Citrus Sinensis ID: 042545

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
MENINIASVMMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLLK
ccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccHHcHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcc
ccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcc
MENINIASVMMFLLMTLCflsnkpgivgvrgeendlieatcrktsypdlciktlrsspgssgadVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKylesgdydsavqyandgiiesdtcessfsefpeipkspltdrnngltNLCTIVLDMINLLK
MENINIASVMMFLLMTLCFLSNKPGIVGVRGEENDLIEatcrktsypdlCIKTLrsspgssgADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFpeipkspltdrnngltnLCTIVLDMINLLK
MENINIASVMMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLLK
***INIASVMMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLR*******ADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTC******************NNGLTNLCTIVLDMINL**
******A*VMMFLLMTLCFLSNKP***********LIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVK************NCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLLK
MENINIASVMMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLR*********VKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLLK
**NINIASVMMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLLK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MENINIASVMMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCxxxxxxxxxxxxxxxxxxxxxCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query183 2.2.26 [Sep-21-2011]
P83326185 Pectinesterase inhibitor N/A no 0.863 0.854 0.349 3e-17
Q9LUV1173 Pectinesterase inhibitor yes no 0.918 0.971 0.262 6e-11
Q8GT41179 Putative invertase inhibi N/A no 0.803 0.821 0.292 3e-09
O49603180 Cell wall / vacuolar inhi no no 0.950 0.966 0.252 2e-08
F4HWQ8205 Cell wall / vacuolar inhi no no 0.650 0.580 0.281 9e-07
Q9LUL8 968 Putative pectinesterase/p no no 0.628 0.118 0.264 6e-05
Q9FK05 587 Probable pectinesterase/p no no 0.595 0.185 0.283 0.0005
>sp|P83326|PMEI_ACTDE Pectinesterase inhibitor OS=Actinidia deliciosa GN=PMEI PE=1 SV=2 Back     alignment and function desciption
 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 20  LSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAY 79
           LS +P +      EN LI   C KT  P LC++ L S P S+  D+K L    ++ A A 
Sbjct: 24  LSQRPSVKA----ENHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQAS 79

Query: 80  CNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDG 139
              T + +  L N+  D  ++   + C + Y  AI  +  A ++L SGDY+S   YA+  
Sbjct: 80  AKQTSKIIASLTNQATDPKLKGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYASAA 139

Query: 140 IIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182
              + TCE SF   P IP + L   +  L +LC IVL + NLL
Sbjct: 140 FDGAGTCEDSFEGPPNIP-TQLHQADLKLEDLCDIVLVISNLL 181
Inhibits pectin methylesterase; may be involved in the regulation of fruit ripening.
Actinidia deliciosa (taxid: 3627)
>sp|Q9LUV1|PMEI2_ARATH Pectinesterase inhibitor 2 OS=Arabidopsis thaliana GN=PMEI2 PE=1 SV=1 Back     alignment and function description
>sp|Q8GT41|PLA1_PLAAC Putative invertase inhibitor OS=Platanus acerifolia PE=1 SV=1 Back     alignment and function description
>sp|O49603|CVIF2_ARATH Cell wall / vacuolar inhibitor of fructosidase 2 OS=Arabidopsis thaliana GN=C/VIF2 PE=1 SV=1 Back     alignment and function description
>sp|F4HWQ8|CVIF1_ARATH Cell wall / vacuolar inhibitor of fructosidase 1 OS=Arabidopsis thaliana GN=C/VIF1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LUL8|PME26_ARATH Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query183
224109584176 predicted protein [Populus trichocarpa] 0.918 0.954 0.406 2e-24
224105791175 predicted protein [Populus trichocarpa] 0.901 0.942 0.318 1e-17
225432018181 PREDICTED: putative invertase inhibitor 0.781 0.790 0.36 2e-17
225432016169 PREDICTED: uncharacterized protein LOC10 0.781 0.846 0.36 6e-17
351721510182 uncharacterized protein LOC100306719 pre 0.961 0.967 0.331 1e-16
158518418185 RecName: Full=Pectinesterase inhibitor; 0.863 0.854 0.349 1e-15
351721611184 uncharacterized protein LOC100500640 pre 0.934 0.929 0.312 2e-15
225432020169 PREDICTED: putative invertase inhibitor 0.786 0.852 0.344 2e-15
62738429153 Chain B, Crystal Structure Of The Comple 0.814 0.973 0.36 5e-15
27544454185 pectinmethylesterase inhibitor [Actinidi 0.863 0.854 0.337 5e-15
>gi|224109584|ref|XP_002315244.1| predicted protein [Populus trichocarpa] gi|222864284|gb|EEF01415.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 98/177 (55%), Gaps = 9/177 (5%)

Query: 6   IASVMMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADV 65
           +A + +FLL+   FL     +VG      DLI+ TC+KT YP LC+KTL+S+P SS AD 
Sbjct: 4   LAWLPLFLLVN--FLHQPTTLVGA-----DLIQETCQKTRYPALCVKTLKSNPRSSTADA 56

Query: 66  KALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIY-EIPTAIKYL 124
           K L HI+LE+  A    T   V KLL E+ DKA++ CLDVC + YD A   + PTAI+ L
Sbjct: 57  KGLVHIMLEANLANSKLTLATVSKLLKESSDKALKKCLDVCAEEYDTAANDDFPTAIQSL 116

Query: 125 ESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSP-LTDRNNGLTNLCTIVLDMIN 180
           E  D  +A  + +        C  +FSE P +   P L+  N+    L    L M+N
Sbjct: 117 EINDLGTAKIHVSAAFDAPGNCRDTFSEVPGVQAPPDLSKLNDYFEQLSVTALIMLN 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224105791|ref|XP_002313933.1| predicted protein [Populus trichocarpa] gi|222850341|gb|EEE87888.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432018|ref|XP_002273484.1| PREDICTED: putative invertase inhibitor [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432016|ref|XP_002279756.1| PREDICTED: uncharacterized protein LOC100261956 [Vitis vinifera] Back     alignment and taxonomy information
>gi|351721510|ref|NP_001235420.1| uncharacterized protein LOC100306719 precursor [Glycine max] gi|255629369|gb|ACU15029.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|158518418|sp|P83326.2|PMEI_ACTDE RecName: Full=Pectinesterase inhibitor; AltName: Full=AdPMEI; Short=PMEI; AltName: Full=Pectin methylesterase inhibitor; Flags: Precursor gi|27544452|dbj|BAC54964.1| pectinmethylesterase inhibitor [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|351721611|ref|NP_001237215.1| uncharacterized protein LOC100500640 precursor [Glycine max] gi|255630835|gb|ACU15780.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225432020|ref|XP_002279801.1| PREDICTED: putative invertase inhibitor [Vitis vinifera] gi|147856996|emb|CAN79656.1| hypothetical protein VITISV_014506 [Vitis vinifera] Back     alignment and taxonomy information
>gi|62738429|pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Back     alignment and taxonomy information
>gi|27544454|dbj|BAC54965.1| pectinmethylesterase inhibitor [Actinidia deliciosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query183
TAIR|locus:2089010173 PMEI2 "pectin methylesterase i 0.775 0.820 0.283 3.1e-12
TAIR|locus:2174774180 C/VIF2 "cell wall / vacuolar i 0.956 0.972 0.261 3.1e-12
TAIR|locus:2086167183 AT3G17130 [Arabidopsis thalian 0.912 0.912 0.252 1.7e-11
TAIR|locus:2171002178 AT5G46930 [Arabidopsis thalian 0.901 0.926 0.271 2.5e-10
TAIR|locus:2202605205 C/VIF1 "cell wall / vacuolar i 0.885 0.790 0.240 3.2e-10
TAIR|locus:4010713751175 AT3G17152 [Arabidopsis thalian 0.945 0.988 0.237 5.2e-10
TAIR|locus:2023797176 PMEI1 "pectin methylesterase i 0.743 0.772 0.275 5.9e-09
TAIR|locus:2086072184 AT3G17150 [Arabidopsis thalian 0.928 0.923 0.237 7.6e-09
TAIR|locus:2171012176 AT5G46940 [Arabidopsis thalian 0.928 0.965 0.277 1.6e-07
TAIR|locus:2065119282 AT2G47340 [Arabidopsis thalian 0.748 0.485 0.251 8.4e-07
TAIR|locus:2089010 PMEI2 "pectin methylesterase inhibitor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 42/148 (28%), Positives = 72/148 (48%)

Query:    37 IEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKD 96
             I+A C K      C   ++S+P +SGAD++ LA+I   SA    ++ + +++ L+    +
Sbjct:    30 IKAICGKAKNQSFCTSYMKSNPKTSGADLQTLANITFGSAQTSASEGFRKIQSLVKTATN 89

Query:    97 KAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIES-DTCESSFSEFPE 155
               M+     C Q Y  AI  +  A + L SGD    +       +E   TCE   ++F  
Sbjct:    90 PTMKKAYTSCVQHYKSAISSLNDAKQSLASGD-GKGLNIKVSAAMEGPSTCEQDMADFKV 148

Query:   156 IPKSPLTDRNNG-LTNLCTIVLDMINLL 182
              P +    +N+G   N+C IVL + N++
Sbjct:   149 DPSAV---KNSGDFQNICGIVLVISNMM 173
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0030599 "pectinesterase activity" evidence=IEA
GO:0046910 "pectinesterase inhibitor activity" evidence=ISS;IDA
GO:0009860 "pollen tube growth" evidence=RCA;IDA
GO:0012505 "endomembrane system" evidence=IDA
GO:0090404 "pollen tube tip" evidence=IDA
GO:0009827 "plant-type cell wall modification" evidence=RCA
TAIR|locus:2174774 C/VIF2 "cell wall / vacuolar inhibitor of fructosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086167 AT3G17130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171002 AT5G46930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202605 C/VIF1 "cell wall / vacuolar inhibitor of fructosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4010713751 AT3G17152 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2023797 PMEI1 "pectin methylesterase inhibitor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086072 AT3G17150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171012 AT5G46940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065119 AT2G47340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 2e-37
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 6e-35
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 4e-31
PLN02314 586 PLN02314, PLN02314, pectinesterase 2e-07
PLN02484 587 PLN02484, PLN02484, probable pectinesterase/pectin 8e-06
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information 
 Score =  127 bits (320), Expect = 2e-37
 Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 3/178 (1%)

Query: 5   NIASVMMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLRSSPGSSGAD 64
           +  S+++FLL+     ++    +        LI+  C+KT YP+ CI TL+S P S+ AD
Sbjct: 3   SSLSLLLFLLLLSLVATSSSNSLNAT---QSLIKRICKKTEYPNFCISTLKSDPSSAKAD 59

Query: 65  VKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYL 124
           ++ LA+I + +A +  +DT + + KLL    D   ++ L+ C ++Y  A+  +  A+  L
Sbjct: 60  LQGLANISVSAALSNASDTLDHISKLLLTKGDPRDKSALEDCVELYSDAVDALDKALASL 119

Query: 125 ESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182
           +S DY  A  + +  + +  TCE  F E   I KSPLT RNN +  L +I L +I +L
Sbjct: 120 KSKDYSDAETWLSSALTDPSTCEDGFEELGGIVKSPLTKRNNNVKKLSSITLAIIKML 177

This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by This model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family. Length = 178
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 183
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 100.0
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 100.0
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.97
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 99.96
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 99.96
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 99.95
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 99.95
PLN02314 586 pectinesterase 99.95
PLN02313 587 Pectinesterase/pectinesterase inhibitor 99.94
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 99.94
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 99.94
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 99.93
PLN02301 548 pectinesterase/pectinesterase inhibitor 99.93
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 99.93
PLN02197 588 pectinesterase 99.93
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 99.93
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 99.92
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 99.91
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 99.9
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 99.81
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 99.79
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 99.77
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 99.64
PLN02916 502 pectinesterase family protein 99.45
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information 
Probab=100.00  E-value=8.1e-34  Score=216.92  Aligned_cols=153  Identities=36%  Similarity=0.641  Sum_probs=144.0

Q ss_pred             CCchHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 042545           31 GEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVY  110 (183)
Q Consensus        31 ~~~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y  110 (183)
                      .++...|+++|++|+||++|+++|.++|+++.+|+++|+.++++.+..+++.+.+++.++.++.+++..+.++++|.+.|
T Consensus        26 ~~~~~~i~~~C~~t~~~~~C~~~L~~~~~~~~ad~~~la~~ai~~a~~~~~~~~~~i~~l~~~~~~~~~~~al~~C~~~y  105 (178)
T TIGR01614        26 NATQSLIKRICKKTEYPNFCISTLKSDPSSAKADLQGLANISVSAALSNASDTLDHISKLLLTKGDPRDKSALEDCVELY  105 (178)
T ss_pred             cchHHHHHHHHcCCCChHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999888899999999999999999999999999988767899999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhcC
Q 042545          111 DLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLLK  183 (183)
Q Consensus       111 ~~a~~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L~  183 (183)
                      ++++++|+++...+..++|+++++|+++|++++++|+|+|.+.++..++|+..+++++.+|++|+|+|+++|+
T Consensus       106 ~~a~~~L~~a~~~l~~~~~~d~~~~ls~a~~~~~tC~d~f~~~~~~~~~~l~~~~~~~~~l~s~alai~~~~~  178 (178)
T TIGR01614       106 SDAVDALDKALASLKSKDYSDAETWLSSALTDPSTCEDGFEELGGIVKSPLTKRNNNVKKLSSITLAIIKMLT  178 (178)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccchHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999987532278999999999999999999999985

This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
1xg2_B153 Crystal Structure Of The Complex Between Pectin Met 9e-18
2cj4_A150 Crystal Structure Of A Cell Wall Invertase Inhibito 1e-09
1rj1_A151 Crystal Structure Of A Cell Wall Invertase Inhibito 3e-09
2xqr_B149 Crystal Structure Of Plant Cell Wall Invertase In C 3e-09
1x90_A152 Crystal Structure Of Mutant Form B Of A Pectin Meth 5e-07
1x91_A153 Crystal Structure Of Mutant Form A Of A Pectin Meth 5e-07
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 153 Back     alignment and structure 
Iteration: 1

 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 33  ENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLN 92
           EN LI   C KT  P LC++ L S P S+  D+K L    ++ A A    T + +  L N
Sbjct: 2   ENHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTN 61
Query: 93  ETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSE 152
           +  D  ++   + C + Y  AI  +  A ++L SGDY+S   YA+     + TCE SF  
Sbjct: 62  QATDPKLKGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEG 121
Query: 153 FPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182
            P IP + L   +  L +LC IVL + NLL
Sbjct: 122 PPNIP-TQLHQADLKLEDLCDIVLVISNLL 150
>pdb|2CJ4|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From Tobacco At Ph 4.6 Length = 150 Back     alignment and structure
>pdb|1RJ1|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From Tobacco Length = 151 Back     alignment and structure
>pdb|2XQR|B Chain B, Crystal Structure Of Plant Cell Wall Invertase In Complex With A Specific Protein Inhibitor Length = 149 Back     alignment and structure
>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin Methylesterase Inhibitor From Arabidopsis Length = 152 Back     alignment and structure
>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin Methylesterase Inhibitor From Arabidopsis Length = 153 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 5e-41
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 3e-39
1x91_A153 Invertase/pectin methylesterase inhibitor family p 5e-35
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
 Score =  134 bits (339), Expect = 5e-41
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 5/153 (3%)

Query: 31  GEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKL 90
           G  N+L+E TC+ T    LC+KTL S   S+  D+  LA I++++  A  N     + KL
Sbjct: 1   GAMNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKL 60

Query: 91  LNETKDKAMRNCLDVCFQVYDLAI-YEIPTAIKYLESGDYDSAVQYANDGIIESDTCESS 149
            +     A +  L  C   Y + +   +P AI+ L  GD   A         ++  CE  
Sbjct: 61  RHSNPPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEY 120

Query: 150 FSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182
           F       KSP +  N  +  L  +   ++  L
Sbjct: 121 FKG----SKSPFSALNIAVHELSDVGRAIVRNL 149
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query183
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 100.0
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 100.0
1x91_A153 Invertase/pectin methylesterase inhibitor family p 100.0
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
Probab=100.00  E-value=9.5e-35  Score=215.54  Aligned_cols=149  Identities=35%  Similarity=0.571  Sum_probs=140.3

Q ss_pred             hHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHH
Q 042545           34 NDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLA  113 (183)
Q Consensus        34 ~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~~a  113 (183)
                      .+.|+.+|++|+||++|+++|.++|++..+|+++|+.++++.++.+++.+..++.++.+...+|+.+.+|++|.++|+++
T Consensus         3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~y~~a   82 (153)
T 1xg2_B            3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQATDPKLKGRYETCSENYADA   82 (153)
T ss_dssp             CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999877899999999999999999999999999988767899999999999999999


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhcC
Q 042545          114 IYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLLK  183 (183)
Q Consensus       114 ~~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L~  183 (183)
                      +++|++|+..+..++++++++|||+|+++++||+|||.+.++. ++||..++.++.+|++|+|+|+++|.
T Consensus        83 ~~~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~~~-~~~l~~~~~~~~~l~s~aLai~~~l~  151 (153)
T 1xg2_B           83 IDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEGPPNI-PTQLHQADLKLEDLCDIVLVISNLLP  151 (153)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHCCSSSCC-CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhcccchHHHHhccCCCC-CcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999976433 68899999999999999999999874
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 183
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 1e-36
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 1e-34
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Plant invertase/pectin methylesterase inhibitor
family: Plant invertase/pectin methylesterase inhibitor
domain: Invertase inhibitor
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  122 bits (307), Expect = 1e-36
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 5/150 (3%)

Query: 34  NDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNE 93
           N+L+E TC+ T    LC+KTL S   S+  D+  LA I++++  A  N     + KL + 
Sbjct: 1   NNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHS 60

Query: 94  TKDKAMRNCLDVCFQVYDLAI-YEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSE 152
               A +  L  C   Y + +   +P AI+ L  GD   A         ++  CE  F  
Sbjct: 61  NPPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFKG 120

Query: 153 FPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182
                KSP +  N  +  L  +   ++  L
Sbjct: 121 ----SKSPFSALNIAVHELSDVGRAIVRNL 146
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query183
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 100.0
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Plant invertase/pectin methylesterase inhibitor
family: Plant invertase/pectin methylesterase inhibitor
domain: Invertase inhibitor
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1e-34  Score=212.74  Aligned_cols=144  Identities=28%  Similarity=0.409  Sum_probs=137.8

Q ss_pred             HHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHH
Q 042545           35 DLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAI  114 (183)
Q Consensus        35 ~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~~a~  114 (183)
                      ++|+++|++|+||++|+++|.++|+++.+|+++|+.++++.++++++.+..++.++.+.+++|..+.+|++|.+.|++++
T Consensus         2 ~lI~~~C~~T~~~~~C~~sL~~~p~s~~ad~~~la~~av~~a~~~a~~~~~~i~~l~~~~~~~~~~~al~~C~e~y~~av   81 (147)
T d2cj4a1           2 NLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHSNPPAAWKGPLKNCAFSYKVIL   81 (147)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhcCCCCcHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999998888999999999999999999999999999988889999999999999999999


Q ss_pred             H-HHHHHHHHHhcCChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545          115 Y-EIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLL  182 (183)
Q Consensus       115 ~-~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L  182 (183)
                      + .|++|...+..++|+++++|+|+|++++++|+|+|.+.    ++||..+++.+.+|++|+|+|+++|
T Consensus        82 ~~~l~~a~~~l~~~~~~~~~~~lsaa~~~~~tC~d~f~~~----~spl~~~~~~~~~l~~ial~i~~~L  146 (147)
T d2cj4a1          82 TASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFKGS----KSPFSALNIAVHELSDVGRAIVRNL  146 (147)
T ss_dssp             HTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTTS----CCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhHHHHhhHHhCCC----CCcHHHHHHHHHHHHHHHHHHHHhh
Confidence            7 69999999999999999999999999999999999853    6899999999999999999999987
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure