++ +...++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 46899999999999999998864 689999999999999999999999984 799999998762 334578999997
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.-.-.............. -...+..+.++|+|||.+++.+.
T Consensus 222 DpP~~~~~~~~~~~~~~~--~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRA--YKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCCSCCSTTSHHHHHHH--HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCccccchHHHHHHHHH--HHHHHHHHHHHcCCCCEEEEEeC
Confidence 532111111100000000 01147778889999999988763
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=4.9e-12 Score=99.80 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=87.2
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP 165 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 165 (305)
+...+.+.++..+||++||+|..+..+++ .++++|+|+|.++.|++.|++++...+ .++.++++++.++. +.
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~~ 92 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLG 92 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHcC
Confidence 34467888999999999999999999985 478999999999999999999887653 57999999987642 44
Q ss_pred CCCeeEEEeccccc--ccCChhh-hhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATC--HAPDAAE-IEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~--~~~~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.++||.|+.-..+. ++.+... ... .-..+..+.++|+|||.+++.+
T Consensus 93 ~~~vdgIl~DlGvSs~Qld~~~r~~~~-----~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 93 IEKVDGILMDLGVSTYQLKGENRELEN-----LKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp CSCEEEEEEECSCCHHHHHTSHTHHHH-----HHHHHHHGGGGEEEEEEEEEEE
T ss_pred CCCcceeeeccchhHhhhhhhhccchh-----HHHHHHHHHHhcCCCCeeeeec
Confidence 57899998654321 1111110 000 0114777888999999988865
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=1.5e-12 Score=105.00 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-----CCCCCeeE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-----FPDNSFDA 171 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~fD~ 171 (305)
+..+|||||||+|..+..+++. .+++|+++|+++.+++.|++++...|+.++++++.+|..+. + +..++||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 4579999999999999999953 36899999999999999999999999988999999998762 2 34568999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+.-.. .+.... ...+.+..++|+|||++++.
T Consensus 136 ifiD~~----~~~~~~--------~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 136 VFLDHW----KDRYLP--------DTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EEECSC----GGGHHH--------HHHHHHHTTCEEEEEEEEES
T ss_pred eeeccc----cccccc--------HHHHHHHhCccCCCcEEEEe
Confidence 987532 111110 00255667789999976663
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=1.2e-11 Score=102.68 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l 178 (305)
+..+|||+|||+|..+..+++.+.++|+++|+|+.+++.|++++...+...++.+..+|+.+. +...++||+|+++--
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP- 188 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP- 188 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC-
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccc-
Confidence 346899999999999999988788999999999999999999999999888889999998763 223478999998642
Q ss_pred cccCChh----------hhhhcCCCCCcccHHH-HHHHHHhCCceEEEe
Q 042544 179 CHAPDAA----------EIEIGDGLPDIRSTRK-CLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~----------~~~~~~~~~~~~~l~~-~~~~L~~gG~~~i~~ 216 (305)
+++... ...+..|-.-+.++++ +.+.|+|||.+++..
T Consensus 189 -YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 189 -YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp -CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred -ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 111110 1111122222223333 456789999888754
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.3e-11 Score=99.55 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=84.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC-----CCCCCe
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP-----FPDNSF 169 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~-----~~~~~f 169 (305)
.....+|||||||+|..+..+++. .+++|+.+|+++...+.|++.+...|..++++++.+|+.+ ++ ..+++|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 345679999999999999999953 3689999999999999999999999999899999999865 21 235789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|+.-.- .+... ..++.+.+.|+|||.+++..
T Consensus 137 D~ifiD~d----k~~y~----------~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 137 DVAVVDAD----KENCS----------AYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EEEEECSC----STTHH----------HHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEEeCC----HHHHH----------HHHHHHHHHhcCCcEEEEeC
Confidence 99987432 22111 15888999999999998865
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.21 E-value=6.8e-12 Score=97.50 Aligned_cols=105 Identities=15% Similarity=0.078 Sum_probs=74.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC--CCCCCCCeeEEEec
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK--MPFPDNSFDAVYAI 175 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~v~~~ 175 (305)
+.++.+|||+|||+|.+++.++.. +++|+++|.++.+++.++++++..++..++....+|... ......+||+|++.
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 457889999999999999988776 789999999999999999999998886554444444321 12345789999875
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHH--HHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCL--EALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~~~i~~ 216 (305)
-.... .... .+.++. .+|+|||.+++..
T Consensus 118 PPY~~-~~~~------------~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 118 PPYAM-DLAA------------LFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp CCTTS-CTTH------------HHHHHHHHTCEEEEEEEEEEE
T ss_pred ccccc-CHHH------------HHHHHHHcCCcCCCeEEEEEe
Confidence 32221 1111 233333 4689999888764
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.21 E-value=5.7e-11 Score=93.73 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.|.+|||+|||+|.++..++.....+|+|+|+++.+++.|++++ .+++++++|+.+++ ++||+|+++-.
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l~---~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEIS---GKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhcC---CcceEEEeCcc
Confidence 68899999999999998877664468999999999999999874 35899999998763 67999998644
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.17 E-value=1.8e-11 Score=102.99 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=80.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCC-CeEEEEcCCCCC----CCCCCCeeEE
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK-TCNFVKADFMKM----PFPDNSFDAV 172 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~----~~~~~~fD~v 172 (305)
..++.+|||++||||.+++.++.. +++|++||.|+.+++.|+++++..++.. +++++++|+.++ ....+.||+|
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 456789999999999999998875 7899999999999999999999888754 689999999763 1224689999
Q ss_pred Eeccc-ccccCC------hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEA-TCHAPD------AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~-l~~~~~------~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++--- +..-+. .... ...+..+.++|+|||.+++..
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~--------~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHL--------PLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHH--------HHHHHHHHHTBCTTCCEEEEE
T ss_pred EECCCcccccccchhHHHHHHH--------HHHHHHHHHhcCCCCCEEEEe
Confidence 97321 100000 0000 013566778889999876654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.14 E-value=1.8e-11 Score=104.29 Aligned_cols=113 Identities=13% Similarity=0.054 Sum_probs=83.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCC----CCCCCCeeE
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKM----PFPDNSFDA 171 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~----~~~~~~fD~ 171 (305)
.+.+|.+|||++||+|.+++.++.....+|+++|+|+.+++.++++++..++. .+++++++|+.+. .-..++||+
T Consensus 141 ~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 141 GSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred HhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 34578999999999999999887653458999999999999999999988874 5799999999652 123468999
Q ss_pred EEeccc-c----cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEA-T----CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~-l----~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|++--. + ......... -...+..+.++|+|||.+++..
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~-------~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKD-------YHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp EEECCCCC-----CCCCHHHH-------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEcChhhccchhHHHHHHHH-------HHHHHHHHHHHcCCCCEEEEEe
Confidence 997421 0 000010000 0115777888999999999876
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.12 E-value=1.1e-10 Score=92.44 Aligned_cols=108 Identities=12% Similarity=0.093 Sum_probs=76.6
Q ss_pred CCCCeEEEEcCCCChHHHHHH----hhc-----CCeEEEEcCCHHHHHHHHHHHH------------------hcCC---
Q 042544 99 KSGQKVLDVGCGIGGPLREIA----QFS-----STSVTGLNNNEYQITRGKELNR------------------FAGV--- 148 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~----~~~-----~~~v~gvD~s~~~l~~a~~~~~------------------~~~~--- 148 (305)
.+..+|+++|||||.-...+| +.. ..+|+|+|+|+.+++.|++..- ..+.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 345699999999998443332 221 2479999999999999974320 0000
Q ss_pred ---------CCCeEEEEcCCCCC-CCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 149 ---------DKTCNFVKADFMKM-PFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 149 ---------~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
...+.+...+.... +.+.+.||+|+|.+++.++.++...+ +++++.+.|+|||++++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~---------vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQED---------ILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHH---------HHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHH---------HHHHHHHHhCCCcEEEEe
Confidence 01244555555542 23457899999999999999886644 699999999999998885
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.1e-10 Score=94.31 Aligned_cols=80 Identities=9% Similarity=0.053 Sum_probs=67.5
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC------CCCCCCeeEE
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM------PFPDNSFDAV 172 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~fD~v 172 (305)
+..+|||+|||+|..+..++ +.++.+++|+|+|+.+++.|+++++..++..++.+++.+.... ...+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 44699999999999999998 5578999999999999999999999999988999988766542 1235689999
Q ss_pred Eeccccc
Q 042544 173 YAIEATC 179 (305)
Q Consensus 173 ~~~~~l~ 179 (305)
+|+--..
T Consensus 141 vsNPPY~ 147 (250)
T d2h00a1 141 MCNPPFF 147 (250)
T ss_dssp EECCCCC
T ss_pred EecCccc
Confidence 9976544
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.06 E-value=2e-10 Score=89.87 Aligned_cols=114 Identities=18% Similarity=0.093 Sum_probs=83.2
Q ss_pred HHHHHcC-CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C---CC
Q 042544 91 FLALQLG-LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P---FP 165 (305)
Q Consensus 91 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~---~~ 165 (305)
.+...+. ..++.+|||++||||.++.+.+.....+|+++|.++.+++.+++++...+...+++++++|+..+ . -.
T Consensus 31 alFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~ 110 (182)
T d2fhpa1 31 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE 110 (182)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhccc
Confidence 3444443 44789999999999999999987645689999999999999999999888877899999998752 1 23
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHH--HHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE--ALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~~~i~~ 216 (305)
..+||+|++---... .+... .+..+.. +|+++|.+++..
T Consensus 111 ~~~fDlIflDPPY~~-~~~~~-----------~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 111 KLQFDLVLLDPPYAK-QEIVS-----------QLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp TCCEEEEEECCCGGG-CCHHH-----------HHHHHHHTTCEEEEEEEEEEE
T ss_pred CCCcceEEechhhhh-hHHHH-----------HHHHHHHCCCCCCCEEEEEEc
Confidence 457999986432211 11111 3555543 588999887754
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.04 E-value=6.3e-11 Score=95.77 Aligned_cols=103 Identities=16% Similarity=0.233 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC------CCCCCee
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP------FPDNSFD 170 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~------~~~~~fD 170 (305)
...+|||||+++|..+..+++. .+++|+.+|+++...+.|++.+...|..++++++.+++.+ ++ ...++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 4579999999999999999953 3689999999999999999999999998899999999975 22 1246899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+.-..- .. . ...++.+.+.|+|||.+++..
T Consensus 139 ~iFiDa~k----~~-y---------~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 139 FIFVDADK----DN-Y---------LNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EEEECSCS----TT-H---------HHHHHHHHHHBCTTCCEEEET
T ss_pred EEEeccch----hh-h---------HHHHHHHHhhcCCCcEEEEcc
Confidence 99974321 11 1 115888899999999998864
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=2.8e-10 Score=89.14 Aligned_cols=104 Identities=11% Similarity=-0.017 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l 178 (305)
.+.+|||++||||.++.+.+.+...+|+.||.++..++.+++++...+. .++.++.+|+.. +......||+|++.-..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcCcc
Confidence 5789999999999999998876456899999999999999999988765 468999999876 33346789999975432
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHH--HHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLE--ALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~~~i~~ 216 (305)
.. ..... .+..+.+ +|+++|.+++..
T Consensus 122 ~~-~~~~~-----------~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 122 RR-GLLEE-----------TINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp ST-TTHHH-----------HHHHHHHTTCEEEEEEEEEEE
T ss_pred cc-chHHH-----------HHHHHHHCCCCCCCeEEEEEe
Confidence 21 01111 2444433 478888888764
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.97 E-value=1.6e-09 Score=87.88 Aligned_cols=81 Identities=15% Similarity=0.250 Sum_probs=66.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+...+.+.++.+|||||||+|.+|..+++. +.+|+++|+++.+++..+++... .++++++++|+.+++++....
T Consensus 11 ~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~---~~n~~i~~~D~l~~~~~~~~~ 86 (235)
T d1qama_ 11 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQFKFPKNQS 86 (235)
T ss_dssp HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhc---ccchhhhhhhhhhcccccccc
Confidence 44555678889999999999999999999986 78999999999999998887543 358999999999987765443
Q ss_pred eEEEe
Q 042544 170 DAVYA 174 (305)
Q Consensus 170 D~v~~ 174 (305)
..|++
T Consensus 87 ~~vv~ 91 (235)
T d1qama_ 87 YKIFG 91 (235)
T ss_dssp CEEEE
T ss_pred ceeee
Confidence 44443
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=6.3e-09 Score=90.13 Aligned_cols=102 Identities=22% Similarity=0.325 Sum_probs=82.0
Q ss_pred ccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCC
Q 042544 71 HFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK 150 (305)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~ 150 (305)
.+.+.-.-+......+...+.+.+.+.+.++.+|||+-||+|.++..|++. ..+|+|+|+++.+++.|++++...++.
T Consensus 183 ~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~- 260 (358)
T d1uwva2 183 TFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ- 260 (358)
T ss_dssp ECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-
T ss_pred EECCchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccc-
Confidence 344433334455566677777888888888999999999999999999976 689999999999999999999988875
Q ss_pred CeEEEEcCCCCC-C---CCCCCeeEEEe
Q 042544 151 TCNFVKADFMKM-P---FPDNSFDAVYA 174 (305)
Q Consensus 151 ~~~~~~~d~~~~-~---~~~~~fD~v~~ 174 (305)
++.|+.+|..+. + .....+|+|+.
T Consensus 261 n~~~~~~~~~~~~~~~~~~~~~~d~vil 288 (358)
T d1uwva2 261 NVTFYHENLEEDVTKQPWAKNGFDKVLL 288 (358)
T ss_dssp SEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred cceeeecchhhhhhhhhhhhccCceEEe
Confidence 899999998762 2 22466899986
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.83 E-value=1.5e-09 Score=90.39 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc---------CCCCCeEEEEcCCCCCCCCCCCe
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA---------GVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
++..+||-||+|.|..+..+.+++..+|+.||+++.+++.|++..... ...++++++.+|+..+--.+++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 455799999999999999988766679999999999999999865321 12468999999987632235789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++-..-. ...+ ..+-...+++.+++.|+|+|.+++..
T Consensus 151 DvIi~D~~~~-~~~~------~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 151 DVIIADSTDP-VGPA------KVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEECCCC-C-----------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEeCCCC-CCCc------ccccCHHHHHhhHhhcCCCceEEEec
Confidence 9998633211 1111 11222347999999999999988754
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.80 E-value=3.6e-10 Score=92.29 Aligned_cols=89 Identities=19% Similarity=0.321 Sum_probs=69.9
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
.+...+.+.++.+|||||||+|.+|..+++. +.+|+++|+++.+++.++++.. ...+++++++|+.+++++...++
T Consensus 20 kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~~~~~~~~~ 95 (245)
T d1yuba_ 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhh---hccchhhhhhhhhccccccceee
Confidence 3455778889999999999999999999986 7899999999999887766543 23579999999999888877777
Q ss_pred EEEecccccccCCh
Q 042544 171 AVYAIEATCHAPDA 184 (305)
Q Consensus 171 ~v~~~~~l~~~~~~ 184 (305)
.|+++.. .|+..+
T Consensus 96 ~vv~NLP-Y~Ist~ 108 (245)
T d1yuba_ 96 KIVGNIP-YHLSTQ 108 (245)
T ss_dssp EEEEECC-SSSCHH
T ss_pred eEeeeee-hhhhHH
Confidence 6665433 344433
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.78 E-value=2.8e-08 Score=84.87 Aligned_cols=123 Identities=14% Similarity=0.171 Sum_probs=85.2
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh------cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF------SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF 164 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 164 (305)
.+...+...++.+|||.|||+|.++..+.++ ....++|+|+++.++..|+.+....+. ...+.++|.... .
T Consensus 108 l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~ 184 (328)
T d2f8la1 108 LLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLAN-L 184 (328)
T ss_dssp HHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSC-C
T ss_pred HHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhccccccc-c
Confidence 3344556677889999999999999888642 234899999999999999988776654 467778877653 3
Q ss_pred CCCCeeEEEecccccccCChhhhhhc-----CCCC--CcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIG-----DGLP--DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~-----~~~~--~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+...||+|++.-.+............ .+.. ...++..+.+.|+|||.+.+..
T Consensus 185 ~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 185 LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence 45789999998665433332211100 0000 1225888999999999887764
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=5.3e-08 Score=76.97 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
++.+|+|+|||.|.-++.+| ..|..+++.+|.+..-+...++.....++. ++++++..++++. ++.+||+|++..+.
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~-~~~~fD~V~sRA~~ 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP-SEPPFDGVISRAFA 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC-CCSCEEEEECSCSS
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhc-cccccceehhhhhc
Confidence 45799999999999999999 568899999999999999999988888885 7999999999864 35689999986542
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
. ... ++.-+...++++|.+++.
T Consensus 143 ~----~~~-----------ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 143 S----LND-----------MVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp S----HHH-----------HHHHHTTSEEEEEEEEEE
T ss_pred C----HHH-----------HHHHHHHhcCCCcEEEEE
Confidence 2 222 366667778899998875
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.69 E-value=5.2e-08 Score=82.29 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=89.3
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
...+.+.+|.+|||++||.|.=+..++.. ..+.++++|+++.-+...++++.+.+.. ++.+...|...++..+..||
T Consensus 109 ~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~~~~~~~fD 187 (313)
T d1ixka_ 109 PVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFD 187 (313)
T ss_dssp HHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEE
T ss_pred hhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-cccccccccccccccccccc
Confidence 34577889999999999999998888853 3578999999999999999999998874 67777788776665567899
Q ss_pred EEEe------cccccccCChhhhhhcCC---C--CCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 171 AVYA------IEATCHAPDAAEIEIGDG---L--PDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 171 ~v~~------~~~l~~~~~~~~~~~~~~---~--~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
.|++ .+++..-|+......... + .....+.++.+.|||||.++.++..+.
T Consensus 188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 9986 223333332210000000 0 002358888899999999999886544
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.67 E-value=1.1e-08 Score=86.49 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhc--C--CCCCeEEEEcCCCCC-CCCCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFA--G--VDKTCNFVKADFMKM-PFPDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~--~~~~~~~~~~d~~~~-~~~~~~fD~v 172 (305)
+...+||.||+|.|..+..+.+. +..+|++||+++.+++.|++.+... + -.++++++.+|+... .-.+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 34579999999999999999865 4579999999999999999876432 1 246899999999873 2235789999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++-..=.+..+... ..+-...+++.+++.|+|||.+++..
T Consensus 156 i~D~~dp~~~~~~~----~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDLTDPVGEDNPA----RLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEECCCCBSTTCGG----GGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcccccchh----hhhhhHHHHHHHHHhcCCCceEEEec
Confidence 95432111111000 00111236899999999999988854
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=9.3e-08 Score=78.99 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=68.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+...+.+.++.+|||||+|+|.+|..+++. +.+|+++|+++.+++..++.........+++++.+|+...+++. +
T Consensus 11 ~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~--~ 87 (278)
T d1zq9a1 11 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF--F 87 (278)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC--C
T ss_pred HHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh--h
Confidence 44555678888999999999999999999986 68999999999999999988766555568999999998876543 4
Q ss_pred eEEEec
Q 042544 170 DAVYAI 175 (305)
Q Consensus 170 D~v~~~ 175 (305)
+.|+++
T Consensus 88 ~~vV~N 93 (278)
T d1zq9a1 88 DTCVAN 93 (278)
T ss_dssp SEEEEE
T ss_pred hhhhcc
Confidence 566653
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.65 E-value=3.7e-08 Score=76.75 Aligned_cols=105 Identities=17% Similarity=0.087 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCC-CeEEEEcCCCC---CCCCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK-TCNFVKADFMK---MPFPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~---~~~~~~~fD~v~~~ 175 (305)
.+.+|||+.||||.++++.+.+...+|+.||.+...++..+++++..+... ...+...|+.. ......+||+|++-
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 578999999999999999997755699999999999999999999887644 45666666543 22335679999875
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHH--HHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLE--ALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~~~i~~ 216 (305)
--... +... ..+..+.. +|+++|.+++..
T Consensus 123 PPY~~--~~~~----------~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 123 PPFHF--NLAE----------QAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCSSS--CHHH----------HHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhHhh--hhHH----------HHHHHHHHhCCcCCCcEEEEEe
Confidence 33221 1111 13444443 578888888864
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.63 E-value=1.1e-07 Score=76.25 Aligned_cols=118 Identities=18% Similarity=0.180 Sum_probs=80.5
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP 165 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (305)
..++|...+...++.+|||.|||+|.++..+.+. ....++|+|+++..+.. .....++++|......
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~~- 75 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLWEP- 75 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCCC-
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhcccc-
Confidence 3466777888889999999999999999888743 24689999999876432 2346788888876543
Q ss_pred CCCeeEEEecccccccCChhh-------------hhh---cCCCCC--cccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAE-------------IEI---GDGLPD--IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~-------------~~~---~~~~~~--~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...||+|++............ ... ..+..+ ..++..+.+.|++||.+.+..
T Consensus 76 ~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 76 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 478999998765433221100 000 001111 135778889999999988765
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.58 E-value=4.3e-08 Score=81.73 Aligned_cols=110 Identities=21% Similarity=0.213 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEEcCCCC-CCCCCCCeeEEEe
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAG---VDKTCNFVKADFMK-MPFPDNSFDAVYA 174 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~-~~~~~~~fD~v~~ 174 (305)
...+||-||.|.|..+..+.+++ ..+|+++|+++.+++.|++...... ..++++++.+|+.. +.-.++.||+|++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 45799999999999999998754 5789999999999999998764321 24689999999976 3334578999996
Q ss_pred cccccc-cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCH-APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
-..-.. .+.. .+-...+++.+++.|+|+|.+++..
T Consensus 169 D~~dp~~~~~~-------~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 169 DSTDPTAGQGG-------HLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EC-----------------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCcCchh-------hhccHHHHHHHHhhcCCCcEEEEec
Confidence 432111 1110 1112337999999999999988863
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.56 E-value=8.1e-08 Score=79.44 Aligned_cols=111 Identities=23% Similarity=0.208 Sum_probs=82.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhc-C--CCCCeEEEEcCCCC-CCCCCCCeeEEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFA-G--VDKTCNFVKADFMK-MPFPDNSFDAVY 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~-~--~~~~~~~~~~d~~~-~~~~~~~fD~v~ 173 (305)
++..+||-||.|.|..+..+.+++ ..+|+.+|+++.+++.|++..... + -.++++++.+|+.. +.-.+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 345799999999999999999754 579999999999999999976432 1 24689999999876 223457899998
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.-..-..-+ ...+-...+++.+++.|+|+|.++...
T Consensus 154 ~D~~~p~~~-------~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEPVGP-------AVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSCCSC-------CCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCc-------chhhccHHHHHHHHhhcCCCceEEEec
Confidence 753211101 111223447999999999999988753
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=4.5e-07 Score=75.75 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=66.6
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC---CCCe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP---DNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~f 169 (305)
.+.+.++.+|||++||.|.-+..++.. ....|+++|+++.-++..++++.+.|.. ++.+...|...++.. .+.|
T Consensus 89 ~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~~~f 167 (293)
T d2b9ea1 89 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEV 167 (293)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTE
T ss_pred ccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhccccccccee
Confidence 567889999999999999999998853 3579999999999999999999999875 689999998765422 2569
Q ss_pred eEEEe
Q 042544 170 DAVYA 174 (305)
Q Consensus 170 D~v~~ 174 (305)
|.|++
T Consensus 168 D~VL~ 172 (293)
T d2b9ea1 168 HYILL 172 (293)
T ss_dssp EEEEE
T ss_pred eEEee
Confidence 99996
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=1.3e-07 Score=73.21 Aligned_cols=114 Identities=20% Similarity=0.233 Sum_probs=82.1
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CCCC
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FPDN 167 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 167 (305)
...+.+.++..++|+.||.|..+..+.+. +++|+|+|.++.++..+++. ...++.+++.++.++. ...+
T Consensus 11 l~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 11 LDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp HHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTTCS
T ss_pred HHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcCCC
Confidence 34567889999999999999999999875 78999999999999988764 2357999999987642 3346
Q ss_pred CeeEEEeccccc--ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATC--HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|.|+.-..+. ++.++... +. .....+......|++||.+++..
T Consensus 85 ~vdgIl~DLGvSs~qld~~~re-~~---~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 85 RVDGILADLGVSSFHLDDPSDE-LN---ALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp CEEEEEEECSCCHHHHHCGGTH-HH---HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEEccCCHHHhhcchHH-HH---HHHHHHHHHHhhhCCCCeEEEEe
Confidence 799998754322 22222110 00 00014777788899999988865
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.55 E-value=8.7e-08 Score=79.87 Aligned_cols=111 Identities=23% Similarity=0.235 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhc---CCCCCeEEEEcCCCCC--CCCCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFA---GVDKTCNFVKADFMKM--PFPDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~d~~~~--~~~~~~fD~v 172 (305)
+...+||=||.|.|..+..+.+++ ..+|+.+|+++.+++.+++..... ...++++++.+|+... ..++++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 345799999999999999999764 468999999999999999865321 1256899999998762 2345689999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.-..-..-+... +-...+++.+++.|+|||.+++..
T Consensus 159 i~D~~dp~~~~~~-------L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 159 IVDSSDPIGPAKE-------LFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EECCCCTTSGGGG-------GGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchh-------hCCHHHHHHHHHhcCCCcEEEEec
Confidence 9643211111111 112336999999999999999864
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.54 E-value=3.4e-08 Score=82.74 Aligned_cols=111 Identities=22% Similarity=0.205 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEEcCCCCC-CCCCCCeeEEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAG---VDKTCNFVKADFMKM-PFPDNSFDAVY 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v~ 173 (305)
+...+||-||.|.|..+..+.+++ ..+|+.+|+++.+++.+++...... -.++++++.+|+..+ .-..++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 345799999999999999999764 3699999999999999999764321 136899999999762 22457899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+-..-..-+ ...+-...+++.+++.|+|||.++...
T Consensus 185 ~D~~dp~~~-------~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 185 TDSSDPVGP-------AESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp ECCC--------------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCc-------chhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 743211111 111222347999999999999998863
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=9e-08 Score=79.50 Aligned_cols=111 Identities=23% Similarity=0.177 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhc---CCCCCeEEEEcCCCC-CCCCCCCeeEEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFA---GVDKTCNFVKADFMK-MPFPDNSFDAVY 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~d~~~-~~~~~~~fD~v~ 173 (305)
+...+||-||.|.|..+..+.++ +..+|+.+|+++.+++.|++..... -..++++++.+|+.. +.-..++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 45579999999999999999976 3579999999999999999876421 125689999999876 223457899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+-.. . +.. ....+-...+++.+++.|+|||.+++..
T Consensus 157 ~D~~-~----p~~--~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TDSS-D----PMG--PAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EECC------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCC-C----CCC--cccccccHHHHHHHHHhcCCCCeEEEec
Confidence 7432 1 110 0111222347999999999999998864
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=1.5e-07 Score=78.45 Aligned_cols=127 Identities=16% Similarity=0.163 Sum_probs=86.8
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCee
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSFD 170 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 170 (305)
...+.+.++.+|||+++|.|.=+..+++. .++.|+++|+++.-+...++++.+.|.. ++.....|..... ...+.||
T Consensus 95 ~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~fd 173 (284)
T d1sqga2 95 MTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFD 173 (284)
T ss_dssp HHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCEE
T ss_pred ccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhccccccc
Confidence 34578889999999999999999999854 3578999999999999999999998875 3444444433211 2346799
Q ss_pred EEEe------cccccccCChhhhhhcCC---CC--CcccHHHHHHHHHhCCceEEEeccCC
Q 042544 171 AVYA------IEATCHAPDAAEIEIGDG---LP--DIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 171 ~v~~------~~~l~~~~~~~~~~~~~~---~~--~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
.|++ .+++..-|+.....-... +. ....+.++.+.|+|||.++.++..+.
T Consensus 174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 9995 234444444311000000 00 02257788888999999999886544
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=1.9e-07 Score=76.10 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=58.8
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF 164 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 164 (305)
+.+...+.+.++..|||||||+|.+|..+++. +.+|+++|+++.+++..+++.. ..++++++.+|+..+++
T Consensus 11 ~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 11 DSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGGCCH
T ss_pred HHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhh---hccchhHHhhhhhhhcc
Confidence 44555677888999999999999999999986 7899999999999988876432 23579999999988654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.41 E-value=1.7e-07 Score=75.41 Aligned_cols=101 Identities=23% Similarity=0.257 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC---CCCCeeEEEe
Q 042544 99 KSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF---PDNSFDAVYA 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v~~ 174 (305)
.++.+|+|||+|.|.-++.++ ..|+.+++-+|.+..-+...+......++. ++.+++..++.+.. ..++||+|++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEEE
Confidence 356799999999999999999 568899999999999999888888888885 78899988876432 1367999998
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..+. .... ++.-+...++++|.+++.
T Consensus 148 RAva----~l~~-----------ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 148 RAVA----RLSV-----------LSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp ECCS----CHHH-----------HHHHHGGGEEEEEEEEEE
T ss_pred hhhh----CHHH-----------HHHHHhhhcccCCEEEEE
Confidence 7432 2222 366667778888887774
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.37 E-value=1.2e-06 Score=77.17 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=88.7
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--------------CCeEEEEcCCHHHHHHHHHHHHhcCCC-CCe
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--------------STSVTGLNNNEYQITRGKELNRFAGVD-KTC 152 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------------~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~ 152 (305)
..+++...+.+.++.+|+|.+||+|.++..+.++. ...+.|+|+++.+...|+.+..-.+.. ...
T Consensus 150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 34566667777888999999999999998876431 135999999999999999887766653 245
Q ss_pred EEEEcCCCCCCCCCCCeeEEEecccccccCChhhhh----hcCC--CCCcccHHHHHHHHHhCCceEEEe
Q 042544 153 NFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIE----IGDG--LPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 153 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~----~~~~--~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+...|....+ +...||+|++.-.+.......... ...+ -....++..+...|++||.+.+..
T Consensus 230 ~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 230 PIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp SEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 67788877643 457899999976653322111000 0000 011337899999999999887764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=1.1e-06 Score=67.84 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=70.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------CCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------FPDN 167 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~ 167 (305)
++++.+|||+||++|.|+..+.+. ....++++|+.+.. . -+++.++++|+.... ....
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~-i~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------P-IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------C-CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------c-cCCceEeecccccchhhhhhhhhccCc
Confidence 468899999999999999998853 35799999986511 1 246899999997621 2346
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|++-.+..--.+....+...---....+.-+.++|++||.+++..
T Consensus 88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 7999998765433222211000000000124666778999999999975
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.07 E-value=3.2e-06 Score=72.68 Aligned_cols=104 Identities=14% Similarity=-0.050 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCC--------------CeEEEEcCCCCCC-
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDK--------------TCNFVKADFMKMP- 163 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--------------~~~~~~~d~~~~~- 163 (305)
++.+|||..||||..++.++. .+..+|++.|+|+..++.++++++..+... .+.+.+.|+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 567999999999999998874 445699999999999999999998776532 3556666654422
Q ss_pred CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 164 FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 164 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
-....||+|..-- +..+. .+++.+.+.++.||.+.++..+
T Consensus 125 ~~~~~fDvIDiDP----fGs~~-----------pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSPM-----------EFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HSTTCEEEEEECC----SSCCH-----------HHHHHHHHHEEEEEEEEEEECC
T ss_pred hhcCcCCcccCCC----CCCcH-----------HHHHHHHHHhccCCEEEEEecC
Confidence 1235699886432 12222 2699999999999999997644
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.03 E-value=1.5e-06 Score=69.74 Aligned_cols=98 Identities=12% Similarity=0.182 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-----cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CCCCCee
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-----SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FPDNSFD 170 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 170 (305)
++.+|||||++.|..+..++.. ..++|+++|+.+....... ....+++++++|..+.. +....+|
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~I~~i~gDs~~~~~~~~l~~~~~d 153 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAHP 153 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccceeeeecccccHHHHHHHHhcCCC
Confidence 3469999999999988877642 3689999999765432211 11357999999986532 2345678
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+.-.. |....... .+ ++...|++||++++.+
T Consensus 154 lIfID~~--H~~~~v~~----------~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 154 LIFIDNA--HANTFNIM----------KW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EEEEESS--CSSHHHHH----------HH-HHHHTCCTTCEEEECS
T ss_pred EEEEcCC--cchHHHHH----------HH-HHhcccCcCCEEEEEc
Confidence 8775433 32222221 23 3567899999999865
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=1.4e-05 Score=71.93 Aligned_cols=128 Identities=11% Similarity=-0.007 Sum_probs=81.6
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc-------------------CCeEEEEcCCHHHHHHHHHHHHhcCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS-------------------STSVTGLNNNEYQITRGKELNRFAGVD 149 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~~v~gvD~s~~~l~~a~~~~~~~~~~ 149 (305)
.++|...+.+.++.+|+|.+||+|.++....++. ...++|+|+++.+...|+.++.-.+..
T Consensus 153 v~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~ 232 (524)
T d2ar0a1 153 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 232 (524)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred hHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc
Confidence 3556667778888999999999999998765421 126899999999999998877655543
Q ss_pred CC----eEEEEcCCCCCC-CCCCCeeEEEecccccccCChhhhhh-c--CCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 150 KT----CNFVKADFMKMP-FPDNSFDAVYAIEATCHAPDAAEIEI-G--DGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 150 ~~----~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~-~--~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.. ..+...+....+ .....||+|+++--+..-........ . ..-....++..+.+.|++||++.+..
T Consensus 233 ~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 233 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 21 123344433211 23467999998765432221110000 0 00011337999999999999987764
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.91 E-value=3e-05 Score=61.70 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=65.8
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCCCCCCCCCe
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMKMPFPDNSF 169 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~f 169 (305)
+.+...+.++.+|+|+|||.|.|+..++.. ....|.|+++--...+. -......+. +-+.+... |+.. .++...
T Consensus 58 ~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~--l~~~~~ 133 (257)
T d2p41a1 58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFF--IPPERC 133 (257)
T ss_dssp HHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTT--SCCCCC
T ss_pred HHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHh--cCCCcC
Confidence 334446678889999999999999999854 23578888873211000 000000000 11233322 2222 346789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|.|+|-.+- .-+++...+. ..++.++-+.++|+|||-+++..
T Consensus 134 D~vlcDm~e-ss~~~~vd~~----Rtl~vLela~~wLk~gg~FvvKV 175 (257)
T d2p41a1 134 DTLLCDIGE-SSPNPTVEAG----RTLRVLNLVENWLSNNTQFCVKV 175 (257)
T ss_dssp SEEEECCCC-CCSSHHHHHH----HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEeeCCC-CCCCchhhhh----hHHHHHHHHHHHcccCCEEEEEE
Confidence 999987543 2333321110 01335777779999999888864
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.84 E-value=2.7e-05 Score=62.57 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=66.3
Q ss_pred HHHHHHcCCCCC--CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC--------CCCeEEEEcCC
Q 042544 90 HFLALQLGLKSG--QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV--------DKTCNFVKADF 159 (305)
Q Consensus 90 ~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--------~~~~~~~~~d~ 159 (305)
+.+...++++++ .+|||+-||.|..+..++.. +++|+++|-++.+....+..+..... ..+++++++|.
T Consensus 76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds 154 (250)
T d2oyra1 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence 455566666554 48999999999999999986 89999999999877766655443221 13789999998
Q ss_pred CC-CCCCCCCeeEEEecccccc
Q 042544 160 MK-MPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 160 ~~-~~~~~~~fD~v~~~~~l~~ 180 (305)
.+ +.-..++||+|+.--++.+
T Consensus 155 ~~~L~~~~~~~DvIYlDPMFp~ 176 (250)
T d2oyra1 155 LTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHhccCCCCCEEEECCCCcc
Confidence 66 3333567999998665544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.40 E-value=0.00036 Score=52.56 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=66.5
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---------C
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---------F 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~ 164 (305)
..+++++.+||-+||| .|..+..+++..+++|+++|.++.-++.+++. +. ...+...+..... .
T Consensus 21 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga--~~~~~~~~~~~~~~~~~~~~~~~ 94 (170)
T d1e3ja2 21 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA--DVTLVVDPAKEEESSIIERIRSA 94 (170)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC--SEEEECCTTTSCHHHHHHHHHHH
T ss_pred HhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC--cEEEeccccccccchhhhhhhcc
Confidence 4578899999999998 56677777766789999999999999988773 22 1222221111100 0
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+.+|+|+-.- ..+. .+..+.++|+++|.+++.-
T Consensus 95 ~g~g~D~vid~~-----g~~~------------~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 95 IGDLPNVTIDCS-----GNEK------------CITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SSSCCSEEEECS-----CCHH------------HHHHHHHHSCTTCEEEECS
T ss_pred cccCCceeeecC-----CChH------------HHHHHHHHHhcCCceEEEe
Confidence 124578887431 1221 4888899999999988854
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.33 E-value=0.0001 Score=55.77 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=66.1
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCC-CCCCCCCeeE
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMK-MPFPDNSFDA 171 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~-~~~~~~~fD~ 171 (305)
..+++++.+||-+||| .|..+..+++..+++|+++|.++..++.+++. |.. .++.. +-.+ ..-..+.+|+
T Consensus 22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~~d~ 94 (168)
T d1piwa2 22 RNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDTFDL 94 (168)
T ss_dssp HTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSCEEE
T ss_pred HhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhhhcccce
Confidence 4578899999999998 67777778766689999999999999888764 332 22221 1111 1112356998
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+..-.-.+-. .+....+.|+|+|.+++.-
T Consensus 95 vi~~~~~~~~~---------------~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 95 IVVCASSLTDI---------------DFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEECCSCSTTC---------------CTTTGGGGEEEEEEEEECC
T ss_pred EEEEecCCccc---------------hHHHHHHHhhccceEEEec
Confidence 87542211100 2444668899999988853
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.20 E-value=0.00062 Score=51.55 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=67.5
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----C-CC
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----P-FP 165 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~-~~ 165 (305)
+..+++++.+||=+|||. |..+..+++..++ +|+++|.++.-++.+++. |.. +++...-.++ . ..
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~---~~i~~~~~~~~~~v~~~t~ 93 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT---DILNYKNGHIEDQVMKLTN 93 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS---EEECGGGSCHHHHHHHHTT
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc---ccccccchhHHHHHHHHhh
Confidence 356788999999999986 7788888876565 799999999999888764 321 2332211111 0 12
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+|+|+-.-. .+. .+++..++++|+|.+++.-
T Consensus 94 g~G~D~vid~~g-----~~~------------~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 94 GKGVDRVIMAGG-----GSE------------TLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TSCEEEEEECSS-----CTT------------HHHHHHHHEEEEEEEEECC
T ss_pred ccCcceEEEccC-----CHH------------HHHHHHHHHhcCCEEEEEe
Confidence 245898874321 111 4788899999999998853
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.15 E-value=0.00083 Score=56.10 Aligned_cols=58 Identities=16% Similarity=0.008 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
.+.+|||||+|.|.+|..+.+... .+|+++|+++...+..++... ..++.++.+|+..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhh
Confidence 467899999999999999986533 589999999999998877643 3468999999864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.14 E-value=0.0001 Score=56.47 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=64.9
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--------C-
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--------P- 163 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--------~- 163 (305)
...+++|.+||-+||| .|..+..+++..++ +|+++|.++..++.+++. |.. .++...-.+. .
T Consensus 23 ~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~i~~~ 95 (182)
T d1vj0a2 23 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---LTLNRRETSVEERRKAIMDI 95 (182)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHHHHH
T ss_pred HhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce---EEEeccccchHHHHHHHHHh
Confidence 3456789999999998 36777788866576 899999999999988763 321 2222111110 0
Q ss_pred CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 164 FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 164 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.....+|+|+-.- ..+. .++...++|++||.+++.-
T Consensus 96 ~~~~g~Dvvid~v-----G~~~------------~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 96 THGRGADFILEAT-----GDSR------------ALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp TTTSCEEEEEECS-----SCTT------------HHHHHHHHEEEEEEEEECC
T ss_pred hCCCCceEEeecC-----Cchh------------HHHHHHHHhcCCCEEEEEe
Confidence 1124589987431 1111 4788999999999987753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.13 E-value=0.0013 Score=50.68 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=67.3
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-------
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF------- 164 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~------- 164 (305)
...++++|.+||-+|||. |..+..+++. ...+|+++|.++..++.|++. | ...+. +....++
T Consensus 19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----G----a~~~~-~~~~~~~~~~i~~~ 89 (195)
T d1kola2 19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G----FEIAD-LSLDTPLHEQIAAL 89 (195)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T----CEEEE-TTSSSCHHHHHHHH
T ss_pred HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----c----ccEEE-eCCCcCHHHHHHHH
Confidence 356889999999999997 5566667754 345999999999999988774 2 22222 2111111
Q ss_pred -CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 -PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 -~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+|+++-.-...-........ ........++.+.++++|+|.+++.-
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~~~--~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHEGA--KHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGG--GSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred hCCCCcEEEEECccccccCCcccce--eecCcHHHHHHHHHHHhcCCEEEEee
Confidence 234588888432211000000000 00000126999999999999988854
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.0013 Score=49.65 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=65.5
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------C
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------F 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~ 164 (305)
..++.++.+||-.|+ |.|..+..+++..+++|++++.++..++.+++ .|.. .++ |..+.. .
T Consensus 23 ~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~---~vi--~~~~~~~~~~i~~~t 93 (174)
T d1yb5a2 23 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVF--NHREVNYIDKIKKYV 93 (174)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEE--ETTSTTHHHHHHHHH
T ss_pred HhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc---ccc--ccccccHHHHhhhhh
Confidence 457789999999996 46677788887678999999999988777765 3432 222 222211 1
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
....+|+|+..-. . . .++...++|+|+|.++..
T Consensus 94 ~~~g~d~v~d~~g-----~--~-----------~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 94 GEKGIDIIIEMLA-----N--V-----------NLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp CTTCEEEEEESCH-----H--H-----------HHHHHHHHEEEEEEEEEC
T ss_pred ccCCceEEeeccc-----H--H-----------HHHHHHhccCCCCEEEEE
Confidence 2456999986421 1 1 478888999999998874
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.58 E-value=0.0016 Score=51.93 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=70.4
Q ss_pred CCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-----cC------------------
Q 042544 67 GESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-----SS------------------ 123 (305)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~------------------ 123 (305)
|..+|..+.+......-+..-. ........-..+..++|-.||+|.+.++.+.. |+
T Consensus 18 g~~L~~~~~~~~~~~~Laa~il-~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w 96 (249)
T d1o9ga_ 18 GVVLHSAPGYPAFPVRLATEIF-QRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNL 96 (249)
T ss_dssp TTSSCCBTTBCCCCHHHHHHHH-HHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHH
T ss_pred CCccccCCCCCCcchHHHHHHH-HHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHH
Confidence 4556554444444433222222 22222333345567999999999999876531 11
Q ss_pred ------------------CeEEEEcCCHHHHHHH---HHHHHhcCCCCCeEEEEcCCCCCC-C----CCCCeeEEEeccc
Q 042544 124 ------------------TSVTGLNNNEYQITRG---KELNRFAGVDKTCNFVKADFMKMP-F----PDNSFDAVYAIEA 177 (305)
Q Consensus 124 ------------------~~v~gvD~s~~~l~~a---~~~~~~~~~~~~~~~~~~d~~~~~-~----~~~~fD~v~~~~~ 177 (305)
..++|.|+++.+++.| ++++...|+...+++.+.|+.+.. . +....++|+++--
T Consensus 97 ~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP 176 (249)
T d1o9ga_ 97 ALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP 176 (249)
T ss_dssp HTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC
T ss_pred HHHHHHHHHHHhccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCC
Confidence 2467899999999988 468888899888999999987532 1 2345688988643
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.55 E-value=0.0021 Score=47.90 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=61.9
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FPDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~ 168 (305)
..+++++.+||=+||| .|..+..+++..+.+|+++|.++..++.+++. |.. .++..+-.+.. ...+.
T Consensus 22 ~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~g~ 94 (166)
T d1llua2 22 QTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GAS---LTVNARQEDPVEAIQRDIGGA 94 (166)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHHHSSE
T ss_pred HhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Ccc---ccccccchhHHHHHHHhhcCC
Confidence 4578899999999987 45566666766689999999999999888763 322 23322221110 11122
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|.|.+... .. .+....+.|+++|.+++.
T Consensus 95 ~~~i~~~~~------~~------------~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 95 HGVLVTAVS------NS------------AFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEEEECCSC------HH------------HHHHHHTTEEEEEEEEEC
T ss_pred ccccccccc------ch------------HHHHHHHHhcCCcEEEEE
Confidence 344443221 11 478888999999998874
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.0046 Score=46.25 Aligned_cols=98 Identities=18% Similarity=0.133 Sum_probs=63.9
Q ss_pred HcCCCCCCeEEEEcCCCC-hHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------C
Q 042544 95 QLGLKSGQKVLDVGCGIG-GPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------F 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G-~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~ 164 (305)
..+++++.+||=+|||.. ..+..+++..++ +|+++|.++.-++.|++. |.. .++..+-.+.. -
T Consensus 21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARKVEGQ 93 (171)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHHHHHH
T ss_pred HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc---cccccccccccccccccccc
Confidence 457889999999999854 455555655566 899999999999988763 322 22222211110 0
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+|+|+-.- ..+. .++...+.+++||.+++.-
T Consensus 94 ~g~g~Dvvid~~-----G~~~------------~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 94 LGCKPEVTIECT-----GAEA------------SIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp HTSCCSEEEECS-----CCHH------------HHHHHHHHSCTTCEEEECS
T ss_pred CCCCceEEEecc-----CCch------------hHHHHHHHhcCCCEEEEEe
Confidence 123578887432 1221 4888999999999988854
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.29 E-value=0.0053 Score=46.07 Aligned_cols=98 Identities=13% Similarity=0.176 Sum_probs=63.8
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCCC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~ 167 (305)
.++++++.+||=+|||. |..+..+++..+ ..|+++|.++.-++.+++. |. .+++..+-.+. .+.++
T Consensus 23 ~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 23 ALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA---THVINSKTQDPVAAIKEITDG 95 (174)
T ss_dssp TTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHTTS
T ss_pred hhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC---eEEEeCCCcCHHHHHHHHcCC
Confidence 46788999999999974 335555664434 4678889999999888764 32 23443332221 12245
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+-. ..... .++.+.++++|+|.+++.-
T Consensus 96 g~D~vid~-----~G~~~------------~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 96 GVNFALES-----TGSPE------------ILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp CEEEEEEC-----SCCHH------------HHHHHHHTEEEEEEEEECC
T ss_pred CCcEEEEc-----CCcHH------------HHHHHHhcccCceEEEEEe
Confidence 79988743 11211 4788899999999988753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.28 E-value=0.0053 Score=46.14 Aligned_cols=98 Identities=12% Similarity=0.182 Sum_probs=65.5
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-------CC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-------FP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~ 165 (305)
...++++.+||=+|||. |..+..+++..++ .|+.+|+++.-++.+++. |.. .++...-.+.. ..
T Consensus 23 ~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~~ 95 (174)
T d1e3ia2 23 TAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT---DCLNPRELDKPVQDVITELT 95 (174)
T ss_dssp TSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC---cccCCccchhhhhhhHhhhh
Confidence 46788999999999997 7788888865565 799999999998888773 322 22221111100 11
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
.+.+|+|+-.- ..+. ++.+..+.++++ |.+++.-
T Consensus 96 ~~G~d~vie~~-----G~~~------------~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 96 AGGVDYSLDCA-----GTAQ------------TLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp TSCBSEEEESS-----CCHH------------HHHHHHHTBCTTTCEEEECC
T ss_pred cCCCcEEEEec-----ccch------------HHHHHHHHhhcCCeEEEecC
Confidence 25588886421 1221 588899999996 8887753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.26 E-value=0.0052 Score=45.61 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=61.1
Q ss_pred HcCCCCCCeEEEEcCCCCh-HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CCCC
Q 042544 95 QLGLKSGQKVLDVGCGIGG-PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~ 167 (305)
..+++++.+||=.|||+-. .+..+++..+++|+++|.++.-++.+++. |. +.+........ ...+
T Consensus 22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga----~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T d1rjwa2 22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GA----DLVVNPLKEDAAKFMKEKVGG 93 (168)
T ss_dssp HHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TC----SEEECTTTSCHHHHHHHHHSS
T ss_pred HhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Cc----ceecccccchhhhhcccccCC
Confidence 4578899999999998644 44445566688999999999998887662 32 22222221100 1123
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|++.. ... .+....+.|+|+|.+++.-
T Consensus 94 ~~~~v~~~~------~~~------------~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 94 VHAAVVTAV------SKP------------AFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp EEEEEESSC------CHH------------HHHHHHHHEEEEEEEEECC
T ss_pred CceEEeecC------CHH------------HHHHHHHHhccCCceEecc
Confidence 344443321 111 4888999999999988853
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.0034 Score=46.90 Aligned_cols=98 Identities=23% Similarity=0.245 Sum_probs=65.9
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCCeeEE
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNSFDAV 172 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v 172 (305)
..+++++.+||=+||| .|.++..+++..+++++++|.++..++.+++. |.. .++...-.. .......+|++
T Consensus 25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Gad---~~i~~~~~~~~~~~~~~~D~v 97 (168)
T d1uufa2 25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAAHLKSFDFI 97 (168)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHTTTTCEEEE
T ss_pred HhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CCc---EEEECchhhHHHHhcCCCcee
Confidence 5678899999999997 46677777766689999999999888777653 322 222221111 11123568988
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+-.-. .+. .+....+.|+++|.+++.-
T Consensus 98 id~~g-----~~~------------~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 98 LNTVA-----APH------------NLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EECCS-----SCC------------CHHHHHTTEEEEEEEEECC
T ss_pred eeeee-----cch------------hHHHHHHHHhcCCEEEEec
Confidence 75321 111 4888889999999988853
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.16 E-value=0.0084 Score=47.61 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=40.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHH
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNR 144 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 144 (305)
.+|..|||.-||+|..+....+. +-+.+|+|+++..++.|++++.
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~~-~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHc
Confidence 67899999999999988776664 8999999999999999999874
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.014 Score=43.67 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=65.7
Q ss_pred HcCCCCCCeEEEEcCC--CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CCC
Q 042544 95 QLGLKSGQKVLDVGCG--IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 166 (305)
...++++.+||=.|+| .|..+..+++..+++|++++.|+..++.+++. |.. +++..+-.++. -..
T Consensus 23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~---~vi~~~~~d~~~~v~~~t~g 95 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERLKEITGG 95 (179)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTTT
T ss_pred HhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe---EEEECCCCCHHHHHHHHhCC
Confidence 4567889999988666 56788888876799999999999999888764 332 23321111110 123
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+|+|+..-.- . .+......|+++|.+++..
T Consensus 96 ~g~d~v~d~~g~-----~-------------~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 96 KKVRVVYDSVGR-----D-------------TWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp CCEEEEEECSCG-----G-------------GHHHHHHTEEEEEEEEECC
T ss_pred CCeEEEEeCccH-----H-------------HHHHHHHHHhcCCeeeecc
Confidence 568888753221 1 4788899999999877643
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.76 E-value=0.01 Score=48.74 Aligned_cols=47 Identities=9% Similarity=-0.135 Sum_probs=40.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHh
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF 145 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 145 (305)
-.+|..|||.-||+|..+...... +-+.+|+|+++..++.|++++..
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~l-gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSC
T ss_pred ccCCCEEEecCCCCcHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHHHh
Confidence 358899999999999988887664 89999999999999999887643
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.70 E-value=0.0028 Score=47.06 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=65.5
Q ss_pred CCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
++.+||=||+| .|..+...+...++.|+.+|.++..++..+..... ++++...+-..+.-.-...|+|+..-.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEeeec
Confidence 45799999999 46677777766799999999999999877765432 3555554443221111347999876554
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCce
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFE 212 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~ 212 (305)
.--+.|.. .-+++.+.+|||..+
T Consensus 106 pG~~aP~l-----------It~~mv~~Mk~GSVI 128 (168)
T d1pjca1 106 PGRRAPIL-----------VPASLVEQMRTGSVI 128 (168)
T ss_dssp TTSSCCCC-----------BCHHHHTTSCTTCEE
T ss_pred CCcccCee-----------ecHHHHhhcCCCcEE
Confidence 43333333 467888999998753
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.48 E-value=0.016 Score=48.43 Aligned_cols=83 Identities=13% Similarity=0.054 Sum_probs=49.8
Q ss_pred CCeEEEEcCCCChHHHHHHh-----------------hcCCeEEEEcCCHHHHHHHHHHHHhcCC-CCC--eEEEEcCCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQ-----------------FSSTSVTGLNNNEYQITRGKELNRFAGV-DKT--CNFVKADFM 160 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~-----------------~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~--~~~~~~d~~ 160 (305)
.-+|.|+||.+|..+..+.. .+..+|.--|+-..-....-+.+....- ..+ +.-+.+.+.
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 36799999999988853321 1234666667644333222222211111 111 233556666
Q ss_pred CCCCCCCCeeEEEecccccccCC
Q 042544 161 KMPFPDNSFDAVYAIEATCHAPD 183 (305)
Q Consensus 161 ~~~~~~~~fD~v~~~~~l~~~~~ 183 (305)
.--||+++.|++++..++|++..
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~ 154 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQ 154 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSS
T ss_pred hhcCCCCceEEeeehhhhhhhhc
Confidence 65588999999999999999864
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.47 E-value=0.012 Score=44.21 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=64.2
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CCC
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 166 (305)
...++++.+||=.|. |.|..+..+++..++++++++-+++..+.+++ .|.. .++...-.++. ...
T Consensus 20 ~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~t~~ 92 (183)
T d1pqwa_ 20 VGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFADEILELTDG 92 (183)
T ss_dssp TSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHHHHHHHTTT
T ss_pred HhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----cccc---ccccCCccCHHHHHHHHhCC
Confidence 456788999998773 46678888886678999999988887776654 3432 22222211110 123
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..+|+|+..-. .. .++.+.++|+++|.++..
T Consensus 93 ~g~d~v~d~~g-----~~-------------~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 93 YGVDVVLNSLA-----GE-------------AIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp CCEEEEEECCC-----TH-------------HHHHHHHTEEEEEEEEEC
T ss_pred CCEEEEEeccc-----ch-------------HHHHHHHHhcCCCEEEEE
Confidence 56999986432 11 478889999999998874
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.45 E-value=0.012 Score=47.20 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=41.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA 146 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 146 (305)
.+|..|||.-||+|..+...... +-+.+|+|+++...+.|++++...
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa~~l-gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred CCCCEEEecCCCCcHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 58899999999999988877664 889999999999999999998754
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.25 E-value=0.013 Score=43.43 Aligned_cols=98 Identities=22% Similarity=0.300 Sum_probs=63.3
Q ss_pred HHcCCCCCCeEEEEcCC--CChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------C
Q 042544 94 LQLGLKSGQKVLDVGCG--IGGPLREIAQFSS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------F 164 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~ 164 (305)
...+++++.+||=+||+ .|..+..+++..+ .+|+++|.++.-++.+++. |.. .++..+-.+.. .
T Consensus 21 ~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~ 93 (170)
T d1jvba2 21 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRIT 93 (170)
T ss_dssp HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHT
T ss_pred HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHHh
Confidence 35678899999999973 4555666664334 6999999999998888764 322 23332222210 1
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
....||+|+.... ... .++...+.++|+|.+++.
T Consensus 94 ~~~~~d~vid~~g-----~~~------------~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 94 ESKGVDAVIDLNN-----SEK------------TLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp TTSCEEEEEESCC-----CHH------------HHTTGGGGEEEEEEEEEC
T ss_pred hcccchhhhcccc-----cch------------HHHhhhhhcccCCEEEEe
Confidence 2356998885421 111 356677899999998875
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.97 E-value=0.0072 Score=45.46 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=64.0
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCCeeE
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNSFDA 171 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~ 171 (305)
....+++.+||=-|+ |.|.+++.+++..+++|+++.-|+.-.+.+++. |...-+.....+.+. .....+.+|+
T Consensus 26 ~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~vi~~~~~~~~~~~~~~~~gvD~ 101 (176)
T d1xa0a2 26 HGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKEVLAREDVMAERIRPLDKQRWAA 101 (176)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSEEEECC---------CCSCCEEE
T ss_pred hCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccceeeecchhHHHHHHHhhccCcCE
Confidence 345667889998875 455677788876799999999998888877763 332111111111111 1223467998
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+-. +... .+....++|+++|.+++.-
T Consensus 102 vid~-----vgg~-------------~~~~~l~~l~~~Griv~~G 128 (176)
T d1xa0a2 102 AVDP-----VGGR-------------TLATVLSRMRYGGAVAVSG 128 (176)
T ss_dssp EEEC-----STTT-------------THHHHHHTEEEEEEEEECS
T ss_pred EEEc-----CCch-------------hHHHHHHHhCCCceEEEee
Confidence 8743 2211 5889999999999988754
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.88 E-value=0.033 Score=41.78 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=65.0
Q ss_pred HHcCCCCCCeEEEEcCCC--ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CC
Q 042544 94 LQLGLKSGQKVLDVGCGI--GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FP 165 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~ 165 (305)
+..++++|.+||=.|++. |..+..+++..+++|++++-+++.++.+++. |.. +++..+-.... ..
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~---~vi~~~~~~~~~~~~~~~~ 95 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD---AAFNYKTVNSLEEALKKAS 95 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCSCHHHHHHHHC
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh---hhcccccccHHHHHHHHhh
Confidence 356788999999878754 5677777776789999999999887776663 322 23322222110 12
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
...+|+|+-. +..+ .+++..++|+++|.+++.
T Consensus 96 ~~Gvd~v~D~-----vG~~-------------~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 96 PDGYDCYFDN-----VGGE-------------FLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp TTCEEEEEES-----SCHH-------------HHHHHGGGEEEEEEEEEC
T ss_pred cCCCceeEEe-----cCch-------------hhhhhhhhccCCCeEEee
Confidence 3568998743 2211 488899999999988874
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.86 E-value=0.13 Score=43.07 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=51.7
Q ss_pred HHcCCCCCCeEEEEcCCCChHHHHHHhhc--------CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 042544 94 LQLGLKSGQKVLDVGCGIGGPLREIAQFS--------STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP 165 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (305)
..++.++...|+|+|+|+|.++..+.+.. ..+++-+|+|+...+.-++.+... .++.+ ..++..+|
T Consensus 73 ~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~---~~i~w-~~~~~~~~-- 146 (365)
T d1zkda1 73 KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHW-HDSFEDVP-- 146 (365)
T ss_dssp HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEE-ESSGGGSC--
T ss_pred HHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc---cccee-ccChhhcc--
Confidence 34555556789999999999998876431 247899999998776665554321 23433 33444433
Q ss_pred CCCeeEEEecccccccCC
Q 042544 166 DNSFDAVYAIEATCHAPD 183 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~ 183 (305)
+ ..-+|+++..+..+|-
T Consensus 147 ~-~~g~iiaNE~fDAlPv 163 (365)
T d1zkda1 147 E-GPAVILANEYFDVLPI 163 (365)
T ss_dssp C-SSEEEEEESSGGGSCC
T ss_pred c-CCeEEEecccCccccc
Confidence 1 1256666665555553
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.62 E-value=0.0068 Score=45.34 Aligned_cols=93 Identities=17% Similarity=0.240 Sum_probs=62.1
Q ss_pred HcCCCCCCeEEEEcC-C-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCe
Q 042544 95 QLGLKSGQKVLDVGC-G-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~f 169 (305)
..++.++.+||=.|. | .|..+..+++..+++|++++.++..++.+++ .|.. .++ |..+.. -....+
T Consensus 22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~---~~i--~~~~~~~~~~~~~g~ 92 (171)
T d1iz0a2 22 RAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EAA--TYAEVPERAKAWGGL 92 (171)
T ss_dssp HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EEE--EGGGHHHHHHHTTSE
T ss_pred HhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc---eee--ehhhhhhhhhccccc
Confidence 467889999998884 3 4567777886668999999999888777665 3432 111 222211 112468
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+|+-.. . + .+....++|+|+|.++..
T Consensus 93 D~v~d~~--G---~--------------~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 93 DLVLEVR--G---K--------------EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEEEECS--C---T--------------THHHHHTTEEEEEEEEEC
T ss_pred ccccccc--c---h--------------hHHHHHHHHhcCCcEEEE
Confidence 9987521 1 1 367788999999998764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.59 E-value=0.047 Score=40.41 Aligned_cols=96 Identities=18% Similarity=0.127 Sum_probs=61.2
Q ss_pred CCCCCCeEEEEcCCCC-hHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CCCCCe
Q 042544 97 GLKSGQKVLDVGCGIG-GPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FPDNSF 169 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G-~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~f 169 (305)
.++++.+||=+|||.. ..+..+++. ....|+++|.++.-++.+++. +. .+++..+-.... .....+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga---~~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA---DHVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCHHHHHHHHTTTCCE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc---ceeecCcccHHHHHHHhhCCCCc
Confidence 4678999999999854 455566643 346889999999988887763 22 233332211110 122458
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|+-.- .... .++...+.|+++|.+++.-
T Consensus 102 d~vid~~-----g~~~------------~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 102 NVAMDFV-----GSQA------------TVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEEEESS-----CCHH------------HHHHGGGGEEEEEEEEECC
T ss_pred eEEEEec-----Ccch------------HHHHHHHHHhCCCEEEEEe
Confidence 8887432 1111 4778889999999998853
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=93.98 E-value=0.23 Score=40.10 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=71.6
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC--CCeEEEEcCCCCC-C-------CCCCCeeE
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD--KTCNFVKADFMKM-P-------FPDNSFDA 171 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~d~~~~-~-------~~~~~fD~ 171 (305)
..|+.+|||-=.-...+....+.+++=+|. |.+++.-++.+...+.. .+..++..|+.+- . +..+..-+
T Consensus 91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl 169 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA 169 (297)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence 456779999766555543234678888886 88888777777766543 3457788888651 1 22234457
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++-+++.+++...... +++.+.+...||+.+++.
T Consensus 170 ~i~EGvl~YL~~~~~~~---------ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 170 WLAEGLLMYLPATAQDG---------LFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp EEECSCGGGSCHHHHHH---------HHHHHHHTCCTTCEEEEE
T ss_pred EEEccccccCCHHHHHH---------HHHHHHHhCCCCCEEEEE
Confidence 77778899998876543 688888888888887775
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.80 E-value=0.045 Score=40.82 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=38.3
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHH
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSS-TSVTGLNNNEYQITRGKEL 142 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~ 142 (305)
..+++++.+||=+|||. |..+..+++..+ .+|+++|++++.++.|++.
T Consensus 24 ~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 24 TGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp TSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred hhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 45688999999999984 345555565555 6899999999999999885
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.61 E-value=0.13 Score=37.78 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=61.0
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-------CC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-------FP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~ 165 (305)
..+++++.+||=.||| .|.++..+++..+ ..|+++|.++.-++.+++. |.. .++..+-...+ ..
T Consensus 23 ~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~---~~i~~~~~~~~~~~~~~~~~ 95 (176)
T d2fzwa2 23 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLIEMT 95 (176)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHHHHT
T ss_pred hhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc---EEEeCCchhhHHHHHHHHHc
Confidence 4678899999999987 3345555665445 6899999999998888764 332 22222111101 11
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.+.+|+|+-.- .... +++.+..++++||..++.
T Consensus 96 ~~g~D~vid~~-----G~~~------------~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 96 DGGVDYSFECI-----GNVK------------VMRAALEACHKGWGVSVV 128 (176)
T ss_dssp TSCBSEEEECS-----CCHH------------HHHHHHHTBCTTTCEEEE
T ss_pred CCCCcEeeecC-----CCHH------------HHHHHHHhhcCCceeEEE
Confidence 34688887532 1211 477788888898887664
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.18 Score=39.78 Aligned_cols=78 Identities=17% Similarity=0.055 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----------CCC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----------FPD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~ 166 (305)
+++.+|=.|++.|. .+..|++. +++|+.++.++..++.+.+.+...+...++.++++|+.+.. -.-
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ-GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 57889989988764 33334444 89999999999999988888877766667889999998621 011
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+..|+++.+-..
T Consensus 88 g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 88 SGVDICINNAGL 99 (257)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEecccc
Confidence 568988865433
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.92 E-value=0.059 Score=40.23 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=34.6
Q ss_pred CCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHH
Q 042544 100 SGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKEL 142 (305)
Q Consensus 100 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~ 142 (305)
++.+||=||+|. |..+...|...++.|+++|+++..++..+..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l 71 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESL 71 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHT
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh
Confidence 346999999995 5566666766799999999999988877764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.12 E-value=0.097 Score=38.79 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=37.1
Q ss_pred HcCCCCCCeEEEEcCCCC-hHHHHHHhhcC-CeEEEEcCCHHHHHHHHHH
Q 042544 95 QLGLKSGQKVLDVGCGIG-GPLREIAQFSS-TSVTGLNNNEYQITRGKEL 142 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G-~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~ 142 (305)
...++++.+||=+|||.. ..+..+++..+ .+|+++|.++.-++.+++.
T Consensus 22 ~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l 71 (174)
T d1p0fa2 22 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 71 (174)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred hhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence 467889999999999843 44555555445 5899999999999988763
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=92.09 E-value=0.36 Score=38.88 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=49.2
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeE-EEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecc
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSV-TGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIE 176 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v-~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~ 176 (305)
++|||+-||.|.+..-+.+. +.++ .++|+++...+..+.+. + ..++.+|+.++... -...|++++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~~~~dll~~g~ 69 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGP 69 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHcccccEEeecc
Confidence 47999999999999887654 5554 49999998887766653 2 35678999886432 13579998754
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=91.81 E-value=0.031 Score=42.19 Aligned_cols=100 Identities=9% Similarity=0.105 Sum_probs=59.5
Q ss_pred HcCCCCCCeEEEEcCC---CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc---CCCCCC-----
Q 042544 95 QLGLKSGQKVLDVGCG---IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA---DFMKMP----- 163 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG---~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~---d~~~~~----- 163 (305)
...+.++.+||=+.+| .|..+..+++..+++|+++--++...+...+.+...|.. .++.. |..++.
T Consensus 23 ~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad---~vi~~~~~~~~~~~~~v~~ 99 (189)
T d1gu7a2 23 YVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPTIKE 99 (189)
T ss_dssp SSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHHHHH
T ss_pred HhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc---EEEeccccchhHHHHHHHH
Confidence 4577888888877443 456777788667999998855544444444444445543 22222 221110
Q ss_pred ---CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 164 ---FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 164 ---~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.....+|+|+-. +..+ .+....++|+++|.++..
T Consensus 100 ~~~~~g~~vdvv~D~-----vg~~-------------~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 100 WIKQSGGEAKLALNC-----VGGK-------------SSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHTCCEEEEEES-----SCHH-------------HHHHHHHTSCTTCEEEEC
T ss_pred HHhhccCCceEEEEC-----CCcc-------------hhhhhhhhhcCCcEEEEE
Confidence 012457888732 2222 467788999999998764
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=91.59 E-value=0.038 Score=40.88 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=61.3
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCC-C--CCCCCCCeeEE
Q 042544 98 LKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM-K--MPFPDNSFDAV 172 (305)
Q Consensus 98 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~-~--~~~~~~~fD~v 172 (305)
.+++.+||=-|+ |.|.++..+++..+++|+++.-|++..+.+++. |... + +...|.. + .....+.+|+|
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad~-v-i~~~~~~~~~~~~~~~~gvd~v 94 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GASE-V-ISREDVYDGTLKALSKQQWQGA 94 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCSE-E-EEHHHHCSSCCCSSCCCCEEEE
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----cccc-e-EeccchhchhhhcccCCCceEE
Confidence 445667886664 456788888877799999999998887777664 3321 1 1111111 1 11234668988
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+-. +-.. .+.+..+.|+++|.+++.-
T Consensus 95 id~-----vgg~-------------~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 95 VDP-----VGGK-------------QLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp EES-----CCTH-------------HHHHHHTTEEEEEEEEECC
T ss_pred Eec-----CcHH-------------HHHHHHHHhccCceEEEee
Confidence 633 2222 4888999999999988753
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.33 E-value=0.53 Score=34.39 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=59.6
Q ss_pred HHcCCCCCCeEEEEcCCCCh-HHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEE-cCCCCC------CC
Q 042544 94 LQLGLKSGQKVLDVGCGIGG-PLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVK-ADFMKM------PF 164 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~~------~~ 164 (305)
....+++|.+||=+|||.+. .+..++... ..+|+++|.++.-++.+++. |.. .++. .+..+. ..
T Consensus 22 ~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~ 94 (176)
T d2jhfa2 22 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT---ECVNPQDYKKPIQEVLTEM 94 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHHHH
T ss_pred HhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CCe---eEEecCCchhHHHHHHHHH
Confidence 34578899999999997443 444444433 47999999999999888764 221 2222 121111 01
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..+.+|+|+-..... . ..+.....++++|..++.
T Consensus 95 ~~~G~D~vid~~G~~-----~------------~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 95 SNGGVDFSFEVIGRL-----D------------TMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp TTSCBSEEEECSCCH-----H------------HHHHHHHHBCTTTCEEEE
T ss_pred hcCCCCEEEecCCch-----h------------HHHHHHHHHhcCCcceEE
Confidence 235689887542211 1 467778888887554444
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=90.91 E-value=0.33 Score=40.89 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=42.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhh-c--CCeEEEEcCCHHHHHHHHHHHHhcCC
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQF-S--STSVTGLNNNEYQITRGKELNRFAGV 148 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~gvD~s~~~l~~a~~~~~~~~~ 148 (305)
.+.++..++|||+-.|.++..++.. . ..+|+++|+++...+..++++.....
T Consensus 209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 4567889999999999999887743 2 36999999999999999988776543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=90.37 E-value=0.24 Score=40.28 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIE 176 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~ 176 (305)
.+.+|||+-||.|.++..+.+. +.+ +.++|+++..++..+.+... ..++|+.++... -..+|+++...
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhhcceeeeeeccc
Confidence 5789999999999999988764 554 45699999999887776531 124677765322 13589998744
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.74 E-value=0.24 Score=36.34 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=36.2
Q ss_pred HcCCCCCCeEEEEcCCCChHHH-HHHh-hcCCeEEEEcCCHHHHHHHHH
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLR-EIAQ-FSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~-~l~~-~~~~~v~gvD~s~~~l~~a~~ 141 (305)
..+++++.+||=+|||.+..+. .++. .....|+++|.++.-++.+++
T Consensus 23 ~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 23 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred hhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence 4578899999999999855443 3443 345689999999999888776
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=89.64 E-value=0.24 Score=35.95 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=27.0
Q ss_pred CeEEEEcCCC--ChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 102 QKVLDVGCGI--GGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 102 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
++|.=||+|. +.++..+.+ .+.+|+++|.++..++.+++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~-~g~~V~~~d~~~~~~~~a~~ 41 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAVE 41 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHH-CCCEEEEEECCchHHHHHHH
Confidence 3677788863 223344444 48899999999998887765
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=89.29 E-value=0.85 Score=35.69 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
+++++|=.|++.|. .+..|++. +++|+.+|.+++.++.+.+.+...+...++.++++|+.+.. + .-
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 46788888887664 44455554 89999999999999888777665555557888999997631 0 01
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+..|+++.+-.
T Consensus 82 G~iDiLVnnAG 92 (258)
T d1iy8a_ 82 GRIDGFFNNAG 92 (258)
T ss_dssp SCCSEEEECCC
T ss_pred CCCCEEEECCc
Confidence 56898887643
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.98 E-value=0.25 Score=40.31 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=48.8
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCC--e-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC---CCCCeeEEEe
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSST--S-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF---PDNSFDAVYA 174 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v~~ 174 (305)
..+|+|+-||.|.+...+... +. + |.++|+.+...+..+.+. +...++.+|+.++.. +...+|++++
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~------~~~~~~~~di~~~~~~~~~~~~~Dll~g 74 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC------CCCCcccCchhhCCHhHcCCCCccEEEe
Confidence 368999999999998877643 42 3 679999999888776653 235677788876542 1235788886
Q ss_pred cc
Q 042544 175 IE 176 (305)
Q Consensus 175 ~~ 176 (305)
..
T Consensus 75 gp 76 (343)
T d1g55a_ 75 SP 76 (343)
T ss_dssp CC
T ss_pred ec
Confidence 43
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.42 E-value=0.45 Score=34.52 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=28.1
Q ss_pred eEEEEcCCC-C-hHHHHHHhh-cCCeEEEEcCCHHHHHHHHHH
Q 042544 103 KVLDVGCGI-G-GPLREIAQF-SSTSVTGLNNNEYQITRGKEL 142 (305)
Q Consensus 103 ~vLDiGcG~-G-~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~ 142 (305)
+|+=||||. | .++..|.+. ...+|+|+|.++..++.+++.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~ 45 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL 45 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence 577799984 2 234444433 346899999999999988763
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.88 E-value=1.2 Score=34.42 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----------CCC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----------FPD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~ 166 (305)
.|+.+|=-|++.|. .+..+++. +++|+.+|.+++.++...+.+...+ .++.++.+|+.+.. -..
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 57788877887764 44445554 8999999999999988888777654 46889999998732 023
Q ss_pred CCeeEEEecccccc
Q 042544 167 NSFDAVYAIEATCH 180 (305)
Q Consensus 167 ~~fD~v~~~~~l~~ 180 (305)
+..|+++.+..+.+
T Consensus 83 g~idilinnag~~~ 96 (244)
T d1yb1a_ 83 GDVSILVNNAGVVY 96 (244)
T ss_dssp CCCSEEEECCCCCC
T ss_pred CCCceeEeeccccc
Confidence 56888887655443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.85 E-value=0.91 Score=31.32 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=44.3
Q ss_pred CeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CCCCCeeEEEe
Q 042544 102 QKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FPDNSFDAVYA 174 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~v~~ 174 (305)
++|+=+|+ |.++..+++ ..+..|+.+|.++..++.+.+.. .+.++.+|..+.. ..-...|++++
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhcc
Confidence 35666666 667777763 24789999999999888765531 3678999988621 12245787776
Q ss_pred c
Q 042544 175 I 175 (305)
Q Consensus 175 ~ 175 (305)
.
T Consensus 72 ~ 72 (132)
T d1lssa_ 72 V 72 (132)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.35 E-value=0.91 Score=35.36 Aligned_cols=84 Identities=13% Similarity=0.030 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
.|+++|=.|++.|. .+..|++. +++|+.+|.+++.++.+.+.+.......++.++.+|+.+.. + .-
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLK-GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 46788878877653 33333443 89999999999998887776654333346888999998632 0 11
Q ss_pred CCeeEEEecccccccCCh
Q 042544 167 NSFDAVYAIEATCHAPDA 184 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~ 184 (305)
+..|+++.+.......+.
T Consensus 81 G~iDilVnnAg~~~~~~~ 98 (254)
T d2gdza1 81 GRLDILVNNAGVNNEKNW 98 (254)
T ss_dssp SCCCEEEECCCCCCSSSH
T ss_pred CCcCeecccccccccccc
Confidence 568998877665555444
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.21 E-value=3.3 Score=31.75 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=49.7
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CCCCCee
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FPDNSFD 170 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~fD 170 (305)
.|+++|=.|++.|. .+..|++. +++|+.+|.++..++...+.. ..+..++.|+.+.. -.-++.|
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 67899988887663 34444444 899999999998877655432 24778888987521 1125789
Q ss_pred EEEeccccc
Q 042544 171 AVYAIEATC 179 (305)
Q Consensus 171 ~v~~~~~l~ 179 (305)
+++.+-...
T Consensus 79 ilVnnAg~~ 87 (244)
T d1pr9a_ 79 LLVNNAAVA 87 (244)
T ss_dssp EEEECCCCC
T ss_pred EEEeccccc
Confidence 888765443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=86.90 E-value=1.5 Score=34.17 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----------CC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----------FP 165 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 165 (305)
+|+++|=.|+..|. .+..+++. +++|+.++.++..++.+.+.+...+ ..+.++.+|+.+.. .-
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 57899988887653 33344444 8999999999999988888777665 35888899997621 11
Q ss_pred CCCeeEEEecccc
Q 042544 166 DNSFDAVYAIEAT 178 (305)
Q Consensus 166 ~~~fD~v~~~~~l 178 (305)
++..|+++.+...
T Consensus 82 ~g~idilinnag~ 94 (258)
T d1ae1a_ 82 DGKLNILVNNAGV 94 (258)
T ss_dssp TSCCCEEEECCCC
T ss_pred CCCcEEEeccccc
Confidence 2567888765433
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=86.84 E-value=1.4 Score=34.45 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
+|+++|=.|.+.|. .+..|++. +++|+.+|.+++.++.+.+.+...+ .++.++.+|+.+.. + .-
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57888977876653 34444444 8999999999999998888777654 35888999987621 0 11
Q ss_pred CCeeEEEecc
Q 042544 167 NSFDAVYAIE 176 (305)
Q Consensus 167 ~~fD~v~~~~ 176 (305)
+..|+++.+.
T Consensus 81 g~iDilVnna 90 (260)
T d1zema1 81 GKIDFLFNNA 90 (260)
T ss_dssp SCCCEEEECC
T ss_pred CCCCeehhhh
Confidence 5689888654
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=86.61 E-value=0.63 Score=34.25 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=58.5
Q ss_pred CCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC--CCCCCCCeeEEEec
Q 042544 100 SGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK--MPFPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~v~~~ 175 (305)
++.+||=.|+ |.|..++.+++..+++|+++.-+++..+.+++. |.. .++.-+-.+ -......+|.|+-
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Gad---~vi~~~~~~~~~~l~~~~~~~vvD- 102 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GAS---RVLPRDEFAESRPLEKQVWAGAID- 102 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TEE---EEEEGGGSSSCCSSCCCCEEEEEE-
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----ccc---cccccccHHHHHHHHhhcCCeeEE-
Confidence 4457886553 356678888877799999999999888777653 321 222222111 1234456787642
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.+... .+....+.|+++|.++..
T Consensus 103 ----~Vgg~-------------~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 103 ----TVGDK-------------VLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp ----SSCHH-------------HHHHHHHTEEEEEEEEEC
T ss_pred ----EcchH-------------HHHHHHHHhccccceEee
Confidence 22222 488899999999998875
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.07 E-value=1.3 Score=32.66 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=59.2
Q ss_pred HHcCCCCC--CeEEEEc--CCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----
Q 042544 94 LQLGLKSG--QKVLDVG--CGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----- 163 (305)
Q Consensus 94 ~~~~~~~~--~~vLDiG--cG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----- 163 (305)
....++++ .+||=.| .|.|..+..+++..++ .|+++..+++......+ ..+.. .++...-.++.
T Consensus 22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~---~~gad---~vi~~~~~~~~~~~~~ 95 (187)
T d1vj1a2 22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTS---ELGFD---AAVNYKTGNVAEQLRE 95 (187)
T ss_dssp HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHH---HSCCS---EEEETTSSCHHHHHHH
T ss_pred HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhh---cccce---EEeeccchhHHHHHHH
Confidence 34566666 7799877 4688999999976565 57777777665543322 22322 22222211110
Q ss_pred CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 164 FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 164 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..++.+|+|+-.- ... .+....++|+++|.++..
T Consensus 96 ~~~~GvDvv~D~v-----Gg~-------------~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 96 ACPGGVDVYFDNV-----GGD-------------ISNTVISQMNENSHIILC 129 (187)
T ss_dssp HCTTCEEEEEESS-----CHH-------------HHHHHHTTEEEEEEEEEC
T ss_pred HhccCceEEEecC-----Cch-------------hHHHHhhhccccccEEEe
Confidence 1235699997332 111 478889999999998764
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.04 E-value=1.3 Score=34.94 Aligned_cols=77 Identities=25% Similarity=0.182 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCCC-----C-----C
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKMP-----F-----P 165 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~-----~-----~ 165 (305)
+|+++|=-|++.|. .+..|++. +++|+.+|.++..++.+.+.+...+.. .++.++++|+.+.. + .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 57788877877663 33444444 899999999999999888887776543 46889999997631 0 1
Q ss_pred CCCeeEEEeccc
Q 042544 166 DNSFDAVYAIEA 177 (305)
Q Consensus 166 ~~~fD~v~~~~~ 177 (305)
-+..|+++.+..
T Consensus 82 ~G~iDilVnnAG 93 (274)
T d1xhla_ 82 FGKIDILVNNAG 93 (274)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCceEEEeecc
Confidence 156898887643
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.00 E-value=1.4 Score=34.55 Aligned_cols=76 Identities=21% Similarity=0.161 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC-CCCeEEEEcCCCCCC-----C-----C
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV-DKTCNFVKADFMKMP-----F-----P 165 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~~d~~~~~-----~-----~ 165 (305)
+++++|=.|++.|. .+..|++. +++|+.+|.+++.++.+.+.+...+. ..++.++++|+.+.. + .
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~-Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQE-GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 57788877876653 33444444 89999999999999988888776654 246889999997621 0 1
Q ss_pred CCCeeEEEecc
Q 042544 166 DNSFDAVYAIE 176 (305)
Q Consensus 166 ~~~fD~v~~~~ 176 (305)
-+..|+++.+.
T Consensus 83 ~g~iDilvnnA 93 (272)
T d1xkqa_ 83 FGKIDVLVNNA 93 (272)
T ss_dssp HSCCCEEEECC
T ss_pred hCCceEEEeCC
Confidence 15689888754
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.71 E-value=2.2 Score=34.62 Aligned_cols=108 Identities=11% Similarity=0.185 Sum_probs=64.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhc-------C-------------CCCCeEEEEc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFA-------G-------------VDKTCNFVKA 157 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~-------~-------------~~~~~~~~~~ 157 (305)
.+...|+-+|||.=.....+.. .++.+++=||. |..++.=++.+... + ..++.+++..
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~ 173 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 173 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEec
Confidence 3456899999998877766653 34455666666 44443322222210 0 1245778888
Q ss_pred CCCCCC---------CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 158 DFMKMP---------FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 158 d~~~~~---------~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|+.+.. +..+..-++++-.++.+++.....+ +++.+.+.. |+|.+++.+.
T Consensus 174 DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~---------li~~~~~~f-~~~~~i~YE~ 232 (328)
T d1rjda_ 174 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQL---------LINTIMSKF-SHGLWISYDP 232 (328)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHH---------HHHHHHHHC-SSEEEEEEEE
T ss_pred CCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHH---------HHHHHHHhC-CCceEEEecc
Confidence 887632 2223445788888999998876543 455555554 4566666664
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=84.14 E-value=2 Score=33.38 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------C--C-
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------F--P- 165 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~--~- 165 (305)
+|+++|=.|++.|. .+..|++. +++|+.+|.++..++.+.+.+...+ .++.++.+|+.+.. . .
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 57889988877653 34444444 8999999999999988888777654 35788899987521 0 1
Q ss_pred CCCeeEEEeccccc
Q 042544 166 DNSFDAVYAIEATC 179 (305)
Q Consensus 166 ~~~fD~v~~~~~l~ 179 (305)
....|+++.+-...
T Consensus 84 ~~~idilvnnAG~~ 97 (259)
T d2ae2a_ 84 HGKLNILVNNAGIV 97 (259)
T ss_dssp TTCCCEEEECCCCC
T ss_pred CCCceEEEECCcee
Confidence 23689988765433
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=83.91 E-value=1.9 Score=33.49 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
+|+++|=.|++.| ....+++ ..+++|+.+|.+++.++.+.+.+...+ .++.++++|+.+.. + .-
T Consensus 10 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 10 DGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5778886666544 4444442 138999999999999988888777654 35888999997621 0 01
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+..|+++.+...
T Consensus 87 g~iDilvnnAG~ 98 (255)
T d1fmca_ 87 GKVDILVNNAGG 98 (255)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEeeeCCcC
Confidence 568988876543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=83.85 E-value=1.8 Score=33.71 Aligned_cols=77 Identities=17% Similarity=0.112 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC-CCCeEEEEcCCCCCC-----C-----C
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV-DKTCNFVKADFMKMP-----F-----P 165 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~~d~~~~~-----~-----~ 165 (305)
+++.+|=.|++.|. .+..|++. +++|+.+|.++..++.+.+.+...+. ..++.++++|+.+.. + .
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFARE-GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 56778877776553 33334443 89999999999999888887776654 246889999997621 0 1
Q ss_pred CCCeeEEEeccc
Q 042544 166 DNSFDAVYAIEA 177 (305)
Q Consensus 166 ~~~fD~v~~~~~ 177 (305)
-+..|+++.+..
T Consensus 83 ~g~iDilvnnAG 94 (264)
T d1spxa_ 83 FGKLDILVNNAG 94 (264)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCCCEeecccc
Confidence 156898887543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=83.62 E-value=2 Score=33.27 Aligned_cols=76 Identities=18% Similarity=0.131 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
+++.+|=.|++.| ....+++ ..+++|+.+|.++..++.+.+.+...+ .++.++++|+.+.. + .-
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 5678887787655 4444442 137899999999999988888777654 35889999998621 0 12
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+..|+++.+...
T Consensus 86 g~iDilvnnag~ 97 (251)
T d2c07a1 86 KNVDILVNNAGI 97 (251)
T ss_dssp SCCCEEEECCCC
T ss_pred CCceeeeecccc
Confidence 578988875543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=82.86 E-value=3 Score=32.21 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=51.1
Q ss_pred CCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 042544 101 GQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PDN 167 (305)
Q Consensus 101 ~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~~ 167 (305)
|+.+|=-|++.|. .+..|++. +++|+.+|.++..++.+.+.+...+. ++.++.+|+.+.. + .-+
T Consensus 2 gKValITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKE-GLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4556766766553 33334444 89999999999999988887776653 5889999997632 0 125
Q ss_pred CeeEEEeccc
Q 042544 168 SFDAVYAIEA 177 (305)
Q Consensus 168 ~fD~v~~~~~ 177 (305)
..|+++.+-.
T Consensus 79 ~iDilVnnAG 88 (257)
T d2rhca1 79 PVDVLVNNAG 88 (257)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEeccc
Confidence 7898886543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=82.44 E-value=2.1 Score=33.46 Aligned_cols=75 Identities=11% Similarity=0.069 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
+++++|=.|++.|. .+..|++. +++|+.+|.++..++.+.+.+.. ...+.++.+|+.+.. + .-
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRY-GAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57889988877664 33334444 89999999999888877665543 345788899987621 0 11
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+..|+++.+...
T Consensus 81 g~iD~lVnnAG~ 92 (268)
T d2bgka1 81 GKLDIMFGNVGV 92 (268)
T ss_dssp SCCCEEEECCCC
T ss_pred CCcceecccccc
Confidence 568988876543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.18 E-value=2.5 Score=32.79 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C----C--
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F----P-- 165 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~----~-- 165 (305)
+++++|=.|++.|. .+..|++. +++|+.+|.++..++.+.+.+...+ .++.++.+|+.+.. + .
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGF-GAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 57889988877664 34444444 8999999999999988877776654 35889999997521 0 0
Q ss_pred CCCeeEEEecccc
Q 042544 166 DNSFDAVYAIEAT 178 (305)
Q Consensus 166 ~~~fD~v~~~~~l 178 (305)
.+..|+++.+...
T Consensus 84 ~g~idilvnnAG~ 96 (259)
T d1xq1a_ 84 GGKLDILINNLGA 96 (259)
T ss_dssp TTCCSEEEEECCC
T ss_pred CCCcccccccccc
Confidence 2568988876543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.96 E-value=7.8 Score=29.43 Aligned_cols=72 Identities=15% Similarity=0.096 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CCCCCee
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FPDNSFD 170 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~fD 170 (305)
+|+++|=.|++.|. .+..|++. +++|+.+|.++..++...+.. ..+..++.|+.+.. -.-++.|
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 57889988877663 33344444 899999999988776555432 24778888987521 1125789
Q ss_pred EEEecccc
Q 042544 171 AVYAIEAT 178 (305)
Q Consensus 171 ~v~~~~~l 178 (305)
+++.+-..
T Consensus 77 ilVnnAg~ 84 (242)
T d1cyda_ 77 LLVNNAAL 84 (242)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 88876443
|