Citrus Sinensis ID: 042557

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-----
Protein Sequence
MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKEETNGMNDETVELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKIEKELSPDREPEPESFEEETNSKVEGSENFGRINGLSSSENIDDGGSSPSKQQQLQQKKKKPFIRKFGSLLKKKQATTPK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccHHHHHHcHHHHHHHHHHcHHcccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHccHHcccHHHHHHccccccccHHcccccccHHHHHHHHHcHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccHccHHHHHEHHHHcccccHHHHHHcccHHHHHHHHcccccHHHHccccHHHHHccHHHHcccccccccccccccccccEEEEEEEcHHccEEEcccHHHccccccHHHHHccccccccccccccccEccccccccccccccHHHHHHccccHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIgrqkadldeserkhsmakNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQtaengeltdsekdydllpkvvefseenghargeekpkmdlpvqeckeqnlenskeetngmndETVELAAAKIDNvngklkedeskekeddSVEVEFKMWESCkiekelspdrepepesfeeetnskvegsenfgringlssseniddggsspskqQQLQQKKKKPFIRKFGSLLKKKQATTPK
Flexible Loop (DISEMBL)
maesyarnlveewkIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIgrqkadldeserkhsmaknetsemakTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLssqtehetyeaqIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAeweqkelhlvdcvkkseeensslekeINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQEneelrareadsvKKVEELSSLLEEAMAKkqtaengeltdsekdydlLPKVVEFSeenghargeekpkmdlpvQECKEQNlenskeetngmNDETVELAAAKidnvngklkedeskekeddsveveFKMWesckiekelspdrepepesfeeetnskvegsenfGRINGLSSSeniddggsspskqqqlqqkkkkpfirkfgsllkkkqattpk
Low Complexity Region (SEG)
MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINelensreeeekskkameslasalHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVkkseeensslekeINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADsvkkveelsslleeAMAKKQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKEETNGMNDETVELAAAKIDNVNGKLkedeskekeddsveveFKMWESCKIEKELSPDRepepesfeeeTNSKVEGSENFGRINGLSSSENIDDGGSSPSkqqqlqqkkkkPFIRKFGSLLKKKQATTPK
Disordered region (IsUnstruct)
***********EWKI******************************************************************************************************************************************************************************AQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIK****************ELHLVDC*************************************************VIY*****************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
********LVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQK********************AKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINE******************ASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKK********EKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKEETNGMNDETVELAAAKIDNVNG****************VEFKMWESCKIE***********************GSENFGRINGLSSSE*********************PFIRKFGSLL*********
Disordered Region (DISPRO)
*****ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQ***********KDYDLLPKVVEFSEEN**************************************************************DSVEVEFKMWESCKIEKELS******************************************************KPFIRKFGSLLKK*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAESYARNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSEMAKTxxxxxxxxxxxxxxxxxxxxxEKLAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKISKAEWEQKELHLVDCxxxxxxxxxxxxxxxxxxxxxxxxxxxxACATKEEEAQLRDSxxxxxxxxxxxxxxxxxxxxxSMKLKESxxxxxxxxxxxxxxxxxxxxxEADSVKKxxxxxxxxxxxxxxxxxxxxxELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKEETNGMNDETVELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKIEKELSPDREPEPESFEEETNSKVEGSENFGRINGLSSSENIDDGGSSPSKQQQLQQKKKKPFIRKFGSLLKKKQATTPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	545	2.2.26 [Sep-21-2011]
Q9LFE4	853	WEB family protein At5g16	yes	no	0.981	0.627	0.548	1e-123
Q9M8T5	806	WEB family protein At3g02	no	no	0.930	0.629	0.525	1e-110
F4I8B9	1345	Putative WEB family prote	no	no	0.664	0.269	0.539	7e-81
F4JJP1	1221	WEB family protein At4g27	no	no	0.700	0.312	0.494	1e-73

>sp|Q9LFE4|Y5673_ARATH WEB family protein At5g16730, chloroplastic OS=Arabidopsis thaliana GN=At5g16730 PE=1 SV=1

 Score =  443 bits (1139), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 304/554 (54%), Positives = 403/554 (72%), Gaps = 19/554 (3%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAES A +L  EW+ + +ELE Q EEA+KL+RSAS SL++VM+QLEG+NDKLHD E+EI 
Sbjct: 310 MAESNAHSLSNEWQSKAKELEEQLEEANKLERSASVSLESVMKQLEGSNDKLHDTETEIT 369

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
            LKE++  LE T+ +QK DL+ SE++    + E S+  K VE LK ELETVKEEK +AL 
Sbjct: 370 DLKERIVTLETTVAKQKEDLEVSEQRLGSVEEEVSKNEKEVEKLKSELETVKEEKNRALK 429

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
            E+ A S VQ L EEK KL+++LE+S+EEEEKSKKAMESLASALHEVS E RE KEKLLS
Sbjct: 430 KEQDATSRVQRLSEEKSKLLSDLESSKEEEEKSKKAMESLASALHEVSSEGRELKEKLLS 489

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
            Q +HE YE QI+DL++V+KATNEKYE+MLD+A+HEI +L + +++ K   + SK +WE 
Sbjct: 490 -QGDHE-YETQIDDLKLVIKATNEKYENMLDEARHEIDVLVSAVEQTKKHFESSKKDWEM 547

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           KE +LV+ VKK EE+ +S+ KE+NRL NLLK TEE+A A  ++EAQ +DSLKEVE E++Y
Sbjct: 548 KEANLVNYVKKMEEDVASMGKEMNRLDNLLKRTEEEADAAWKKEAQTKDSLKEVEEEIVY 607

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEA-MA 359
           +QETLG+A+AESMKLKE+ LDKETE Q+VI ENE+L+A+E  S+KK+EELS LLEEA +A
Sbjct: 608 LQETLGEAKAESMKLKENLLDKETEFQNVIHENEDLKAKEDVSLKKIEELSKLLEEAILA 667

Query: 360 KKQT-AENGELTDSEKDYDLLPKVVEFSEENGHARGEEK-PKMDLPVQECKEQNLENSKE 417
           KKQ   ENGEL++SEKDYDLLPKVVEFS ENGH   EEK  K++    E  ++ + N   
Sbjct: 668 KKQPEEENGELSESEKDYDLLPKVVEFSSENGHRSVEEKSAKVETLDHEPPQEQISNGNS 727

Query: 418 ETNGMNDETVELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKIE-KELSPDRE- 475
             NGM ++ V     +++    + K++   + +DDSVEV FKMWESC+IE KE  PD++ 
Sbjct: 728 NGNGMEEKEVN-GKPEVETEKKEKKDESQDDDKDDSVEVIFKMWESCQIEKKEAFPDKKS 786

Query: 476 PEPESFEEETNSKVEGSENFGRINGLSSSENIDDGGSSPSKQQQL----QQKKKKPFIRK 531
                 EEE +SK++ S+        +S+ENID+ G++ + + QL    + KKKK  + K
Sbjct: 787 ELESQEEEEDSSKIDESDK-------TSTENIDETGNALTAEDQLTMEKKIKKKKTLLGK 839

Query: 532 FGSLLKKKQATTPK 545
            G+LLKKK     K
Sbjct: 840 VGNLLKKKAPVNQK 853

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8T5|Y3293_ARATH WEB family protein At3g02930, chloroplastic OS=Arabidopsis thaliana GN=At3g02930 PE=2 SV=1

 Score =  399 bits (1026), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 287/546 (52%), Positives = 382/546 (69%), Gaps = 39/546 (7%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAESYA    +EW+ + +ELE + EEA+KL++ AS SL +V +QLE +N +LHD ESEI 
Sbjct: 299 MAESYAHGFADEWQNKAKELEKRLEEANKLEKCASVSLVSVTKQLEVSNSRLHDMESEIT 358

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
            LKEK+ LLEMT+  QK DL++SE+K  +A+ E+S+  K  E LK ELETV EEK QAL 
Sbjct: 359 DLKEKIELLEMTVASQKVDLEKSEQKLGIAEEESSKSEKEAEKLKNELETVNEEKTQALK 418

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
            E+ A SSVQ LLEEK K+++ELE+S+EEEEKSKKAMESLASALHEVS E+RE KEKLLS
Sbjct: 419 KEQDATSSVQRLLEEKKKILSELESSKEEEEKSKKAMESLASALHEVSSESRELKEKLLS 478

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
              ++  YE QIEDL++V+KATN KYE+MLD+A+HEI +L N +++ K + + +  +WE 
Sbjct: 479 RGDQN--YETQIEDLKLVIKATNNKYENMLDEARHEIDVLVNAVEQTKKQFESAMVDWEM 536

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           +E  LV+ VK+ +EE SS+ KE+NRL NL+K T+E+A A+ E+E+Q+RD LKEVE EVIY
Sbjct: 537 REAGLVNHVKEFDEEVSSMGKEMNRLGNLVKRTKEEADASWEKESQMRDCLKEVEDEVIY 596

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           +QETL +A+AE++KLK   LDKETE QS++ EN+ELR ++ DS+KK++ELS LLEEA+AK
Sbjct: 597 LQETLREAKAETLKLKGKMLDKETEFQSIVHENDELRVKQDDSLKKIKELSELLEEALAK 656

Query: 361 KQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKEET- 419
           K   ENGEL++SEKDYDLLPKVVEFSEENG+   EEK                +SK ET 
Sbjct: 657 KHIEENGELSESEKDYDLLPKVVEFSEENGYRSAEEK----------------SSKVETL 700

Query: 420 NGMNDETVELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKIEKELSPDREPEPE 479
           +GMN +  E             KE + +  ED++VEVEFKMWESC+IEK+    +E   E
Sbjct: 701 DGMNMKLEEDTEK---------KEKKERSPEDETVEVEFKMWESCQIEKKEVFHKESAKE 751

Query: 480 SFEEETNSKVEGSENFGRINGLSSSENIDDGGSSPSKQQQLQQKKKKPFIRKFGSLLKKK 539
             EEE  + V+ S+    +NGL+  +            ++ ++KKKK    K G+LLKKK
Sbjct: 752 --EEEDLNVVDQSQKTSPVNGLTGED---------ELLKEKEKKKKKTLFGKVGNLLKKK 800

Query: 540 QATTPK 545
                K
Sbjct: 801 GPVNQK 806

Arabidopsis thaliana (taxid: 3702)

>sp|F4I8B9|Y1501_ARATH Putative WEB family protein At1g65010, chloroplastic OS=Arabidopsis thaliana GN=At1g65010 PE=1 SV=1

 Score =  301 bits (772), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 196/363 (53%), Positives = 265/363 (73%), Gaps = 1/363 (0%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAES   + VEEWK +V ELE + EE+++ K SASES+++VM+QL   N  LH+ +S+ A
Sbjct: 300 MAESCTNSSVEEWKNKVHELEKEVEESNRSKSSASESMESVMKQLAELNHVLHETKSDNA 359

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
           A KEK+ LLE TI  Q+ DL+E  R+  +AK E S++   VES+K ELE  +EEK +AL+
Sbjct: 360 AQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLVESIKSELEISQEEKTRALD 419

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
           NEK A S++QNLL+++ +L  ELE  + EEEKSKK MESL  AL E S E+ EAK  LL 
Sbjct: 420 NEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLV 479

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
            Q E +  E+Q++ L++  K TNEKYE ML+DA++EI  L + +   ++E + SKA WEQ
Sbjct: 480 CQEELKNCESQVDSLKLASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFENSKAGWEQ 539

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           KELHL+ CVKKSEEENSS ++E++RLVNLLKE+EEDACA KEEEA L+++LK  E EV Y
Sbjct: 540 KELHLMGCVKKSEEENSSSQEEVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKY 599

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           +QETLG+A+AESMKLKES LDKE +L++V  E   LR  E   ++K+EELS  ++E++  
Sbjct: 600 LQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEELSK-VKESLVD 658

Query: 361 KQT 363
           K+T
Sbjct: 659 KET 661

Arabidopsis thaliana (taxid: 3702)

>sp|F4JJP1|Y4759_ARATH WEB family protein At4g27595, chloroplastic OS=Arabidopsis thaliana GN=At4g27595 PE=2 SV=1

 Score =  277 bits (709), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 193/390 (49%), Positives = 269/390 (68%), Gaps = 8/390 (2%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           M ESYA NL  EWK    E++ Q EE+ +LK SASESLD  M+QLE NN  LH+AE   A
Sbjct: 312 MVESYANNLAAEWK---NEVDKQVEESKELKTSASESLDLAMKQLEENNHALHEAELGNA 368

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
            LKEKV  L  TIGRQ+ DL+ES+ +  ++K ETS++ K VES+K +LET + EK +AL 
Sbjct: 369 TLKEKVESLVTTIGRQENDLEESQHQVCISKEETSKLEKLVESIKSDLETTQGEKVRALL 428

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
           NEK A S +QNLL EK +L  ELEN ++EEEK KKAMESL   L EVSVEA+EAKEKLL+
Sbjct: 429 NEKTATSQIQNLLSEKTELATELENCKKEEEKIKKAMESLTLDLQEVSVEAKEAKEKLLT 488

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
            Q E E    QIE L++  K TNEK+  ML+DA++EI  L + ++  ++E   SK EWEQ
Sbjct: 489 CQAELELCGVQIESLKLAEKDTNEKHGKMLEDARNEIDGLKSSLENTENEFFNSKTEWEQ 548

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           +ELHL+ CVKK E+ N S+++E++++ NLL   E +ACA KEE+A+++ + KE+E E+  
Sbjct: 549 RELHLMLCVKKLEDGNFSVQEELSKVKNLLHLKEVEACAAKEEDAKMQTNRKELEEEIKD 608

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           +QE +  A+A+SMKLKES ++KE EL++   EN +LR  E  S+ K+++LS  ++E++  
Sbjct: 609 LQEIVEVAKADSMKLKESLVEKEDELKNTAAENRKLREMEVSSIDKIDQLSK-VKESLVD 667

Query: 361 KQTAENGELTDSE----KDYDLLPKVVEFS 386
           K+T     + ++E    K+ D L K+ E S
Sbjct: 668 KETKLQNIIQEAEELRVKEIDYLKKIEELS 697

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	545
224145901	641	predicted protein [Populus trichocarpa]	0.994	0.845	0.721	0.0
255558081	841	ATP binding protein, putative [Ricinus c	0.977	0.633	0.746	0.0
359489869	846	PREDICTED: uncharacterized protein LOC10	0.992	0.639	0.711	0.0
297737283	825	unnamed protein product [Vitis vinifera]	0.954	0.630	0.695	0.0
449460688	879	PREDICTED: WEB family protein At5g16730,	0.996	0.617	0.682	1e-174
356538654	851	PREDICTED: uncharacterized protein LOC10	0.992	0.635	0.666	1e-164
224124120	713	predicted protein [Populus trichocarpa]	0.741	0.566	0.775	1e-164
356538469	861	PREDICTED: uncharacterized protein LOC10	0.988	0.626	0.622	1e-158
356497411	859	PREDICTED: uncharacterized protein LOC10	0.988	0.627	0.643	1e-157
356543309	850	PREDICTED: uncharacterized protein LOC10	0.992	0.636	0.656	1e-156

>gi|224145901|ref|XP_002325804.1| predicted protein [Populus trichocarpa] gi|222862679|gb|EEF00186.1| predicted protein [Populus trichocarpa]

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/546 (72%), Positives = 460/546 (84%), Gaps = 4/546 (0%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAESYARNLVEEWK RVEELEMQA EA+KL+RSASESL + M+QLE NN  LHDAE+E+A
Sbjct: 99  MAESYARNLVEEWKNRVEELEMQAAEANKLERSASESLGSFMKQLEANNVLLHDAETEMA 158

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
           ALKEKVGLLEMTI RQK DL+ESE    M K E   M K VESL  ELETVKEEKAQALN
Sbjct: 159 ALKEKVGLLEMTIRRQKGDLEESEHSLGMVKEEALFMEKKVESLMSELETVKEEKAQALN 218

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
           NEKLAASSVQ+LLEEK+K++ ELEN+R+EE KSKKAMESLASALHEVS EAREAKE+L+S
Sbjct: 219 NEKLAASSVQSLLEEKNKIVTELENARDEEAKSKKAMESLASALHEVSAEAREAKERLVS 278

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
           +  EHE YE QIEDLR+VLKATNEKYE++LDDAKHEI LL   ++E+K+E K SKA W+Q
Sbjct: 279 NLVEHENYETQIEDLRLVLKATNEKYETVLDDAKHEIELLKKTVEESKNEFKNSKAMWDQ 338

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           KE +LV+ V+KSEEEN SLEKEI+RLVNL K+TEE+AC  ++EEA L+DSLKEVEAEVI 
Sbjct: 339 KEENLVNSVRKSEEENISLEKEIDRLVNLQKQTEEEACGMRDEEAHLKDSLKEVEAEVIS 398

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           +QE LG+A+ ESMKLKES L KE ELQ++I EN+ELR +EA S+KKVEELS LLEEAMAK
Sbjct: 399 LQEALGEAKVESMKLKESLLAKENELQNIILENKELRTKEASSLKKVEELSKLLEEAMAK 458

Query: 361 KQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMD-LPVQECKEQNLENSKEET 419
            QT EN ELTDSEKDYDLLPK++EFSEENGH R EEKPK++ LP Q+  E   EN+ E+ 
Sbjct: 459 IQTVENAELTDSEKDYDLLPKMIEFSEENGHVR-EEKPKVEELPPQQTSELKTENAMEQF 517

Query: 420 NGMNDETVELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKIEKELSPDREPEPE 479
           NG+ +E V++ A KI+NVNGK KEDESKEKED+SVEVEFKMWESCKIEKE SP+RE E E
Sbjct: 518 NGVTNEAVQMDAHKIENVNGKPKEDESKEKEDNSVEVEFKMWESCKIEKEFSPEREMEQE 577

Query: 480 SFEEETNSKVEGSENFGRINGLSSSENIDDGGSSPSKQQQLQQKKKKPFIRKFGSLLKKK 539
           SFEE+ +SKV+G E+F + NGLSS+EN+DDGGSSP+KQQ  QQKKKKP +RKFG+LLKKK
Sbjct: 578 SFEEKVDSKVDGGESFDQTNGLSSTENVDDGGSSPTKQQ--QQKKKKPLLRKFGNLLKKK 635

Query: 540 QATTPK 545
             +  K
Sbjct: 636 GTSNQK 641

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558081|ref|XP_002520069.1| ATP binding protein, putative [Ricinus communis] gi|223540833|gb|EEF42393.1| ATP binding protein, putative [Ricinus communis]

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/540 (74%), Positives = 467/540 (86%), Gaps = 7/540 (1%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAESYAR+LV+EWK RV+ELEMQ EEA++L+RSASESL +VM+QLEGNND LHDAE+EIA
Sbjct: 302 MAESYARSLVKEWKSRVDELEMQIEEANRLERSASESLCSVMKQLEGNNDLLHDAENEIA 361

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
           ALKEKVGLLEMTI RQK DL+ESE + S+AK ET +M K V+SLK ELE VKEEKAQALN
Sbjct: 362 ALKEKVGLLEMTIARQKGDLEESEHRLSVAKEETCDMVKKVQSLKAELEVVKEEKAQALN 421

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
           NEKLAASSVQ+LLEEK+KLI ELENSREEEEKSKKAMESLASALHEVS EAREAKEKL S
Sbjct: 422 NEKLAASSVQSLLEEKNKLITELENSREEEEKSKKAMESLASALHEVSAEAREAKEKLFS 481

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
           +Q EHE+YE QIEDLR+VLK  N++YE+++DD KHEI LL N I+E+K+E   SK EWEQ
Sbjct: 482 NQVEHESYETQIEDLRLVLKEANQRYETVIDDTKHEIDLLKNTIEESKNEFLNSKTEWEQ 541

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           KE +L++CVKKS+EENSSLE+EI+RLVNLLK+TEE+AC T+EEEAQL+DSLKEVEAEVI 
Sbjct: 542 KEQNLMNCVKKSDEENSSLEREIDRLVNLLKQTEEEACITREEEAQLKDSLKEVEAEVIS 601

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           +QETLG+A+ ES+KLKES LDKE ELQ++IQENEELR REA S KKVEELS LLEEAMAK
Sbjct: 602 LQETLGEAKVESLKLKESLLDKENELQNLIQENEELRTREAVSQKKVEELSKLLEEAMAK 661

Query: 361 KQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKEETN 420
           KQT ENGELTDSEKDYDLLPKVVEFSEENGH   EEK KM+ P+ +   ++L NS+E+ N
Sbjct: 662 KQTEENGELTDSEKDYDLLPKVVEFSEENGHV-SEEKSKMEHPLHQ--HEDLGNSEEQNN 718

Query: 421 GMNDETVELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKIE-KELSPDREPEPE 479
           G+ ++++    AK +NVNGK K DESKEKEDDSVEVEFKMWESCKIE KE SP+RE E E
Sbjct: 719 GLKNDSIPTEGAKFENVNGKPK-DESKEKEDDSVEVEFKMWESCKIEKKEFSPERETEQE 777

Query: 480 SFEEETNSKVEGSENFGRINGLSSSENIDDGGSSPSKQQQLQQKKKKPFIRKFGSLLKKK 539
           SFE+E +SK EG E F +INGLS +EN++DGG SPSKQQ  QQKKKKP +RKFGSLLKKK
Sbjct: 778 SFEDEGDSKAEGGEGFDQINGLSLTENVEDGGCSPSKQQ--QQKKKKPLLRKFGSLLKKK 835

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489869|ref|XP_002270776.2| PREDICTED: uncharacterized protein LOC100249386 [Vitis vinifera]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/548 (71%), Positives = 473/548 (86%), Gaps = 7/548 (1%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAESYARNLV+EWK RVEELE + EEA +L++SA+ESLD+VM+QLEGNN  LHDAESEIA
Sbjct: 303 MAESYARNLVQEWKQRVEELETRVEEATRLEKSATESLDSVMQQLEGNNGLLHDAESEIA 362

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
           ALKEKVGLLE++IGRQK D +ESER+  +AK E SEM K VESLK ELET+KEEKAQALN
Sbjct: 363 ALKEKVGLLEISIGRQKGDFEESERRLEVAKQEASEMGKMVESLKAELETLKEEKAQALN 422

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
           NEKLAASSVQNLLEEK+KL+N+LENS++EEEKSKKAMESLASALHEVS EAREAKEKLL+
Sbjct: 423 NEKLAASSVQNLLEEKNKLLNDLENSKDEEEKSKKAMESLASALHEVSSEAREAKEKLLA 482

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
           +Q E E Y+ QIEDL++VLKATNEKYE++LDDAKHE+ LLT+ I+++K E + SKAEWEQ
Sbjct: 483 AQGEQEMYDTQIEDLKMVLKATNEKYETLLDDAKHEVELLTSTIEQSKREFETSKAEWEQ 542

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           +ELHLV+CVK+S+E+N+SLEKE+NRLV++L E E++ACATKEE A+L+ +LKE E+EVIY
Sbjct: 543 QELHLVNCVKQSQEQNASLEKEVNRLVSVLAENEQEACATKEEGAKLKATLKEAESEVIY 602

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           ++E LG+A+AESM+LKE+ LDKE ELQ+VIQENEELR+REA S+KKVEELS LLEEA AK
Sbjct: 603 LKEVLGEAKAESMRLKENLLDKENELQNVIQENEELRSREATSLKKVEELSKLLEEATAK 662

Query: 361 K--QTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKEE 418
           K  +T EN ELTDSEKDYDLLPKVVEFSEENG+AR EEKPK ++P Q+C+E    + +EE
Sbjct: 663 KETETEENEELTDSEKDYDLLPKVVEFSEENGNAR-EEKPKKEIPSQQCEEPTKADLQEE 721

Query: 419 TNGMNDETVELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKI-EKELSPDREPE 477
           +  + + TV+   AK +N+NGK K+DESKEKEDDSVE EFKMWESCKI EK+ SP+RE E
Sbjct: 722 SKPVKEGTVQTNTAKFENLNGKPKDDESKEKEDDSVEGEFKMWESCKIEEKDYSPERETE 781

Query: 478 PESFEEETNSKVEGSENFGRINGLSSSENIDDGGSSPSKQQQLQQKKKKPFIRKFGSLLK 537
             SFEE+ +SK EG ++F +INGL SSEN+D+GGSSP+KQQ  QQKKK+P +RKFGSLLK
Sbjct: 782 HGSFEEDVDSKAEGGDSFDQINGL-SSENLDNGGSSPTKQQ--QQKKKRPLLRKFGSLLK 838

Query: 538 KKQATTPK 545
           KK  T  K
Sbjct: 839 KKGTTNQK 846

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737283|emb|CBI26484.3| unnamed protein product [Vitis vinifera]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/548 (69%), Positives = 459/548 (83%), Gaps = 28/548 (5%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAESYARNLV+EWK RVEELE + EEA +L++SA+ESLD+VM+QLEGNN  LHDAESEIA
Sbjct: 303 MAESYARNLVQEWKQRVEELETRVEEATRLEKSATESLDSVMQQLEGNNGLLHDAESEIA 362

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
           ALKEKVGLLE++IGRQK D +ESER+  +AK E SEM K VESLK ELET+KEEKAQALN
Sbjct: 363 ALKEKVGLLEISIGRQKGDFEESERRLEVAKQEASEMGKMVESLKAELETLKEEKAQALN 422

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
           NEKLAASSVQNLLEEK+KL+N+LENS++EEEKSKKAMESLASALHEVS EAREAKEKLL+
Sbjct: 423 NEKLAASSVQNLLEEKNKLLNDLENSKDEEEKSKKAMESLASALHEVSSEAREAKEKLLA 482

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
           +Q E E Y+ QIEDL++VLKATNEKYE++LDDAKHE+ LLT+ I+++K E + SKAEWEQ
Sbjct: 483 AQGEQEMYDTQIEDLKMVLKATNEKYETLLDDAKHEVELLTSTIEQSKREFETSKAEWEQ 542

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           +ELHLV+CVK+S+E+N+SLEKE+NRLV++L E E++ACATKEE A+L+ +LKE E+EVIY
Sbjct: 543 QELHLVNCVKQSQEQNASLEKEVNRLVSVLAENEQEACATKEEGAKLKATLKEAESEVIY 602

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           ++E LG+A+AESM+LKE+ LDKE ELQ+VIQENEELR+REA S+KKVEELS LLEEA AK
Sbjct: 603 LKEVLGEAKAESMRLKENLLDKENELQNVIQENEELRSREATSLKKVEELSKLLEEATAK 662

Query: 361 K--QTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKEE 418
           K  +T EN ELTDSEKDYDLLPKVVEFSEENG+AR EEKPK ++P Q+C+E    + +EE
Sbjct: 663 KETETEENEELTDSEKDYDLLPKVVEFSEENGNAR-EEKPKKEIPSQQCEEPTKADLQEE 721

Query: 419 TNGMNDETVELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKI-EKELSPDREPE 477
           +                       +DESKEKEDDSVE EFKMWESCKI EK+ SP+RE E
Sbjct: 722 SK---------------------PDDESKEKEDDSVEGEFKMWESCKIEEKDYSPERETE 760

Query: 478 PESFEEETNSKVEGSENFGRINGLSSSENIDDGGSSPSKQQQLQQKKKKPFIRKFGSLLK 537
             SFEE+ +SK EG ++F +INGL SSEN+D+GGSSP+KQQ  QQKKK+P +RKFGSLLK
Sbjct: 761 HGSFEEDVDSKAEGGDSFDQINGL-SSENLDNGGSSPTKQQ--QQKKKRPLLRKFGSLLK 817

Query: 538 KKQATTPK 545
           KK  T  K
Sbjct: 818 KKGTTNQK 825

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460688|ref|XP_004148077.1| PREDICTED: WEB family protein At5g16730, chloroplastic-like [Cucumis sativus] gi|449531197|ref|XP_004172574.1| PREDICTED: WEB family protein At5g16730, chloroplastic-like [Cucumis sativus]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 376/551 (68%), Positives = 446/551 (80%), Gaps = 8/551 (1%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAE+YA  LVEEWK R EE+E + + A+KL+RSASESLD+VM+QLE NND LH+AE EIA
Sbjct: 330 MAETYAHGLVEEWKNRAEEMETKLDSANKLERSASESLDSVMKQLEHNNDLLHNAELEIA 389

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
           ALKEKVGLLEMT+ RQK DL ESE     AK E SEM K V SL+ +LETV EEK QALN
Sbjct: 390 ALKEKVGLLEMTVKRQKEDLKESEHHLHRAKEEASEMEKLVASLRAQLETVNEEKTQALN 449

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
           NEKLAASSVQ+LLEEK++L+NELE S++EEEKSKKAMESLASALHE+S EARE KEKLLS
Sbjct: 450 NEKLAASSVQSLLEEKNQLLNELETSKDEEEKSKKAMESLASALHEISTEARETKEKLLS 509

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
           SQ + E YE+QIE+L++VLKATNEKYE+ML+++ HEI +LT+ I+++K E + SKAEWE+
Sbjct: 510 SQADQENYESQIENLKLVLKATNEKYENMLENSNHEIDILTSTIEKSKHEYENSKAEWEE 569

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           KELHLVD VKKSEEENSSL+KEI+RLVNLLK+TEE+AC  +EEEAQL+DSLKEVEAEVIY
Sbjct: 570 KELHLVDAVKKSEEENSSLDKEIDRLVNLLKQTEEEACKMREEEAQLKDSLKEVEAEVIY 629

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           +QE LG+A++ESMKLKES LDKE E QS+ QENEEL  REA S+KKV+ELS LLEEA AK
Sbjct: 630 LQEALGEAKSESMKLKESLLDKENEFQSIHQENEELLTREAASLKKVDELSKLLEEASAK 689

Query: 361 KQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKEETN 420
           KQT ENGE TDSEKDYDLLPKVVEFSEENG  R EEK K++ P+    E++        N
Sbjct: 690 KQTMENGEPTDSEKDYDLLPKVVEFSEENGK-RQEEKTKVEPPIPIEHEEHKFEFPWVGN 748

Query: 421 GMNDETVEL--AAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKIE-KELSPD-REP 476
           G +DE  E   +AA + N N K KE E KEKEDDSV+VE+KMWESCKIE KE S +  EP
Sbjct: 749 GASDEKTEKTDSAATLQNGNDKPKEAEKKEKEDDSVKVEYKMWESCKIEKKEFSQEGGEP 808

Query: 477 EPESFEEETNSKVEGSENFGRINGLSSSENIDDGGSSPS--KQQQLQQKKKKPFIRKFGS 534
           E ES ++ET+SK EG E+F  ING+ SSEN+DDGG SPS  ++QQ QQKKKKP ++KFG 
Sbjct: 809 EHESIDDETDSKPEGGESFDPINGV-SSENLDDGGHSPSKQQEQQQQQKKKKPLLKKFGY 867

Query: 535 LLKKKQATTPK 545
           LLKKK +   K
Sbjct: 868 LLKKKNSVNQK 878

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538654|ref|XP_003537816.1| PREDICTED: uncharacterized protein LOC100808226 [Glycine max]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 369/554 (66%), Positives = 452/554 (81%), Gaps = 13/554 (2%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAESYAR+L+EEW  +VEELEM+  EA+KL+RSASESL++VM+QLEGNND LH+AESE+A
Sbjct: 302 MAESYARSLLEEWHKKVEELEMRIGEANKLERSASESLESVMKQLEGNNDLLHEAESEVA 361

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
            LKEKV LLEMTIGRQ+AD+++S+R+   AK E+ E +K VE+L  ELE VKEEKAQALN
Sbjct: 362 TLKEKVELLEMTIGRQRADVEDSQRQLCKAKEESLEKSKEVEALTSELERVKEEKAQALN 421

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
           +EKLAASSVQ LLEEK+KLI+ELENSR+EEEKSKKAMESLASALHEVS EAREAKE LL+
Sbjct: 422 DEKLAASSVQALLEEKNKLISELENSRDEEEKSKKAMESLASALHEVSAEAREAKENLLN 481

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
            Q E E+Y+AQIEDL++VLKATNEKY+SMLD+A+HEI +L   I+ +K   + SKAEWEQ
Sbjct: 482 IQAESESYDAQIEDLKLVLKATNEKYKSMLDEARHEIDVLVCSIENSKSAFENSKAEWEQ 541

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           +EL LV C+KK+EEE  SLEKEI RL+ LLKETEE+A A +EEEAQL+++LKEVEAE I 
Sbjct: 542 RELQLVSCIKKNEEEKVSLEKEIKRLLYLLKETEEEANANREEEAQLKENLKEVEAEAIQ 601

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           +QE L +  AE+MKLKE+ LDKE ELQ + QEN+ELR REA+S+KKVEELS LLEEA  +
Sbjct: 602 LQEALKETTAENMKLKENLLDKENELQCMFQENDELRIREAESIKKVEELSKLLEEATTR 661

Query: 361 KQ-TAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKEET 419
              T ENG+LTDSEKDYDLLPKVVEFSEENGH  GE+  K++L V +  E+  +NS +E 
Sbjct: 662 NHYTEENGDLTDSEKDYDLLPKVVEFSEENGHV-GEDISKVELSVNQ--EELKQNSIQED 718

Query: 420 NGM-NDETVELAAAKIDNVNGKLKEDESKEKE-----DDSVEVEFKMWESCKIE-KELSP 472
           + + ND+  ++ + K + V+ KL+E+ESKEKE     DDSVEVE+KMWESCKIE KE SP
Sbjct: 719 SILSNDKAEKIESPKYEEVSEKLEENESKEKEGSKAKDDSVEVEYKMWESCKIEKKEFSP 778

Query: 473 DREPEPESFEEETNSKV-EGSENFGRINGLSSSENIDDGGSSPSKQQQLQQKKKKPFIRK 531
           +RE EPESFEEE NSK+ EG E+F +ING + +ENID+ GS PSKQQQ  +KKKKP + K
Sbjct: 779 EREAEPESFEEEVNSKIEEGGESFDKINGNAVTENIDESGSPPSKQQQ-LKKKKKPLLGK 837

Query: 532 FGSLLKKKQATTPK 545
           FGSLLKKK A+  K
Sbjct: 838 FGSLLKKKGASNQK 851

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124120|ref|XP_002319250.1| predicted protein [Populus trichocarpa] gi|222857626|gb|EEE95173.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 314/405 (77%), Positives = 352/405 (86%), Gaps = 1/405 (0%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAESYA NLVEEWK RVEELEMQAEEA+KL+RSASESL +VM+QLE NND LHDAE+EIA
Sbjct: 305 MAESYACNLVEEWKNRVEELEMQAEEANKLERSASESLGSVMKQLEANNDLLHDAETEIA 364

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
           ALKEKVGLLEMTI RQK DL+ESE    M K E S M K VESL  ELETVKEEKAQALN
Sbjct: 365 ALKEKVGLLEMTIRRQKGDLEESEHSLGMVKEEASVMVKKVESLMSELETVKEEKAQALN 424

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
           NEKLAASSVQ+LLEEK+KLI ELENSR+EEEKSKKAMESLASALHEVS EAREAKE+L+S
Sbjct: 425 NEKLAASSVQSLLEEKNKLITELENSRDEEEKSKKAMESLASALHEVSAEAREAKERLVS 484

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
           +Q EHE YE QIEDLR+VLKATNEKYE++LDDAKHEI LL N ++E+K++ + SKAEW+Q
Sbjct: 485 NQVEHENYETQIEDLRLVLKATNEKYETVLDDAKHEIDLLRNTVEESKNQFQNSKAEWDQ 544

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           KE +L + ++KSEEENSSLEKEI+RLVNLL  TEE+AC  ++EEA L+DSLKEVEAEVI 
Sbjct: 545 KEKNLGNYLRKSEEENSSLEKEIDRLVNLLTHTEEEACGMRDEEAHLKDSLKEVEAEVIS 604

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           +QE LG+AR ESMKLKES LDKE E Q++ QENEELR +EA S KKVEELS LLEEAMAK
Sbjct: 605 LQEALGEARVESMKLKESLLDKENEFQNIFQENEELRTKEASSHKKVEELSKLLEEAMAK 664

Query: 361 KQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQ 405
           KQ  ENGELTDSEKDYDLLPKVVEFSEENGH R EEKP M+LP+Q
Sbjct: 665 KQVEENGELTDSEKDYDLLPKVVEFSEENGHVR-EEKPTMELPLQ 708

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538469|ref|XP_003537726.1| PREDICTED: uncharacterized protein LOC100803802 [Glycine max]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 342/549 (62%), Positives = 427/549 (77%), Gaps = 10/549 (1%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAESYA +L+EEW  +VEELE++ EEA+KL+RSAS SL++VM+QLE N D LH+AESEI+
Sbjct: 319 MAESYAHSLLEEWTKKVEELEVRVEEANKLERSASVSLESVMKQLEVNKDLLHEAESEIS 378

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
           +LKEKVGLLEMTI RQ  DL++SE    +AK E+ E++K VESL+ ELETVKEEKA ALN
Sbjct: 379 SLKEKVGLLEMTIARQTGDLEDSECCLHVAKEESLELSKKVESLESELETVKEEKALALN 438

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
           NEKL+ASSVQ LLEEK KLINELE  R+EEEK+KKAMESLASALHEVS EAR++KEKLL+
Sbjct: 439 NEKLSASSVQTLLEEKDKLINELEILRDEEEKTKKAMESLASALHEVSAEARDSKEKLLA 498

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
           +  EHE YE QIEDL++VLKATNEKYESML+DA+HEI  LT  ++ +K   + SKAEWEQ
Sbjct: 499 NHVEHENYETQIEDLKLVLKATNEKYESMLNDARHEIDTLTCSVENSKSNIENSKAEWEQ 558

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           +E HLV+C+K +EEENSSL  EINRL+ LLK+TEE+A A +EEE QL+++LKEVEAEVI+
Sbjct: 559 REHHLVNCLKLTEEENSSLGNEINRLIRLLKDTEEEANAKREEEGQLKENLKEVEAEVIH 618

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           +QE L +A+AESMKLKES LDKE E Q+V QENEELR RE+ S+KKVEELS +L+E  ++
Sbjct: 619 LQEELKEAKAESMKLKESLLDKENEFQNVFQENEELRLRESTSIKKVEELSKMLDEVTSR 678

Query: 361 KQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEE--KPKMDLPVQECKEQNLENSKEE 418
            QT ENG+LT+SEKDYD+LPKVVEFSEENGH  GE+    K++L   E  E   +  +EE
Sbjct: 679 NQTEENGDLTESEKDYDMLPKVVEFSEENGHG-GEDLLSKKVELSANE--EGLKQRVQEE 735

Query: 419 TNGMNDETVELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKIEKE--LSPDREP 476
           +  M+D++ +  +   +NVNGK+ ED SK K D  V+ EFKMWESCKIEK+         
Sbjct: 736 SIPMDDKSEKTESPNPENVNGKVNEDASKGK-DALVDAEFKMWESCKIEKKEFSPEREPE 794

Query: 477 EPESFEEETNSKVEGSENFGRINGLSSSENIDDGGSSPSKQQQLQQKKKKPFIRKFGSLL 536
                EEE +SK+EG E F ++NG S  E +DD G+SPSKQQ   +KKKKP + KFGSLL
Sbjct: 795 PESFEEEEVDSKIEGGEGFDQVNGTSLKEKVDDIGNSPSKQQ--VKKKKKPLLGKFGSLL 852

Query: 537 KKKQATTPK 545
           KK+  +  K
Sbjct: 853 KKRGGSNHK 861

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497411|ref|XP_003517554.1| PREDICTED: uncharacterized protein LOC100795783 [Glycine max]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 352/547 (64%), Positives = 443/547 (80%), Gaps = 8/547 (1%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAESYA +L+EEW  +VEELE++ EEA+KL+RSAS SL+++M+QLEGN D LH+AESEI+
Sbjct: 319 MAESYAHSLLEEWTKKVEELEVRVEEANKLERSASMSLESLMKQLEGNKDLLHEAESEIS 378

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
           +LKEKVGLLEMTIGRQ+ DL++SER   +AK E+ E++K VESL+ ELETVKEEKAQALN
Sbjct: 379 SLKEKVGLLEMTIGRQRGDLEDSERCLDVAKEESLELSKKVESLESELETVKEEKAQALN 438

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
           NEKL+ASSVQ LLEEK KLINELE S++EEEK+KKAMESLASALHEVS EAR+AKEKLL+
Sbjct: 439 NEKLSASSVQTLLEEKDKLINELEISKDEEEKTKKAMESLASALHEVSAEARDAKEKLLA 498

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
           +  E E YE QIEDL++VLKA+NEK ESML+DA+HEI +LT  ++ +    +  KAEWEQ
Sbjct: 499 NHVERENYETQIEDLKLVLKASNEKCESMLNDARHEIDVLTCSVENSNSNIENYKAEWEQ 558

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           +E HLV+C+K +EEENSSL  EINRL+ LLKETEE+A A +EEE QL+++LKEVEAEVI+
Sbjct: 559 REHHLVNCLKLTEEENSSLGNEINRLIRLLKETEEEANAKREEEGQLKENLKEVEAEVIH 618

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           +QE L +A+AESMKLKES LDKE E Q++ +ENEELR RE+ S+KKVEELS +L+E  ++
Sbjct: 619 LQEELKEAKAESMKLKESLLDKENEFQNIFEENEELRLRESTSIKKVEELSKMLDEVTSR 678

Query: 361 KQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENS-KEET 419
            QT ENG+LTDSEKDYD+LPKVVEFSEENGH   +   K++L      E+ L+ S +EE+
Sbjct: 679 NQTEENGDLTDSEKDYDMLPKVVEFSEENGHGGEDLSKKVELSAN---EEGLKQSLQEES 735

Query: 420 NGMNDETVELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKIEKE-LSPDREPEP 478
             ++D+  +  + K +NVNGK+ E+ SKEK DDSVE EFKMWESCKIEK+   P+REPEP
Sbjct: 736 IPLDDKYEKTESPKPENVNGKVNEEVSKEK-DDSVEAEFKMWESCKIEKKEFLPEREPEP 794

Query: 479 ESFEEETNSKVEGSENFGRINGLSSSENIDDGGSSPSKQQQLQQKKKKPFIRKFGSLLKK 538
           ESFEEE +SK+EG+E F ++NG S  E +DD G+SPSKQQ   +KKKK  + KFGSLLKK
Sbjct: 795 ESFEEEVDSKIEGAEGFDQVNGTSIKEKVDDSGNSPSKQQ--VKKKKKALLGKFGSLLKK 852

Query: 539 KQATTPK 545
           K  +  K
Sbjct: 853 KGGSNHK 859

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543309|ref|XP_003540104.1| PREDICTED: uncharacterized protein LOC100777446 [Glycine max]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 363/553 (65%), Positives = 451/553 (81%), Gaps = 12/553 (2%)

Query: 1   MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
           MAESY+R+L+EEW  +VEELEM+ EEA+KL+RSASESL++VM+QLEGNND L +AESE+A
Sbjct: 302 MAESYSRSLLEEWHKKVEELEMRIEEANKLERSASESLESVMKQLEGNNDLLQEAESEVA 361

Query: 61  ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
            L+EKVGLLEMTIGRQ+AD+++SER+  +AK E+ E +K VE+LK ELE VKEEKAQALN
Sbjct: 362 TLEEKVGLLEMTIGRQRADVEDSERQLRLAKEESLEKSKEVEALKSELEKVKEEKAQALN 421

Query: 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180
           +EKLAASSVQ LLEEK+KLI+ELENSR+EEEKSKKAMESLASALHEVS EAREAKE LL+
Sbjct: 422 DEKLAASSVQALLEEKNKLISELENSRDEEEKSKKAMESLASALHEVSAEAREAKENLLN 481

Query: 181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
            Q E E+Y+AQIEDL++VLKATNEKYESML++A+HEI +L   I+ +K   + SKAEWE 
Sbjct: 482 IQAERESYDAQIEDLKLVLKATNEKYESMLNEARHEIDVLVCSIENSKSAFENSKAEWEH 541

Query: 241 KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
           +EL LV C+KK+EEE  SLEKEI RL+ LLKETEE+A A +EEE QL+++LKEVEAE I 
Sbjct: 542 RELQLVSCIKKNEEEKVSLEKEIKRLLYLLKETEEEANANREEEDQLKENLKEVEAEAIQ 601

Query: 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK 360
           +QE L +  AE+MKLKE+ LDKE ELQS+ QEN+ELR+REA+S+KK+EELS LLEEA  +
Sbjct: 602 LQEALKETTAENMKLKENLLDKENELQSMFQENDELRSREAESIKKLEELSKLLEEATTR 661

Query: 361 KQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPV-QECKEQNLENSKEET 419
             T ENG+LTDSEKDYDLLPKVVEFSEENG   GE+  K++L V QE  +QN  N +E++
Sbjct: 662 NHTEENGDLTDSEKDYDLLPKVVEFSEENGLV-GEDISKVELSVNQEELKQN--NMQEDS 718

Query: 420 NGMNDETVELAAAKIDNVNG-----KLKEDESKEKEDDSVEVEFKMWESCKIE-KELSPD 473
              ND+  ++ + K + V+G     + KE E  +++DDSVEVE+KMWESCKIE KE SP+
Sbjct: 719 ILSNDKAEKIESPKHEEVSGKRKEDETKEKEESKEKDDSVEVEYKMWESCKIEKKEFSPE 778

Query: 474 REPEPESFEEETNSKVE-GSENFGRINGLSSSENIDDGGSSPSKQQQLQQKKKKPFIRKF 532
           RE EPESFEEE NSK+E G E+F +ING + +ENID+ GS PSKQ+Q  +KKKKP + KF
Sbjct: 779 REAEPESFEEEVNSKIEKGGESFDKINGNAVTENIDESGSPPSKQEQ-LKKKKKPLLGKF 837

Query: 533 GSLLKKKQATTPK 545
           GSLLKKK A+  K
Sbjct: 838 GSLLKKKGASNQK 850

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	545
TAIR|locus:2075402	806	AT3G02930 "AT3G02930" [Arabido	0.783	0.529	0.488	2.4e-99
TAIR|locus:2010826	1345	AT1G65010 [Arabidopsis thalian	0.787	0.318	0.417	2e-74
TAIR|locus:504955294	1221	AT4G27595 "AT4G27595" [Arabido	0.776	0.346	0.407	1.3e-70
TAIR|locus:2140114	615	AT4G40020 "AT4G40020" [Arabido	0.730	0.647	0.268	1.2e-25
DICTYBASE|DDB_G0271058	1528	vilC "villin-like protein C" [	0.759	0.270	0.242	5.1e-10
SGD|S000002216	1790	USO1 "Protein involved in the	0.776	0.236	0.208	3.6e-09
UNIPROTKB|Q8VXD2	601	p70 "P70 protein" [Nicotiana t	0.667	0.605	0.219	4.9e-09
TAIR|locus:2045412	1333	AT2G32240 "AT2G32240" [Arabido	0.774	0.316	0.215	6.9e-09
UNIPROTKB|E3W9A2	1427	CLIP1 "Uncharacterized protein	0.748	0.285	0.195	7.5e-09
TAIR|locus:2152985	1586	CIP1 "COP1-interactive protein	0.581	0.199	0.223	2.3e-08

TAIR|locus:2075402 AT3G02930 "AT3G02930" [Arabidopsis thaliana (taxid:3702)]

 Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
 Identities = 211/432 (48%), Positives = 285/432 (65%)

Query:     1 MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
             MAESYA    +EW+ + +ELE + EEA+KL++ AS SL +V +QLE +N +LHD ESEI 
Sbjct:   299 MAESYAHGFADEWQNKAKELEKRLEEANKLEKCASVSLVSVTKQLEVSNSRLHDMESEIT 358

Query:    61 ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
              LKEK+ LLEMT+  QK DL++SE+K  +A+ E+S+  K  E LK ELETV EEK QAL 
Sbjct:   359 DLKEKIELLEMTVASQKVDLEKSEQKLGIAEEESSKSEKEAEKLKNELETVNEEKTQALK 418

Query:   121 NEKLAASSVQNLLEEKHKLINXXXXXXXXXXXXXXXXXXXXXXXHEVSVEAREAKEKLLS 180
              E+ A SSVQ LLEEK K+++                       HEVS E+RE KEKLLS
Sbjct:   419 KEQDATSSVQRLLEEKKKILSELESSKEEEEKSKKAMESLASALHEVSSESRELKEKLLS 478

Query:   181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
                ++  YE QIEDL++V+KATN KYE+MLD+A+HEI +L N +++ K + + +  +WE 
Sbjct:   479 RGDQN--YETQIEDLKLVIKATNNKYENMLDEARHEIDVLVNAVEQTKKQFESAMVDWEM 536

Query:   241 KELHLVDCVXXXXXXXXXXXXXINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
             +E  LV+ V             +NRL NL+K T+E+A A+ E+E+Q+RD LKEVE EVIY
Sbjct:   537 REAGLVNHVKEFDEEVSSMGKEMNRLGNLVKRTKEEADASWEKESQMRDCLKEVEDEVIY 596

Query:   301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADXXXXXXXXXXXXXXAMAK 360
             +QETL +A+AE++KLK   LDKETE QS++ EN+ELR ++ D              A+AK
Sbjct:   597 LQETLREAKAETLKLKGKMLDKETEFQSIVHENDELRVKQDDSLKKIKELSELLEEALAK 656

Query:   361 KQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKP-KMD-LPVQECK-EQNLENSKE 417
             K   ENGEL++SEKDYDLLPKVVEFSEENG+   EEK  K++ L     K E++ E  ++
Sbjct:   657 KHIEENGELSESEKDYDLLPKVVEFSEENGYRSAEEKSSKVETLDGMNMKLEEDTEKKEK 716

Query:   418 ETNGMNDETVEL 429
             +     DETVE+
Sbjct:   717 KERSPEDETVEV 728

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2010826 AT1G65010 [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.0e-74, P = 2.0e-74
 Identities = 186/445 (41%), Positives = 257/445 (57%)

Query:     1 MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
             MAES   + VEEWK +V ELE + EE+++ K SASES+++VM+QL   N  LH+ +S+ A
Sbjct:   300 MAESCTNSSVEEWKNKVHELEKEVEESNRSKSSASESMESVMKQLAELNHVLHETKSDNA 359

Query:    61 ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
             A KEK+ LLE TI  Q+ DL+E  R+  +AK E S++   VES+K ELE  +EEK +AL+
Sbjct:   360 AQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLVESIKSELEISQEEKTRALD 419

Query:   121 NEKLAASSVQNLLEEKHKLINXXXXXXXXXXXXXXXXXXXXXXXHEVSVEAREAKEKLLS 180
             NEK A S++QNLL+++ +L                          E S E+ EAK  LL 
Sbjct:   420 NEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLV 479

Query:   181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
              Q E +  E+Q++ L++  K TNEKYE ML+DA++EI  L + +   ++E + SKA WEQ
Sbjct:   480 CQEELKNCESQVDSLKLASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFENSKAGWEQ 539

Query:   241 KELHLVDCVXXXXXXXXXXXXXINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
             KELHL+ CV             ++RLVNLLKE+EEDACA KEEEA L+++LK  E EV Y
Sbjct:   540 KELHLMGCVKKSEEENSSSQEEVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKY 599

Query:   301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADXXXXXXXXXXXXXXAMAK 360
             +QETLG+A+AESMKLKES LDKE +L++V  E   LR  E                 + K
Sbjct:   600 LQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEELSKVKESLVDK 659

Query:   361 KQ-----TAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENS 415
             +      T E  EL   E  +  + ++ E S  N  +  +E  K+   VQE      E+ 
Sbjct:   660 ETKLQSITQEAEELKGREAAH--MKQIEELSTANA-SLVDEATKLQSIVQES-----EDL 711

Query:   416 KEETNGMNDETVELAAAK---IDNV 437
             KE+  G   +  EL+ A     DNV
Sbjct:   712 KEKEAGYLKKIEELSVANESLADNV 736

GO:0005634 "nucleus" evidence=ISM

GO:0009908 "flower development" evidence=IMP

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:504955294 AT4G27595 "AT4G27595" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 178/437 (40%), Positives = 252/437 (57%)

Query:     1 MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60
             M ESYA NL  EWK    E++ Q EE+ +LK SASESLD  M+QLE NN  LH+AE   A
Sbjct:   312 MVESYANNLAAEWK---NEVDKQVEESKELKTSASESLDLAMKQLEENNHALHEAELGNA 368

Query:    61 ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120
              LKEKV  L  TIGRQ+ DL+ES+ +  ++K ETS++ K VES+K +LET + EK +AL 
Sbjct:   369 TLKEKVESLVTTIGRQENDLEESQHQVCISKEETSKLEKLVESIKSDLETTQGEKVRALL 428

Query:   121 NEKLAASSVQNLLEEKHKLINXXXXXXXXXXXXXXXXXXXXXXXHEVSVEAREAKEKLLS 180
             NEK A S +QNLL EK +L                          EVSVEA+EAKEKLL+
Sbjct:   429 NEKTATSQIQNLLSEKTELATELENCKKEEEKIKKAMESLTLDLQEVSVEAKEAKEKLLT 488

Query:   181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
              Q E E    QIE L++  K TNEK+  ML+DA++EI  L + ++  ++E   SK EWEQ
Sbjct:   489 CQAELELCGVQIESLKLAEKDTNEKHGKMLEDARNEIDGLKSSLENTENEFFNSKTEWEQ 548

Query:   241 KELHLVDCVXXXXXXXXXXXXXINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIY 300
             +ELHL+ CV             ++++ NLL   E +ACA KEE+A+++ + KE+E E+  
Sbjct:   549 RELHLMLCVKKLEDGNFSVQEELSKVKNLLHLKEVEACAAKEEDAKMQTNRKELEEEIKD 608

Query:   301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADXXXXXXXXXXXXXXAMAK 360
             +QE +  A+A+SMKLKES ++KE EL++   EN +LR  E                ++  
Sbjct:   609 LQEIVEVAKADSMKLKESLVEKEDELKNTAAENRKLREMEVSSIDKIDQLSKVKE-SLVD 667

Query:   361 KQTAENGELTDSE----KDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKE---QNLE 413
             K+T     + ++E    K+ D L K+ E S     +  E++ K+   VQE +E   + L 
Sbjct:   668 KETKLQNIIQEAEELRVKEIDYLKKIEELSAAK-ESLVEKETKLLSTVQEAEELRRRELA 726

Query:   414 NSK--EETNGMNDETVE 428
               K  EE + +N+  V+
Sbjct:   727 CLKKIEELSAVNERLVD 743

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140114 AT4G40020 "AT4G40020" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
 Identities = 115/428 (26%), Positives = 190/428 (44%)

Query:    11 EEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDA-ESEIAALKEKVGLL 69
             E +K++   LE +  E   LK+   +  D  ++ LE    KL D+ + +   L+E   L+
Sbjct:    28 ELYKMKAS-LENRENEVVSLKQELLKK-DIFIKNLEAAEKKLLDSFKDQSRELEETKALV 85

Query:    70 E---MTIGRQKADLDESERKHSMAKNETSEMAKT---VESLKFELETVKEEKAQALNNEK 123
             E   + I   K  +D S      ++ +  + +     +ESLK E+E+ KE  AQA    +
Sbjct:    86 EESKVEIASLKEKIDTSYNSQDSSEEDEDDSSVQDFDIESLKTEMESTKESLAQAHEAAQ 145

Query:   124 LAASSVQNLLEEKHKLINXXXXXXXXXXXXXXXXXXXXXXXHEVSVEAREAKEKLLSSQT 183
              ++  V  LLEE   + N                        EV+ +  + KEKL+  +T
Sbjct:   146 ASSLKVSELLEEMKSVKNELKSATDAEMTNEKAMDDLALALKEVATDCSQTKEKLVIVET 205

Query:   184 EHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKEL 243
             E E   A+IE      +   +KYE +  DA+    LL N  +  + E++ S   W  KE 
Sbjct:   206 ELEA--ARIES-----QQWKDKYEEVRKDAE----LLKNTSERLRIEAEESLLAWNGKES 254

Query:   244 HLVDCVXXXXXXXXXXXXXINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQE 303
               V C+              NRL+  L   E  +   KEE  ++RD LK+   E    +E
Sbjct:   255 VFVTCIKRGEDEKNSLLDENNRLLEALVAAENLSKKAKEENHKVRDILKQAINEANVAKE 314

Query:   304 TLGQARAESMKLKESFLDKETELQSVIQENEELRAREA---DXXXXXXXXXXXXXXAMAK 360
               G ARAE+  LK++ LDKE ELQ  ++E E ++  EA   D              AM +
Sbjct:   315 AAGIARAENSNLKDALLDKEEELQFALKEIERVKVNEAVANDNIKKLKKMLSEIEVAMEE 374

Query:   361 -KQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENS-KEE 418
              KQ + N + +  ++  +++ K +E  E+    +  +K K     +E K++  E+S K+E
Sbjct:   375 EKQRSLNRQESMPKEVVEVVEKKIEEKEKKEEKKENKKEK-----KESKKEKKEHSEKKE 429

Query:   419 TNGMNDET 426
                  ++T
Sbjct:   430 DKEKKEQT 437

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0271058 vilC "villin-like protein C" [Dictyostelium discoideum (taxid:44689)]

 Score = 180 (68.4 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 108/446 (24%), Positives = 179/446 (40%)

Query:    11 EEWKIRVEEL--EMQAEEAHKLKRSASESLDAVMRQ-LEGN-NDKLHDAESEIAALKEKV 66
             EE + ++++L  +  +E+  KLK+  +E L+   ++ +E    DK    E E+A   EK 
Sbjct:   176 EEEQRKLQDLLDKKDSEKIEKLKQEENEKLEKEEKERIEKELTDKKEKEEKELADKLEKE 235

Query:    67 GL---LEMTIGRQKADLDESERKHSMAKNETSEMAKTVESL----KFELETVKEEKAQAL 119
                  L   + ++K + +E E    + K    +  K  E      K E E+ ++E A+ L
Sbjct:   236 RQEKELADKLEKEKKEKEEKELADKLEKERLDKEKKDKEEKELADKLEKESQEKELAEKL 295

Query:   120 NNEKLAASSVQNLLEEKHKLINXXXXXXXXXXXXXXXXXXXXXXXHEVSVEAREAKEKLL 179
               EK  A  ++   E+K K                           +  +E +E +EK L
Sbjct:   296 EKEKELADKLEK--EQKEKEEKERQEKELADKLAKEQKEKEEKELAD-KLE-KERQEKEL 351

Query:   180 SSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKD----ESKISK 235
             + + E E  E ++ D     K   E  E  L+  K E  L   + KE K+    E K  K
Sbjct:   352 ADKLEKEKQEKELADKLEKEKQEKESLEK-LEKEKQEKELADKLAKEQKEKEEKEEKEEK 410

Query:   236 AEWEQKELHLVDC-VXXXXXXXXXXXXXINRLVNLLKETEEDACATKEE----EAQLRDS 290
              + E++E    D  +               RL    KE EE   A K E    E +L D 
Sbjct:   411 EKQEKEEKERKDKELAAAAAAAETEKLEKERLEKEKKELEEKELAEKLEKEKLEKELTDK 470

Query:   291 L-KEV-EAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADXXXXXX 348
             L KE  E E+    E   Q +  + KL++   +KE + +   +  ++L   + D      
Sbjct:   471 LEKEKKEKELADKLEKEKQDKELADKLEKEQKEKEEKQRKEKELADKLEKEKQDKELADK 530

Query:   349 XXXXXXXXAMAKKQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECK 408
                        +K+ A+  +L   +KD +L  KV +  EE      E K K++   +E K
Sbjct:   531 LAKEKEEKERKEKELAD--KLEKEKKDKELADKVTKEKEEKDKKEKEFKLKLE---KEQK 585

Query:   409 EQNLENSKEETNGMNDETVELAAAKI 434
             E+ L+  +E      +E   L   KI
Sbjct:   586 EKELKLKQEREFAEKEERDRLEREKI 611

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 173 (66.0 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 93/447 (20%), Positives = 185/447 (41%)

Query:     6 ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEK 65
             +  + EE   +  EL++Q E+   L ++  +S   + R  + ++++  +AE ++  LK +
Sbjct:  1298 SEKIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNE 1357

Query:    66 VGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEK-- 123
             + +      +++  L+E     S    E SE   T+E     L+   E KA+ ++N +  
Sbjct:  1358 IQIKNQAFEKERKLLNEGS---STITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSE 1414

Query:   124 LAASSVQN--LLEEKHKLINXXXXXXXXXXXXXXXXXXXXXXXHEVSVEAREA-KEKLLS 180
             L   S+ N  LLEEK   I                           +    E+ KE+L +
Sbjct:  1415 LEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRA 1474

Query:   181 SQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQ 240
             +Q      +A++E+    L+  + K ++ L+ +K  +  L + I+  + E K S     +
Sbjct:  1475 AQES----KAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNETELKSSMETIRK 1530

Query:   241 KELHLVDCVXXXXXXXXXXXXXINRLVNLLKETEEDACATKEE---EAQLRDSLKEVEAE 297
              +  L                  + L++ + E+E+D    K +   EA+    L+ V+ E
Sbjct:  1531 SDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQE 1590

Query:   298 VIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADXXXXXXXXXXXXXXA 357
             +   QE +     E+  LK    D E EL+    +  E+++ + +               
Sbjct:  1591 LNNAQEKIRINAEENTVLKSKLEDIERELKD---KQAEIKSNQEEKELLTSRLKELEQEL 1647

Query:   358 MAKKQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKE 417
              + +Q A+  E    E+  ++    VE S+ +  A   E    DL  +E   +  E++ +
Sbjct:  1648 DSTQQKAQKSE---EERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTVK 1704

Query:   418 ETNGMNDETVELAAAKIDNV---NGKL 441
             +T     + +E  A ++DN+   N KL
Sbjct:  1705 KTTDSQRQEIEKLAKELDNLKAENSKL 1731

GO:0015031 "protein transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA;IDA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IDA

GO:0048211 "Golgi vesicle docking" evidence=IDA

GO:0035493 "SNARE complex assembly" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|Q8VXD2 p70 "P70 protein" [Nicotiana tabacum (taxid:4097)]

 Score = 166 (63.5 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 86/392 (21%), Positives = 162/392 (41%)

Query:    32 RSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAK 91
             R+    L+A+ +Q E ++  L  A +EI  LK ++  +  +   Q    + +  +    +
Sbjct:   153 RAWESELEAIQKQHELDSAALASALNEIQKLKIQLDRVADSEATQAHHAESAHAEIQSLR 212

Query:    92 NETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQ--NLLEEKHKLINXXXXXXXX 149
              E  E    VE L+ +L   KE +A +L     A   ++   + E+  +           
Sbjct:   213 VELMETLTLVEKLRNQLNDSKESEACSLEEVSKAQMQLEMSKMTEDTLRSEGLKAMDACR 272

Query:   150 XXXXXXXXXXXXXXXHEVSVEAREAKEKLLSSQ-----TEHETYEAQIEDLRIVLKATNE 204
                             E  V   ++ E  ++++      E +  +A++ +LR  L+A+  
Sbjct:   273 TLSLELEKSKDRVASLEELVSKLQSSESSVAAEGNGVTVEADELKAEVSELRAALEASER 332

Query:   205 KYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVXXXXXXXXXXXXXIN 264
             KY+     +  +I     +++  K ES   +AEWE K L+                  +N
Sbjct:   333 KYQEEYIQSTLQIRSAYELVERTKSESTQREAEWEAK-LN-----ETKSEVQELKEKLMN 386

Query:   265 RLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKET 324
             +   L   ++E+   +   E Q++ + KE E     +   L Q+ + S  L+ + LDKE 
Sbjct:   387 KEAELQNISDENKGLSLHVE-QMQSADKEFE-----LSAQLKQSESISGDLRGNLLDKEN 440

Query:   325 ELQSVIQENEELRA----READXXXXXXXXXXXXXXAMAKKQTA--ENGELTDSEKDYDL 378
             ELQS+++ENE L++    RE++              A   +  A  + G+LT+ E D   
Sbjct:   441 ELQSLMEENELLKSEIGKRESESTKMSDEALALVEAAKTAESEALIKLGDLTE-EADRSS 499

Query:   379 LPKVVEFSEENGHARGEEKPKMDLPVQECKEQ 410
               KV   +EE   A+     +M+  ++  K Q
Sbjct:   500 R-KVARVTEELDAAQTANS-EMETELRRLKVQ 529

GO:0051219 "phosphoprotein binding" evidence=IPI

TAIR|locus:2045412 AT2G32240 "AT2G32240" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 6.9e-09, P = 6.9e-09
 Identities = 98/454 (21%), Positives = 191/454 (42%)

Query:     1 MAESYARNLVEEWKIR-VEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEI 59
             ++++ + N   E K++ +EEL  +A  A       +  L+ V+R    ++    +A+S+I
Sbjct:   440 LSQALSNNSELEQKLKSLEELHSEAGSAAAAATQKNLELEDVVRS---SSQAAEEAKSQI 496

Query:    60 AALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQA- 118
               L+ K    E      +  L+  + K S A+ E  E+++    L+  +E  +EEK QA 
Sbjct:   497 KELETKFTAAEQKNAELEQQLNLLQLKSSDAERELKELSEKSSELQTAIEVAEEEKKQAT 556

Query:   119 --LNNEKLAASSVQNLLEEKHKLINXXXXXXXXXXXXXXXXXXXXXXXHEVSVEAREAKE 176
               +   K  AS ++  L +     +                       H+ S+E     +
Sbjct:   557 TQMQEYKQKASELELSLTQSSARNSELEEDLRIALQKGAEHEDRANTTHQRSIELEGLCQ 616

Query:   177 KLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKA 236
                SSQ++HE  E +++DL ++L+   EKY   + + + ++  L    K  + E+  SK 
Sbjct:   617 ---SSQSKHEDAEGRLKDLELLLQT--EKYR--IQELEEQVSSLEK--KHGETEAD-SKG 666

Query:   237 EWEQKELHLVDCVXXXXXXXXXXXXXINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA 296
                Q    L   +             +N      KE  E+  A   E+ +L  ++ E   
Sbjct:   667 YLGQVA-ELQSTLEAFQVKSSSLEAALNIATENEKELTENLNAVTSEKKKLEATVDEYSV 725

Query:   297 EVIYMQETLGQARAESMKLKESFLDK-ETELQSV-IQENEEL-RAREADXXXXXXXXXXX 353
             ++   +  L   R E + + +  L+  E +L++  +QE+E + + + A+           
Sbjct:   726 KISESENLLESIRNE-LNVTQGKLESIENDLKAAGLQESEVMEKLKSAEESLEQKGREID 784

Query:   354 XXXAMAKKQTAENGELT-DSEKDYDLLPKVVEFSEENGHARGEEKPKMDLP--VQECKEQ 410
                    +  A +  L+ DSE  + L   + EF+  +  A    +   DL   ++  +EQ
Sbjct:   785 EATTKRMELEALHQSLSIDSE--HRLQKAMEEFTSRDSEASSLTEKLRDLEGKIKSYEEQ 842

Query:   411 NLENSKEETNGMN--DETV-ELAAAKIDNVNGKL 441
               E S + ++     ++T+  LAAA  ++VN KL
Sbjct:   843 LAEASGKSSSLKEKLEQTLGRLAAA--ESVNEKL 874

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

UNIPROTKB|E3W9A2 CLIP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 7.5e-09, P = 7.5e-09
 Identities = 86/439 (19%), Positives = 173/439 (39%)

Query:    12 EWKIRVEELEMQAEEAHK------LKRSASES-LDAVMRQLEGNNDKLHDAE---SEIAA 61
             E K+ +E L  Q E A K      +++ A  S   ++ ++L+G    L++ +   SE++ 
Sbjct:   774 EGKLEIENLRQQLEAAEKQIKNLEIEKDAESSKASSITKELQGKELMLNNLQENLSEVSQ 833

Query:    62 LKEKVGLLEMTIGRQKADLDES----ERKHSMAKNETSEMAKTVESLKFELETVKEEKAQ 117
             +KE +     T+  + AD  E     +R      N+  +  +   +L  ELE ++E    
Sbjct:   834 VKEALEKELQTLKEKFADASEEAVSFQRSMQETVNKLHQKEEQFNALSSELEKLRENLTD 893

Query:   118 ALNNEKLAASSVQNLLEEKHKLINXXXXXXXXXXXXXXXXXXXXXXXHEVSVEAREAKEK 177
                  +      + L++ K KL N                        E+ ++ R  +E 
Sbjct:   894 MEAKFRERDEREEQLIKAKEKLENDIAAIMKMSGDNSSQLTKMND---ELRLKERNVEEL 950

Query:   178 LLSSQTEHETYEAQIEDL-RIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKA 236
              L     +E      + +  + LKA   + E+     KHE      ++++  D  K  + 
Sbjct:   951 QLKLTKANENASLLQKSIGEVTLKAEQSQKEAA---KKHEEEK-KELLRKLSDLEKKMEM 1006

Query:   237 EWEQKELHLVDCVXXXXXXXXXXXXXINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA 296
              W + +                    +  L  LL++TEE   A +EE  +L   L+E+  
Sbjct:  1007 SWNECQDLKARYEEASSESRAKHEEVLQNLHKLLRDTEERLKAAQEENRELLQKLEELGK 1066

Query:   297 EVIYMQETLGQARAESMKLKESFLDKETE----LQSVIQENEELRAREADXXXXXXXXXX 352
             +    +    Q   ++M++ E    ++TE    L+   Q NE+L+  E D          
Sbjct:  1067 QAD--RARAAQTAEDAMQIMEQMTKEKTETLASLEDSKQTNEKLQ-NELDTLKENNLKNV 1123

Query:   353 XXXXAMAKKQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNL 412
                    +  T EN ++ + +K+ + L +      +   A  EE  K++  +   +++  
Sbjct:  1124 EELNKSKELLTVENQKIEEFKKEIETLKQAAAQKSQQLSALQEENVKLNEELGRSRDEVT 1183

Query:   413 ENSK--EETNGMNDETVEL 429
              + K  EE + +N++ +E+
Sbjct:  1184 SHQKLEEERSVLNNQLLEM 1202

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0044354 "macropinosome" evidence=IEA

GO:0035371 "microtubule plus end" evidence=IEA

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 77/344 (22%), Positives = 142/344 (41%)

Query:    12 EWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEM 71
             E   RV ELE Q E + +  R +  ++D  ++  E  N  +     EI    +K+   + 
Sbjct:   608 ESSTRVSELEAQLESSEQ--RISDLTVD--LKDAEEENKAISSKNLEIM---DKLEQAQN 660

Query:    72 TIGRQKADLDESERKHSMAKNETSEMAKT----VESLKFELETVKEEKAQALNNEKLAAS 127
             TI     +L E + +H   ++E S + K+    V  +K  L+  +EEK + L+   L   
Sbjct:   661 TIKELMDELGELKDRHKEKESELSSLVKSADQQVADMKQSLDNAEEEK-KMLSQRIL--- 716

Query:   128 SVQNLLEEKHKLINXXXXXXXXXXXXXXXXXXXXXXXHEV-SVEAREAKEKLLSSQTEHE 186
              + N ++E  K I                         ++     RE+  +L   +T+ +
Sbjct:   717 DISNEIQEAQKTIQEHMSESEQLKESHGVKERELTGLRDIHETHQRESSTRLSELETQLK 776

Query:   187 TYEAQIEDLRIVLKATNEKYES---MLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKEL 243
               E ++ DL   L A  E+ +S   M+ +   E+    + ++E   E   SK    QKE 
Sbjct:   777 LLEQRVVDLSASLNAAEEEKKSLSSMILEITDELKQAQSKVQELVTELAESKDTLTQKEN 836

Query:   244 HLVDCVXXXXXXXXXXXXXINRLV-------NLLKETEEDACATKEEEAQLRDSLKEVEA 296
              L   V             +  L          +KE  ++  +++EE+  L   + E+  
Sbjct:   837 ELSSFVEVHEAHKRDSSSQVKELEARVESAEEQVKELNQNLNSSEEEKKILSQQISEMSI 896

Query:   297 EVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRARE 340
             ++   + T+ +  +ES +LK S  +K+ EL S +++  E   RE
Sbjct:   897 KIKRAESTIQELSSESERLKGSHAEKDNELFS-LRDIHETHQRE 939

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=IDA

GO:0042306 "regulation of protein import into nucleus" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFE4	Y5673_ARATH	No assigned EC number	0.5487	0.9816	0.6271	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	545
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
PLN02939	977	PLN02939, PLN02939, transferase, transferring glyc	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.004
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.4 bits (165), Expect = 1e-11
 Identities = 83/356 (23%), Positives = 168/356 (47%), Gaps = 2/356 (0%)

Query: 95   SEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSK 154
            S   ++  + K EL+ ++EE A+     +     +++L  E   L + LE  R + E+ +
Sbjct: 656  SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 155  KAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAK 214
            + +E L   L  +  E  + + +L   + E E  E ++E+L+  L+   E+ ES L++A 
Sbjct: 716  RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELES-LEEAL 774

Query: 215  HEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETE 274
             ++      ++E +   +    E E++       +   E E  SLE+   RL   ++E E
Sbjct: 775  AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834

Query: 275  EDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENE 334
            E+    +E+  +L + L+E+E E+  ++E L +  AE  +L++   + E E + + +E  
Sbjct: 835  EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR 894

Query: 335  ELRAREADSVKKVEELSSLLEEAMAKKQTAENGELTDSEKDYDLLPKVVEFSEENGHARG 394
            EL +  A+  +++E+L   LEE  AK +  E       E+  +     +E   E    R 
Sbjct: 895  ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERL 954

Query: 395  EEKPKMDLPVQECKEQNLENSKEETNGMNDETVELAAAKIDNVNGKLKEDESKEKE 450
            EE+ +   PV     +  E  +E    +  +  +L  AK + +   ++E + +++E
Sbjct: 955  EEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAK-EKLLEVIEELDKEKRE 1009

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.0 bits (156), Expect = 1e-10
 Identities = 81/345 (23%), Positives = 155/345 (44%), Gaps = 5/345 (1%)

Query: 10   VEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLL 69
            + E + ++E+LE + +      RS  + L+ + RQLE    +L + + E+AAL+E++  L
Sbjct: 676  LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQL 735

Query: 70   EMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSV 129
            +  +   + +L+E E +    +    E+ + +ESL+  L  +KEE  +     +     +
Sbjct: 736  QSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEEL 795

Query: 130  QNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYE 189
            + L EE  +    L+    E E  ++  E L   + E+  E  E +EKL   + E E  E
Sbjct: 796  EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE 855

Query: 190  AQIEDLRIVLKATNEKYESM---LDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLV 246
             ++E+L+  L+    + E +   L + + E   L   ++E + E    K E E+    L 
Sbjct: 856  KELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915

Query: 247  DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLR-DSLKEVEAEVIYMQETL 305
            +   K E     L +    L    ++T E     + E  +   ++L  V    I   E +
Sbjct: 916  ELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEV 975

Query: 306  GQARAESMKLKESFLDKETELQSVIQE-NEELRAREADSVKKVEE 349
             +   E    +E   + + +L  VI+E ++E R R  ++  K+ E
Sbjct: 976  EERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINE 1020

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.1 bits (141), Expect = 8e-09
 Identities = 60/311 (19%), Positives = 124/311 (39%), Gaps = 15/311 (4%)

Query: 69  LEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASS 128
           LE  I   +  + E E+  +  + E  E+ + +E L+ ELE +  + +    +     + 
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741

Query: 129 VQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETY 188
           V+ L E   +L  EL     E E+ ++ +E     L E   E  E + ++   + E +  
Sbjct: 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801

Query: 189 EAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDC 248
              +++LR  L   NE+      + +  +  L   I   +   +  + + E+    +   
Sbjct: 802 REALDELRAELTLLNEEA----ANLRERLESLERRIAATERRLEDLEEQIEELSEDI--- 854

Query: 249 VKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQA 308
                    SL  EI  L  L++E E +  A   E A L ++L  + +E+  + E L + 
Sbjct: 855 --------ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906

Query: 309 RAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQTAENGE 368
            ++  +L+    +   +L  +    E L  R  +  +++ E  SL  E     +     +
Sbjct: 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDD 966

Query: 369 LTDSEKDYDLL 379
             ++ +    L
Sbjct: 967 EEEARRRLKRL 977

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 78/332 (23%), Positives = 134/332 (40%), Gaps = 14/332 (4%)

Query: 26  EAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVG-----------LLEMTIG 74
           +  + K  A   L+     LE   D L + E ++  L+ +             L E+ + 
Sbjct: 169 KYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELA 228

Query: 75  RQKADLDESERKHSMAKNETSEMAKTVESLKFELETVK---EEKAQALNNEKLAASSVQN 131
              A L E  ++    + E S + + +E L+ ELE  +   EE    L   +     +Q 
Sbjct: 229 LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQE 288

Query: 132 LLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQ 191
            L E  + I ELE       +  + +E+    L E   E +E  E L     E ET   +
Sbjct: 289 ELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348

Query: 192 IEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKK 251
           +E L   L+   E+ E  L     E+  L   ++E   E +   AE   +   L   ++ 
Sbjct: 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES 408

Query: 252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAE 311
            EE    L + +  L   LKE E +    + E  +L + L+E+E ++  +++ L +   E
Sbjct: 409 LEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERE 468

Query: 312 SMKLKESFLDKETELQSVIQENEELRAREADS 343
             +L+E     E EL S+    + L A +  S
Sbjct: 469 LAELQEELQRLEKELSSLEARLDRLEAEQRAS 500

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 82/362 (22%), Positives = 150/362 (41%), Gaps = 18/362 (4%)

Query: 6    ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEK 65
                +EE + ++ ELE    E  K      E L+ + ++LE  + ++     ++A L+ +
Sbjct: 682  LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741

Query: 66   VGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLA 125
            V  LE  I +   +L E E +    +    E  + +   + E+E ++ +  Q     K  
Sbjct: 742  VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801

Query: 126  ASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEH 185
              ++  L  E   L  E  N RE  E  ++ + +    L ++  +  E  E + S   E 
Sbjct: 802  REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861

Query: 186  ETYEAQIEDLRIVLKATNEKYESM---LDDAKHEIGLLTNIIKEAKDESKISKAEWEQKE 242
            E  E  IE+L   L+A   +  S+   L   + E+  L+  ++E + +    + E E+  
Sbjct: 862  EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921

Query: 243  LHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACA----TKEEEAQLRDSLKEVEAEV 298
              L     + E     ++    RL      T E+A A     +++E + R  LK +E ++
Sbjct: 922  EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981

Query: 299  IYMQETLGQARAESMKLKE--SFLDKETE--------LQSVIQE-NEELRAREADSVKKV 347
              +      A  E  +LKE   FL  + E        L+  I+E + E R R  D+  +V
Sbjct: 982  KELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQV 1041

Query: 348  EE 349
             E
Sbjct: 1042 NE 1043

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 74/324 (22%), Positives = 146/324 (45%), Gaps = 8/324 (2%)

Query: 9   LVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGL 68
           ++ E + +++ LE QAE+A + K      L  +   L     +L +   E+  L+E++  
Sbjct: 194 ILNELERQLKSLERQAEKAERYKE-LKAELRELELALLVL--RLEELREELEELQEELKE 250

Query: 69  LEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASS 128
            E  +    A+L E E K    + E SE+ + +E L+ EL  +  E ++    +++    
Sbjct: 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310

Query: 129 VQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETY 188
           + NL  +  +L  +LE    + ++  + +  L   L E+  E    + +L   + E E  
Sbjct: 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370

Query: 189 EAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDC 248
           E+++E+L   L    E   S +   + +I  L N I+  +   +  +   E+ +  + + 
Sbjct: 371 ESRLEELEEQL----ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426

Query: 249 VKKSEE-ENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQ 307
           +KK EE E   L+ E+  L   L+E +E+    +E   +LR+ L+E E  +   +  L Q
Sbjct: 427 LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486

Query: 308 ARAESMKLKESFLDKETELQSVIQ 331
            +A    L+    + E   + V  
Sbjct: 487 LQARLDSLERLQENLEGFSEGVKA 510

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 6e-08
 Identities = 74/308 (24%), Positives = 131/308 (42%), Gaps = 29/308 (9%)

Query: 8   NLVEEWKIRVEELEMQAEEAHKLKR-----------SASESLDAVMRQLEGNNDKLHDAE 56
           +L+EE + ++E+LE QAE+A + +                 L  + ++LE   ++L   E
Sbjct: 193 DLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLE 252

Query: 57  SEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA 116
            E+  L+E++   E  I   K++L+E   +    + E  E+ + +E L+ E+  ++E   
Sbjct: 253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE 312

Query: 117 QALNNEKLAASSVQNLLEEKHKLINELENSR-------EEEEKSKKAMESLASALHEVSV 169
           +  N  +     ++ L E+   L  ELE          +   + ++A E L   L  +  
Sbjct: 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE 372

Query: 170 EAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKD 229
           E  E  E L     E E   A+I +    LK   E  E  L+     +  L   +KE + 
Sbjct: 373 ELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA 432

Query: 230 ESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRD 289
           E +  + E E+             EE   LE+++  L + LKE E +    +EE  +L  
Sbjct: 433 ELEELQTELEEL-----------NEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481

Query: 290 SLKEVEAE 297
            L  +EA 
Sbjct: 482 ELSSLEAR 489

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 51/241 (21%), Positives = 109/241 (45%), Gaps = 9/241 (3%)

Query: 128 SVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHET 187
            +Q L E    L  EL + + E  + +  ++ L+  L + S +  E ++++   + E E 
Sbjct: 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734

Query: 188 YEAQIEDLRIVLKATNEK---YESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELH 244
            + ++E+L   L +  ++    +S L + +  I  L   + + ++       + E +  H
Sbjct: 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA----LNDLEARLSH 790

Query: 245 LVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQET 304
               + + + E S LE+E++R+   L+E E+       E+  L   ++E++ + I ++E 
Sbjct: 791 --SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848

Query: 305 LGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQTA 364
           +     E   L     + E EL+ +     +L +R  D  K+ +EL + L E   K +  
Sbjct: 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908

Query: 365 E 365
           E
Sbjct: 909 E 909

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 8/230 (3%)

Query: 14  KIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTI 73
              +  LE Q +   +   +    L+ +  QLE    KL +   E+A L+EK+  L+  +
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 74  GRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLL 133
              +A+L+E        + E  E+   +E L+ +LET++ + AQ         + ++ L 
Sbjct: 354 ESLEAELEE-------LEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406

Query: 134 EEKHKLINELENSREE-EEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQI 192
               +L +  E  ++E EE  KK  E+    L     E  E  E+L       E    ++
Sbjct: 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466

Query: 193 EDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKE 242
            +     +   +  E  L   +  +  L  + +  +  S+  KA  + + 
Sbjct: 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQS 516

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 50.9 bits (121), Expect = 2e-06
 Identities = 114/516 (22%), Positives = 214/516 (41%), Gaps = 31/516 (6%)

Query: 6    ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEK 65
            A+   EE K + +  + +AEEA K   +A    +A   + E   +K   AE +    K+K
Sbjct: 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379

Query: 66   VGLLEMTIGRQ------KADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQAL 119
                +     +      K   +E ++K    K   +   K  E+ K   E  K ++A+  
Sbjct: 1380 ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439

Query: 120  NNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLL 179
              E   A   +   EE  K     E ++++ E++KKA E+   A  E + +A EAK+K  
Sbjct: 1440 AEEAKKADEAKKKAEEAKK----AEEAKKKAEEAKKADEAKKKA--EEAKKADEAKKKAE 1493

Query: 180  SSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWE 239
             ++ + +  +   E  +   +A   +     D+AK          +EAK   +  KAE +
Sbjct: 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA--------EEAKKADEAKKAEEK 1545

Query: 240  QKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVI 299
            +K     D +KK+EE   + EK   +     K+ EED      +  + + + +    EV+
Sbjct: 1546 KK----ADELKKAEELKKAEEK---KKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598

Query: 300  YMQETLGQARAESMKLKESFLDKETEL---QSVIQENEELRAREADSVKKVEELSSLLEE 356
             + E   + +AE  K  E    K  EL   +   ++ E+L+ +EA+  KK EEL    EE
Sbjct: 1599 KLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658

Query: 357  AMAKKQTAENGELTDSEKDYDLL-PKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENS 415
               K          D +K  +    +  E        +  E+ K    +++ + +  + +
Sbjct: 1659 NKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718

Query: 416  KEETNGMNDETVELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKIEKELSPDRE 475
            +E      +  ++   AK +    K K +E+K+ E++  ++     E  K  +E+  ++E
Sbjct: 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778

Query: 476  PEPESFEEETNSKVEGSENFGRINGLSSSENIDDGG 511
               E   +E + K     +    +   +  NI +GG
Sbjct: 1779 AVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGG 1814

Length = 2084

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 59/275 (21%), Positives = 112/275 (40%), Gaps = 17/275 (6%)

Query: 91  KNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEE 150
             E   + + +E LK EL +++ E  +  N     +  + +   +  ++  E+E   +EE
Sbjct: 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732

Query: 151 EKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESML 210
           EK K+ +E L   L  +  E    K +L       +  EA+IE+L   L    E    + 
Sbjct: 733 EKLKERLEELEEDLSSLEQEIENVKSEL-------KELEARIEELEEDLHKLEEALNDLE 785

Query: 211 DDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLL 270
               H        I+    + +   +  E +   +   + +   E   LEKEI  L    
Sbjct: 786 ARLSHSR---IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842

Query: 271 KETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI 330
            + +E   + ++E   L    +E+E E+  ++  L    +    LK+   + E +L+ + 
Sbjct: 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902

Query: 331 QENEELRAREADSVKKVEELSSLLEEAMAKKQTAE 365
           ++ EEL A       ++E+    L E  AK +  E
Sbjct: 903 RKIEELEA-------QIEKKRKRLSELKAKLEALE 930

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 63/292 (21%), Positives = 122/292 (41%), Gaps = 22/292 (7%)

Query: 14  KIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTI 73
           +  +EELE + EE  +      ++L  + ++LE   ++L     E+  L  ++  L   +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 74  GRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLL 133
            R               + E  ++ + +  L  EL  ++ E  +     + A   +    
Sbjct: 736 AR--------------LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781

Query: 134 EEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIE 193
            E  +L  ++E  +EE +  ++A++ L + L  ++ EA   +E+L S +      E ++E
Sbjct: 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841

Query: 194 DLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSE 253
           DL   ++  +E  ES       EI  L  +I+E + E +    E    E  L        
Sbjct: 842 DLEEQIEELSEDIES----LAAEIEELEELIEELESELEALLNERASLEEAL----ALLR 893

Query: 254 EENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETL 305
            E   L +E+  L +   E   +    +E+ AQL   L+ +E  +  +QE L
Sbjct: 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 36/287 (12%)

Query: 108 LETVKEEKAQALNNEKLAASSVQNLLEEKHKLINE-LENSREEEEKSKKAMESLASA--- 163
           L TV E   ++ +++     +     E    + NE   NS++ E+ S   +E L      
Sbjct: 80  LRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQN 139

Query: 164 -------LHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHE 216
                  L++  ++A E  EK+L   TE E  + +I  L + L  T+ + + +    K  
Sbjct: 140 AEKNILLLNQARLQALEDLEKIL---TEKEALQGKINILEMRLSETDARIK-LAAQEKIH 195

Query: 217 IGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLL---KET 273
           + +L   +++ ++E  I  A        L   +   +EEN  L+ +I  L   L    ET
Sbjct: 196 VEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAET 255

Query: 274 EEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQ----------ARAESMK-LKESFLDK 322
           EE     ++E + L  SL+E+E++ I  QE + +           + E+++ L +   ++
Sbjct: 256 EERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQ 315

Query: 323 ETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQTAENGEL 369
             +   V+ +N++LR        KV++L + L+EA   K ++   EL
Sbjct: 316 VEKAALVLDQNQDLR-------DKVDKLEASLKEANVSKFSSYKVEL 355

Length = 977

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 44/229 (19%), Positives = 98/229 (42%), Gaps = 19/229 (8%)

Query: 6   ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEK 65
               + +   ++ E+E + E+  + +    E L+ +   L     ++ + +SE+  L+ +
Sbjct: 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR 766

Query: 66  VGLLEMTIGRQKADLDESERKHSMAK-----NETSEMAKTVESLKFELETVKEEKAQALN 120
           +  LE  + + +  L++ E + S ++      E S++ + V  ++  L  ++++  +   
Sbjct: 767 IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826

Query: 121 NEKLAASSVQNLLE--------------EKHKLINELENSREEEEKSKKAMESLASALHE 166
            ++     +Q L E              E   L  + E   EE E+ + A+  L S L +
Sbjct: 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886

Query: 167 VSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKH 215
           +  E  E + +L   + + E  EAQIE  R  L     K E++ ++   
Sbjct: 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 48/298 (16%), Positives = 110/298 (36%), Gaps = 39/298 (13%)

Query: 46  EGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLK 105
           E +N++L    S +  L E +  L                               +   K
Sbjct: 39  ELSNERLRKLRSLLTKLSEALDKLR----------------------SYLPKLNPLREEK 76

Query: 106 FELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALH 165
            ++     E+      E+L    ++  ++E  + I+ELEN  +E E+  + +E   +   
Sbjct: 77  KKVSVKSLEELIKDVEEEL--EKIEKEIKELEEEISELENEIKELEQEIERLEPWGN--- 131

Query: 166 EVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIK 225
              ++          S       E ++E+L++     N +Y S     K  + ++  ++K
Sbjct: 132 -FDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYIS---TDKGYVYVVVVVLK 187

Query: 226 EAKDE--SKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEE 283
           E  DE   ++ K  +E+ EL   +      E    +++E+  +    +   E+     ++
Sbjct: 188 ELSDEVEEELKKLGFERLEL---EEEGTPSELIREIKEELEEIEKERESLLEELKELAKK 244

Query: 284 EAQLRDSLKE-VEAEVIYMQETLGQARAESMKLKESFL--DKETELQSVIQENEELRA 338
             +   +L E +E E+   +      + +     E ++  D+  +L+ +I +     A
Sbjct: 245 YLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKELIDKATGGSA 302

Length = 646

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 62/312 (19%), Positives = 130/312 (41%), Gaps = 32/312 (10%)

Query: 16  RVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKV--------G 67
             E LE Q E   +   S  E L+ +  ++     +L + E  +  L +K+         
Sbjct: 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQL 290

Query: 68  LLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAAS 127
            ++  IG  +A++   ER  +  + E  +  + +  L+ E++ +  E  +          
Sbjct: 291 RVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEE-------LER 343

Query: 128 SVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHET 187
            ++   + + KL  E    +EE E  +  +E +     E   E ++ +EKL   + E   
Sbjct: 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403

Query: 188 YEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKD-ESKISKAEWEQKELHLV 246
            + +++ L+  L+  +E+   +          +  + +E +D   +I K EW+ ++  L 
Sbjct: 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ--LA 461

Query: 247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLG 306
             + K E+E   L++E +R+              ++E ++L+  L E EA+    +E + 
Sbjct: 462 ADLSKYEQELYDLKEEYDRV--------------EKELSKLQRELAEAEAQARASEERVR 507

Query: 307 QARAESMKLKES 318
             RA    LK S
Sbjct: 508 GGRAVEEVLKAS 519

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 66/323 (20%), Positives = 132/323 (40%), Gaps = 25/323 (7%)

Query: 73  IGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEK------LAA 126
             +   +L+E E           E  + +E L+ E E  K E+ QAL  EK         
Sbjct: 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE--KAERYQALLKEKREYEGYELL 229

Query: 127 SSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKL-------- 178
              + L  +K  +  +L +  EE EK  + +  L   L E+     E  +K+        
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289

Query: 179 LSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEW 238
           L  + +    EA+I  L   +     + E   ++   ++    + +    +E +    E 
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDA-EERLAKLEAEIDKLLAEIEELEREIEEE 348

Query: 239 EQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEV 298
            ++         K  EE + L++E+  L   L+E +++   T++E    R+ L++++ E+
Sbjct: 349 RKR-------RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401

Query: 299 IYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAM 358
             ++  L + + E  +L E   D    +  +  +  EL   + D   ++++    LE+  
Sbjct: 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461

Query: 359 AKKQTAENGELTDSEKDYDLLPK 381
           A     E  EL D +++YD + K
Sbjct: 462 ADLSKYEQ-ELYDLKEEYDRVEK 483

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 77/352 (21%), Positives = 151/352 (42%), Gaps = 15/352 (4%)

Query: 11  EEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLE 70
           EE K R+ E+E    EA K++      L+ ++ +LE   ++L + E EI  L+E++  L 
Sbjct: 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLR 311

Query: 71  MTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQ 130
             +   +  L++ +      +    ++ K    L+   E   E         K     ++
Sbjct: 312 ALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLE 371

Query: 131 NLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEA 190
            L +E  K +  L+   E  ++ K+ +  L++AL E+  E  E +++L   + E E  E 
Sbjct: 372 ELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEE 431

Query: 191 QIEDL--RIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWE----QKELH 244
           +I+ L  +I    + E   + L  A  +  +    + E  ++  +   E E    ++EL 
Sbjct: 432 EIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELS 491

Query: 245 LVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQET 304
                 +  EE   LEKE+  L   L E  E     +  + +L + L+++E  +  ++E 
Sbjct: 492 REKEEAELREEIEELEKELRELEEELIELLELE---EALKEELEEKLEKLENLLEELEEL 548

Query: 305 LGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEE 356
             + + + +K +        +L+  +QE +EL         + EEL  L E 
Sbjct: 549 KEKLQLQQLKEELR------QLEDRLQELKELLEELRLLRTRKEELEELRER 594

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 97/506 (19%), Positives = 201/506 (39%), Gaps = 17/506 (3%)

Query: 11   EEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLE 70
            EE K + +  + +AEE    K+ A E+        +  ++    A ++  A + K    E
Sbjct: 1374 EEAKKKADAAKKKAEE----KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429

Query: 71   MTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQ 130
                 +     E  +K   AK +  E  K  E+ K   E  K ++A+    E   A   +
Sbjct: 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489

Query: 131  NLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEA 190
               EE  K  +E + + E +   KKA E+  +   + + EA++A+E   + + +    + 
Sbjct: 1490 KKAEEAKKKADEAKKAAEAK---KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546

Query: 191  QIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVK 250
            + ++L+   +    + +   ++AK         +++A++  K  +A  E+      +  K
Sbjct: 1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606

Query: 251  KSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARA 310
               EE    E+   +   L K  EE     K E+ + +++ ++ +AE +   E   + +A
Sbjct: 1607 MKAEEAKKAEEAKIKAEELKKAEEE---KKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663

Query: 311  ESMKLKESFLDKETELQSVIQENE----ELRAREADSVKKVEELSSLLEEAMAKKQTAEN 366
                 K     K+ E     +E+E    E   +EA+  KK EEL     E   K +  + 
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723

Query: 367  GELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKEETNGMNDET 426
             E  +  K  +   +  E  ++   A+ +E+ K  +   + +E   E   EE     +  
Sbjct: 1724 AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE---EKKAEEIRKEKEAV 1780

Query: 427  VELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKIEKELSPDREPEPESFEEETN 486
            +E    + D       + + K+  D+   +     E   +  +     +   +   +  N
Sbjct: 1781 IEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKN 1840

Query: 487  SKVEGSENFGRINGLSSSENIDDGGS 512
             ++E ++ F +     ++EN +DG  
Sbjct: 1841 MQLEEADAFEKHKFNKNNENGEDGNK 1866

Length = 2084

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 15/253 (5%)

Query: 135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED 194
           + H+ +N LE+   E ++  +  E       E   EA E  E+    + E ET EA+IED
Sbjct: 203 DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIED 262

Query: 195 LRIVLKATNEKYESMLD---DAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKK 251
           LR  +  T  + E + +   D +  +  L     +   E+ +  A+ E  E    +   +
Sbjct: 263 LRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDR 322

Query: 252 SEEENSSLE----------KEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYM 301
            EE    LE          +E   L     + EE A   +EE A+L   L+E    V   
Sbjct: 323 DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDR 382

Query: 302 QETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKK 361
           +E + +   E  +L+E F D   +L +     EELR    +  ++  EL + L    A++
Sbjct: 383 REEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT--ARE 440

Query: 362 QTAENGELTDSEK 374
           +  E   L ++ K
Sbjct: 441 RVEEAEALLEAGK 453

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 69/341 (20%), Positives = 137/341 (40%), Gaps = 18/341 (5%)

Query: 10  VEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLL 69
           ++  + R+E L+ +        R     LD + ++L   + K+ + E EI  L+++   L
Sbjct: 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL 735

Query: 70  EMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSV 129
           +  +   + DL   E++    K+E  E+   +E L+ +L  ++E          L A   
Sbjct: 736 KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL------NDLEARLS 789

Query: 130 QNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYE 189
            + + E    +++LE      E   + +E   + L        +  ++L   + + +   
Sbjct: 790 HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849

Query: 190 AQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCV 249
             IE     L    E+ E  L   + E  L     +    + +  + E + +EL      
Sbjct: 850 KSIEKEIENLNGKKEELEEEL--EELEAALRDLESRLGDLKKERDELEAQLREL------ 901

Query: 250 KKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQAR 309
              E +   LE +I +    L E +    A +EE +++ D   E E E+   + +L   +
Sbjct: 902 ---ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE-EIPEEELSLEDVQ 957

Query: 310 AESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEEL 350
           AE  +++E     E      IQE EE+  R  +  +K  +L
Sbjct: 958 AELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKL 998

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 69/360 (19%), Positives = 142/360 (39%), Gaps = 19/360 (5%)

Query: 44  QLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVES 103
           QLEG   + +D   +  AL+  V  +   I + +  L  S  K    + +  E   + ES
Sbjct: 144 QLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSES 203

Query: 104 LKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASA 163
           +  E   +  ++A+           +Q L ++K +    LE +++ E + ++    L   
Sbjct: 204 MSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQR 263

Query: 164 LHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESM-------------- 209
           L +++++ R+ + + +  Q E+E     +  L+  L+++ +K   +              
Sbjct: 264 LKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLRDHT 323

Query: 210 ---LDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRL 266
              L  ++ E   ++  + +     K  +++W Q+   L    +  ++    L  E+ +L
Sbjct: 324 IAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLKL 383

Query: 267 VNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETEL 326
              L+E        + E    +D  +   +E       L  A     K KE   +++ EL
Sbjct: 384 EEWLQEERSQREKLEVELGIEKDCNRVQLSENRRELSELRSALRVLQKEKEQLQEEKQEL 443

Query: 327 QSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQTAENGELTDSEKDYDLLPKVVEFS 386
              I+  E    +EAD   K  E ++  E+A +    A   +L DS  +  L     E S
Sbjct: 444 LDYIRVLELRLDKEADE--KWAEDAATCEDAKSYLHRAAYIDLLDSIDESPLDESSSELS 501

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 59/313 (18%), Positives = 117/313 (37%), Gaps = 28/313 (8%)

Query: 56  ESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEK 115
           E E   L ++   LE      +  L   E +      E SE+ K +E ++  LE + ++ 
Sbjct: 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI 281

Query: 116 AQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAK 175
                 E+L       + E+  +L  E+ +      + ++ +E              + +
Sbjct: 282 KDLGEEEQLR------VKEKIGELEAEIASLERSIAEKERELEDAEE-------RLAKLE 328

Query: 176 EKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISK 235
            ++     E E  E +IE+ R       +K      + K E+  L   ++E   E   ++
Sbjct: 329 AEIDKLLAEIEELEREIEEERKRR----DKLTEEYAELKEELEDLRAELEEVDKEFAETR 384

Query: 236 AEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVE 295
            E +     L    +K + E + L++E++RL   L+   E+        A +   + E+E
Sbjct: 385 DELKDYREKL----EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440

Query: 296 AEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLE 355
            E       + +   +  +L     D     Q +    EE    E    K++ +L   L 
Sbjct: 441 EEKEDKALEIKKQEWKLEQLAA---DLSKYEQELYDLKEEYDRVE----KELSKLQRELA 493

Query: 356 EAMAKKQTAENGE 368
           EA A+ + +E   
Sbjct: 494 EAEAQARASEERV 506

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 185 HETYEAQIEDLRIVLKATN-EKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKEL 243
           HE     IEDL+  L      K  S+L      +  L + + +    + + + + +    
Sbjct: 26  HELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPK---LNPLREEKKKVSVK 82

Query: 244 HLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVE 295
            L + +K  EEE   +EKEI  L   + E E        E  +L   ++ +E
Sbjct: 83  SLEELIKDVEEELEKIEKEIKELEEEISELE-------NEIKELEQEIERLE 127

Length = 646

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 74/361 (20%), Positives = 141/361 (39%), Gaps = 14/361 (3%)

Query: 16  RVEELEMQAEEAHKLKRSASESLDAVMRQLEGNN-DKLHDAESEIAALKEKVGLLEMTIG 74
            +E+ E  +E   ++ + A   ++ +  QL     D     E+    LKE   L E+   
Sbjct: 165 GLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEE 224

Query: 75  RQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLE 134
           +++ +L++          E  E  + +E LK  L  ++  + +AL   +     ++ LLE
Sbjct: 225 QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLE 284

Query: 135 EKHKLINELE-------------NSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSS 181
           E  + I  LE                    +  + +     +L E   +  E  EKL S 
Sbjct: 285 ELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESE 344

Query: 182 QTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQK 241
             E    + ++  L        E+    L+    +       ++EA  E K   AE    
Sbjct: 345 LEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAA 404

Query: 242 ELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYM 301
              + + +++ E+E   LE+E+  L   +K+ EE     + +E  + +     E   +  
Sbjct: 405 LEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCG 464

Query: 302 QETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKK 361
           QE   +   E ++L E  L++  E  S  +E  ELR    +  K++ EL   L E +  +
Sbjct: 465 QELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELE 524

Query: 362 Q 362
           +
Sbjct: 525 E 525

Length = 908

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	545
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.87
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.73
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.5
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	99.5
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.49
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.37
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.35
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	99.27
PRK02224	880	chromosome segregation protein; Provisional	99.25
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.15
PRK02224	880	chromosome segregation protein; Provisional	99.13
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.05
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	99.03
PRK04863	1486	mukB cell division protein MukB; Provisional	98.98
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.95
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.94
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.91
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.88
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.75
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.75
PRK03918	880	chromosome segregation protein; Provisional	98.7
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.63
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.57
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.56
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.56
KOG4673	961	consensus Transcription factor TMF, TATA element m	98.53
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.51
PRK01156	895	chromosome segregation protein; Provisional	98.51
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.39
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.35
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.22
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.19
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.16
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.16
PRK01156	895	chromosome segregation protein; Provisional	98.15
KOG0963	629	consensus Transcription factor/CCAAT displacement	98.15
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.15
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.14
PRK04778	569	septation ring formation regulator EzrA; Provision	98.06
PRK04778	569	septation ring formation regulator EzrA; Provision	98.06
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.03
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.98
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.95
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.91
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.74
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.7
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.67
PHA02562	562	46 endonuclease subunit; Provisional	97.6
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.6
PHA02562	562	46 endonuclease subunit; Provisional	97.59
PRK04863	1486	mukB cell division protein MukB; Provisional	97.58
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.56
PRK11637	428	AmiB activator; Provisional	97.54
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.36
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.31
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.3
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	97.27
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.19
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.18
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.15
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.14
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.09
PLN03188	1320	kinesin-12 family protein; Provisional	97.04
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.86
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.86
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	96.82
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.81
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.81
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.8
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.77
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.77
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.76
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.68
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.62
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.62
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.61
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.6
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.58
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.54
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.51
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.48
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.47
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.43
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.42
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.4
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	96.36
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.34
PRK10246	1047	exonuclease subunit SbcC; Provisional	96.31
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.27
PRK09039	343	hypothetical protein; Validated	96.11
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.11
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.09
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.06
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	96.06
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.97
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	95.94
PRK09039	343	hypothetical protein; Validated	95.92
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	95.85
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.82
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.67
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.67
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.63
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.59
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.56
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.55
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.5
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.49
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	95.4
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.39
KOG0964	1200	consensus Structural maintenance of chromosome pro	95.37
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.32
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.31
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.24
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.22
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	95.21
COG4477	570	EzrA Negative regulator of septation ring formatio	95.21
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.21
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	95.09
KOG0249	916	consensus LAR-interacting protein and related prot	95.08
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.95
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	94.93
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.89
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.87
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	94.84
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.82
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	94.76
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	94.76
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	94.7
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	94.34
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	94.23
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.18
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.07
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	93.98
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	93.95
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	93.93
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.92
KOG0018	1141	consensus Structural maintenance of chromosome pro	93.86
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.81
KOG1003	205	consensus Actin filament-coating protein tropomyos	93.75
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	93.65
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.58
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.42
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.2
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.16
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	93.12
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.97
PRK11281	1113	hypothetical protein; Provisional	92.61
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	92.48
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.33
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	92.19
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.15
COG5185	622	HEC1 Protein involved in chromosome segregation, i	92.12
PF13514	1111	AAA_27: AAA domain	92.08
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.0
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	91.88
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.56
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.56
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	91.51
COG4477	570	EzrA Negative regulator of septation ring formatio	91.43
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	91.4
PF13514	1111	AAA_27: AAA domain	91.22
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.63
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	90.62
KOG0979	1072	consensus Structural maintenance of chromosome pro	90.61
PRK10884	206	SH3 domain-containing protein; Provisional	90.57
COG4372	499	Uncharacterized protein conserved in bacteria with	90.42
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	90.1
COG4026	290	Uncharacterized protein containing TOPRIM domain,	89.78
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.66
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	89.56
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	89.56
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	89.26
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.24
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	89.17
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	89.06
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	88.98
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	88.51
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	88.43
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	88.32
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	88.21
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	87.99
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	87.57
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	87.1
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	86.99
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	86.99
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	86.7
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	85.9
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	85.89
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	85.77
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	85.66
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	85.65
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	85.42
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	85.02
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	84.6
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	83.69
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	83.39
PF05276	239	SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int	83.3
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	82.7
PRK10884	206	SH3 domain-containing protein; Provisional	82.67
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	82.56
PLN02939	977	transferase, transferring glycosyl groups	82.45
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	82.18
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	82.05
PF11570	136	E2R135: Coiled-coil receptor-binding R-domain of c	81.9
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	81.57
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	81.42
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	80.85
KOG0979	1072	consensus Structural maintenance of chromosome pro	80.48
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	80.39
COG2433	652	Uncharacterized conserved protein [Function unknow	80.31
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	80.17
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	80.09

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.87  E-value=2.6e-18  Score=207.27  Aligned_cols=312  Identities=24%  Similarity=0.294  Sum_probs=289.7

Q ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           37 SLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA  116 (545)
Q Consensus        37 SL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~  116 (545)
                      ....++.+++++..++.....-+..|..++..++.-++.|+...+.+..+++..+++.+.+.+.+..+...++.+.+.+.
T Consensus      1408 ~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e 1487 (1930)
T KOG0161|consen 1408 AKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLE 1487 (1930)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            44556778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 042557          117 QALNNEKLAASSVQNLLE---EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIE  193 (545)
Q Consensus       117 el~ekEk~lsseIe~L~e---el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie  193 (545)
                      .+....+.++.+|.++..   ++++..++|+..+...+..+   .+|+.+|.+++++++-...+..+.+.++.+++.+++
T Consensus      1488 ~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~---~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~e 1564 (1930)
T KOG0161|consen 1488 ELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEK---EELQAALEELEAALEAEEDKKLRLQLELQQLRSEIE 1564 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            998888999999999998   77888889999988888888   899999999999999999988888888888888877


Q ss_pred             H----------------------HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHh
Q 042557          194 D----------------------LRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKK  251 (545)
Q Consensus       194 ~----------------------Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~  251 (545)
                      +                      +++.| ++|+|.+       .++.+++++++.++++++.+++.+|....++++.+++
T Consensus      1565 r~l~ek~Ee~E~~rk~~~~~i~~~q~~L-e~E~r~k-------~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk 1636 (1930)
T KOG0161|consen 1565 RRLQEKDEEIEELRKNLQRQLESLQAEL-EAETRSK-------SEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKK 1636 (1930)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHH-------HHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHh
Confidence            7                      55555 4777766       8899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042557          252 SEEENSSLEKEI-------NRLVNLLKETEEDACATKEEEAQLRDSL-------KEVEAEVIYMQETLGQARAESMKLKE  317 (545)
Q Consensus       252 ~eee~~~~~~e~-------~~l~e~l~~~E~~~~~~~~E~~~lr~~L-------k~ae~e~~ea~e~~~ea~~e~~~Lk~  317 (545)
                      .+..+..++.++       ..+++++..+++++.++++|++.|+..+       ++++.++.++.+.++...+.|+.|..
T Consensus      1637 ~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~ 1716 (1930)
T KOG0161|consen 1637 LQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTA 1716 (1930)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhh
Confidence            999999998888       6899999999999999999999999999       88999999999999999999999999


Q ss_pred             hHHhhHHHHHHHHHHHHH----HHhhHHHHHHhHHHHHHHHHHHHh
Q 042557          318 SFLDKETELQSVIQENEE----LRAREADSVKKVEELSSLLEEAMA  359 (545)
Q Consensus       318 ~l~dkE~eLq~i~~Ene~----Lr~~Ea~a~~~i~EL~~ll~ea~~  359 (545)
                      ...++|++|..+..++++    ++++++++++.+.++.++.++...
T Consensus      1717 ~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~ 1762 (1930)
T KOG0161|consen 1717 EKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRK 1762 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHH
Confidence            999999999999999998    999999999999999999987643

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.73  E-value=4.3e-19  Score=205.11  Aligned_cols=332  Identities=25%  Similarity=0.285  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 042557           17 VEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSE   96 (545)
Q Consensus        17 l~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~s   96 (545)
                      +..++.+++.++.......-...-++.+++++...|+..+..+..|.++...|+..++.|+..++.+...++.++++.+.
T Consensus       330 L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~  409 (859)
T PF01576_consen  330 LQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARE  409 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33444444444444444445555688899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           97 MAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLE---EKHKLINELENSREEEEKSKKAMESLASALHEVSVEARE  173 (545)
Q Consensus        97 lqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~e---el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~ee  173 (545)
                      +.++++.|+..++.+...+..+....+.+..+|.++..   ..++..++|+..+..++...   +++..+|.+++..+..
T Consensus       410 ~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~---~El~~~leE~E~~l~~  486 (859)
T PF01576_consen  410 LETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEK---EELQEQLEEAEDALEA  486 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            99999999999999999999888888999999999976   56777899999999999888   8899999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHh
Q 042557          174 AKEKLLSSQTEHETYEAQIED----------------------LRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDES  231 (545)
Q Consensus       174 akekl~~~Q~Ele~~r~Eie~----------------------Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~  231 (545)
                      ......+++.+|.+++.++++                      |++.| +.|.+++       .++.+++++++..++++
T Consensus       487 ~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~L-E~E~k~r-------~~~~r~kkKLE~~l~eL  558 (859)
T PF01576_consen  487 EEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAEL-EEERKER-------AEALREKKKLESDLNEL  558 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHH-HHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            999999999999999999877                      67777 6777766       78899999999999999


Q ss_pred             HHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHH
Q 042557          232 KISKAEWEQKELHLVDCVKKSEEENSSLEKEI-------NRLVNLLKETEEDACATKEEEAQLRDSL-------KEVEAE  297 (545)
Q Consensus       232 e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~-------~~l~e~l~~~E~~~~~~~~E~~~lr~~L-------k~ae~e  297 (545)
                      +..+++.+....+++++|++++..++.++.++       +.+...+..+++++..+..|++.++..+       +.++++
T Consensus       559 e~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~e  638 (859)
T PF01576_consen  559 EIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESE  638 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999       4578889999999999999999999988       789999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHH----HHhhHHHHHHhHHHHHHHHHHHHh
Q 042557          298 VIYMQETLGQARAESMKLKESFLDKETELQSVIQENEE----LRAREADSVKKVEELSSLLEEAMA  359 (545)
Q Consensus       298 ~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~----Lr~~Ea~a~~~i~EL~~ll~ea~~  359 (545)
                      +.++...++.+.+.++.|-..+..+|++++.+..++++    ++.+++++++.+..+.+|..+.+.
T Consensus       639 l~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~  704 (859)
T PF01576_consen  639 LDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQ  704 (859)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999    999999999999999999888755

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.50  E-value=1.6e-09  Score=128.19  Aligned_cols=314  Identities=18%  Similarity=0.199  Sum_probs=162.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557            4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD   79 (545)
Q Consensus         4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~   79 (545)
                      .|+.|.+.++..++..|+.|++.|++|..+..    +...+...++......+..+..++..+..++..+...+..+...
T Consensus       180 ~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  259 (1164)
T TIGR02169       180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE  259 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999998775    55555555666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           80 LDESERKHSMAKNETSEMAKTVESLK-FELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAME  158 (545)
Q Consensus        80 leE~k~eL~~~ekEl~slqkelesLk-seLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~E  158 (545)
                      +..+...+......+..++..+..+. .++..+..++..+..+...+...+..+..++..+...+..+.....       
T Consensus       260 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-------  332 (1164)
T TIGR02169       260 ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID-------  332 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            66666666656555555555555533 3333333333333333333333333333333333333333333332       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 042557          159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEW  238 (545)
Q Consensus       159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~  238 (545)
                      .+...+..+..+.......+...+..+..++.++..++..+...+..+.    ....++..+...+..+..+....... 
T Consensus       333 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~-  407 (1164)
T TIGR02169       333 KLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA----ETRDELKDYREKLEKLKREINELKRE-  407 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3333333333333333333333333333333333333333332222221    22222333333333332222222222 


Q ss_pred             HhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 042557          239 EQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKES  318 (545)
Q Consensus       239 ~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~  318 (545)
                                +..++.++..+..++..+...+...+.++..+..+...+...+..+...+......+..+......+...
T Consensus       408 ----------~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~  477 (1164)
T TIGR02169       408 ----------LDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE  477 (1164)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      2224444444444444444444444445555555555566666556666666666666666666666666


Q ss_pred             HHhhHHHHHHHHHHHHHHHhh
Q 042557          319 FLDKETELQSVIQENEELRAR  339 (545)
Q Consensus       319 l~dkE~eLq~i~~Ene~Lr~~  339 (545)
                      +......+..+..++..++..
T Consensus       478 l~~l~~~l~~l~~~~~~l~~~  498 (1164)
T TIGR02169       478 YDRVEKELSKLQRELAEAEAQ  498 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666655544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=99.50  E-value=3.2e-10  Score=125.51  Aligned_cols=196  Identities=32%  Similarity=0.365  Sum_probs=171.5

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           68 LLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSR  147 (545)
Q Consensus        68 ~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~  147 (545)
                      .+...+.....+|++.+..|..+..+++.++..+.+|+.+|..++.++..+.+++......|.+|..+++++..+|+.+.
T Consensus       278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~  357 (522)
T PF05701_consen  278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK  357 (522)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence            34445888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 042557          148 EEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEA  227 (545)
Q Consensus       148 ~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~  227 (545)
                      ....+.+..+.+|..+|+.+..++++++.....++.++..++.+++..++.+..++.||+.++.++..-..+....+..+
T Consensus       358 ~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~i  437 (522)
T PF05701_consen  358 AEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEI  437 (522)
T ss_pred             hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888888888887


Q ss_pred             HhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHH
Q 042557          228 KDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEIN  264 (545)
Q Consensus       228 ~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~  264 (545)
                      +.-.+.....- ......-..|+.+-+++..|.....
T Consensus       438 k~l~e~~~~~~-~~~~~~~~~Vtls~eEy~~L~~ka~  473 (522)
T PF05701_consen  438 KALSESESSSR-ASDSESSSKVTLSLEEYESLSKKAE  473 (522)
T ss_pred             HHhhccccccc-ccccCCCCCeeecHHHHHHHHHHHH
Confidence            76333322211 1111133478888888877765553

Several sequences in this family are described as being myosin heavy chain-like.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.49  E-value=2.1e-09  Score=126.58  Aligned_cols=146  Identities=21%  Similarity=0.220  Sum_probs=101.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557            4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD   79 (545)
Q Consensus         4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~   79 (545)
                      .||.|++.|+..++..|+.|+++|++|..+..    +...+...++..+...+..+...+..+...+..+...+..+...
T Consensus       182 ~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (1179)
T TIGR02168       182 ERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAE  261 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999998887    55666666777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           80 LDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREE  149 (545)
Q Consensus        80 leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~e  149 (545)
                      +..++..+......+..++..+..+...+..+...+..+..+...+...+..+...+..+..++..+...
T Consensus       262 ~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~  331 (1179)
T TIGR02168       262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK  331 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777666666666666666666666666665555444444444444444444444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.37  E-value=3.3e-08  Score=117.07  Aligned_cols=198  Identities=18%  Similarity=0.191  Sum_probs=141.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557            4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD   79 (545)
Q Consensus         4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~   79 (545)
                      .++.+.+.+++.++..|+.+.+.+.+|..+..    ..+..+...+..+...+..+..++..++.++..+...+..+...
T Consensus       187 ~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~  266 (1164)
T TIGR02169       187 ERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKR  266 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999877    56667777888888888889999999999888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           80 LDESERKHSMAKNETSEMA-KTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAME  158 (545)
Q Consensus        80 leE~k~eL~~~ekEl~slq-kelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~E  158 (545)
                      +......+...+..+..+. ..+..+..++..+...+..+..+...+...+..+..++..+..++..+....+.....+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~  346 (1164)
T TIGR02169       267 LEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE  346 (1164)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888777744 455555555555555555555555555666666666666666666666555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042557          159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKA  201 (545)
Q Consensus       159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~  201 (545)
                      .+...+..+...+..+...+...+..+..++.++..+...+..
T Consensus       347 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  389 (1164)
T TIGR02169       347 EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD  389 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555565666665555555555555555555555544444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.35  E-value=5.6e-08  Score=116.87  Aligned_cols=306  Identities=23%  Similarity=0.287  Sum_probs=169.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557            4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD   79 (545)
Q Consensus         4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~   79 (545)
                      .|+.|++.|+++++..|+.|++.|.+|..+..    +...++...|..++..+..+...+..++..+..+...+......
T Consensus       189 ~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  268 (1163)
T COG1196         189 ERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKE  268 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999998    78888888888888888888888888887777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           80 LDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMES  159 (545)
Q Consensus        80 leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~Ee  159 (545)
                      +..++..+..+...+..++..+..+...+..+..++..+..+...+...+..+......+...+......++........
T Consensus       269 i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  348 (1163)
T COG1196         269 IEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE  348 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            77777777777777666666666666666665555554444444444444444444444444444333333332211112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 042557          160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWE  239 (545)
Q Consensus       160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~  239 (545)
                      +...+..+.....+......              .+...+...-..++..+..                  +....+.+.
T Consensus       349 ~~~~~~~~~~~~~e~~~~~~--------------~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~  396 (1163)
T COG1196         349 LEQLLAELEEAKEELEEKLS--------------ALLEELEELFEALREELAE------------------LEAELAEIR  396 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------------HHhhhHHHHHHHHHHHHHH------------------HHHHHHHHH
Confidence            22111111111111111111              0000000000111111111                  111111122


Q ss_pred             hhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 042557          240 QKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESF  319 (545)
Q Consensus       240 ~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l  319 (545)
                      ..=..+-.+|..++..+..+...+..+...+...+.+...+..+.+.++..+..+...+..+..++..+......+...+
T Consensus       397 ~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  476 (1163)
T COG1196         397 NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEEL  476 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21112222333344444444445555555555444444455555555566666666666666666666666666666667


Q ss_pred             HhhHHHHHHHHHHHHHHHhhHH
Q 042557          320 LDKETELQSVIQENEELRAREA  341 (545)
Q Consensus       320 ~dkE~eLq~i~~Ene~Lr~~Ea  341 (545)
                      .+....++.+...++.|.....
T Consensus       477 ~~~~~~l~~~~~~~~~l~~~~~  498 (1163)
T COG1196         477 QRLEKELSSLEARLDRLEAEQR  498 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            7777777777666666554433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=99.27  E-value=1e-06  Score=97.95  Aligned_cols=361  Identities=24%  Similarity=0.301  Sum_probs=188.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHhhhhhhHHHHHHHHHHH-------HHHHHHHHHHH-----H
Q 042557           14 KIRVEELEMQAEEAHKLKRSAS-------ESLDAVMRQLEGNNDKLHDAESEIAAL-------KEKVGLLEMTI-----G   74 (545)
Q Consensus        14 kkql~sLE~QAeKA~ky~elk~-------lSL~l~t~eLE~lk~~LeeaesEI~~L-------qeKve~LE~ev-----~   74 (545)
                      ..++..++.++.++++....+.       ..|..+..-+++++.+|+.+...-..-       +-+...++..+     .
T Consensus        33 e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~  112 (522)
T PF05701_consen   33 ETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASV  112 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchH
Confidence            3344444444444444444444       666677777777777776655432221       11223333322     2


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           75 RQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE-------KLAASSVQNLLEEKHKLINELENSR  147 (545)
Q Consensus        75 ~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE-------k~lsseIe~L~eel~kl~~ELE~~~  147 (545)
                      .|+.+++-.+.++..+-.++.....+|..++.++..+-.....+..+-       ......+..|+.++..+...|+...
T Consensus       113 ~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~  192 (522)
T PF05701_consen  113 AWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAK  192 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            266677777777777777777777777777777777766533333333       2233344455555555555555442


Q ss_pred             HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHH-HH------
Q 042557          148 EEEEKSK-----------KAMESLASALHEVSVEAREAKEKLL---SSQTEHETYEAQIEDLRIVLKATNE-KY------  206 (545)
Q Consensus       148 ~eeEkek-----------ka~EeLa~AL~E~e~E~eeakekl~---~~Q~Ele~~r~Eie~Lq~~L~~aE~-k~------  206 (545)
                      ..-....           .....+...|.+....+..++..+.   .++..+.....++..|+.-|..+.. ++      
T Consensus       193 ~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~  272 (522)
T PF05701_consen  193 LAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEA  272 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            2110000           1113344445555555555554442   2224444445555555555544443 11      


Q ss_pred             ---------------------HHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHH
Q 042557          207 ---------------------ESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINR  265 (545)
Q Consensus       207 ---------------------~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~  265 (545)
                                           +..|..++.++.+++..++.++.+++..+.+-..    +-.......-.+.+|..++++
T Consensus       273 ~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~----lke~e~~a~~~v~~L~~eL~~  348 (522)
T PF05701_consen  273 KEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELER----LKEREKEASSEVSSLEAELNK  348 (522)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHhhHHHHHHH
Confidence                                 1223344444555555555555555555442211    000111233333344444444


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557          266 LVNLLKETEEDACATKEEEAQLRDSLKEV-------EAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRA  338 (545)
Q Consensus       266 l~e~l~~~E~~~~~~~~E~~~lr~~Lk~a-------e~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~  338 (545)
                      ++..|..+...-.-.++....|-..|.++       ..++..++..+..++.+.-..+..+...|..|+.+..+.+..|.
T Consensus       349 ~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKa  428 (522)
T PF05701_consen  349 TRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKA  428 (522)
T ss_pred             HHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443333222222233333333344444       44444455555566777788888899999999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHHHhhccccccCcccccccccccc
Q 042557          339 READSVKKVEELSSLLEEAMAKKQTAENGELTDSEKDYDLL  379 (545)
Q Consensus       339 ~Ea~a~~~i~EL~~ll~ea~~~~~~~~~~~~~~~~~~~~~~  379 (545)
                      +|+.|...|+-|+.--..+.... ...+|.+|-|-..|..|
T Consensus       429 sEa~Ala~ik~l~e~~~~~~~~~-~~~~~~Vtls~eEy~~L  468 (522)
T PF05701_consen  429 SEALALAEIKALSESESSSRASD-SESSSKVTLSLEEYESL  468 (522)
T ss_pred             HHHHHHHHHHHhhcccccccccc-cCCCCCeeecHHHHHHH
Confidence            99999988887765544332211 12556677776666433

Several sequences in this family are described as being myosin heavy chain-like.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.25  E-value=1.9e-06  Score=100.63  Aligned_cols=210  Identities=19%  Similarity=0.229  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          125 AASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNE  204 (545)
Q Consensus       125 lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~  204 (545)
                      +...+..+..++..+...+......+...+..++++..+|.++.....+....+..++.+++.++..+..++..+...+.
T Consensus       361 l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~  440 (880)
T PRK02224        361 LREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARE  440 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444444444444444444434444555555555555555555555555554433332


Q ss_pred             HHHHhH---Hh-----------------HHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHH-----
Q 042557          205 KYESML---DD-----------------AKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSL-----  259 (545)
Q Consensus       205 k~~~~l---~e-----------------a~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~-----  259 (545)
                      -+..+-   .+                 ...+.....+.+...+.+++.....|+. ..+-++.+...+.++..+     
T Consensus       441 ~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~-~~e~l~~~~~~~~~l~~l~~~~~  519 (880)
T PRK02224        441 RVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEE-RLERAEDLVEAEDRIERLEERRE  519 (880)
T ss_pred             HHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            222211   00                 0012233334444456666777777776 444444554444444444     


Q ss_pred             --HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557          260 --EKEINRLVNLLKETEEDACATKEEEAQLRDSL-------KEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI  330 (545)
Q Consensus       260 --~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L-------k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~  330 (545)
                        ...++...+.+..++.++..+..+.+.|+..+       ..++++..++...+..+...+..|...+..++ ++..+.
T Consensus       520 ~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~  598 (880)
T PRK02224        520 DLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLL  598 (880)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence              44455667777788888888999999888888       33455555555666666666666666666665 455555


Q ss_pred             HHHHHH
Q 042557          331 QENEEL  336 (545)
Q Consensus       331 ~Ene~L  336 (545)
                      .++..+
T Consensus       599 ~~i~~~  604 (880)
T PRK02224        599 AAIADA  604 (880)
T ss_pred             HHHHHH
Confidence            554443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.15  E-value=2.4e-06  Score=101.00  Aligned_cols=195  Identities=21%  Similarity=0.278  Sum_probs=143.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 042557            5 YARNLVEEWKIRVEELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADL   80 (545)
Q Consensus         5 RV~DLl~Evkkql~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~l   80 (545)
                      .+...+...++++..++...+...+|..+..    ..+..+..++..+...+..+...+..+...+..+...+..++..+
T Consensus       190 el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (1179)
T TIGR02168       190 RLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL  269 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888888888888888888888777    555666778888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           81 DESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESL  160 (545)
Q Consensus        81 eE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeL  160 (545)
                      ..+...+...+..+..++..+..+...+......+..+..+...+...+..+..++..+..++..+...+......+..+
T Consensus       270 ~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  349 (1179)
T TIGR02168       270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL  349 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888777777777777777777777777777777777776666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557          161 ASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL  199 (545)
Q Consensus       161 a~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L  199 (545)
                      ...+..+...+......+..+...+..++.++..++..+
T Consensus       350 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (1179)
T TIGR02168       350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKV  388 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666665555555555444444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.13  E-value=1.9e-05  Score=92.37  Aligned_cols=201  Identities=22%  Similarity=0.263  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHhHHHHHHHHHHHHHHH
Q 042557          151 EKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATN---EKYESMLDDAKHEIGLLTNIIKEA  227 (545)
Q Consensus       151 Ekekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE---~k~~~~l~ea~~e~~~lkk~~E~~  227 (545)
                      .........+...+..+..++..+...+...+..+..++.++..+...|.++.   ..|...|.++..++..+...+..+
T Consensus       352 ~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~  431 (880)
T PRK02224        352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL  431 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444455555556666666666666666666666666665433   244455555555555555444333


Q ss_pred             Hh---HhHHHHHHHHh--hhh---------------h----HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 042557          228 KD---ESKISKAEWEQ--KEL---------------H----LVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEE  283 (545)
Q Consensus       228 ~~---E~e~s~~~~~~--kE~---------------~----~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E  283 (545)
                      .+   .+..++.....  .+.               +    +...|+....++..+..+++.+...+...+..... ..+
T Consensus       432 ~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~-~~~  510 (880)
T PRK02224        432 EATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA-EDR  510 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            33   22222222220  001               1    23444455555555555554444433333332111 333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 042557          284 EAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSS  352 (545)
Q Consensus       284 ~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~  352 (545)
                      ...|+..+..++..+......++.+......|...+.+++.+++......+.++..-..+...+.++..
T Consensus       511 l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (880)
T PRK02224        511 IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS  579 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444444444333333333333333

>TIGR00606 rad50 rad50

Probab=99.05  E-value=1e-05  Score=98.64  Aligned_cols=59  Identities=12%  Similarity=0.123  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHH--HHHhhHHHHHHhHHHHH
Q 042557          293 EVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENE--ELRAREADSVKKVEELS  351 (545)
Q Consensus       293 ~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene--~Lr~~Ea~a~~~i~EL~  351 (545)
                      ....+...+...++.+.+..+.+...+..+++.++.+..+++  ..+.++.++++.+-++.
T Consensus      1051 ~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka~i~~~ 1111 (1311)
T TIGR00606      1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMR 1111 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHH
Confidence            357888888999999999999999999999999999999995  48999999888776664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=99.03  E-value=2.3e-05  Score=86.82  Aligned_cols=88  Identities=18%  Similarity=0.266  Sum_probs=60.9

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557          201 ATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACAT  280 (545)
Q Consensus       201 ~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~  280 (545)
                      ....+.-..|-.|+.+..-++..+.....++......|..--..|...+.....++..|..++.++-+.|...-.+++.+
T Consensus       318 ~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL  397 (546)
T PF07888_consen  318 NVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKL  397 (546)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556677777888888888888888888888888875555555566666777777777777777777665555555


Q ss_pred             HHHHHHHH
Q 042557          281 KEEEAQLR  288 (545)
Q Consensus       281 ~~E~~~lr  288 (545)
                      .-+..+.+
T Consensus       398 ~~ql~ke~  405 (546)
T PF07888_consen  398 EKQLGKEK  405 (546)
T ss_pred             HHHHHHhh
Confidence            55554444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.98  E-value=1.3e-05  Score=98.27  Aligned_cols=334  Identities=14%  Similarity=0.108  Sum_probs=198.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557            4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSAS------ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQK   77 (545)
Q Consensus         4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~------lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le   77 (545)
                      .|+.|++.|+..++..|+.|+++|.+|..+..      ..+..+...++.+...++.....+..++.++..+...+..++
T Consensus       310 ~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelE  389 (1486)
T PRK04863        310 VEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAE  389 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999876      445555566666666666666666666666666666666666


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           78 ADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE----------KAQALNNEKLAASSVQNLLEEKHKLINELENSR  147 (545)
Q Consensus        78 ~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee----------l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~  147 (545)
                      ..+..++..+......+..++..+..+...+..+..-          ...|..........+..++.++..+.+++..+.
T Consensus       390 eeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~le  469 (1486)
T PRK04863        390 EEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQ  469 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666655555444          223333334444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 042557          148 EEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIE---DLRIVLKATNEKYESMLDDAKHEIGLLTNII  224 (545)
Q Consensus       148 ~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie---~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~  224 (545)
                      ......++++..+....-.+  ....+..+.-.+-..+...+..+.   .++..|.+.+-+++.            ...+
T Consensus       470 a~leql~~~~~~l~~~~Gkv--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------q~~~  535 (1486)
T PRK04863        470 AAHSQFEQAYQLVRKIAGEV--SRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQ------------QQRA  535 (1486)
T ss_pred             HHHHHHHHHHHHHHHHcCCc--CHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH------------HHHH
Confidence            44444444433333222221  222333333333333334444333   366777777766551            2233


Q ss_pred             HHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHH
Q 042557          225 KEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEV---EAEVIYM  301 (545)
Q Consensus       225 E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~a---e~e~~ea  301 (545)
                      +++..++......--..+..|....-..+..+..+..+...+.+...       .++...++|...+.++   -+.-..+
T Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~qL~~~i~~l~~~ap~W~~a  608 (1486)
T PRK04863        536 ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRM-------ALRQQLEQLQARIQRLAARAPAWLAA  608 (1486)
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhChHHHhh
Confidence            34444443321111112333333333444444444444444444444       4555555555555433   3456678


Q ss_pred             HHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Q 042557          302 QETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAM  358 (545)
Q Consensus       302 ~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~  358 (545)
                      ++++.-++.++-.+-++-...-..+|.+....-+++.........+.-|...++.-+
T Consensus       609 ~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~  665 (1486)
T PRK04863        609 QDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLS  665 (1486)
T ss_pred             HHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            888888888888888888888888899888888888888888888888888877543

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.95  E-value=0.00011  Score=91.21  Aligned_cols=152  Identities=20%  Similarity=0.250  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          125 AASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNE  204 (545)
Q Consensus       125 lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~  204 (545)
                      +......|..-.+++..+++.+.-.++....+...|...+..+..-+.+.+.....++.+++....+...+...+.....
T Consensus      1398 ~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~ 1477 (1930)
T KOG0161|consen 1398 ANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKN 1477 (1930)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            33334444445566666667776667777777777777778888888889999999999999999999998888888888


Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          205 KYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDA  277 (545)
Q Consensus       205 k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~  277 (545)
                      .|+.+++ .-.++.+..+.+.+.+.++..+...-+++-.++.+..+.++.++..+|..+..+.+.+...|...
T Consensus      1478 ~lee~~e-~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~ 1549 (1930)
T KOG0161|consen 1478 ALEELLE-QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKK 1549 (1930)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            8888777 56788999999999999999999999999999999999999999999999987777666555443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.94  E-value=3.3e-05  Score=89.14  Aligned_cols=284  Identities=20%  Similarity=0.248  Sum_probs=209.0

Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557           43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE  122 (545)
Q Consensus        43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE  122 (545)
                      ..++.+...|.....++..++.++..+..+.......|+-++..|...+....-++.+|+.|+.+|+.....+......-
T Consensus       287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~  366 (775)
T PF10174_consen  287 SKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQI  366 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999888877666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHH
Q 042557          123 KLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLL---------SSQTEHETYEAQIE  193 (545)
Q Consensus       123 k~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~---------~~Q~Ele~~r~Eie  193 (545)
                      ..+..+...+..++..+...++.....+....+.++.|...|.+-...+...+.++.         .+...++.+..+.+
T Consensus       367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eke  446 (775)
T PF10174_consen  367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKE  446 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777788888888888887778888888887         66677777777777


Q ss_pred             HHHHHHHHH----HHHHHHhHHhHHHHHHHHHHHHHHHHhHhH---HHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHH
Q 042557          194 DLRIVLKAT----NEKYESMLDDAKHEIGLLTNIIKEAKDESK---ISKAEWEQKELHLVDCVKKSEEENSSLEKEINRL  266 (545)
Q Consensus       194 ~Lq~~L~~a----E~k~~~~l~ea~~e~~~lkk~~E~~~~E~e---~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l  266 (545)
                      +++..|...    +..+...++--..++..++-+++.+..++.   .++..+...-..+....-+..-++..+.-++...
T Consensus       447 r~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~  526 (775)
T PF10174_consen  447 RLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKK  526 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHh
Confidence            777776544    222223444444555555555555544432   2333444444444444445566666666666666


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHH
Q 042557          267 VNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQ  327 (545)
Q Consensus       267 ~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq  327 (545)
                      .+-....+++++.++.. .+++.-+..++.++......++-+++++-+|-..|.+.|++=-
T Consensus       527 rek~~kl~~ql~k~~~~-~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~  586 (775)
T PF10174_consen  527 REKHEKLEKQLEKLRAN-AELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKN  586 (775)
T ss_pred             hhHHHHHHHHHHHHHhC-HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666664443 4667777788888888888888888888888887776666533

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.91  E-value=0.00015  Score=83.81  Aligned_cols=103  Identities=25%  Similarity=0.372  Sum_probs=65.1

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----------HH------------HHHH---
Q 042557          247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEV-----------EA------------EVIY---  300 (545)
Q Consensus       247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~a-----------e~------------e~~e---  300 (545)
                      .-|...-++....+.++++|+.-|..+|.+-...-.+...|-..|+.+           ++            .+.+   
T Consensus       555 ~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~elleea~R  634 (775)
T PF10174_consen  555 QEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAELLEEALR  634 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhHHHHHHHh
Confidence            334455567777788999999999999999888877777777765221           10            0000   


Q ss_pred             ------HHHHHHH-------HHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHH
Q 042557          301 ------MQETLGQ-------ARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEE  349 (545)
Q Consensus       301 ------a~e~~~e-------a~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~E  349 (545)
                            +...+..       ....+..+.-.+.++.++|..+++|++.|+..=+..+....+
T Consensus       635 ee~~~t~e~~l~~s~q~~~~~~~~~~~~e~qleeL~~~l~k~~~Eld~l~~qL~ssq~~L~e  696 (775)
T PF10174_consen  635 EEVSITEERELAQSQQKLAQQEAQSSHLEKQLEELEAALEKLRQELDQLKAQLESSQQSLME  696 (775)
T ss_pred             hhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                  0001111       112233344578899999999999999988665555554433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.88  E-value=0.00015  Score=87.72  Aligned_cols=97  Identities=20%  Similarity=0.299  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 042557           20 LEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAK   99 (545)
Q Consensus        20 LE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqk   99 (545)
                      |..++.....-.......+..+...+..+...+.++...+..+..++..+...+..+...+..+...+.....++..+..
T Consensus       672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  751 (1163)
T COG1196         672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE  751 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333344444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 042557          100 TVESLKFELETVKEEKA  116 (545)
Q Consensus       100 elesLkseLe~~eeel~  116 (545)
                      .+..+..++..+++.+.
T Consensus       752 ~~~~~~~~~~~~~~~l~  768 (1163)
T COG1196         752 ELEELQERLEELEEELE  768 (1163)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.75  E-value=0.00018  Score=74.37  Aligned_cols=134  Identities=18%  Similarity=0.225  Sum_probs=82.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 042557           50 DKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKH-SMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASS  128 (545)
Q Consensus        50 ~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL-~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsse  128 (545)
                      ..|..+|...+.-=++|+.|+.+...|..+|..+.... .....--..+..+|..++..|..+..+...+.-....+..+
T Consensus         4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e   83 (312)
T PF00038_consen    4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE   83 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence            45666666677777777777777777777777666653 22333345577777777777777777766666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 042557          129 VQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQT  183 (545)
Q Consensus       129 Ie~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~  183 (545)
                      +..+..++.........+...+...++.+++...+.-.++..+..++..+..++.
T Consensus        84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~  138 (312)
T PF00038_consen   84 LEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ  138 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence            6666666666666666666666666666666666666666666666665555443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.75  E-value=0.00074  Score=75.09  Aligned_cols=47  Identities=23%  Similarity=0.225  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557          284 EAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI  330 (545)
Q Consensus       284 ~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~  330 (545)
                      +.+.|..|....+.+..++.--+.+..++..|..-+..+|..|..+.
T Consensus       412 lsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~  458 (546)
T PF07888_consen  412 LSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVA  458 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444445555556666676777777888888888888888887773

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK03918 chromosome segregation protein; Provisional

Probab=98.70  E-value=0.0019  Score=75.51  Aligned_cols=43  Identities=19%  Similarity=0.319  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHH
Q 042557          286 QLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQS  328 (545)
Q Consensus       286 ~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~  328 (545)
                      .++..+..+...+......++.+......|...+.+.+..+..
T Consensus       663 ~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~  705 (880)
T PRK03918        663 ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE  705 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444444444444444443333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.63  E-value=0.0024  Score=78.77  Aligned_cols=307  Identities=21%  Similarity=0.280  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHh-------hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 042557           14 KIRVEELEMQAEEAHKLKRSASE-------SLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERK   86 (545)
Q Consensus        14 kkql~sLE~QAeKA~ky~elk~l-------SL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~e   86 (545)
                      ..+++-|+.+++   .|..-+..       .+..+..++..++..|.....+..--.++.+.|...|       +-.+.+
T Consensus       635 e~~l~qLe~~le---~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~i-------e~~K~e  704 (1822)
T KOG4674|consen  635 EKRLRQLENELE---SYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNL-------ELTKEE  704 (1822)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence            445555555554   34333333       3444444444444444444444444444444444444       444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           87 HSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHE  166 (545)
Q Consensus        87 L~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E  166 (545)
                      +..+......++..|.+....+..+.+++..+......+..++.+|+.+..-+.+--.++....++.-.....|..-|..
T Consensus       705 ~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~  784 (1822)
T KOG4674|consen  705 VETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDN  784 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455556666666666666666666666666677777777777766666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHH
Q 042557          167 VSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLV  246 (545)
Q Consensus       167 ~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~  246 (545)
                      +.+-......-....+.   .+...+..|...|..+..+++.+-    .++..+...+......+-+..+.-...-..+.
T Consensus       785 lQt~~~~~e~s~~~~k~---~~e~~i~eL~~el~~lk~klq~~~----~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~  857 (1822)
T KOG4674|consen  785 LQTQKNELEESEMATKD---KCESRIKELERELQKLKKKLQEKS----SDLRELTNSLEKQLENAQNLVDELESELKSLL  857 (1822)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            65544444433333322   234566666666655555544333    33444555555555555555665555555555


Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHh
Q 042557          247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATK-----EEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLD  321 (545)
Q Consensus       247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~-----~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~d  321 (545)
                      ..++..+..+..+..++..|-..++-...+...+.     .+...+-+.|+....++......+.-+..+..++++...-
T Consensus       858 ~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s  937 (1822)
T KOG4674|consen  858 TSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSS  937 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666665555444     3556666778888888888999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHH
Q 042557          322 KETELQSVIQENEELR  337 (545)
Q Consensus       322 kE~eLq~i~~Ene~Lr  337 (545)
                      .|+.|..+...++++|
T Consensus       938 ~eqsl~~~ks~lde~~  953 (1822)
T KOG4674|consen  938 LEQSLESVKSELDETR  953 (1822)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999965

>TIGR00606 rad50 rad50

Probab=98.57  E-value=0.0066  Score=74.68  Aligned_cols=196  Identities=15%  Similarity=0.147  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHH
Q 042557          158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAE  237 (545)
Q Consensus       158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~  237 (545)
                      ..|...|.++..++.+....+..+..++..+..++..++..+.......+..+..+..++..+...+.++..-......-
T Consensus       884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y  963 (1311)
T TIGR00606       884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENK  963 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555556666666666665544433333221


Q ss_pred             HHh-hhhhHH---HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 042557          238 WEQ-KELHLV---DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEV--EAEVIYMQETLGQARAE  311 (545)
Q Consensus       238 ~~~-kE~~~~---~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~a--e~e~~ea~e~~~ea~~e  311 (545)
                      -.. ....+-   ..+..+...+..++.++..+...+......+..+......++++|...  ..++......+..+..+
T Consensus       964 ~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~ 1043 (1311)
T TIGR00606       964 IQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKE 1043 (1311)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            110 011111   122233566677777778888888888888888888888888888555  88888888888888887


Q ss_pred             HHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 042557          312 SMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLE  355 (545)
Q Consensus       312 ~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~  355 (545)
                      ++.+  .......++..+..++..|...-+.....+..|-.-+.
T Consensus      1044 ~~~~--~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~ 1085 (1311)
T TIGR00606      1044 MGQM--QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIK 1085 (1311)
T ss_pred             Hhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766  34666666777777777777666666555555544444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.56  E-value=0.0026  Score=78.57  Aligned_cols=81  Identities=15%  Similarity=0.263  Sum_probs=56.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 042557            3 ESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDE   82 (545)
Q Consensus         3 e~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE   82 (545)
                      ++|+.+|..+|.+-.+.|+......+.+.......+.-+...++.+...+..+...+..++..+..++..+..+...|..
T Consensus       804 e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~  883 (1822)
T KOG4674|consen  804 ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKS  883 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999888888888877777776766666666666555555555555555544444444444433


Q ss_pred             H
Q 042557           83 S   83 (545)
Q Consensus        83 ~   83 (545)
                      .
T Consensus       884 ~  884 (1822)
T KOG4674|consen  884 A  884 (1822)
T ss_pred             h
Confidence            3

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.56  E-value=0.00013  Score=73.25  Aligned_cols=213  Identities=19%  Similarity=0.243  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557          103 SLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQ  182 (545)
Q Consensus       103 sLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q  182 (545)
                      .+...+..+...+..+..+...+..++..|..++..+..+|+.+..++......++.+...+.+.....+.+..+....-
T Consensus        12 ~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~e   91 (237)
T PF00261_consen   12 EAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDE   91 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            33333333333333333344444444555555555555555555444444444445555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHH
Q 042557          183 TEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKE  262 (545)
Q Consensus       183 ~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e  262 (545)
                      ..++.+..++......+.+++.||..    +..-+..    ++.   +++.+    ..+--.+-.+|+.++.++..+.. 
T Consensus        92 eri~~lE~~l~ea~~~~ee~e~k~~E----~~rkl~~----~E~---~Le~a----EeR~e~~E~ki~eLE~el~~~~~-  155 (237)
T PF00261_consen   92 ERIEELEQQLKEAKRRAEEAERKYEE----VERKLKV----LEQ---ELERA----EERAEAAESKIKELEEELKSVGN-  155 (237)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHH----CHHHHHH----HHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHH---HHHHH----HHHHhhhchhHHHHHHHHHHHHH-
Confidence            56666667777777777777777662    2111111    222   22222    22222222234444444444444 


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHH
Q 042557          263 INRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELR  337 (545)
Q Consensus       263 ~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr  337 (545)
                            +|+..|....-...-...+...++.+...+.+|.-+++.|...+..|...+.++|.+|......+..++
T Consensus       156 ------~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~  224 (237)
T PF00261_consen  156 ------NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ  224 (237)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  444333333344444455555556666666666666666666666777777777777776666665543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=98.53  E-value=0.004  Score=70.15  Aligned_cols=328  Identities=16%  Similarity=0.169  Sum_probs=172.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH------
Q 042557            3 ESYARNLVEEWKIRVEELEMQAEEAHKLK-----RSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEM------   71 (545)
Q Consensus         3 e~RV~DLl~Evkkql~sLE~QAeKA~ky~-----elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~------   71 (545)
                      +|-|..+-.|.-.++-+||+.+..+-+-+     +.+++--.++..-   +++.|.+-...|+.|...-+.|-+      
T Consensus       397 ~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l---~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs  473 (961)
T KOG4673|consen  397 ESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAAL---LKDELAEKDEIINQLMAEGEKLSKKQLAQS  473 (961)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            34555566666667777776665544332     2222222222222   224555555555555544444333      


Q ss_pred             -HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           72 -TIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEE  150 (545)
Q Consensus        72 -ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~ee  150 (545)
                       .|..|.+++.+....+...-+.+..++.+.+.|+.-+...++--..+.+.-++...++..-...+..+...++.+..+.
T Consensus       474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~  553 (961)
T KOG4673|consen  474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQA  553 (961)
T ss_pred             HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence             4445555554443334444445566666666666666555444222333333333333333333222222222222222


Q ss_pred             HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042557          151 EKSKKAMESLASAL---------------HEVSVEAREAKEKLLSSQTE----HETYEAQIEDLRIVLKATNEKYESMLD  211 (545)
Q Consensus       151 Ekekka~EeLa~AL---------------~E~e~E~eeakekl~~~Q~E----le~~r~Eie~Lq~~L~~aE~k~~~~l~  211 (545)
                      -.+..+++++...|               ..+-..+..++..+......    =+.+|.++..|+..|.+||-|.+...-
T Consensus       554 ~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q  633 (961)
T KOG4673|consen  554 LAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQ  633 (961)
T ss_pred             HHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11111111111111               11111222222222222111    146799999999999999999997766


Q ss_pred             hHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHH----H---HHHHHHHHHHHHHhhhHHHH
Q 042557          212 DAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEI----N---RLVNLLKETEEDACATKEEE  284 (545)
Q Consensus       212 ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~----~---~l~e~l~~~E~~~~~~~~E~  284 (545)
                      +.-.-..-|-..+|.+..=+-...++|++-|..+...+--++-.+..+...-    .   .+.=+|-..+-.+..+++|+
T Consensus       634 ~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~  713 (961)
T KOG4673|consen  634 QVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQ  713 (961)
T ss_pred             hccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHH
Confidence            6544444556667777777777889999999998766665555444433322    1   11222333445556788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHH
Q 042557          285 AQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQEN  333 (545)
Q Consensus       285 ~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~En  333 (545)
                      ..|+..|...-+-+++.......+..+...|++...-.|.+.+-.....
T Consensus       714 ~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~  762 (961)
T KOG4673|consen  714 GQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH  762 (961)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888666666666666666666666777777666666665555443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.51  E-value=0.0022  Score=66.31  Aligned_cols=45  Identities=18%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHH
Q 042557          284 EAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQS  328 (545)
Q Consensus       284 ~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~  328 (545)
                      ...+...+...+.++..+...+...-.+...|-+.++.++.++.+
T Consensus       257 ~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIat  301 (312)
T PF00038_consen  257 REEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIAT  301 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            333444444445555555555544444555555555555555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK01156 chromosome segregation protein; Provisional

Probab=98.51  E-value=0.0066  Score=71.60  Aligned_cols=19  Identities=16%  Similarity=0.309  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 042557           10 VEEWKIRVEELEMQAEEAH   28 (545)
Q Consensus        10 l~Evkkql~sLE~QAeKA~   28 (545)
                      +..++..+..|+.++....
T Consensus       307 l~~l~~~l~~l~~~l~~~e  325 (895)
T PRK01156        307 IENKKQILSNIDAEINKYH  325 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444443333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.39  E-value=0.00084  Score=67.54  Aligned_cols=139  Identities=20%  Similarity=0.323  Sum_probs=66.9

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           40 AVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQAL  119 (545)
Q Consensus        40 l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~  119 (545)
                      .+...|......+..+..++..|+.++..++..+......|..+...|..+++........+..|.              
T Consensus        19 ~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE--------------   84 (237)
T PF00261_consen   19 EAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE--------------   84 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence            334455555555556666666666666666555555555555555555444444433333333333              


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557          120 NNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL  199 (545)
Q Consensus       120 ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L  199 (545)
                             .......+++..+...|..+....+.....+++....|.-++..+..+..++......+..+..++..+...|
T Consensus        85 -------~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l  157 (237)
T PF00261_consen   85 -------NREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL  157 (237)
T ss_dssp             -------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence                   3333333334444444444444444444444444444555555555555544444444444444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.35  E-value=0.00094  Score=74.30  Aligned_cols=230  Identities=19%  Similarity=0.220  Sum_probs=142.5

Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042557           42 MRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNN  121 (545)
Q Consensus        42 t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ek  121 (545)
                      -.++-.+...+.++....+.++..       +..+..++++++..+..+++.....+..+..+...|..++.+...++.+
T Consensus        91 e~El~~ar~~l~e~~~~ra~~e~e-------i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr  163 (546)
T KOG0977|consen   91 EAELATARKLLDETARERAKLEIE-------ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRR  163 (546)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHH
Confidence            334444444444555554444444       4444555555555555555555566666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 042557          122 EKLAASSVQNLLEEKHKLINELENSREEEEKSKK-----------AMESLASALHEVSVEAREAKEKLLSSQTEHETYEA  190 (545)
Q Consensus       122 Ek~lsseIe~L~eel~kl~~ELE~~~~eeEkekk-----------a~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~  190 (545)
                      .+.+.+++..|..+..++..+|..++.+++.+.-           .+++|.......+.++.+.+..+..--.  ...+.
T Consensus       164 ~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~  241 (546)
T KOG0977|consen  164 IKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNRE  241 (546)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchH
Confidence            6777777777777777777777777766555543           3344444444445555555544433221  22233


Q ss_pred             HHH-HHHHHHHHHHHHHHHhHHhHHHHHHHHH-HHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHH
Q 042557          191 QIE-DLRIVLKATNEKYESMLDDAKHEIGLLT-NIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVN  268 (545)
Q Consensus       191 Eie-~Lq~~L~~aE~k~~~~l~ea~~e~~~lk-k~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e  268 (545)
                      .+. .|+.++.+..+.|.......+.++...+ +++..+..-++..           ..|+-...+|+..++..+..|+.
T Consensus       242 ~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~-----------~~~~~~~rEEl~~~R~~i~~Lr~  310 (546)
T KOG0977|consen  242 YFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERA-----------NVEQNYAREELRRIRSRISGLRA  310 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccc-----------cchhHHHHHHHHHHHhcccchhh
Confidence            333 2888998888888877777777665433 3343322211111           22444588999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHH
Q 042557          269 LLKETEEDACATKEEEAQLRDSL  291 (545)
Q Consensus       269 ~l~~~E~~~~~~~~E~~~lr~~L  291 (545)
                      .+.+.|.+...+......|+.-|
T Consensus       311 klselE~~n~~L~~~I~dL~~ql  333 (546)
T KOG0977|consen  311 KLSELESRNSALEKRIEDLEYQL  333 (546)
T ss_pred             hhccccccChhHHHHHHHHHhhh
Confidence            99999999999998888888777

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.22  E-value=0.017  Score=68.26  Aligned_cols=78  Identities=18%  Similarity=0.302  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHH
Q 042557          264 NRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREA  341 (545)
Q Consensus       264 ~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea  341 (545)
                      ..+...+-..+....-|..+++.+...+..+..+.+.....+..-..+-..++..++..-..++++..++..|+..--
T Consensus       390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~  467 (1074)
T KOG0250|consen  390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKT  467 (1074)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            334444444455555555566666665556666666666666555555566666666677777777777777665443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.19  E-value=0.029  Score=65.11  Aligned_cols=223  Identities=24%  Similarity=0.230  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH----HH
Q 042557           97 MAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSK-----------KAMES----LA  161 (545)
Q Consensus        97 lqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkek-----------ka~Ee----La  161 (545)
                      +..++.++--.|+-..=++.-+.++-..++.++..+++++..+..+|+.++.+.+.--           +.++.    |.
T Consensus       302 ~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLK  381 (1243)
T KOG0971|consen  302 YKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLK  381 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHH
Confidence            3333333333333333334445677778888888888988888888888877653211           11122    23


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhh
Q 042557          162 SALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQK  241 (545)
Q Consensus       162 ~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~k  241 (545)
                      .+|--+-.-.-+.+.-.+..+.+++..+.|+..|+.    ..+++...++.|+.-|+-++..|+.-. =+|.-..-.+.+
T Consensus       382 dalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r----~kE~Lsr~~d~aEs~iadlkEQVDAAl-GAE~MV~qLtdk  456 (1243)
T KOG0971|consen  382 DALVRLRDLSASEKQDHQKLQKELEKKNSELEELRR----QKERLSRELDQAESTIADLKEQVDAAL-GAEEMVEQLTDK  456 (1243)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHHhh
Confidence            333333333334455556667777777777776553    446677777888888888888776521 123334456778


Q ss_pred             hhhHHHhhHhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 042557          242 ELHLVDCVKKSEEENSSLEKEI---NRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKES  318 (545)
Q Consensus       242 E~~~~~~iK~~eee~~~~~~e~---~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~  318 (545)
                      +.++-+.||.+++++..|.+-.   +.|.++-+..|.   -+++|...+....|.+...++.|.+.+-....-+.+..+-
T Consensus       457 nlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~---DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRel  533 (1243)
T KOG0971|consen  457 NLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELEL---DLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFREL  533 (1243)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            8899999999999998876533   456666555444   4789999999999999999999999887764444444444


Q ss_pred             HHhhHHHHH
Q 042557          319 FLDKETELQ  327 (545)
Q Consensus       319 l~dkE~eLq  327 (545)
                      ++.+-..||
T Consensus       534 va~Lqdqlq  542 (1243)
T KOG0971|consen  534 VAHLQDQLQ  542 (1243)
T ss_pred             HHHHHHHHH
Confidence            433333333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.16  E-value=0.034  Score=65.06  Aligned_cols=135  Identities=17%  Similarity=0.232  Sum_probs=91.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 042557            5 YARNLVEEWKIRVEELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADL   80 (545)
Q Consensus         5 RV~DLl~Evkkql~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~l   80 (545)
                      -|..++..|..++++|+..-+.+..|.++--    +...++-.++.       +++.++..|.......       -..-
T Consensus       188 kI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~-------E~~~~l~~le~~r~~~-------~e~s  253 (1200)
T KOG0964|consen  188 KINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELN-------EINGELERLEEDRSSA-------PEES  253 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHH-------HHHHHHHHHHHHHhcc-------chhh
Confidence            4778999999999999999999999998866    44444444444       3444444444443322       2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           81 DESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKS  153 (545)
Q Consensus        81 eE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEke  153 (545)
                      +.....+..++.++..+...+-+|.+.|..+.+++.++..++..+......|.-++..+..++..-.+.....
T Consensus       254 ~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~  326 (1200)
T KOG0964|consen  254 EQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLA  326 (1200)
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhH
Confidence            3344556667777777788888888888888888887777777777766666666666666666664444333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.16  E-value=0.039  Score=65.67  Aligned_cols=151  Identities=20%  Similarity=0.238  Sum_probs=84.1

Q ss_pred             HHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 042557          232 KISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEE-------EAQLRDSLKEVEAEVIYMQET  304 (545)
Q Consensus       232 e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E-------~~~lr~~Lk~ae~e~~ea~e~  304 (545)
                      +..++...++=.++..-|.+.+.++.-+-.++++++..+..+|.++..+..-       .+.|...|-.....+.+-+-.
T Consensus       464 ~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~  543 (1293)
T KOG0996|consen  464 DEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTE  543 (1293)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444555555555555555555555555555444433       333444444444445555555


Q ss_pred             HHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhcc--------------cc---ccC
Q 042557          305 LGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQ--------------TA---ENG  367 (545)
Q Consensus       305 ~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~~~~~--------------~~---~~~  367 (545)
                      +...+.....|+.-+.+++.+|..+..+-..|+.--.+.+-++.|++..+...+.+..              ++   --|
T Consensus       544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLG  623 (1293)
T KOG0996|consen  544 LDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLG  623 (1293)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccc
Confidence            5555666666666666677777777766666666667888888888876665443311              11   226


Q ss_pred             ccccccccccccchh
Q 042557          368 ELTDSEKDYDLLPKV  382 (545)
Q Consensus       368 ~~~~~~~~~~~~~~~  382 (545)
                      .|-..+.-||+--..
T Consensus       624 DLg~Id~kYDvAIsT  638 (1293)
T KOG0996|consen  624 DLGAIDEKYDVAIST  638 (1293)
T ss_pred             cccccchHHHHHHHH
Confidence            676678888654433

>PRK01156 chromosome segregation protein; Provisional

Probab=98.15  E-value=0.039  Score=65.24  Aligned_cols=57  Identities=16%  Similarity=0.203  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHH
Q 042557          297 EVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSL  353 (545)
Q Consensus       297 e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~l  353 (545)
                      .+..+......+......|...+..+++.+..+....+.++..=+...+.+.++..+
T Consensus       675 ~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~  731 (895)
T PRK01156        675 RINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKI  731 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444555555555555555555555555444443333444444444433

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=98.15  E-value=0.016  Score=65.10  Aligned_cols=202  Identities=19%  Similarity=0.223  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHHH
Q 042557          126 ASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAR--------EAKEKLLSSQTEHETYEAQIEDLRI  197 (545)
Q Consensus       126 sseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~e--------eakekl~~~Q~Ele~~r~Eie~Lq~  197 (545)
                      ..++.....+++-+..+|+.+..+..-.....+.|...|..+....+        .....+-.+-.++.++-.++.++++
T Consensus       227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~  306 (629)
T KOG0963|consen  227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA  306 (629)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33444555566667777777777766666666666666666554433        4456666677888888999999999


Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHH-HHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHH-HHHHH
Q 042557          198 VLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKA-EWEQKELHLVDCVKKSEEENSSLEKEINRLVNLL-KETEE  275 (545)
Q Consensus       198 ~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~-~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l-~~~E~  275 (545)
                      ++.....++...+-....+.......++.++..+....+ +-=.+|..+++.|.=.--+-..-+.++...+++| -.+++
T Consensus       307 S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr  386 (629)
T KOG0963|consen  307 SLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNR  386 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHh
Confidence            998888888877777677777777777777777666655 5556677777666655222223332444444444 43433


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557          276 DACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI  330 (545)
Q Consensus       276 ~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~  330 (545)
                         -+..|++.||-..-.+...++.+..+..++++.....++..++.|++|-.+.
T Consensus       387 ---~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~  438 (629)
T KOG0963|consen  387 ---KLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQ  438 (629)
T ss_pred             ---hhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcc
Confidence               5778999999999888889999999999999999999999999999887765

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.15  E-value=4.3e-07  Score=106.15  Aligned_cols=299  Identities=21%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           39 DAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQA  118 (545)
Q Consensus        39 ~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el  118 (545)
                      ..+..++.++...|..+...-......+..++.++..+...+++....+.........++.++..|...++..+..    
T Consensus       155 ~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~----  230 (859)
T PF01576_consen  155 SQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQ----  230 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            3334444444444444444444444455555555555555555555555554444445555555555444443333    


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 042557          119 LNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIV  198 (545)
Q Consensus       119 ~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~  198 (545)
                                +..+......+...|+.++..++.+.++...|...|..+..++..++..+..-......+..++..++.-
T Consensus       231 ----------~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~E  300 (859)
T PF01576_consen  231 ----------LSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAE  300 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------HHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhH
Confidence                      3333334444555666666667777777788888888888888888888888777777888888889999


Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557          199 LKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDAC  278 (545)
Q Consensus       199 L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~  278 (545)
                      |..+..||......=..+..-+++++.+...++...+...+.+-..+-+.-+++..++..+..+++.........+....
T Consensus       301 l~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr  380 (859)
T PF01576_consen  301 LEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQR  380 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999876666556677789999999999999999999999998888999999999999999888887777777777


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHh-------hHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q 042557          279 ATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLD-------KETELQSVIQENEELRAREADSVKKVEELS  351 (545)
Q Consensus       279 ~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~d-------kE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~  351 (545)
                      .+...+..++..+..+..+...+......+.+++..|+..+-+       .+.+-.++..|+++|...-..+.+.+.+|-
T Consensus       381 ~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLe  460 (859)
T PF01576_consen  381 KFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELE  460 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHH
Confidence            7777777777777665555555555555555555555544443       344444555555555555555555444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.14  E-value=0.044  Score=65.31  Aligned_cols=87  Identities=18%  Similarity=0.252  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhH
Q 042557          268 NLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKV  347 (545)
Q Consensus       268 e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i  347 (545)
                      ..+-.+...+..++..+.+.++.|-.....+...+..+..+..+...++....-+=..+..+.+..+++|.+...++..-
T Consensus       521 ~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~  600 (1293)
T KOG0996|consen  521 KKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRN  600 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            33333333334444444444444444444444444444444444444444444444444555566666666555555444


Q ss_pred             HHHHHHH
Q 042557          348 EELSSLL  354 (545)
Q Consensus       348 ~EL~~ll  354 (545)
                      +=|..|.
T Consensus       601 kVl~al~  607 (1293)
T KOG0996|consen  601 KVLDALM  607 (1293)
T ss_pred             HHHHHHH
Confidence            4444444

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.06  E-value=0.041  Score=62.23  Aligned_cols=322  Identities=12%  Similarity=0.145  Sum_probs=171.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHHHHH
Q 042557            5 YARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLH-----------DAESEIAALKEKVGLLEMTI   73 (545)
Q Consensus         5 RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~Le-----------eaesEI~~LqeKve~LE~ev   73 (545)
                      .++++|.+++.++..+-..+.......+-....+.-+...|..++..|-           .+...+..+......+..  
T Consensus       109 ~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~--  186 (569)
T PRK04778        109 EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVE--  186 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHH--
Confidence            4667777777777777777777766666666666666666666655552           233333333333333322  


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh-------------------hHHHHHHH--
Q 042557           74 GRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE----KAQALN-------------------NEKLAASS--  128 (545)
Q Consensus        74 ~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee----l~el~e-------------------kEk~lsse--  128 (545)
                      -.-..+..+++..+..+...+..+...+..+..-+..+...    +.++..                   .-..+..+  
T Consensus       187 l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~  266 (569)
T PRK04778        187 LTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQID  266 (569)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Confidence            11244555666666666666666655555554444444432    111111                   11111111  


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------
Q 042557          129 ----------VQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQ-------  191 (545)
Q Consensus       129 ----------Ie~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~E-------  191 (545)
                                +.........+...|+.+-+.++++..|..........+...+..++.....+..+++.++..       
T Consensus       267 ~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e  346 (569)
T PRK04778        267 ENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESE  346 (569)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh
Confidence                      222222444444555555555555555544444444444444555555555555555554444       


Q ss_pred             ---HHHHHHHHHHHHHHHHHhH----------HhHHHHHHHHHHHH---HHHHhHhHHHHHHHHhhhhhHHHhhHhhHHH
Q 042557          192 ---IEDLRIVLKATNEKYESML----------DDAKHEIGLLTNII---KEAKDESKISKAEWEQKELHLVDCVKKSEEE  255 (545)
Q Consensus       192 ---ie~Lq~~L~~aE~k~~~~l----------~ea~~e~~~lkk~~---E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee  255 (545)
                         +..+...|...+..+....          .+...+...+.+.+   +....++..........|..+-+.+..+...
T Consensus       347 ~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~  426 (569)
T PRK04778        347 LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK  426 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3334444444444444221          12222222222222   2223334444445566666666666666666


Q ss_pred             HHHHHHHH---------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHH
Q 042557          256 NSSLEKEI---------NRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETEL  326 (545)
Q Consensus       256 ~~~~~~e~---------~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eL  326 (545)
                      +..++..+         +..+..+..+..++..+......-.-+|..+..++.++..++..+..+...|.++..-.|..+
T Consensus       427 L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~I  506 (569)
T PRK04778        427 LHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLI  506 (569)
T ss_pred             HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666555         445666666666666666666555555566777888999999999888888888888888777


Q ss_pred             HH
Q 042557          327 QS  328 (545)
Q Consensus       327 q~  328 (545)
                      |.
T Consensus       507 qy  508 (569)
T PRK04778        507 QY  508 (569)
T ss_pred             HH
Confidence            76

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.06  E-value=0.041  Score=62.16  Aligned_cols=191  Identities=21%  Similarity=0.285  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHhHHHHHHHHHHHHHHHHh
Q 042557          160 LASALHEVSVEAREAKEKL-----LSSQTEHETYEAQIEDLRIVL-----KATNEKYESMLDDAKHEIGLLTNIIKEAKD  229 (545)
Q Consensus       160 La~AL~E~e~E~eeakekl-----~~~Q~Ele~~r~Eie~Lq~~L-----~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~  229 (545)
                      +=..|.++....+++...-     .....++..++.++......|     ..++.+    ++.-...|+.++..++.   
T Consensus       228 ~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~----~~~i~~~Id~Lyd~lek---  300 (569)
T PRK04778        228 LPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEK----NEEIQERIDQLYDILER---  300 (569)
T ss_pred             hhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHH----HHHHHHHHHHHHHHHHH---
Confidence            3345555665555554321     223344444444444433332     222222    33444556666655554   


Q ss_pred             HhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          230 ESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEED---ACATKEEEAQLRDSLKEVEAEVIYMQETLG  306 (545)
Q Consensus       230 E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~---~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~  306 (545)
                      |..--. .....-..+.+.+....+.+..+..++++|..++...+.+   ...+..+...+...++.....++.......
T Consensus       301 E~~A~~-~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ys  379 (569)
T PRK04778        301 EVKARK-YVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYS  379 (569)
T ss_pred             HHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            222111 2222233456677888889999999999999986654443   335556677777777777777777777788


Q ss_pred             HHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Q 042557          307 QARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAM  358 (545)
Q Consensus       307 ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~  358 (545)
                      .+......|...+...+.+...+......||..|..|+.++..+...+....
T Consensus       380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik  431 (569)
T PRK04778        380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK  431 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888899999999999999999999999999999999888654

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.03  E-value=0.015  Score=68.14  Aligned_cols=240  Identities=22%  Similarity=0.267  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          128 SVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE  207 (545)
Q Consensus       128 eIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~  207 (545)
                      ....+..++.-..++|..+..+.+...  +-.+..++..+..++.+.+.++...+.-+-.....+..+...++++...-+
T Consensus       709 kf~~l~~ql~l~~~~l~l~~~r~~~~e--~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re  786 (1174)
T KOG0933|consen  709 KFRDLKQQLELKLHELALLEKRLEQNE--FHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRE  786 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCh--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH
Confidence            344555555556666665555543322  233556666666777777777777766777777788888888888887777


Q ss_pred             HhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 042557          208 SMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQL  287 (545)
Q Consensus       208 ~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~l  287 (545)
                      --|.+++.+|.+++.+++.       +...|..++.++.    .+..+...+..++.-+.-++...+..+..+..++..|
T Consensus       787 ~rlkdl~keik~~k~~~e~-------~~~~~ek~~~e~e----~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l  855 (1174)
T KOG0933|consen  787 RRLKDLEKEIKTAKQRAEE-------SSKELEKRENEYE----RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNL  855 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888877776       7777777776653    3555666666666666666666666777777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHH----HhhHHHHHHhHHHHHHHHHHHHhhccc
Q 042557          288 RDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEEL----RAREADSVKKVEELSSLLEEAMAKKQT  363 (545)
Q Consensus       288 r~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~L----r~~Ea~a~~~i~EL~~ll~ea~~~~~~  363 (545)
                      +.++..++.++..+...+.+       .++.+.+..+++..+...-+-+    ...+-.-++...|+.++=.++....  
T Consensus       856 ~~kv~~~~~~~~~~~~el~~-------~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~--  926 (1174)
T KOG0933|consen  856 EAKVDKVEKDVKKAQAELKD-------QKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANAR--  926 (1174)
T ss_pred             HHHHHhHHhHHHHHHHHHHH-------HHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHH--
Confidence            77777776666665555544       4555555555555555444442    2233344555666666655543321  


Q ss_pred             cccCccccccccccccc-hhhhhccccCCC
Q 042557          364 AENGELTDSEKDYDLLP-KVVEFSEENGHA  392 (545)
Q Consensus       364 ~~~~~~~~~~~~~~~~~-~~~~~~~~n~~~  392 (545)
                         ..+....+.|.++| ...+|...|+.-
T Consensus       927 ---k~v~~l~~k~~wi~~ek~~fgk~gt~y  953 (1174)
T KOG0933|consen  927 ---KEVEKLLKKHEWIGDEKRLFGKKGTDY  953 (1174)
T ss_pred             ---HHHHHHHHhccchhHHHHhhcCCCCcc
Confidence               01122267777777 666777776544

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.98  E-value=0.028  Score=62.90  Aligned_cols=152  Identities=18%  Similarity=0.245  Sum_probs=112.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 042557           47 GNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNET-SEMAKTVESLKFELETVKEEKAQALNNEKLA  125 (545)
Q Consensus        47 ~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl-~slqkelesLkseLe~~eeel~el~ekEk~l  125 (545)
                      .-+..|..+|...+.-=++|+.|+.+...|..+|+.++..+..-.-.+ .-+..++-.++.-|+.....       ...+
T Consensus        39 rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~-------ra~~  111 (546)
T KOG0977|consen   39 REKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARE-------RAKL  111 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHH-------HHHH
Confidence            446778889999999999999999999999999999987776543222 23455555555444443333       3444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          126 ASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK  205 (545)
Q Consensus       126 sseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k  205 (545)
                      .-+|..|..++..+...++.+.......+....++...|.+++++..-++.+...+..++..++.+..+|...|..+...
T Consensus       112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~  191 (546)
T KOG0977|consen  112 EIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ  191 (546)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            55566666666666666666666666667777788889999999999999999999999999999999998888766543

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.95  E-value=0.059  Score=62.68  Aligned_cols=152  Identities=18%  Similarity=0.210  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHh
Q 042557          170 EAREAKEKLLSSQTEHETYEAQIED------------------LRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDES  231 (545)
Q Consensus       170 E~eeakekl~~~Q~Ele~~r~Eie~------------------Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~  231 (545)
                      +++-+++++..+..+++-++.|+++                  -...|++|=.|+|-..-.++.++..+-+-+|...+|.
T Consensus       333 eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~  412 (1243)
T KOG0971|consen  333 EVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSEL  412 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHH
Confidence            3444455555555555555555544                  5677888889999888899999999999988877776


Q ss_pred             HHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          232 KISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAE  311 (545)
Q Consensus       232 e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e  311 (545)
                      ..-..--..    |...+-.++-.+..++.+++.   . .-||.++..+.+-|=.|-+.++.++.++++..    .+.--
T Consensus       413 ~eL~r~kE~----Lsr~~d~aEs~iadlkEQVDA---A-lGAE~MV~qLtdknlnlEekVklLeetv~dlE----alee~  480 (1243)
T KOG0971|consen  413 EELRRQKER----LSRELDQAESTIADLKEQVDA---A-LGAEEMVEQLTDKNLNLEEKVKLLEETVGDLE----ALEEM  480 (1243)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---h-hcHHHHHHHHHhhccCHHHHHHHHHHHHHHHH----HHHHH
Confidence            654331111    111122244444444444432   1 23788888888889999999999888887753    23334


Q ss_pred             HHhHHHhHHhhHHHHHHHHHHHHHH
Q 042557          312 SMKLKESFLDKETELQSVIQENEEL  336 (545)
Q Consensus       312 ~~~Lk~~l~dkE~eLq~i~~Ene~L  336 (545)
                      +-+|.++-...|.+|   +.|+|.+
T Consensus       481 ~EQL~Esn~ele~DL---reEld~~  502 (1243)
T KOG0971|consen  481 NEQLQESNRELELDL---REELDMA  502 (1243)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHH
Confidence            445555555555443   3444443

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.91  E-value=0.076  Score=60.01  Aligned_cols=343  Identities=20%  Similarity=0.280  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHHHHH--------HHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557            8 NLVEEWKIRVEELE--------MQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD   79 (545)
Q Consensus         8 DLl~Evkkql~sLE--------~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~   79 (545)
                      ..+..|+++...+-        .++-.|+.|  .....+..+...+..+...+..+...+..+...+..|...-..-...
T Consensus        60 ~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~--~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~  137 (560)
T PF06160_consen   60 EKFEEWRQKWDEIVTKQLPEIEEQLFEAEEY--ADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREE  137 (560)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666554444        333333333  11144444555555555555555555555555555544433333344


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           80 LDESERKHSMAKNETSE----MAKTVESLKFELETVKEEKAQALN-----NEKLAASSVQNLLEEKHKLINELENSREEE  150 (545)
Q Consensus        80 leE~k~eL~~~ekEl~s----lqkelesLkseLe~~eeel~el~e-----kEk~lsseIe~L~eel~kl~~ELE~~~~ee  150 (545)
                      +..++..+..+.+.+-.    +-..+..|...|..++.......+     ..-.+...+..+...+..+..-++.+=.-.
T Consensus       138 i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~  217 (560)
T PF06160_consen  138 IEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLY  217 (560)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            44444333333333322    222223333333333333111100     113333444444444444444444443333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHhHHHHHHHHHHHH
Q 042557          151 EKSKKAMESLASALHEVSVEAREAKEK---L--LSSQTEHETYEAQIEDLRIVLKATNE-KYESMLDDAKHEIGLLTNII  224 (545)
Q Consensus       151 Ekekka~EeLa~AL~E~e~E~eeakek---l--~~~Q~Ele~~r~Eie~Lq~~L~~aE~-k~~~~l~ea~~e~~~lkk~~  224 (545)
                      ....   ..+-..|.++....+++...   +  ...-.++..++..+..+...|...+. .-+..++.....|+.++..+
T Consensus       218 ~~l~---~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~l  294 (560)
T PF06160_consen  218 KELQ---KEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDIL  294 (560)
T ss_pred             HHHH---HHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333   33445555555555554443   1  11222333334444443333322110 11122444555666666666


Q ss_pred             HHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHH
Q 042557          225 KEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACA---TKEEEAQLRDSLKEVEAEVIYM  301 (545)
Q Consensus       225 E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~---~~~E~~~lr~~Lk~ae~e~~ea  301 (545)
                      ++   |.. +...-...-..+.+.|.........+..+++++..++.....+...   +......+...+......+..-
T Consensus       295 e~---E~~-Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~  370 (560)
T PF06160_consen  295 EK---EVE-AKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQ  370 (560)
T ss_pred             HH---HHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            55   222 1222223344566677888888889999999999988876655433   3333444444444445555555


Q ss_pred             HHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHh
Q 042557          302 QETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMA  359 (545)
Q Consensus       302 ~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~~  359 (545)
                      .-.-..+......+...+...+.....+......||.-|.+|+.++..+...+.+..-
T Consensus       371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR  428 (560)
T PF06160_consen  371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR  428 (560)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555666667777777777777777778888999999999999999999997744

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.74  E-value=0.14  Score=58.36  Aligned_cols=186  Identities=17%  Similarity=0.250  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Q 042557           53 HDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE---KLAASSV  129 (545)
Q Consensus        53 eeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE---k~lsseI  129 (545)
                      .....++..|+.++..+...+..+...+......+.++..+..........+..++.-.+.-..-+.+.+   .+|...+
T Consensus       324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v  403 (594)
T PF05667_consen  324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV  403 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4555666666666666666666666666666666666666666666666666555553333322222222   2223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557          130 QNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESM  209 (545)
Q Consensus       130 e~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~  209 (545)
                      ..-...+..+...-+       ..+   --|...+..+......-......+..++..++.++..+...+..-+..|.  
T Consensus       404 ~~s~~rl~~L~~qWe-------~~R---~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~--  471 (594)
T PF05667_consen  404 EASEQRLVELAQQWE-------KHR---APLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYK--  471 (594)
T ss_pred             HHHHHHHHHHHHHHH-------HHH---hHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            332223333333222       222   12222333333333333333444445555666666666655555454444  


Q ss_pred             HHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHH
Q 042557          210 LDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEK  261 (545)
Q Consensus       210 l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~  261 (545)
                               .|...|+++-..  .....++++=.++|+.|++..+++...-.
T Consensus       472 ---------qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~  512 (594)
T PF05667_consen  472 ---------QLVKELEKLPKD--VNRSAYTRRILEIVKNIRKQKEEIEKILS  512 (594)
T ss_pred             ---------HHHHHHHhCCCC--CCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                     344445544444  46679999999999999999998865433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.70  E-value=0.077  Score=61.47  Aligned_cols=254  Identities=19%  Similarity=0.252  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557          103 SLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQ  182 (545)
Q Consensus       103 sLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q  182 (545)
                      .|..+++.++.++...-..|..+..+|..++.-=..+..+|..+       ++..|.|+..|..+......-+.-+..+.
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~ql-------r~ene~Lq~Kl~~L~~aRq~DKq~l~~LE  494 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQL-------RQENEQLQNKLQNLVQARQQDKQSLQQLE  494 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555455555666666666655444445554444       44445555666666655555555444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHH
Q 042557          183 TEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKE  262 (545)
Q Consensus       183 ~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e  262 (545)
                      ..|..-+..--.+...| .+|.|-+.. .+     .+....+         +.+.|+.-|+.     -........|..|
T Consensus       495 krL~eE~~~R~~lEkQL-~eErk~r~~-ee-----~~aar~~---------~~~~~~r~e~~-----e~~r~r~~~lE~E  553 (697)
T PF09726_consen  495 KRLAEERRQRASLEKQL-QEERKARKE-EE-----EKAARAL---------AQAQATRQECA-----ESCRQRRRQLESE  553 (697)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhH-HH-----Hhhhhcc---------ccchhccchhH-----HHHHHHHHHHHHH
Confidence            33333332222233333 222221100 00     0000000         11123332332     1233444556677


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH-------HhhHHHHHHHHHHHHH
Q 042557          263 INRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESF-------LDKETELQSVIQENEE  335 (545)
Q Consensus       263 ~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l-------~dkE~eLq~i~~Ene~  335 (545)
                      +.+|+..|+.+|.++..+..+..+||..-+..+.+...+-.+|.-++..|..|-.+|       +|+=.+|-....++|.
T Consensus       554 ~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei  633 (697)
T PF09726_consen  554 LKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEI  633 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777778888888888888888877545566677777777777777777776665       4555667777777776


Q ss_pred             HHhhHHHHHHhHHHHHHHHHHHHhhcccccc-Cccccccccccccchhhhhc
Q 042557          336 LRAREADSVKKVEELSSLLEEAMAKKQTAEN-GELTDSEKDYDLLPKVVEFS  386 (545)
Q Consensus       336 Lr~~Ea~a~~~i~EL~~ll~ea~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  386 (545)
                      +...=-.=-+-|.||+.=+++.++==+...- +.++.+.|.|.  ++++..+
T Consensus       634 ~~~~~~~~d~ei~~lk~ki~~~~av~p~~~~~~~~~~~~~~~~--~~~~~~~  683 (697)
T PF09726_consen  634 AQGQLRKKDKEIEELKAKIAQLLAVMPSDSYCSAITPPTPHYS--SKFLNSS  683 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCccch--hhhccCC
Confidence            3222222234588888877777764322111 34455566665  4444433

; GO: 0016021 integral to membrane

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.67  E-value=0.25  Score=58.86  Aligned_cols=54  Identities=19%  Similarity=0.239  Sum_probs=32.7

Q ss_pred             HHHHHHHH---HHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHH
Q 042557          215 HEIGLLTN---IIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVN  268 (545)
Q Consensus       215 ~e~~~lkk---~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e  268 (545)
                      .++.++++   .+++...+++..+++...+...+...|...+-.+...+.+|..|..
T Consensus       668 ~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n  724 (1074)
T KOG0250|consen  668 REASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN  724 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44555555   4555556666666666666666666666666666666666665555

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.60  E-value=0.2  Score=55.83  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 042557          159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIV  198 (545)
Q Consensus       159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~  198 (545)
                      .+...+.++...+...+..+.........++.+++.|...
T Consensus       334 ~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~  373 (562)
T PHA02562        334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE  373 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344444444444444444444444444444444444444

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.60  E-value=0.1  Score=60.39  Aligned_cols=64  Identities=17%  Similarity=0.296  Sum_probs=38.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 042557          279 ATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEE  356 (545)
Q Consensus       279 ~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~e  356 (545)
                      ++++.+..|-..|..==-=-.++=.++++++-+.--+...+..+|.++--|.+              +|.+|-.++..
T Consensus       598 amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~--------------ki~~~~av~p~  661 (697)
T PF09726_consen  598 AMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKA--------------KIAQLLAVMPS  661 (697)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhcCCc
Confidence            66666766666662110001134456777777777777888888877654432              46777777766

; GO: 0016021 integral to membrane

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.59  E-value=0.097  Score=58.24  Aligned_cols=94  Identities=14%  Similarity=0.302  Sum_probs=55.0

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHH
Q 042557          249 VKKSEEENSSLEKEINRLVNLLK---ETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETE  325 (545)
Q Consensus       249 iK~~eee~~~~~~e~~~l~e~l~---~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~e  325 (545)
                      +-...+.+..++.++..+...+.   ...++...+.....+++..+......+.........++.+...|.....+.+.+
T Consensus       301 ~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~  380 (562)
T PHA02562        301 ITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEE  380 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Confidence            33344455555555544444443   444455556666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHhhHHH
Q 042557          326 LQSVIQENEELRAREAD  342 (545)
Q Consensus       326 Lq~i~~Ene~Lr~~Ea~  342 (545)
                      |..+..+++.++..-+.
T Consensus       381 l~~l~~~l~~~~~~~~~  397 (562)
T PHA02562        381 LAKLQDELDKIVKTKSE  397 (562)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666665544333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.58  E-value=0.45  Score=59.51  Aligned_cols=59  Identities=14%  Similarity=0.141  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 042557          294 VEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSS  352 (545)
Q Consensus       294 ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~  352 (545)
                      ++....+....++.+......+.+.....-..++.+.+.+..|...--+=.....-|.+
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~  614 (1486)
T PRK04863        556 LEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALAR  614 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHH
Confidence            34444444555555555555555555566666666666666655544444444444444

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.56  E-value=0.37  Score=58.00  Aligned_cols=79  Identities=23%  Similarity=0.216  Sum_probs=35.5

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHhHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 042557          272 ETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKL-------KESFLDKETELQSVIQENEELRAREADSV  344 (545)
Q Consensus       272 ~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~L-------k~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~  344 (545)
                      -++.-+.-+.++.+-|+.-+++.....+...-....+..+..+|       .+...-..++|.+-.++.+. +.+|....
T Consensus       718 k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t-~~~Ekq~~  796 (1317)
T KOG0612|consen  718 KAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT-KMLEKQLK  796 (1317)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc-HHHHHHHH
Confidence            34444444555555555555544433333333333333333332       23333344444533333333 56666666


Q ss_pred             HhHHHHH
Q 042557          345 KKVEELS  351 (545)
Q Consensus       345 ~~i~EL~  351 (545)
                      ..+.+|.
T Consensus       797 ~~~~~l~  803 (1317)
T KOG0612|consen  797 KLLDELA  803 (1317)
T ss_pred             HHHHHHH
Confidence            5555554

>PRK11637 AmiB activator; Provisional

Probab=97.54  E-value=0.2  Score=54.51  Aligned_cols=50  Identities=16%  Similarity=0.140  Sum_probs=20.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 042557          179 LSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAK  228 (545)
Q Consensus       179 ~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~  228 (545)
                      ...+.+|+..+.+...+...|..-...++..+.+-..+...+...+..+.
T Consensus       204 ~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~  253 (428)
T PRK11637        204 QAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE  253 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344443334444433333334333333344444444444443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.36  E-value=0.6  Score=55.70  Aligned_cols=82  Identities=16%  Similarity=0.139  Sum_probs=46.6

Q ss_pred             HHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          226 EAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETL  305 (545)
Q Consensus       226 ~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~  305 (545)
                      +...--..+++....+-.++...++.....+..+...++.|...+...++-...+..+...|+.-.-.+..+..+++..+
T Consensus       388 ~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL  467 (1141)
T KOG0018|consen  388 RNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEEL  467 (1141)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHH
Confidence            33334445666777777777777777777777777777777776665555544444444444444444444444444433


Q ss_pred             HH
Q 042557          306 GQ  307 (545)
Q Consensus       306 ~e  307 (545)
                      ..
T Consensus       468 ~~  469 (1141)
T KOG0018|consen  468 VE  469 (1141)
T ss_pred             HH
Confidence            33

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.31  E-value=0.46  Score=53.37  Aligned_cols=285  Identities=16%  Similarity=0.139  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHH
Q 042557           65 KVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNL---LEEKHKLIN  141 (545)
Q Consensus        65 Kve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L---~eel~kl~~  141 (545)
                      +++.+....++++.|+.....-+.++..-...+...+..+..+|+.+++++.-+......|.-+|..-   ..+.++..+
T Consensus       260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~  339 (581)
T KOG0995|consen  260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNL  339 (581)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            33344444455555555555555555555566666666666666666666554444444444333321   113444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhHHHHHHHH
Q 042557          142 ELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIV-LKATNEKYESMLDDAKHEIGLL  220 (545)
Q Consensus       142 ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~-L~~aE~k~~~~l~ea~~e~~~l  220 (545)
                      |...+...+.+...+.+.|...+.+...+++   ..+...+.-+-++..-+.++... +..+-- ...--..+-.....+
T Consensus       340 Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~---~~f~~le~~~~~~~~l~~~i~l~~~~~~~n-~~~~pe~~~~~~~d~  415 (581)
T KOG0995|consen  340 ERNKLKRELNKIQSELDRLSKEVWELKLEIE---DFFKELEKKFIDLNSLIRRIKLGIAENSKN-LERNPERAATNGVDL  415 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCcCCccCccccccc
Confidence            4444444444445555555554444433322   23333333444444444444444 111111 000111111112222


Q ss_pred             HHHHHHHHhHh----HHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557          221 TNIIKEAKDES----KISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA  296 (545)
Q Consensus       221 kk~~E~~~~E~----e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~  296 (545)
                      +..|.-...++    ...+......-..++..+....--+.+.+..+-.+...+..++.++..++.+.+++.      ..
T Consensus       416 k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~------~k  489 (581)
T KOG0995|consen  416 KSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEW------KK  489 (581)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence            32222222221    111111111122222222222222222333333333333333333333333333222      22


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhH-HHHHHHHHHHHh
Q 042557          297 EVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKV-EELSSLLEEAMA  359 (545)
Q Consensus       297 e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i-~EL~~ll~ea~~  359 (545)
                      ...++..-.+.+...+..+.-.+.+-++-++++.-+++.+-..=..-+.++ ..|-++++.++.
T Consensus       490 ~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~  553 (581)
T KOG0995|consen  490 CRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISD  553 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233444444555677778888888999999999999998665555555555 899999998766

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.30  E-value=0.72  Score=55.38  Aligned_cols=217  Identities=19%  Similarity=0.201  Sum_probs=99.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 042557            6 ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESER   85 (545)
Q Consensus         6 V~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~   85 (545)
                      +.|.-..+...+...+.=+.....-+...+.-...+..-|+..+.....++.-+..|+.=+.++..-+..-.++.+.++.
T Consensus      1417 A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~ 1496 (1758)
T KOG0994|consen 1417 AGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEE 1496 (1758)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            33443344333333333333333333333344555666666666666666666666666665555545455555554432


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           86 KHSM-AKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASAL  164 (545)
Q Consensus        86 eL~~-~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL  164 (545)
                      --.. +.-++..--..|..|..+|...-..+.    +-..+-..-.......+.|..+-..++..-+.+++.+++...+|
T Consensus      1497 vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~----nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL 1572 (1758)
T KOG0994|consen 1497 VAEEVLALELPLTPEQIQQLTGEIQERVASLP----NVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEAL 1572 (1758)
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc----cHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            2221 111122222233333333332222210    00111111122222334444555555555556666666666666


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhH
Q 042557          165 HEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDE  230 (545)
Q Consensus       165 ~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E  230 (545)
                      .++....-.+..-+...-..+..++.-+...+.....||....    .|...+.-|-..|+.++..
T Consensus      1573 ~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~----~a~q~~~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1573 EEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLAT----SATQQLGELETRMEELKHK 1634 (1758)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            6655555555544444444555555555555555555555533    3344444444445444433

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=97.27  E-value=0.31  Score=57.04  Aligned_cols=243  Identities=21%  Similarity=0.226  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HhhHHHHHHHHHHHHHHHHHHH
Q 042557           66 VGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQ----A-LNNEKLAASSVQNLLEEKHKLI  140 (545)
Q Consensus        66 ve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~e----l-~ekEk~lsseIe~L~eel~kl~  140 (545)
                      ++..+.++..++..|+.+.+.-...+..+..+-..|-+....|+.++++..+    + ..+-..+...-..|..++-.+.
T Consensus        19 wekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~   98 (769)
T PF05911_consen   19 WEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELS   98 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3445566777777777777777777777888888888888888888877321    1 1111222222223444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 042557          141 NELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLL  220 (545)
Q Consensus       141 ~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~l  220 (545)
                      +.|..+..+-....+++.+-...|.++......+...+..++..|+.+..+...|+                  |++..+
T Consensus        99 ~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lk------------------ye~~~~  160 (769)
T PF05911_consen   99 KRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLK------------------YELHVL  160 (769)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Confidence            44444443333333333333333333333333334434444444444444333333                  333444


Q ss_pred             HHHHHHHHhHhH---HHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHH-------
Q 042557          221 TNIIKEAKDESK---ISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLV---NLLKETEEDACATKEEEAQL-------  287 (545)
Q Consensus       221 kk~~E~~~~E~e---~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~---e~l~~~E~~~~~~~~E~~~l-------  287 (545)
                      .+-|+.-..|.+   .+.+..+..-.+-|+-|.+++.|...|+.-+-+=+   +.+.       -++.|.+.|       
T Consensus       161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a-------~mk~ev~~~~~~~~~~  233 (769)
T PF05911_consen  161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALA-------QMKNEVESLGRDSGEN  233 (769)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHH-------HhHHHHHHhccccccc
Confidence            444443333333   24457777788888888889988877776552100   1111       334555554       


Q ss_pred             HH----------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHH
Q 042557          288 RD----------------SLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQEN  333 (545)
Q Consensus       288 r~----------------~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~En  333 (545)
                      |.                .......+....-+++..+.-+|--||+.|..+.++||+.+-=|
T Consensus       234 r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~  295 (769)
T PF05911_consen  234 RRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMY  295 (769)
T ss_pred             cCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11                11233556677888999999999999999999999999976544

The function of this family is unknown.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.19  E-value=0.87  Score=54.11  Aligned_cols=109  Identities=16%  Similarity=0.159  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          126 ASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK  205 (545)
Q Consensus       126 sseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k  205 (545)
                      ...+.+++.+++.+.+.++......++....++-|.....+++.+.+-.+..+..+...+..+..++..|.+.+..++.-
T Consensus       786 e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~  865 (1174)
T KOG0933|consen  786 ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD  865 (1174)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence            34556666777777777777777777777778888888888888888888888888888888888888888888776655


Q ss_pred             HHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 042557          206 YESMLDDAKHEIGLLTNIIKEAKDESKISKAEW  238 (545)
Q Consensus       206 ~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~  238 (545)
                      ..    .+..++.-+++.+-.+-.++......|
T Consensus       866 ~~----~~~~el~~~k~k~~~~dt~i~~~~~~~  894 (1174)
T KOG0933|consen  866 VK----KAQAELKDQKAKQRDIDTEISGLLTSQ  894 (1174)
T ss_pred             HH----HHHHHHHHHHHHHHhhhHHHhhhhhHH
Confidence            44    333444444444433333343333333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.18  E-value=1.1  Score=55.14  Aligned_cols=47  Identities=26%  Similarity=0.297  Sum_probs=30.4

Q ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 042557           36 ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDE   82 (545)
Q Consensus        36 lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE   82 (545)
                      .++..-..++...+..++.+...+..|..+...++..+..+...+..
T Consensus       345 ~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~  391 (1201)
T PF12128_consen  345 EQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEE  391 (1201)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555556666667777777777777777777776666555555443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.15  E-value=0.15  Score=51.81  Aligned_cols=116  Identities=17%  Similarity=0.278  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 042557           54 DAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLL  133 (545)
Q Consensus        54 eaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~  133 (545)
                      .+-.++..+..++......+...++.++.++..+...+.++..+...+..+.++|..+...       .+.+...+...+
T Consensus        14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r-------~~~~e~kl~~v~   86 (239)
T COG1579          14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER-------IKRAEEKLSAVK   86 (239)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhccc
Confidence            3334444444444444444444444444444444444444444444444444444443333       222222222222


Q ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          134 E--EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKE  176 (545)
Q Consensus       134 e--el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeake  176 (545)
                      .  +++.|.+++..+..+.......+.++...++.++.+....+.
T Consensus        87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~  131 (239)
T COG1579          87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE  131 (239)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  455555555555554444444444444444444444333333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.14  E-value=0.31  Score=48.05  Aligned_cols=51  Identities=29%  Similarity=0.323  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          219 LLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEED  276 (545)
Q Consensus       219 ~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~  276 (545)
                      .|.+.++-...-+...+..++.+-..       +..++..++.++..|...+...+++
T Consensus       143 ~Lek~leL~~k~~~rql~~e~kK~~~-------~~~~~~~l~~ei~~L~~klkEKer~  193 (194)
T PF15619_consen  143 ELEKQLELENKSFRRQLASEKKKHKE-------AQEEVKSLQEEIQRLNQKLKEKERE  193 (194)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33444444344444466667776666       5666777777777777777776664

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.09  E-value=0.21  Score=50.78  Aligned_cols=52  Identities=29%  Similarity=0.268  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          124 LAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAK  175 (545)
Q Consensus       124 ~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeak  175 (545)
                      .|..++..+..+.+.+.++|..+..+.+...+...++...+...+..+.+++
T Consensus        93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~  144 (239)
T COG1579          93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE  144 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444444333333333

>PLN03188 kinesin-12 family protein; Provisional

Probab=97.04  E-value=1.4  Score=53.76  Aligned_cols=147  Identities=21%  Similarity=0.182  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 042557          135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAK  214 (545)
Q Consensus       135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~  214 (545)
                      ++.....--+.++-+++.+|+..++|..||+-+=..--..-+.|..+|....++-..-.+++.                 
T Consensus      1073 eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~e----------------- 1135 (1320)
T PLN03188       1073 ELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQE----------------- 1135 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence            344444444556667777788878877777765444444444444444333332211111111                 


Q ss_pred             HHHHHHHHHHHHHHhHhHHHHH--HHHhhhhhHHHhhHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhH
Q 042557          215 HEIGLLTNIIKEAKDESKISKA--EWEQKELHLVDCVKKSEEENSSLEKEI-----------NRLVNLLKETEEDACATK  281 (545)
Q Consensus       215 ~e~~~lkk~~E~~~~E~e~s~~--~~~~kE~~~~~~iK~~eee~~~~~~e~-----------~~l~e~l~~~E~~~~~~~  281 (545)
                                  =|.+.+.+.+  .-.+.+.-|   |+.+-.|++.++.+-           -.|..+|+++=.-+++. 
T Consensus      1136 ------------gi~dvkkaaakag~kg~~~~f---~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aa- 1199 (1320)
T PLN03188       1136 ------------GIDDVKKAAARAGVRGAESKF---INALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAA- 1199 (1320)
T ss_pred             ------------HHHHHHHHHHHhccccchHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH-
Confidence                        1223333333  333334443   555666666666653           33333333332222221 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042557          282 EEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKE  317 (545)
Q Consensus       282 ~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~  317 (545)
                         .+|--.||+||..+..|+++...+..++.+++-
T Consensus      1200 ---gellvrl~eaeea~~~a~~r~~~~eqe~~~~~k 1232 (1320)
T PLN03188       1200 ---GELLVRLKEAEEALTVAQKRAMDAEQEAAEAYK 1232 (1320)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               234444566666666677666666666666554

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.86  E-value=0.76  Score=48.00  Aligned_cols=217  Identities=21%  Similarity=0.217  Sum_probs=126.9

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHH----HHHHHHH
Q 042557           73 IGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE-------KLAASSVQNLLE----EKHKLIN  141 (545)
Q Consensus        73 v~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE-------k~lsseIe~L~e----el~kl~~  141 (545)
                      +..|+++..-++..|..-.+.-..+.++|+++.+.|..+-.++.+...-.       ....++--.+.+    ++..+..
T Consensus        65 Ln~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd  144 (305)
T PF14915_consen   65 LNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKD  144 (305)
T ss_pred             HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHH
Confidence            33333333333333333333334455556666666555554433222111       222222223333    3444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 042557          142 ELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLT  221 (545)
Q Consensus       142 ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lk  221 (545)
                      ..+.+..++.++...+..|...|+.....+++----+...|-.+.+...++..+.......+.+..              
T Consensus       145 ~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~--------------  210 (305)
T PF14915_consen  145 NNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVN--------------  210 (305)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------
Confidence            567777888888888888888888888888877777777777777777766666666655554432              


Q ss_pred             HHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHH
Q 042557          222 NIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDAC----ATKEEEAQLRDSLKEVEAE  297 (545)
Q Consensus       222 k~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~----~~~~E~~~lr~~Lk~ae~e  297 (545)
                                 .+..-|++           .++.+.-++.++.=|+-+|-+|-.+..    ++.+=-.++.++++.+.++
T Consensus       211 -----------k~~~Kqes-----------~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae  268 (305)
T PF14915_consen  211 -----------KYIGKQES-----------LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAE  268 (305)
T ss_pred             -----------HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                       13444555           677788888888777777777665532    1222233456666654444


Q ss_pred             HHH----HHHHHHHHHHHHHhHHHhHHhhHHH
Q 042557          298 VIY----MQETLGQARAESMKLKESFLDKETE  325 (545)
Q Consensus       298 ~~e----a~e~~~ea~~e~~~Lk~~l~dkE~e  325 (545)
                      ...    +.++..++..+..-|++.+-.-|++
T Consensus       269 ~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE  300 (305)
T PF14915_consen  269 SEKQVLLLEERNKELINECNHLKERLYQYEKE  300 (305)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            333    6777777888888888887665554

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.86  E-value=0.34  Score=45.50  Aligned_cols=45  Identities=20%  Similarity=0.328  Sum_probs=22.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           74 GRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQA  118 (545)
Q Consensus        74 ~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el  118 (545)
                      ..++..+..+..++...+.++.+++..+..|..+++.+...+..+
T Consensus        17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~   61 (143)
T PF12718_consen   17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA   61 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444445555555555555555555555555554433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=96.82  E-value=1.4  Score=50.61  Aligned_cols=264  Identities=18%  Similarity=0.179  Sum_probs=134.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHh-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042557            6 ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLE-------GNNDKLHDAESEIAALKEKVGLLEMTIGRQKA   78 (545)
Q Consensus         6 V~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE-------~lk~~LeeaesEI~~LqeKve~LE~ev~~le~   78 (545)
                      .+|.+...+.++.+|+.++.....=..+..-||.--..+++       .+..+|..+......++.+....+..+..+..
T Consensus       329 h~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~e  408 (739)
T PF07111_consen  329 HRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSE  408 (739)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666667777777777776666655555544433322222       33444444444444444444444433332222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------------------------HHHHHHHH
Q 042557           79 DLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE----------------------------KLAASSVQ  130 (545)
Q Consensus        79 ~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE----------------------------k~lsseIe  130 (545)
                      -       +...+..+.+.-..|+...+.|..+.+.+.|+-.+-                            ..+..++.
T Consensus       409 a-------v~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELq  481 (739)
T PF07111_consen  409 A-------VSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQ  481 (739)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHH
Confidence            2       222222333333333333333433333322222211                            13455566


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557          131 NLLEEKHKLINELENSREEE-EKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESM  209 (545)
Q Consensus       131 ~L~eel~kl~~ELE~~~~ee-Ekekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~  209 (545)
                      .+.++.+++..+|...-.-+ ..+..+-+.       .+++..........+..++...+..+..+..-|..|+..|++ 
T Consensus       482 qLReERdRl~aeLqlSa~liqqeV~~ArEq-------geaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe-  553 (739)
T PF07111_consen  482 QLREERDRLDAELQLSARLIQQEVGRAREQ-------GEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE-  553 (739)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-
Confidence            66666666666666443222 222223343       444444444444444445555566666677777777777663 


Q ss_pred             HHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHH
Q 042557          210 LDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEI-NRLVNLLKETEEDACATKEEEAQLR  288 (545)
Q Consensus       210 l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~-~~l~e~l~~~E~~~~~~~~E~~~lr  288 (545)
                         ++.+..+++--|.+.+...+.++                 ++.++    ++ .++++.|.++|++++..+-|-++--
T Consensus       554 ---s~eea~~lR~EL~~QQ~~y~~al-----------------qekvs----evEsrl~E~L~~~E~rLNeARREHtKaV  609 (739)
T PF07111_consen  554 ---STEEAAELRRELTQQQEVYERAL-----------------QEKVS----EVESRLREQLSEMEKRLNEARREHTKAV  609 (739)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               34444444444444322222222                 22222    22 5788888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 042557          289 DSLKEVEAEVIYMQETLGQA  308 (545)
Q Consensus       289 ~~Lk~ae~e~~ea~e~~~ea  308 (545)
                      -+|.|++-.+.-=+++..++
T Consensus       610 VsLRQ~qrqa~reKer~~E~  629 (739)
T PF07111_consen  610 VSLRQIQRQAAREKERNQEL  629 (739)
T ss_pred             HHHHHHHHHHHHhhchhHHH
Confidence            88887776665555555544

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.81  E-value=1.6  Score=50.89  Aligned_cols=333  Identities=21%  Similarity=0.250  Sum_probs=186.7

Q ss_pred             hHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHH
Q 042557            6 ARNLVEEWKI-RVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD--LDE   82 (545)
Q Consensus         6 V~DLl~Evkk-ql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~--leE   82 (545)
                      |-||+.|+.= -++-|+.|+..+++=.-...-.|.-.+.+|+.....|.+....|..|...+..+..-....+..  .+.
T Consensus       255 v~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~  334 (717)
T PF09730_consen  255 VSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDS  334 (717)
T ss_pred             cchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence            6789888864 5778999999997544444467777777888888888777777777777777766511100000  000


Q ss_pred             ------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHH
Q 042557           83 ------------S---ERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE----KLAASSVQNLLEEKHKLINEL  143 (545)
Q Consensus        83 ------------~---k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE----k~lsseIe~L~eel~kl~~EL  143 (545)
                                  .   ...+...+-.+...-.++..|+.+|..++..+..+..+.    ..+.+.+.++..++..+... 
T Consensus       335 ~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~-  413 (717)
T PF09730_consen  335 EKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKS-  413 (717)
T ss_pred             ccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence                        0   000222334444444455555555555544433333322    23344444444444444332 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHh---------
Q 042557          144 ENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKA--TNEKYESMLDD---------  212 (545)
Q Consensus       144 E~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~--aE~k~~~~l~e---------  212 (545)
                            ...-+..+.+|...|..+..-+.+....+..+|.+|-.+-.++.+|=.-+=.  =++=-++|||-         
T Consensus       414 ------~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD~yr~~r~~~~  487 (717)
T PF09730_consen  414 ------SREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRVMLDYYRQGRQTRR  487 (717)
T ss_pred             ------hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHHhhhhhhc
Confidence                  2222445677788888888888888888888888888888888873221100  01111111111         


Q ss_pred             --------------------------------------------------------------HHHHHHHHHHHHHHHHhH
Q 042557          213 --------------------------------------------------------------AKHEIGLLTNIIKEAKDE  230 (545)
Q Consensus       213 --------------------------------------------------------------a~~e~~~lkk~~E~~~~E  230 (545)
                                                                                    .+.+|..|..+|++    
T Consensus       488 ~~~~~e~~~~~s~~~~~~~~~~~e~~~~~~~~~~~s~~~s~~~S~~~D~r~ep~~i~nl~~~irdQikhL~~av~~----  563 (717)
T PF09730_consen  488 ESSSVEERGLSSPILTDRGASSREMITSESGESSPSPSSSCPGSPVSDSRKEPMNIYNLVAIIRDQIKHLQRAVDR----  563 (717)
T ss_pred             cCCCcccccccCcccccccccccccccCCCCCCCCCCCCCCCCCccchhccCCcchhhHHHHHHHHHHHHHHHHHH----
Confidence                                                                          11222222322222    


Q ss_pred             hHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 042557          231 SKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQA-R  309 (545)
Q Consensus       231 ~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea-~  309 (545)
                         +..-+..+=. .......+..+...+..+|-+|+..|.       .-++..+-||..||..-.-+.+|=..+... -
T Consensus       564 ---t~e~srq~~~-~~~~~~~~d~d~e~l~eqilKLKSLLS-------TKREQIaTLRTVLKANKqTAEvALanLKsKYE  632 (717)
T PF09730_consen  564 ---TTELSRQRVA-SRSSASEADKDKEELQEQILKLKSLLS-------TKREQIATLRTVLKANKQTAEVALANLKSKYE  632 (717)
T ss_pred             ---HHHHHhhhcc-ccccCCcccccHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               2221111111 001112245677778888888888888       557778999999977655444333222222 3


Q ss_pred             HHHHhHHHhHHhhHHHHHHHHHHHHH---HHhhH----HHHHHhHHHHHHHHHHHHhh
Q 042557          310 AESMKLKESFLDKETELQSVIQENEE---LRARE----ADSVKKVEELSSLLEEAMAK  360 (545)
Q Consensus       310 ~e~~~Lk~~l~dkE~eLq~i~~Ene~---Lr~~E----a~a~~~i~EL~~ll~ea~~~  360 (545)
                      .+=.-..+.+.++=++|..+..+--.   ||+.=    +-+.-.++|+.+.|+.|-.-
T Consensus       633 ~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemqrqL~aAEdE  690 (717)
T PF09730_consen  633 NEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQRQLAAAEDE  690 (717)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            34444567777888888888877666   56543    23556688888888877553

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.81  E-value=0.88  Score=47.89  Aligned_cols=169  Identities=18%  Similarity=0.150  Sum_probs=119.2

Q ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 042557           36 ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE-  114 (545)
Q Consensus        36 lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee-  114 (545)
                      .++..++.-|+.---+|+-+----.+|-.+...|...+..++..+......+.+...+++-....+.-+.+.-+..... 
T Consensus        62 ~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~  141 (306)
T PF04849_consen   62 NDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPES  141 (306)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhccccc
Confidence            4677777777777777766655557888888888888888888888877777777777766665555444333221111 


Q ss_pred             --------------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          115 --------------------KAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREA  174 (545)
Q Consensus       115 --------------------l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eea  174 (545)
                                          +..+..+-+.+..+-..|..+...+..+-..+   ++++..-|.+....|.+++..+..+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~---EekEqqLv~dcv~QL~~An~qia~L  218 (306)
T PF04849_consen  142 SESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTY---EEKEQQLVLDCVKQLSEANQQIASL  218 (306)
T ss_pred             CCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc---cHHHHHHHHHHHHHhhhcchhHHHH
Confidence                                34444444555555555555555555554433   5567777888888999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          175 KEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE  207 (545)
Q Consensus       175 kekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~  207 (545)
                      -..+.....+....+.+|..|.+-+.+.+.|++
T Consensus       219 seELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k  251 (306)
T PF04849_consen  219 SEELARKTEENRRQQEEITSLLSQIVDLQQRCK  251 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988888776

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.80  E-value=0.61  Score=45.94  Aligned_cols=120  Identities=18%  Similarity=0.175  Sum_probs=69.6

Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 042557           42 MRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEM---AKTVESLKFELETVKEEKAQA  118 (545)
Q Consensus        42 t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~sl---qkelesLkseLe~~eeel~el  118 (545)
                      ...++++..-=..+..+...|+..+..++-..+.|..++.+++..+...++-+...   ..++.+|+.....+++....+
T Consensus         7 ~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L   86 (193)
T PF14662_consen    7 LSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSL   86 (193)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555556666777777777777777777777777777776666555444   666667776666666664444


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          119 LNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLA  161 (545)
Q Consensus       119 ~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa  161 (545)
                      ...-+.+..+...|..++..+..+...+....+..++.+.+|.
T Consensus        87 ~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~  129 (193)
T PF14662_consen   87 LAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA  129 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence            4444444444444444444444444444444444444444443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.77  E-value=1.4  Score=49.68  Aligned_cols=77  Identities=21%  Similarity=0.249  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHH
Q 042557          159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISK  235 (545)
Q Consensus       159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~  235 (545)
                      +....|++...+.--....+..+-.-++..+.....+...|..++.+|+..-.+|+.+-...+.-++.+..++-...
T Consensus       429 ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~  505 (581)
T KOG0995|consen  429 EISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLK  505 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444445555555555566677777777775555555554444444444444433333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.77  E-value=0.93  Score=47.68  Aligned_cols=143  Identities=21%  Similarity=0.253  Sum_probs=102.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhH
Q 042557          171 AREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVK  250 (545)
Q Consensus       171 ~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK  250 (545)
                      +.....++..+..+-..+|.++..|...-...|.+.+-                  ++.+.-..++..|..=++|-.-+-
T Consensus       162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqq------------------Lv~dcv~QL~~An~qia~LseELa  223 (306)
T PF04849_consen  162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQ------------------LVLDCVKQLSEANQQIASLSEELA  223 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHH------------------HHHHHHHHhhhcchhHHHHHHHHH
Confidence            35556666666667777777777777666666666442                  222223355566666666666666


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557          251 KSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI  330 (545)
Q Consensus       251 ~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~  330 (545)
                      +--+++..-+.+|..|+.++.+.+.+++.+..|+++|+..|..       ++++=..+.+++..|++.-.+--+-|...+
T Consensus       224 ~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~-------ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ  296 (306)
T PF04849_consen  224 RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA-------SKESQRQLQAELQELQDKYAECMAMLHEAQ  296 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777888889999999999999999999999999999988843       444555567778888888877777777777


Q ss_pred             HHHHHHHh
Q 042557          331 QENEELRA  338 (545)
Q Consensus       331 ~Ene~Lr~  338 (545)
                      .|.-.||.
T Consensus       297 EElk~lR~  304 (306)
T PF04849_consen  297 EELKTLRK  304 (306)
T ss_pred             HHHHHhhC
Confidence            77766664

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.76  E-value=1.7  Score=50.58  Aligned_cols=166  Identities=17%  Similarity=0.124  Sum_probs=79.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 042557            4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDES   83 (545)
Q Consensus         4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~   83 (545)
                      .|=+.||.|-..+=..|-.++....-=-+-.-..+.-++.+.+.+.....++......+..+...|..++..++..-..+
T Consensus        16 ~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rl   95 (717)
T PF09730_consen   16 EREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARL   95 (717)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666665544444444333332222222334444444444444444444444444444444444444444433333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           84 ERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASA  163 (545)
Q Consensus        84 k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~A  163 (545)
                      =+.+..++.|..++|+.|-.|+.-                  +-+++.++=++.++..+++.++.+++.+-.--+.....
T Consensus        96 l~dyselEeENislQKqvs~Lk~s------------------QvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~q  157 (717)
T PF09730_consen   96 LQDYSELEEENISLQKQVSVLKQS------------------QVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQ  157 (717)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHh------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555666655555522                  22344444455555555555555554444444444444


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHH
Q 042557          164 LHEVSVEAREAKEKLLSSQTEHET  187 (545)
Q Consensus       164 L~E~e~E~eeakekl~~~Q~Ele~  187 (545)
                      |.++=..+...|+.-..++.||++
T Consensus       158 leEALesl~~EReqk~~LrkEL~~  181 (717)
T PF09730_consen  158 LEEALESLKSEREQKNALRKELDQ  181 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555556666655

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.68  E-value=1.7  Score=49.38  Aligned_cols=110  Identities=15%  Similarity=0.201  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHH-----
Q 042557            5 YARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAES----EIAALKEKVGLLEMTIGR-----   75 (545)
Q Consensus         5 RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~Leeaes----EI~~LqeKve~LE~ev~~-----   75 (545)
                      .+++.|..++.++..+-..+.......+-....+.-+...|..++..|-...-    .+..|..++..++.....     
T Consensus       105 ~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt  184 (560)
T PF06160_consen  105 EIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELT  184 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677777777777777766666666666666666666666666543332    234455555555443322     


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           76 QKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE  114 (545)
Q Consensus        76 le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee  114 (545)
                      -..+..+++..+...+..+..+...+..+..-+..+...
T Consensus       185 ~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~  223 (560)
T PF06160_consen  185 ENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKE  223 (560)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            245677788888888888888888888877777777665

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.62  E-value=0.58  Score=43.96  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=18.3

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042557           45 LEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHS   88 (545)
Q Consensus        45 LE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~   88 (545)
                      +..+...+.....+|..|+.++..++.+|..+...+.+++..+.
T Consensus        23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le   66 (143)
T PF12718_consen   23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE   66 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444444444333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.62  E-value=2  Score=49.40  Aligned_cols=133  Identities=22%  Similarity=0.239  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----
Q 042557            6 ARNLVEEWKIRVEELEMQAEEAHKLKRSAS--ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD----   79 (545)
Q Consensus         6 V~DLl~Evkkql~sLE~QAeKA~ky~elk~--lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~----   79 (545)
                      +...|.|..+++.-|+.-...  +++-++.  ....+++.+|+..+..|.++.+.-..|..........+..+...    
T Consensus       259 l~~~l~es~~~~~qLeE~~~~--q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~  336 (786)
T PF05483_consen  259 LLLLLQESQDKCNQLEEKTKE--QHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQ  336 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            455666777777777654443  3334444  77888889999999999998888888888777766655444333    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           80 LDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSR  147 (545)
Q Consensus        80 leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~  147 (545)
                      +++.+.....-.--+..++..+.+|+.-|..       =..+-+.+.+++.-++-++.+-..+|+...
T Consensus       337 ~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~-------Eqqr~~~~ed~lk~l~~eLqkks~eleEmt  397 (786)
T PF05483_consen  337 MEELNKAKAQHSFVVTELQTTICNLKELLTT-------EQQRLKKNEDQLKILTMELQKKSSELEEMT  397 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhhHHHHHHH
Confidence            3333333222223333444444444433322       233334455555555555555555555443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.61  E-value=2.7  Score=50.84  Aligned_cols=18  Identities=28%  Similarity=0.211  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 042557          253 EEENSSLEKEINRLVNLL  270 (545)
Q Consensus       253 eee~~~~~~e~~~l~e~l  270 (545)
                      +..+.-++..+......+
T Consensus      1660 ~q~~~~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1660 EQGLEILQKYYELVDRLL 1677 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444555544333333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.60  E-value=0.42  Score=44.05  Aligned_cols=57  Identities=26%  Similarity=0.327  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q 042557          215 HEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLK  271 (545)
Q Consensus       215 ~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~  271 (545)
                      .++..++..++.....+..+...|......|.+.|..++..+..|..+|.-|-++|-
T Consensus        73 ~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   73 QEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444455555566688899999999999999999999999999888877764

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.58  E-value=2.6  Score=50.30  Aligned_cols=71  Identities=27%  Similarity=0.247  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557          218 GLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL  291 (545)
Q Consensus       218 ~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L  291 (545)
                      .++..+|+.+.+=   +..+..++...+-+--|+++-++.-|+..+.++.-++...|.....+.-|+++|....
T Consensus       382 rrlt~tleelqss---s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~  452 (1195)
T KOG4643|consen  382 RRLTGTLEELQSS---SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEET  452 (1195)
T ss_pred             HHHHHHHHHHhhh---hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555554332   3345555566666555667777777777777777777777766666666666665554

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.54  E-value=0.72  Score=43.39  Aligned_cols=63  Identities=24%  Similarity=0.292  Sum_probs=39.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           48 NNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELET  110 (545)
Q Consensus        48 lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~  110 (545)
                      .-..|.++..+.+.|++++.++++++...+.....+......+.+++..+...+..+...+..
T Consensus         8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~   70 (140)
T PF10473_consen    8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQ   70 (140)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777888888888887777776666666655555555555555555544444444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.51  E-value=2.5  Score=49.26  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHH
Q 042557           11 EEWKIRVEELEMQAEEAHKLKRSAS   35 (545)
Q Consensus        11 ~Evkkql~sLE~QAeKA~ky~elk~   35 (545)
                      .||++++ .|++|+++-+..++-++
T Consensus       365 qErk~ql-ElekqLerQReiE~qrE  388 (1118)
T KOG1029|consen  365 QERKAQL-ELEKQLERQREIERQRE  388 (1118)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            3444444 45666666555544443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.48  E-value=2.4  Score=48.77  Aligned_cols=122  Identities=18%  Similarity=0.193  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           85 RKHSMAKNETSEMAKTVESLKFELETVKEE---KAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLA  161 (545)
Q Consensus        85 ~eL~~~ekEl~slqkelesLkseLe~~eee---l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa  161 (545)
                      ..|...++.+..++....+...-+..+.++   ++.+....+.+..++..+.+..-.+.++--.+...+-.+.-.-.+|.
T Consensus       122 erL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~  201 (617)
T PF15070_consen  122 ERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQ  201 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Confidence            333444444444444433333334444433   55566666777777777777666666665444555555555556778


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          162 SALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKY  206 (545)
Q Consensus       162 ~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~  206 (545)
                      ..|.++...+...++++..+-.++..+..+...+-.-|.-...-|
T Consensus       202 ~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~  246 (617)
T PF15070_consen  202 KKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAY  246 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888877777777777766666564433333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.47  E-value=2.7  Score=49.14  Aligned_cols=101  Identities=11%  Similarity=0.155  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHhhh
Q 042557            7 RNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTI-------GRQKAD   79 (545)
Q Consensus         7 ~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev-------~~le~~   79 (545)
                      +|-+-+.+.|++.|....-..+--.......+.-+..++....+.|+.+++..-.|.+.+..-..+|       ..--..
T Consensus        98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~  177 (1265)
T KOG0976|consen   98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEE  177 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence            4455667778888877776665555555577777777777777777777776666555444433333       223334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           80 LDESERKHSMAKNETSEMAKTVESLKFE  107 (545)
Q Consensus        80 leE~k~eL~~~ekEl~slqkelesLkse  107 (545)
                      |.+...++...-.+.....+.++.+...
T Consensus       178 lt~~~~q~~tkl~e~~~en~~le~k~~k  205 (1265)
T KOG0976|consen  178 LNEFNMEFQTKLAEANREKKALEEKLEK  205 (1265)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444554444444444444444333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.43  E-value=0.56  Score=43.19  Aligned_cols=122  Identities=16%  Similarity=0.247  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhh
Q 042557          162 SALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQK  241 (545)
Q Consensus       162 ~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~k  241 (545)
                      ..+..+..++..+......+...+..++.++.........|..+|...       ...                      
T Consensus         3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~E-------l~~----------------------   53 (132)
T PF07926_consen    3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERE-------LVK----------------------   53 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH----------------------
Confidence            345667777777778888888888888999999999999999999832       221                      


Q ss_pred             hhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042557          242 ELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL----KEVEAEVIYMQETLGQARAESMKLKE  317 (545)
Q Consensus       242 E~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L----k~ae~e~~ea~e~~~ea~~e~~~Lk~  317 (545)
                      -+..+..|..+..++..++.++..|......+...       +...+...    ...+.++..++.++.++..+|.-|-+
T Consensus        54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~-------l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~  126 (132)
T PF07926_consen   54 HAEDIKELQQLREELQELQQEINELKAEAESAKAE-------LEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD  126 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23334455556666666666666666665544443       44444444    45678888899999999999988866


Q ss_pred             hH
Q 042557          318 SF  319 (545)
Q Consensus       318 ~l  319 (545)
                      .+
T Consensus       127 Ql  128 (132)
T PF07926_consen  127 QL  128 (132)
T ss_pred             HH
Confidence            55

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.42  E-value=2.6  Score=48.49  Aligned_cols=39  Identities=23%  Similarity=0.230  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHH
Q 042557          282 EEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFL  320 (545)
Q Consensus       282 ~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~  320 (545)
                      .+...-+..+..+..++..+++.++-+..+|..|+..+.
T Consensus       272 ~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls  310 (617)
T PF15070_consen  272 HEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLS  310 (617)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            334444444556678888899999999999999998885

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.40  E-value=1.6  Score=45.74  Aligned_cols=109  Identities=19%  Similarity=0.265  Sum_probs=68.3

Q ss_pred             hhhhhHHHhhHhhHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          240 QKELHLVDCVKKSEEENSSLE-------------KEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLG  306 (545)
Q Consensus       240 ~kE~~~~~~iK~~eee~~~~~-------------~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~  306 (545)
                      ..|..||..|..+..++...+             ++++.++.....-=.+++.+.++-.+.-..|-.+-.++.+....+.
T Consensus       131 e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkead  210 (294)
T COG1340         131 EEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEAD  210 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677777777777666655             4445555555555556666666666666666666777777777777


Q ss_pred             HHHHHHHhHHHhHHhhHHHHHHHHHHHHH-------HHhhHHHHHHhHH
Q 042557          307 QARAESMKLKESFLDKETELQSVIQENEE-------LRAREADSVKKVE  348 (545)
Q Consensus       307 ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~-------Lr~~Ea~a~~~i~  348 (545)
                      ++..+...+.......-.++-+++.++.+       ||..+.+++....
T Consensus       211 e~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~  259 (294)
T COG1340         211 ELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREK  259 (294)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766666666666666666555554       4555555544433

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=96.36  E-value=1.4  Score=44.89  Aligned_cols=58  Identities=24%  Similarity=0.314  Sum_probs=28.2

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          118 ALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEK  177 (545)
Q Consensus       118 l~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakek  177 (545)
                      ...+-..+...|.++...+..+...+..+..  ....---.++..+|.++..-+++++.+
T Consensus        85 t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~~~l~ea~~mL~emr~r  142 (264)
T PF06008_consen   85 TLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQRALAEAQRMLEEMRKR  142 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            3344444555555555555555555444433  111112244666666666666666554

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.34  E-value=1.2  Score=43.92  Aligned_cols=183  Identities=22%  Similarity=0.291  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557           11 EEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMA   90 (545)
Q Consensus        11 ~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~   90 (545)
                      .=+++++..|+-+++.+........       ..|...-..-.+....+..|..+...++-.+..+...+.+++.--...
T Consensus         7 a~lnrri~~leeele~aqErl~~a~-------~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~a   79 (205)
T KOG1003|consen    7 AALNRRIQLLEEELDRAQERLATAL-------QKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKA   79 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4468889999999999887654433       333333333344444555555555555555555666666665544444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           91 KNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVE  170 (545)
Q Consensus        91 ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E  170 (545)
                      .+.+..--..|       --++.++..+..+-....+.+..|.+++..+.+.|..+....++.-...+..-..|..++..
T Consensus        80 drK~eEVarkL-------~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdK  152 (205)
T KOG1003|consen   80 DRKYEEVARKL-------VIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDK  152 (205)
T ss_pred             HHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            43333322222       22333344445555556667777777777778888777777666666666666666666666


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          171 AREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE  207 (545)
Q Consensus       171 ~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~  207 (545)
                      ++++..+...+...+..+..++++|.--|...-.+|.
T Consensus       153 LkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~  189 (205)
T KOG1003|consen  153 LKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYE  189 (205)
T ss_pred             HhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHH
Confidence            6666666666666677777888888888888887777

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=96.31  E-value=4.1  Score=49.61  Aligned_cols=46  Identities=11%  Similarity=0.085  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK  205 (545)
Q Consensus       160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k  205 (545)
                      +...+..+......++..+...+..+..++..+..+...+..+...
T Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  739 (1047)
T PRK10246        694 LTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQ  739 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444445555555555555555555555444433

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.27  E-value=3.1  Score=47.84  Aligned_cols=287  Identities=15%  Similarity=0.144  Sum_probs=132.6

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 042557           44 QLEGNNDKLHDAESEIAALKEKVGLLEM-------TIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE--  114 (545)
Q Consensus        44 eLE~lk~~LeeaesEI~~LqeKve~LE~-------ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee--  114 (545)
                      .+.++...|.++...|+.|++......-       ....+...|.+++..+.....--..+...+......+-.+..+  
T Consensus       255 ~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe  334 (786)
T PF05483_consen  255 KIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKE  334 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3455666666666777766665443221       2233444444444444443333333333333333333333322  


Q ss_pred             --HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 042557          115 --KAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQI  192 (545)
Q Consensus       115 --l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Ei  192 (545)
                        +..+..-...-+..+..+.--+..|..-|..-..+..+....+-.++..|..-+++++++-.--.....+++.++...
T Consensus       335 ~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L  414 (786)
T PF05483_consen  335 AQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKIL  414 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence              222222222233344444444444444444444444554544445555555555555554433333333333333333


Q ss_pred             HHHHHHHHHHH--HHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHH
Q 042557          193 EDLRIVLKATN--EKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLL  270 (545)
Q Consensus       193 e~Lq~~L~~aE--~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l  270 (545)
                      ..-+-.|..-.  .+....|..+..++..+--..+.-..+++..+......+......|+.+.-++..-+--+.+|....
T Consensus       415 ~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~  494 (786)
T PF05483_consen  415 AEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNC  494 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33221111000  1112223333344444444455555666666666666666666666665555555445555565555


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557          271 KETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI  330 (545)
Q Consensus       271 ~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~  330 (545)
                      ..-..+...+..+-..+-..||.....++.......-+..++..|-+.-.-+=++|.++.
T Consensus       495 nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~  554 (786)
T PF05483_consen  495 NKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVK  554 (786)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555556655555555555555555544444443343333333333333333333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK09039 hypothetical protein; Validated

Probab=96.11  E-value=1.9  Score=46.07  Aligned_cols=69  Identities=16%  Similarity=0.164  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhH
Q 042557          158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDE  230 (545)
Q Consensus       158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E  230 (545)
                      ..+..+|.+......+..-.+..++.+++.+|.++..|+.+|.+++.+..    ++...|..+...++..++.
T Consensus       119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~----~~~~~i~~L~~~L~~a~~~  187 (343)
T PRK09039        119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDR----ESQAKIADLGRRLNVALAQ  187 (343)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            34456666666677777777777777777777777777777777777653    5556666666666665433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.11  E-value=5.6  Score=49.21  Aligned_cols=62  Identities=13%  Similarity=0.289  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           53 HDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE  114 (545)
Q Consensus        53 eeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee  114 (545)
                      ..+...+...+.........+..+...+..++.........+...+..+..+...+..+...
T Consensus       472 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~  533 (1201)
T PF12128_consen  472 EQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQ  533 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444444444444444555555555555555555555666666666666666655554

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.09  E-value=0.004  Score=72.08  Aligned_cols=71  Identities=27%  Similarity=0.305  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHhHHHHHHHHHHHHHHHHhH
Q 042557          160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATN---EKYESMLDDAKHEIGLLTNIIKEAKDE  230 (545)
Q Consensus       160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE---~k~~~~l~ea~~e~~~lkk~~E~~~~E  230 (545)
                      |...+-.+..++.+....+..++.+..++..++..++..+....   .+++-...=+..|++.|+..|.....|
T Consensus       355 L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e  428 (722)
T PF05557_consen  355 LTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKE  428 (722)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            34444446666666666677777777777777777666654332   334434444556667777666664443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.06  E-value=1.7  Score=42.92  Aligned_cols=135  Identities=19%  Similarity=0.229  Sum_probs=56.6

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 042557           45 LEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKL  124 (545)
Q Consensus        45 LE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~  124 (545)
                      +..++..+.++...+..+......|..-..+....|+.....-..+-+-+..+..+|..|+..++.+.+.       +..
T Consensus        14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~-------~r~   86 (194)
T PF15619_consen   14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQ-------ERE   86 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence            3333333444444444444444333332333333332222222222333444444444444444444444       333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 042557          125 AASSVQNLLEEKHKLINELENSREEEE-KSKKAMESLASALHEVSVEAREAKEKLLSSQTEHE  186 (545)
Q Consensus       125 lsseIe~L~eel~kl~~ELE~~~~eeE-kekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele  186 (545)
                      +.-.+.....++.++...+..+..-.+ +-=..-+.|+..|..+...+.....++..+...++
T Consensus        87 ~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le  149 (194)
T PF15619_consen   87 LERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE  149 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344334444444444443322211 00001155666666666666666666666555444

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=96.06  E-value=3  Score=49.12  Aligned_cols=114  Identities=15%  Similarity=0.242  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           95 SEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREA  174 (545)
Q Consensus        95 ~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eea  174 (545)
                      ..+...+..+......++..+.........+..++......+..+..+|..+..--....-.+.-+...+..+...+..+
T Consensus       592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~  671 (769)
T PF05911_consen  592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDL  671 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            33444444444444444444444444444555555555555555555555444433333333333333333333333344


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          175 KEKLLSSQTEHETYEAQIEDLRIVLKATNEKYES  208 (545)
Q Consensus       175 kekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~  208 (545)
                      ..++..++..+..+..++..-+..-.+...+|+.
T Consensus       672 e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~  705 (769)
T PF05911_consen  672 EAEAEELQSKISSLEEELEKERALSEELEAKCRE  705 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            4444444444444455555555555566666663

The function of this family is unknown.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.97  E-value=5.9  Score=48.34  Aligned_cols=46  Identities=17%  Similarity=0.207  Sum_probs=22.2

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557          249 VKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA  296 (545)
Q Consensus       249 iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~  296 (545)
                      .+-.+.++..+.++..++  -|.+.|.+++.+......=+++---+++
T Consensus       676 lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~  721 (1317)
T KOG0612|consen  676 LKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAEN  721 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHH
Confidence            333555555555555555  4444455555555444443333333333

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=95.94  E-value=1.7  Score=41.79  Aligned_cols=116  Identities=19%  Similarity=0.235  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557            5 YARNLVEEWKIRVEELEMQAEEAHKLKRSAS--------ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQ   76 (545)
Q Consensus         5 RV~DLl~Evkkql~sLE~QAeKA~ky~elk~--------lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~l   76 (545)
                      .-+..+..++-+.-+|..++.++..-.+.+.        .++..+..+-..+...+++-+.++..|+.....--..++-+
T Consensus         3 ~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~   82 (177)
T PF13870_consen    3 QKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHV   82 (177)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788888888888888888877766665        55555666666666666667777777776666555556666


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557           77 KADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN  120 (545)
Q Consensus        77 e~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~e  120 (545)
                      +..+......+..+..++......+..++..+..+..++..+..
T Consensus        83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~  126 (177)
T PF13870_consen   83 KEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRK  126 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666665555443333

>PRK09039 hypothetical protein; Validated

Probab=95.92  E-value=1.9  Score=46.04  Aligned_cols=75  Identities=20%  Similarity=0.159  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHH
Q 042557          159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAE  237 (545)
Q Consensus       159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~  237 (545)
                      .+...+..+..++...+..+...+..+..++.+|..|+..|...    +..|+.++........+++.+...+..+++.
T Consensus       113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l----e~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~  187 (343)
T PRK09039        113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL----EAALDASEKRDRESQAKIADLGRRLNVALAQ  187 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666667777777777777777777777777777766333    3446666666666666666666666666554

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=95.85  E-value=5.3  Score=46.85  Aligned_cols=86  Identities=13%  Similarity=0.127  Sum_probs=58.5

Q ss_pred             HHHHHHhHH---hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           27 AHKLKRSAS---ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVES  103 (545)
Q Consensus        27 A~ky~elk~---lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkeles  103 (545)
                      .+.|++-..   ..+.-...++..+...+.+++.+...||.-+..++.....-+.+|+.+..++...+++++....+|+.
T Consensus        87 triyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~  166 (1265)
T KOG0976|consen   87 TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFM  166 (1265)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHH
Confidence            355665544   55666667777777777777777777777777777777666777777777777777777776666666


Q ss_pred             HHHHHHHHH
Q 042557          104 LKFELETVK  112 (545)
Q Consensus       104 LkseLe~~e  112 (545)
                      .-..|+..-
T Consensus       167 ~~~~L~nk~  175 (1265)
T KOG0976|consen  167 IGEDLHDKN  175 (1265)
T ss_pred             HHHHHhhhh
Confidence            555554433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.82  E-value=3.1  Score=47.68  Aligned_cols=186  Identities=18%  Similarity=0.290  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 042557          135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAK  214 (545)
Q Consensus       135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~  214 (545)
                      ++..+...|+.+....+.....+..+...+..+..+..+........+.++       .        ...+.-.+|-++.
T Consensus       329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~-------~--------l~~k~~~lL~d~e  393 (594)
T PF05667_consen  329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL-------K--------LKKKTVELLPDAE  393 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--------HHHHHHHHhcCcH
Confidence            444444444444444444444444444444444444444443333332222       1        2222233455555


Q ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 042557          215 HEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEV  294 (545)
Q Consensus       215 ~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~a  294 (545)
                      .-+..|...++.-..-+..-...|.....-++.-++.+......-..+..+....++....+.+.+..|...--..++++
T Consensus       394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL  473 (594)
T PF05667_consen  394 ENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQL  473 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555665665555555555667777777776666666655444444443344444433333333333333333333333


Q ss_pred             HHHHHHHHHHHHHH--HHHHHhHHHhHHhhHHHHHHHHHHHHH
Q 042557          295 EAEVIYMQETLGQA--RAESMKLKESFLDKETELQSVIQENEE  335 (545)
Q Consensus       295 e~e~~ea~e~~~ea--~~e~~~Lk~~l~dkE~eLq~i~~Ene~  335 (545)
                      ..++.-....+.--  +.-......++.+..+++.-|..|.-.
T Consensus       474 ~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~  516 (594)
T PF05667_consen  474 VKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRE  516 (594)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            33332222221111  333344445555555555555555444

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.67  E-value=4.6  Score=44.80  Aligned_cols=299  Identities=16%  Similarity=0.150  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 042557           52 LHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQN  131 (545)
Q Consensus        52 LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~  131 (545)
                      .+....+|+.|+.+.+.|...+....    +..+.+....+..+.++...+.+.+....++.....-...-++++++|..
T Consensus       266 ~~~i~~~i~~lk~~n~~l~e~i~ea~----k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~  341 (622)
T COG5185         266 VHIINTDIANLKTQNDNLYEKIQEAM----KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL  341 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            34455555555555555443332111    11112222233334444444444444444444433333344555555655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 042557          132 LLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED----LRIVLKATNEKYE  207 (545)
Q Consensus       132 L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~----Lq~~L~~aE~k~~  207 (545)
                      ..+++..|....+.++.++.+-.=    -....+.+-++..++-..+..+--..+.++..+..    .++..+..+..++
T Consensus       342 kEeei~~L~~~~d~L~~q~~kq~I----s~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~  417 (622)
T COG5185         342 KEEEIKALQSNIDELHKQLRKQGI----STEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLR  417 (622)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            555665555555555555543220    11222233334444444444443334444444433    2333333333333


Q ss_pred             HhHHhHHHHHHHHHHHHHHHHhHh--HHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHH-----H---HHHHHHHHHHHHH
Q 042557          208 SMLDDAKHEIGLLTNIIKEAKDES--KISKAEWEQKELHLVDCVKKSEEENSSLEKEI-----N---RLVNLLKETEEDA  277 (545)
Q Consensus       208 ~~l~ea~~e~~~lkk~~E~~~~E~--e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~-----~---~l~e~l~~~E~~~  277 (545)
                       -++-....|.+-...+-..-+.+  ++--...+-...|+-..|+++..++.+--...     +   .|-+-....+.-.
T Consensus       418 -~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i  496 (622)
T COG5185         418 -QYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDI  496 (622)
T ss_pred             -HHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHH
Confidence             12333333333322222211111  11112344556777788888888876543322     1   2344444444555


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH----HHhHHHhHHhhHHHHHHHHHHHHHHHhhHHH
Q 042557          278 CATKEEEAQLRDSLKEVEAEVIYMQET-----------LGQARAE----SMKLKESFLDKETELQSVIQENEELRAREAD  342 (545)
Q Consensus       278 ~~~~~E~~~lr~~Lk~ae~e~~ea~e~-----------~~ea~~e----~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~  342 (545)
                      ..+.+++..+-+.|-.|-+..+..++.           .+-+..+    |..-+.++++.|.-+|++.=+.|.+.++=-+
T Consensus       497 ~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~  576 (622)
T COG5185         497 NELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNR  576 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHH
Confidence            555555555555553333332222222           2222222    2233467788888888888888887776555


Q ss_pred             HHHhH-HHHHHHHHHHHh
Q 042557          343 SVKKV-EELSSLLEEAMA  359 (545)
Q Consensus       343 a~~~i-~EL~~ll~ea~~  359 (545)
                      .+-+| +++..++.+++.
T Consensus       577 ~r~~i~k~V~~v~~~~~~  594 (622)
T COG5185         577 KRYKIHKQVIHVIDITSK  594 (622)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            55554 456666666654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.67  E-value=6.2  Score=46.33  Aligned_cols=123  Identities=20%  Similarity=0.186  Sum_probs=63.3

Q ss_pred             HHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 042557          235 KAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL-------KEVEAEVIYMQETLGQ  307 (545)
Q Consensus       235 ~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L-------k~ae~e~~ea~e~~~e  307 (545)
                      +++-..+...+..-+++.++++..+-..+...-+++-.+..-+..+..++......|       |-.-+.+.+..+.+.-
T Consensus       801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~s  880 (970)
T KOG0946|consen  801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISS  880 (970)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhh
Confidence            333344455555566666666666655554444444444444444444433333322       2222222222222111


Q ss_pred             --HHHHHHhHHHhHH-----hhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 042557          308 --ARAESMKLKESFL-----DKETELQSVIQENEELRAREADSVKKVEELSSLLEEA  357 (545)
Q Consensus       308 --a~~e~~~Lk~~l~-----dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea  357 (545)
                        +++++..|.-.+.     ..+..+.++.+|+++|-+--+.-..+|.-|++.+.-.
T Consensus       881 l~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL  937 (970)
T KOG0946|consen  881 LEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDL  937 (970)
T ss_pred             HHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence              2334443333222     2345677888899998888888888888888777653

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.63  E-value=2.7  Score=41.97  Aligned_cols=38  Identities=24%  Similarity=0.266  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          124 LAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLA  161 (545)
Q Consensus       124 ~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa  161 (545)
                      .+...+.+|..+..++..-+..++.-++..++...+..
T Consensus        87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~  124 (207)
T PF05010_consen   87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYE  124 (207)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33333444444444444444444444444444443333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.59  E-value=7.4  Score=46.64  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHH
Q 042557          296 AEVIYMQETLGQARAESMKLKESFLDKETELQSV  329 (545)
Q Consensus       296 ~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i  329 (545)
                      ..+..++.+...+......|...+..+++.++..
T Consensus       586 ~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~  619 (908)
T COG0419         586 EELEELRERLKELKKKLKELEERLSQLEELLQSL  619 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444444555555666666666666666666666

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.56  E-value=5.8  Score=45.27  Aligned_cols=214  Identities=23%  Similarity=0.259  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 042557          137 HKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEK----LLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDD  212 (545)
Q Consensus       137 ~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakek----l~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~e  212 (545)
                      ..+..+......+++...+-+..|..++.....++-+.+..    +....+++.-+-.+++..+..+..++......-.+
T Consensus       185 ~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~q  264 (629)
T KOG0963|consen  185 AGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQ  264 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444555555555555555555555555554444    44444444444444444444444444332211111


Q ss_pred             ---HHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042557          213 ---AKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRD  289 (545)
Q Consensus       213 ---a~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~  289 (545)
                         +++.+...      -+-...-...--++++.....-..-.+-.-.++..+++...+++...|+++.+...+.++|+.
T Consensus       265 l~~~N~~~~~~------~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~  338 (629)
T KOG0963|consen  265 LAKANSSKKLA------KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKE  338 (629)
T ss_pred             HHhhhhhhhhc------cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11111000      000000001112224444333333334444566666778888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-----------HH---HhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 042557          290 SLKEVEAEVIYMQETLGQARA-----------ES---MKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLE  355 (545)
Q Consensus       290 ~Lk~ae~e~~ea~e~~~ea~~-----------e~---~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~  355 (545)
                      .|+.- +.+.+.+..+.++++           ++   ..|-..|++|+.-||   .+|-.||++=......+.+++.-.+
T Consensus       339 kL~~~-sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq---~e~a~Lr~~n~~~~~~~~~~~~~~~  414 (629)
T KOG0963|consen  339 KLNSR-SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQ---NENASLRVANSGLSGRITELSKKGE  414 (629)
T ss_pred             HHhhh-ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhh---HHHHHHhccccccchhHHHHHhhhh
Confidence            99443 777777777776643           22   446667788887655   4666677776666666666666555


Q ss_pred             HHHhh
Q 042557          356 EAMAK  360 (545)
Q Consensus       356 ea~~~  360 (545)
                      +...+
T Consensus       415 el~~~  419 (629)
T KOG0963|consen  415 ELEAK  419 (629)
T ss_pred             hhHHH
Confidence            55443

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.55  E-value=3.5  Score=42.66  Aligned_cols=170  Identities=17%  Similarity=0.190  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHH--
Q 042557           52 LHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE----KLA--  125 (545)
Q Consensus        52 LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE----k~l--  125 (545)
                      +....+.+..++..+..++.+|..+..+++++...+...+.++...+.++..|..+|..+++.+..-.+-.    ..+  
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~  112 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV  112 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555532111111    100  


Q ss_pred             ----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 042557          126 ----ASSVQNLLE--EKHKLINELENSREEEEKSKKAMESLA---SALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLR  196 (545)
Q Consensus       126 ----sseIe~L~e--el~kl~~ELE~~~~eeEkekka~EeLa---~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq  196 (545)
                          .+=|.-+.+  -+..+..++..+..-.+--++.++.+.   ..|+..+..+....+.+...+.+++.....+..-+
T Consensus       113 nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk  192 (265)
T COG3883         113 NGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQK  192 (265)
T ss_pred             cCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                111222222  344455555555555444444444433   45666666666667777777777776666666666


Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHH
Q 042557          197 IVLKATNEKYESMLDDAKHEIGLLT  221 (545)
Q Consensus       197 ~~L~~aE~k~~~~l~ea~~e~~~lk  221 (545)
                      ..++..-..+..-...+..++..|.
T Consensus       193 ~e~~~l~~~~aa~~a~~~~e~a~l~  217 (265)
T COG3883         193 AEKNALIAALAAKEASALGEKAALE  217 (265)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            6666666666655556666666666

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.50  E-value=5  Score=44.07  Aligned_cols=73  Identities=14%  Similarity=0.253  Sum_probs=51.2

Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEK  115 (545)
Q Consensus        43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel  115 (545)
                      .+++....+++..+..|..-+++...|++++..++.++..+...+-.....+..+.+.|..+...|..++.+.
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            5667777777777777777777777777777777777777777777776666666666666666666655553

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.49  E-value=4.1  Score=43.03  Aligned_cols=89  Identities=19%  Similarity=0.234  Sum_probs=66.3

Q ss_pred             HHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          226 EAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETL  305 (545)
Q Consensus       226 ~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~  305 (545)
                      ....++...+..|..+=-.|.+++.+|-+=+...+.+|+++.-.....|.++..++.-.+....+|=....+.......+
T Consensus       209 ~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~  288 (309)
T PF09728_consen  209 ETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKEL  288 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            44567777888888888999999999999999999999999999998888877777777777666654444444444444


Q ss_pred             HHHHHHHHh
Q 042557          306 GQARAESMK  314 (545)
Q Consensus       306 ~ea~~e~~~  314 (545)
                      .-++..+..
T Consensus       289 ~~~~~k~~k  297 (309)
T PF09728_consen  289 EKLKKKIEK  297 (309)
T ss_pred             HHHHHHHHH
Confidence            444333333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=95.40  E-value=1.5  Score=48.80  Aligned_cols=143  Identities=20%  Similarity=0.165  Sum_probs=102.7

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557           41 VMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN  120 (545)
Q Consensus        41 ~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~e  120 (545)
                      +...++-++..|..+..++..|.-+.-.|..+-......-   .+.++-+.++++.....+.++..+|...-.++....+
T Consensus       157 ~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~ke---q~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~E  233 (596)
T KOG4360|consen  157 QRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKE---QQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQE  233 (596)
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3355777888888888888888888777766443333222   2334567788888888888888888888888887888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 042557          121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHE  186 (545)
Q Consensus       121 kEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele  186 (545)
                      ....+-++|.++..++.-+.++-+....-+-..+-+.+.+++.+++++...-+.-+-+...+.+|.
T Consensus       234 e~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk  299 (596)
T KOG4360|consen  234 ENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELK  299 (596)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999988887777777777777777776665554444444444443333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.39  E-value=4.6  Score=42.93  Aligned_cols=158  Identities=15%  Similarity=0.128  Sum_probs=94.7

Q ss_pred             HhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHHH
Q 042557           35 SESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKA--------------DLDESERKHSMAKNETSEMAKT  100 (545)
Q Consensus        35 ~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~--------------~leE~k~eL~~~ekEl~slqke  100 (545)
                      ..-|.....+|+.++..-.....-+..|+.+...+.+.+..+..              .-..+-.-|.........++.+
T Consensus         8 ~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~E   87 (319)
T PF09789_consen    8 SEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEE   87 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence            34455566667777666666666677777776666665554441              2223344556666666777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557          101 VESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS  180 (545)
Q Consensus       101 lesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~  180 (545)
                      |..|+.+|..++.++.-+-.+.......-..  .......++-+.+..++++.+.....|.-.+..+-.+.+++......
T Consensus        88 v~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~--~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~  165 (319)
T PF09789_consen   88 VEELRQKLNEAQGDIKLLREKLARQRVGDEG--IGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDA  165 (319)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHhhhhhhcc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777776644232222222111111  11112226666677777777777777777777777777777777777


Q ss_pred             hHHHHHHHHHHHHH
Q 042557          181 SQTEHETYEAQIED  194 (545)
Q Consensus       181 ~Q~Ele~~r~Eie~  194 (545)
                      ++.....+..|+.-
T Consensus       166 yk~K~~RLN~ELn~  179 (319)
T PF09789_consen  166 YKCKAHRLNHELNY  179 (319)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777766666544

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.37  E-value=8.7  Score=46.05  Aligned_cols=79  Identities=18%  Similarity=0.302  Sum_probs=58.6

Q ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           36 ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE  114 (545)
Q Consensus        36 lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee  114 (545)
                      .||.-+.+.++........+...++.+..++......+..+...+...+.+...++..+......|..++..+..+...
T Consensus       685 ~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~  763 (1200)
T KOG0964|consen  685 ESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQ  763 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            6666677777777777777777777777777777777777777777777777777777777777777777777777665

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.32  E-value=2.6  Score=39.71  Aligned_cols=25  Identities=36%  Similarity=0.500  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           90 AKNETSEMAKTVESLKFELETVKEE  114 (545)
Q Consensus        90 ~ekEl~slqkelesLkseLe~~eee  114 (545)
                      ++.+..++..-|.+|..+|+.++..
T Consensus        15 ~~~e~dsle~~v~~LEreLe~~q~~   39 (140)
T PF10473_consen   15 SESEKDSLEDHVESLERELEMSQEN   39 (140)
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHh
Confidence            3333334444444444444444333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.31  E-value=4.8  Score=42.75  Aligned_cols=208  Identities=19%  Similarity=0.173  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHH
Q 042557          123 KLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAK-----EKLLSSQTEHETYEAQIEDLRI  197 (545)
Q Consensus       123 k~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeak-----ekl~~~Q~Ele~~r~Eie~Lq~  197 (545)
                      ..++.-+.+..++...+..++..++..+...++.+--|...+...........     .....+=..++.++..+..|+.
T Consensus        68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~  147 (319)
T PF09789_consen   68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLER  147 (319)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555555555555555554444444444332221111     1222222344555666666555


Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhh----------hhhHHHhhHhhHHHHHHHHHHHHHHH
Q 042557          198 VLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQK----------ELHLVDCVKKSEEENSSLEKEINRLV  267 (545)
Q Consensus       198 ~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~k----------E~~~~~~iK~~eee~~~~~~e~~~l~  267 (545)
                      -+...-+-    ..++..|.+.+++++.|+-.|+--.+.+-..+          +.-+-..|+..++|...++.-+.+..
T Consensus       148 d~qs~lDE----keEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK  223 (319)
T PF09789_consen  148 DLQSLLDE----KEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYK  223 (319)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444333    33567899999999999999996666444333          22233344444444444444444444


Q ss_pred             HHHHHHHHHHhhhH-H---HHHHHHHHH--HHHHHHH---------HHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHH
Q 042557          268 NLLKETEEDACATK-E---EEAQLRDSL--KEVEAEV---------IYMQETLGQARAESMKLKESFLDKETELQSVIQE  332 (545)
Q Consensus       268 e~l~~~E~~~~~~~-~---E~~~lr~~L--k~ae~e~---------~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~E  332 (545)
                      ..+-.  +.-..+. -   ....+-+.|  ||+..-+         ...-.++.++++-...|-+.+-||=-+|+--.+=
T Consensus       224 ~~le~--k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~indK~~al~Hqr~t  301 (319)
T PF09789_consen  224 SALER--KRKKGIIKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETINDKNLALQHQRKT  301 (319)
T ss_pred             HHHHh--hccccccccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33321  0101000 0   000011111  4444322         1223478899999999999999999999988888


Q ss_pred             HHHH
Q 042557          333 NEEL  336 (545)
Q Consensus       333 ne~L  336 (545)
                      |--|
T Consensus       302 NkIL  305 (319)
T PF09789_consen  302 NKIL  305 (319)
T ss_pred             HHHH
Confidence            8774

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.24  E-value=0.31  Score=56.68  Aligned_cols=55  Identities=27%  Similarity=0.290  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHhHHHhHHhhHHH------------HHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 042557          301 MQETLGQARAESMKLKESFLDKETE------------LQSVIQENEELRAREADSVKKVEELSSLLE  355 (545)
Q Consensus       301 a~e~~~ea~~e~~~Lk~~l~dkE~e------------Lq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~  355 (545)
                      ....+..++++|..|...+..++..            +.....|...|+.-=+.+.+++.-|+-+..
T Consensus       564 k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~  630 (722)
T PF05557_consen  564 KKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFK  630 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888888888888544321            234455666677766677777777776665

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.22  E-value=5.1  Score=42.55  Aligned_cols=19  Identities=16%  Similarity=0.310  Sum_probs=9.5

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 042557          252 SEEENSSLEKEINRLVNLL  270 (545)
Q Consensus       252 ~eee~~~~~~e~~~l~e~l  270 (545)
                      ...++..++..+..+...+
T Consensus       251 ~~~~l~~~~~~l~~~~~~l  269 (423)
T TIGR01843       251 AQARLAELRERLNKARDRL  269 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455555555555444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=95.21  E-value=4.2  Score=41.51  Aligned_cols=126  Identities=16%  Similarity=0.208  Sum_probs=59.8

Q ss_pred             hHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          229 DESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLK----ETEEDACATKEEEAQLRDSLKEVEAEVIYMQET  304 (545)
Q Consensus       229 ~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~----~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~  304 (545)
                      .+++..+.+-..+  .|..+-...+.|+..++.=+++....+.    ..+..+..+++-.......|..+..-+++|...
T Consensus       130 ~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~  207 (264)
T PF06008_consen  130 AEAQRMLEEMRKR--DFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNK  207 (264)
T ss_pred             HHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344443333  3555555555555555554444444432    122222233333444444444444444555555


Q ss_pred             HHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 042557          305 LGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEE  356 (545)
Q Consensus       305 ~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~e  356 (545)
                      ..++..-|..-...+.+...-.+.|...+..+...=..|...+.....++..
T Consensus       208 ~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~~ll~~  259 (264)
T PF06008_consen  208 TREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQANDLLQE  259 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555444444444445555555543

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=95.21  E-value=7  Score=44.03  Aligned_cols=197  Identities=23%  Similarity=0.301  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHH
Q 042557          159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK-YESMLDDAKHEIGLLTNIIKEAKDESKISKAE  237 (545)
Q Consensus       159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k-~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~  237 (545)
                      ++=..|..+....+....+==..  .--++.+++.+|.-.|.....- -+..||+|+.++.-+-..++.+=.-++.-..+
T Consensus       226 ~lP~ql~~Lk~Gyr~m~~~gY~l--~~~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA  303 (570)
T COG4477         226 ELPGQLQDLKAGYRDMKEEGYHL--EHVNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEA  303 (570)
T ss_pred             hchHHHHHHHHHHHHHHHccCCc--ccccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555554431111  1123344455544444322221 13346666666655555555544444433332


Q ss_pred             HHh---hhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          238 WEQ---KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATK---EEEAQLRDSLKEVEAEVIYMQETLGQARAE  311 (545)
Q Consensus       238 ~~~---kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~---~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e  311 (545)
                      -+.   +=..+-..+.+..+.+.-++.+++.+..++..+|.++...+   .+...+...+-.+-.....-.-+-.++...
T Consensus       304 ~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~  383 (570)
T COG4477         304 KNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDN  383 (570)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            222   22334567788889999999999999999999999876554   455555555544444444444444555555


Q ss_pred             HHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 042557          312 SMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEA  357 (545)
Q Consensus       312 ~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea  357 (545)
                      ...|...|.+.+..--.++..+-.||-=|..|+....-+.+-+.+.
T Consensus       384 l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei  429 (570)
T COG4477         384 LEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI  429 (570)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666666678888888887777666666554

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.21  E-value=7.9  Score=44.64  Aligned_cols=84  Identities=19%  Similarity=0.220  Sum_probs=48.0

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHH
Q 042557          247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETEL  326 (545)
Q Consensus       247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eL  326 (545)
                      +.+..+-.++..+..+++.+...++.+.     ..+....+...+..+..++..++..++....+...++..+...+..+
T Consensus       391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~-----~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  465 (650)
T TIGR03185       391 DAKSQLLKELRELEEELAEVDKKISTIP-----SEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL  465 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444321     12455666666677777777777777776666666776666666666


Q ss_pred             HHHHHHHHH
Q 042557          327 QSVIQENEE  335 (545)
Q Consensus       327 q~i~~Ene~  335 (545)
                      ..+......
T Consensus       466 ~~~~~~~~~  474 (650)
T TIGR03185       466 DEKTKQKIN  474 (650)
T ss_pred             HHHHHHHHh
Confidence            655544443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=95.09  E-value=11  Score=45.46  Aligned_cols=64  Identities=11%  Similarity=0.115  Sum_probs=25.0

Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKF  106 (545)
Q Consensus        43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLks  106 (545)
                      ..+..+.....-...+++.|+..+..|..+.+.+...++-....-...+-+-.+++.+.+.|.+
T Consensus       308 qkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts  371 (1195)
T KOG4643|consen  308 QKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS  371 (1195)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh
Confidence            3333333333333333444444433333333333333333222222223334455555555555

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=95.08  E-value=3.2  Score=48.05  Aligned_cols=158  Identities=13%  Similarity=0.143  Sum_probs=110.3

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           39 DAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQA  118 (545)
Q Consensus        39 ~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el  118 (545)
                      -.+...+....-++..+...+..|+..+....+.-...+..+......|...+.+.-.-......|...|..-...+.+.
T Consensus        31 ~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~  110 (916)
T KOG0249|consen   31 PELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQN  110 (916)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchh
Confidence            45667777778888888888999999998888877778888888888888888887777777777777777766667766


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 042557          119 LNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIV  198 (545)
Q Consensus       119 ~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~  198 (545)
                      .++...+...++-+..++..... .+.+           .++.+.|..--+++.-+++.......-+..+..+++++.+.
T Consensus       111 eekn~slqerLelaE~~l~qs~r-ae~l-----------peveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~nae  178 (916)
T KOG0249|consen  111 EEKNRSLQERLELAEPKLQQSLR-AETL-----------PEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAE  178 (916)
T ss_pred             HHhhhhhhHHHHHhhHhhHhHHh-hhhh-----------hhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            67667777766666666555444 3333           33333333434444444555555555666777778888888


Q ss_pred             HHHHHHHHHH
Q 042557          199 LKATNEKYES  208 (545)
Q Consensus       199 L~~aE~k~~~  208 (545)
                      |..|..+.+.
T Consensus       179 L~rarqreem  188 (916)
T KOG0249|consen  179 LQRARQREKM  188 (916)
T ss_pred             HHHHHHHHHh
Confidence            8888877663

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.95  E-value=0.0068  Score=70.11  Aligned_cols=43  Identities=21%  Similarity=0.230  Sum_probs=0.0

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 042557           39 DAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLD   81 (545)
Q Consensus        39 ~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~le   81 (545)
                      ..+..+++.++..+.++......+..++..+++++..++...+
T Consensus       242 ~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~  284 (713)
T PF05622_consen  242 ADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENE  284 (713)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555544444454454455554444444443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=94.93  E-value=15  Score=46.25  Aligned_cols=76  Identities=13%  Similarity=0.183  Sum_probs=43.0

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           41 VMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKA--DLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA  116 (545)
Q Consensus        41 ~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~--~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~  116 (545)
                      +..++..+...+..+..++..+..++..|..+...+..  ++..+-..+......+......+......+........
T Consensus       747 l~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~  824 (1353)
T TIGR02680       747 LDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWK  824 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33555556666666666666666666666665555543  34444455555555555555555555555555544433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.89  E-value=9.8  Score=44.04  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHhHHHHHHHHHHHHHHHHhHhHHHH
Q 042557          160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKY----ESMLDDAKHEIGLLTNIIKEAKDESKISK  235 (545)
Q Consensus       160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~----~~~l~ea~~e~~~lkk~~E~~~~E~e~s~  235 (545)
                      +..++.-+.+++...+.-+...+.-++.+....-.+++++..|.--+    +.-.++|+.+-.-|.-.|+-++--+-..-
T Consensus       521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E  600 (961)
T KOG4673|consen  521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE  600 (961)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777788888888888888888888888888888887766533    22244666666665555555443332222


Q ss_pred             HHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 042557          236 AEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEE  283 (545)
Q Consensus       236 ~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E  283 (545)
                      -..-.+|--              ++-+|..|.--|.++|+||+.+..+
T Consensus       601 q~aarrEd~--------------~R~Ei~~LqrRlqaaE~R~eel~q~  634 (961)
T KOG4673|consen  601 QQAARREDM--------------FRGEIEDLQRRLQAAERRCEELIQQ  634 (961)
T ss_pred             HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            222233322              2334445555555666666555544

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.87  E-value=6.2  Score=41.91  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042557          167 VSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKAT  202 (545)
Q Consensus       167 ~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~a  202 (545)
                      ...++..++..+...+.++..++.++..++..+...
T Consensus       201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~  236 (423)
T TIGR01843       201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQI  236 (423)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.84  E-value=11  Score=44.39  Aligned_cols=59  Identities=19%  Similarity=0.192  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhc
Q 042557          301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKK  361 (545)
Q Consensus       301 a~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~~~~  361 (545)
                      ...++..-+.+|..|+-.-.+.|++=-.  =.+......=.+-.+++.+|..-.++.-..+
T Consensus       890 l~ka~~~~k~~nl~lki~s~kqeqee~~--v~~~~~~~~i~alk~~l~dL~q~~eeie~e~  948 (970)
T KOG0946|consen  890 LSKALKTVKSENLSLKIVSNKQEQEELL--VLLADQKEKIQALKEALEDLNQPVEEIEDEK  948 (970)
T ss_pred             HHHHHHHhhcccchhcccchhhhHHHHH--HHHhhHHHHHHHHHHHHHHhCCChhhHHhhh
Confidence            3444555566777777777777665222  2234444444556666777777776655443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.82  E-value=4.6  Score=39.92  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 042557           54 DAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLL  133 (545)
Q Consensus        54 eaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~  133 (545)
                      ++.+.|..|+-....|..++..++       ..+..++...+.+..++..|+..+..+.    ++....+.+..++++|.
T Consensus         5 dL~~~v~dL~~~n~~L~~en~kL~-------~~ve~~ee~na~L~~e~~~L~~q~~s~Q----qal~~aK~l~eEledLk   73 (193)
T PF14662_consen    5 DLLSCVEDLQLNNQKLADENAKLQ-------RSVETAEEGNAQLAEEITDLRKQLKSLQ----QALQKAKALEEELEDLK   73 (193)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            455566666665555555444444       4445555556666666666666666542    46666677777777776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          134 EEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAR  172 (545)
Q Consensus       134 eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~e  172 (545)
                      .-...+..+-..+..+-....+..-.|.+.+..+..+-.
T Consensus        74 ~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~  112 (193)
T PF14662_consen   74 TLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENG  112 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666555555444444433333333444444444443333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=94.76  E-value=12  Score=44.44  Aligned_cols=122  Identities=17%  Similarity=0.175  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042557            9 LVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHS   88 (545)
Q Consensus         9 Ll~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~   88 (545)
                      +..|+...--.|++-...|+++..--.--+.-...++...+...++...+...|+..    ..+...-..+++.+...+.
T Consensus       338 ~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~e----laql~a~r~q~eka~~~~e  413 (980)
T KOG0980|consen  338 LSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNE----LAQLLASRTQLEKAQVLVE  413 (980)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            334444444444444445555443322222223333333333333333333333333    3333334556666665566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557           89 MAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLE  134 (545)
Q Consensus        89 ~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~e  134 (545)
                      .++......+...+.++..+..+...+..++.+.....-++.--..
T Consensus       414 e~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~  459 (980)
T KOG0980|consen  414 EAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ  459 (980)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777777777777777777777766555444443333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=94.76  E-value=12  Score=44.43  Aligned_cols=126  Identities=14%  Similarity=0.259  Sum_probs=62.6

Q ss_pred             hhHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 042557           36 ESLDAVMRQLEGNNDKLH----DAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFE---L  108 (545)
Q Consensus        36 lSL~l~t~eLE~lk~~Le----eaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkse---L  108 (545)
                      ..+.....++.+++..+.    ++..-|..++.++..++.+....+...++...+-+....++..+...-..+...   +
T Consensus       333 ~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~  412 (980)
T KOG0980|consen  333 LQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLV  412 (980)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556666655554    445555556666666655555444444444433333333333322222222211   2


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          109 ETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLA  161 (545)
Q Consensus       109 e~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa  161 (545)
                      +..+.......++..++...+..+......+..-......+++....+++++.
T Consensus       413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~  465 (980)
T KOG0980|consen  413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVE  465 (980)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            33333333345555555566666666666666666666666666666655433

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=94.70  E-value=5.1  Score=39.92  Aligned_cols=51  Identities=24%  Similarity=0.268  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 042557          136 KHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHE  186 (545)
Q Consensus       136 l~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele  186 (545)
                      +..+..+++.++.++..++...+..+..+..=---=.+.++++..+|..|.
T Consensus       133 ~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ  183 (202)
T PF06818_consen  133 LGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQ  183 (202)
T ss_pred             chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555555555555544444444444333333455666666655554

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=94.34  E-value=8  Score=40.64  Aligned_cols=202  Identities=16%  Similarity=0.203  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 042557           18 EELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNE   93 (545)
Q Consensus        18 ~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekE   93 (545)
                      +.+...-+...+.-++..    -.+.-+..+|..+...-.-+++...--+.....|+++|..+...|-.+-...+..+.-
T Consensus        34 ei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~s  113 (305)
T PF14915_consen   34 EILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTS  113 (305)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence            344444444555555554    3445566666666666666777666666666667777766666665555555444333


Q ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           94 TSEMAKTVESLKFEL----ETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSV  169 (545)
Q Consensus        94 l~slqkelesLkseL----e~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~  169 (545)
                      -+.+.-.+..-+.+-    +.+.-+++.+..+..-++.++.....+.+.+..+|-..++.+-.-.-+++.++-.|.....
T Consensus       114 krdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~  193 (305)
T PF14915_consen  114 KRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQC  193 (305)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333222    2223336667777888999999999999999999999988887666677888888888888


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHhHHHHHHH
Q 042557          170 EAREAKEKLLSSQTEHETYEAQIEDLRIVL---KATNEKYESMLDDAKHEIGL  219 (545)
Q Consensus       170 E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L---~~aE~k~~~~l~ea~~e~~~  219 (545)
                      ...+++.-+..-+..+..+-..-+.+.-.|   ..-..=++--|++|....+.
T Consensus       194 q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~  246 (305)
T PF14915_consen  194 QIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN  246 (305)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888877777777777666655554444433   22233344445555444443

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=94.23  E-value=5.5  Score=38.26  Aligned_cols=114  Identities=17%  Similarity=0.138  Sum_probs=56.8

Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042557           43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQK-ADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNN  121 (545)
Q Consensus        43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le-~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ek  121 (545)
                      .+++.++..+..+..++..++.++...+.--..+. .+++.++-+.......+.....+|..|+..+...-..+....++
T Consensus         6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keK   85 (177)
T PF13870_consen    6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEK   85 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555666666666666655554222222 45555555555555555555555555555554444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          122 EKLAASSVQNLLEEKHKLINELENSREEEEKSKKA  156 (545)
Q Consensus       122 Ek~lsseIe~L~eel~kl~~ELE~~~~eeEkekka  156 (545)
                      ...+..++..+..++......+..++..+..++..
T Consensus        86 l~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~  120 (177)
T PF13870_consen   86 LHFLSEELERLKQELKDREEELAKLREELYRVKKE  120 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444433

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.18  E-value=6.8  Score=39.20  Aligned_cols=42  Identities=14%  Similarity=0.246  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          164 LHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK  205 (545)
Q Consensus       164 L~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k  205 (545)
                      |..++.....+..++..++.-+..++.--+.|+..+.+...+
T Consensus        85 L~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~  126 (207)
T PF05010_consen   85 LNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEER  126 (207)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            333333333444444444444555544444444444443333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.07  E-value=2.3  Score=44.06  Aligned_cols=61  Identities=30%  Similarity=0.462  Sum_probs=45.2

Q ss_pred             HHHHHH--------HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 042557           10 VEEWKI--------RVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLE   70 (545)
Q Consensus        10 l~Evkk--------ql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE   70 (545)
                      +.||+.        ++..||.|+++.++=+.-+.+-|.++..-|..-+...+.-..++..|+.....|-
T Consensus         5 ~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~   73 (307)
T PF10481_consen    5 VEEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLM   73 (307)
T ss_pred             HhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH
Confidence            567764        8899999999999888877777777777777777777777777776666555443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=93.98  E-value=13  Score=41.76  Aligned_cols=44  Identities=25%  Similarity=0.358  Sum_probs=30.8

Q ss_pred             HHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHH
Q 042557          306 GQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEE  349 (545)
Q Consensus       306 ~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~E  349 (545)
                      .+...-...|.+.|.-|-+.|-.+..|.-.|+..=++....+.+
T Consensus       388 ~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~  431 (511)
T PF09787_consen  388 NELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKE  431 (511)
T ss_pred             HhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence            35556667777777777777777777777777776666655554

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=93.95  E-value=9.6  Score=40.07  Aligned_cols=86  Identities=19%  Similarity=0.319  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHH
Q 042557          258 SLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELR  337 (545)
Q Consensus       258 ~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr  337 (545)
                      .+...+..|.+....-=.+...+-.+..++|..-..+=.++..+...+.+..-+.-.++..+++.+..|..+....-..+
T Consensus       176 e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~  255 (294)
T COG1340         176 EIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAK  255 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444333333344455556666777777777777788888888888888888888888888888887777765


Q ss_pred             hhHHHH
Q 042557          338 AREADS  343 (545)
Q Consensus       338 ~~Ea~a  343 (545)
                      ....+-
T Consensus       256 ~~~~~e  261 (294)
T COG1340         256 RREKRE  261 (294)
T ss_pred             HHHHHH
Confidence            555544

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=93.93  E-value=22  Score=44.13  Aligned_cols=84  Identities=23%  Similarity=0.262  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHH--HHhhHHHH
Q 042557          266 LVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEE--LRAREADS  343 (545)
Q Consensus       266 l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~--Lr~~Ea~a  343 (545)
                      +..++...++++..+..++....  ......+..-..+..+-+.++...+-......++.....++++..  .+.++...
T Consensus      1013 l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~ny 1090 (1294)
T KOG0962|consen 1013 LERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNY 1090 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHH
Confidence            33334444444333333333333  223334444455555555666666666666777777777777773  66666666


Q ss_pred             HHhHHHHH
Q 042557          344 VKKVEELS  351 (545)
Q Consensus       344 ~~~i~EL~  351 (545)
                      ++.+-++.
T Consensus      1091 r~~~ie~~ 1098 (1294)
T KOG0962|consen 1091 RKALIELK 1098 (1294)
T ss_pred             HHHHHHHH
Confidence            66666654

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.92  E-value=12  Score=41.16  Aligned_cols=20  Identities=15%  Similarity=0.046  Sum_probs=9.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 042557          252 SEEENSSLEKEINRLVNLLK  271 (545)
Q Consensus       252 ~eee~~~~~~e~~~l~e~l~  271 (545)
                      +..++.++..++.+.++.-.
T Consensus       236 L~~~Ias~e~~aA~~re~~a  255 (420)
T COG4942         236 LKNEIASAEAAAAKAREAAA  255 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44455555544444444333

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.86  E-value=20  Score=43.48  Aligned_cols=47  Identities=17%  Similarity=0.112  Sum_probs=30.7

Q ss_pred             HHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557           30 LKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQK   77 (545)
Q Consensus        30 y~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le   77 (545)
                      +++-.+-|+. +..+|+.++.....+.+..+..-.+...+..+....+
T Consensus       148 LFEEISgSiE-lK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK  194 (1141)
T KOG0018|consen  148 LFEEISGSIE-LKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAK  194 (1141)
T ss_pred             HHHHHhhhhh-hhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHH
Confidence            3334444443 3467888888888888888888888777766553333

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.81  E-value=15  Score=41.73  Aligned_cols=317  Identities=20%  Similarity=0.218  Sum_probs=151.9

Q ss_pred             ChhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 042557            1 MAESYARNLVEEWKIRVEELEMQ---AEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQ-   76 (545)
Q Consensus         1 ~~e~RV~DLl~Evkkql~sLE~Q---AeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~l-   76 (545)
                      ||++-|.++=.||++=-+.|.-=   --+|-.|==.-.....-+..+|+.+...|.-+..++..+++-.....+.-... 
T Consensus         5 ~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~   84 (772)
T KOG0999|consen    5 MAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVA   84 (772)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            67888888888887644443311   11111222111134445566677777777777777777776665554422222 


Q ss_pred             -------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           77 -------KADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREE  149 (545)
Q Consensus        77 -------e~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~e  149 (545)
                             ++=|+++-..-.-.=..+..++.++-.++..+..++++...+......+...-..+..+..++..+|..++-+
T Consensus        85 ~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfR  164 (772)
T KOG0999|consen   85 RDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFR  164 (772)
T ss_pred             ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence                   1112222111111222234445555555555555555544444444444444445555777788888888776


Q ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHhHHH---H
Q 042557          150 EEKSKKAMESLAS---ALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL-------KATNEKYESMLDDAKH---E  216 (545)
Q Consensus       150 eEkekka~EeLa~---AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L-------~~aE~k~~~~l~ea~~---e  216 (545)
                      +...-..+-+|..   .|...=+-+++-.-+|..++.++..+..+++=|++.+       +-|+.-++.+|.-+..   +
T Consensus       165 E~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReq  244 (772)
T KOG0999|consen  165 EARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQ  244 (772)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            6555444433321   1222112222222223333333333333333344444       3455566666655443   3


Q ss_pred             HHHHHHHHHHHHhHhHHHH--------HHHH---------hhh--hhHHHhhHhhHHH--------HHHH-----HHHHH
Q 042557          217 IGLLTNIIKEAKDESKISK--------AEWE---------QKE--LHLVDCVKKSEEE--------NSSL-----EKEIN  264 (545)
Q Consensus       217 ~~~lkk~~E~~~~E~e~s~--------~~~~---------~kE--~~~~~~iK~~eee--------~~~~-----~~e~~  264 (545)
                      .-.+++.+.+-++--.++.        +...         .-+  .|   .++++...        ++.+     -.++.
T Consensus       245 k~alkkEL~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~---~l~kl~~Dl~tel~~p~sDl~sel~iseiq  321 (772)
T KOG0999|consen  245 KNALKKELSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHG---ALKKLASDLFTELQGPVSDLFSELNISEIQ  321 (772)
T ss_pred             HHHHHHHHHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcc---hhhhccchhhhhccCchhHHHHHHHHHHHH
Confidence            4456666666443322111        1000         000  00   01111111        1222     23447


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHhHH
Q 042557          265 RLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESM---KLKESFL  320 (545)
Q Consensus       265 ~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~---~Lk~~l~  320 (545)
                      .|..+|+-.|++-..+-.-+..-...|.+-+..+.++.+++-.+..-+.   +|+++.-
T Consensus       322 kLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~rlq~~~d  380 (772)
T KOG0999|consen  322 KLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRRLQDSKD  380 (772)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence            7888888887776666555555555556667777777777776644433   4444443

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=93.75  E-value=7.9  Score=38.45  Aligned_cols=119  Identities=24%  Similarity=0.332  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557           55 AESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLE  134 (545)
Q Consensus        55 aesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~e  134 (545)
                      +..+++.|..++..++-++.+++..+..+.+.|...++..-.--.-+                     +-+......+.+
T Consensus         2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~---------------------Kv~enr~~kdEE   60 (205)
T KOG1003|consen    2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGM---------------------KVIENRAQKLEE   60 (205)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHH---------------------HHHHHHHHhhHH
Confidence            35677888888888877777777777776666665554432222222                     222233333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557          135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED  194 (545)
Q Consensus       135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~  194 (545)
                      +++.+...|..++...+..-..+++.+-.|-=++..++.+.++.........++-.+...
T Consensus        61 ~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~  120 (205)
T KOG1003|consen   61 KMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRI  120 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444444444444444444444333333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=93.65  E-value=0.019  Score=66.45  Aligned_cols=46  Identities=17%  Similarity=0.225  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHH
Q 042557          280 TKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETE  325 (545)
Q Consensus       280 ~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~e  325 (545)
                      ++..++.++.-+-.+++.+.+....+..+..++..|.+.+.-.+.+
T Consensus       361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~e  406 (713)
T PF05622_consen  361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEE  406 (713)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555455555555555555555555555555554433333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.58  E-value=6.3  Score=36.78  Aligned_cols=64  Identities=19%  Similarity=0.297  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 042557          161 ASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNII  224 (545)
Q Consensus       161 a~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~  224 (545)
                      ...+..+....+.+...+...+..+...+.++.+++..+....+.|...+..=..|+..|++.|
T Consensus        86 ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen   86 ERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333444445555555556666667777888888888888888888877766667777777654

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.42  E-value=11  Score=39.93  Aligned_cols=49  Identities=12%  Similarity=0.185  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          127 SSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAK  175 (545)
Q Consensus       127 seIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeak  175 (545)
                      .+|.....++..+..++..+...++.......++...+.+++.-.++-+
T Consensus       218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r  266 (312)
T smart00787      218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR  266 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3334444444444444444444444444444555555555555443333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.20  E-value=13  Score=39.29  Aligned_cols=10  Identities=20%  Similarity=0.421  Sum_probs=4.0

Q ss_pred             HHHHHHHHHH
Q 042557          255 ENSSLEKEIN  264 (545)
Q Consensus       255 e~~~~~~e~~  264 (545)
                      ++..++..++
T Consensus       277 Ev~~Lk~~~~  286 (325)
T PF08317_consen  277 EVKRLKAKVD  286 (325)
T ss_pred             HHHHHHHHHH
Confidence            3334444433

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.16  E-value=6  Score=36.34  Aligned_cols=51  Identities=22%  Similarity=0.307  Sum_probs=43.6

Q ss_pred             HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557          246 VDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA  296 (545)
Q Consensus       246 ~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~  296 (545)
                      ..++..++.++..++..++-+++.|+.+..++..++.....|++.++.-..
T Consensus        67 ~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~  117 (120)
T PF12325_consen   67 KKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQID  117 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566889999999999999999999999999999999999999876544

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=93.12  E-value=5.7  Score=42.87  Aligned_cols=100  Identities=15%  Similarity=0.254  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           82 ESERKHSMAKNETSEMAKTVESLKFELETVKEE----KAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAM  157 (545)
Q Consensus        82 E~k~eL~~~ekEl~slqkelesLkseLe~~eee----l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~  157 (545)
                      +=+.++.++..-.......+...+..|..+..+    +.....+|+.+..+++.+..+......+|..++.+....-..+
T Consensus       217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V  296 (359)
T PF10498_consen  217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGV  296 (359)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            334455555555555555555555555555555    3445677788888888888888777777777777766666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 042557          158 ESLASALHEVSVEAREAKEKLLSS  181 (545)
Q Consensus       158 EeLa~AL~E~e~E~eeakekl~~~  181 (545)
                      .+++..|.+++.++++.+......
T Consensus       297 ~~~t~~L~~IseeLe~vK~emeer  320 (359)
T PF10498_consen  297 SERTRELAEISEELEQVKQEMEER  320 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            677777777777666666655544

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.97  E-value=7.2  Score=37.55  Aligned_cols=31  Identities=16%  Similarity=0.367  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 042557           53 HDAESEIAALKEKVGLLEMTIGRQKADLDES   83 (545)
Q Consensus        53 eeaesEI~~LqeKve~LE~ev~~le~~leE~   83 (545)
                      .+.+..+..++.++..++..+..+...+...
T Consensus        84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~  114 (191)
T PF04156_consen   84 SELQQQLQQLQEELDQLQERIQELESELEKL  114 (191)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK11281 hypothetical protein; Provisional

Probab=92.61  E-value=33  Score=42.39  Aligned_cols=16  Identities=31%  Similarity=0.198  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 042557          184 EHETYEAQIEDLRIVL  199 (545)
Q Consensus       184 Ele~~r~Eie~Lq~~L  199 (545)
                      |+..+..++.-++..|
T Consensus       200 e~~~l~~~~~~~~~~l  215 (1113)
T PRK11281        200 EQALLNAQNDLQRKSL  215 (1113)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333344444444433

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=92.48  E-value=38  Score=42.74  Aligned_cols=86  Identities=13%  Similarity=0.205  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 042557           12 EWKIRVEELEMQAEEAH----KLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKH   87 (545)
Q Consensus        12 Evkkql~sLE~QAeKA~----ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL   87 (545)
                      +++.++..|+.....+.    .|..+....+......|-.....+..+..++..+...+......+..++..+..+..++
T Consensus       234 ~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~  313 (1353)
T TIGR02680       234 EYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREA  313 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444433    34445555555555566666666666666666666666666555555555555555555


Q ss_pred             HHHHHHHHHH
Q 042557           88 SMAKNETSEM   97 (545)
Q Consensus        88 ~~~ekEl~sl   97 (545)
                      ...+.++..+
T Consensus       314 ~~l~~~~~~l  323 (1353)
T TIGR02680       314 DALRTRLEAL  323 (1353)
T ss_pred             HHHHHHHHHh
Confidence            5555554443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.33  E-value=16  Score=38.01  Aligned_cols=65  Identities=18%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           47 GNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETV  111 (545)
Q Consensus        47 ~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~  111 (545)
                      .....|.++......++.++..|..+|..+...+++.+.++...+.++..++.+|..++..|..-
T Consensus        35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r   99 (265)
T COG3883          35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER   99 (265)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444555555555555555555555555555555555555443

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=92.19  E-value=24  Score=39.75  Aligned_cols=81  Identities=27%  Similarity=0.294  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 042557          127 SSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEV-----------SVEAREAKEKLLSSQTEHETYEAQIEDL  195 (545)
Q Consensus       127 seIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~-----------e~E~eeakekl~~~Q~Ele~~r~Eie~L  195 (545)
                      ..+.-+...++....++..++..--..-..-+.+...|+.-           +.++.+++......+.++..++.++..+
T Consensus       221 ~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l  300 (511)
T PF09787_consen  221 EQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQL  300 (511)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444555555433222223334444444441           1236777777777777777777777777


Q ss_pred             HHHHHHHHHHHH
Q 042557          196 RIVLKATNEKYE  207 (545)
Q Consensus       196 q~~L~~aE~k~~  207 (545)
                      .+-+.+.+..+.
T Consensus       301 ~~e~~d~e~~~~  312 (511)
T PF09787_consen  301 RAELQDLEAQLE  312 (511)
T ss_pred             HHHHHHHHHHHH
Confidence            777777777665

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.15  E-value=11  Score=36.25  Aligned_cols=38  Identities=24%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           77 KADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE  114 (545)
Q Consensus        77 e~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee  114 (545)
                      ..++.+.+..+....+++..++..+..+.+.+...+..
T Consensus        80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~  117 (191)
T PF04156_consen   80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKED  117 (191)
T ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555444444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=92.12  E-value=23  Score=39.51  Aligned_cols=21  Identities=33%  Similarity=0.444  Sum_probs=13.9

Q ss_pred             HHHhHHHhHHhhHHHHHHHHH
Q 042557          311 ESMKLKESFLDKETELQSVIQ  331 (545)
Q Consensus       311 e~~~Lk~~l~dkE~eLq~i~~  331 (545)
                      --....+++.|.+++|+....
T Consensus       595 fk~~IQssledl~~~l~k~~~  615 (622)
T COG5185         595 FKINIQSSLEDLENELGKVIE  615 (622)
T ss_pred             hhhhHHhhHHHHHHHHHHHHH
Confidence            334566777788887776543

>PF13514 AAA_27: AAA domain

Probab=92.08  E-value=37  Score=41.77  Aligned_cols=51  Identities=29%  Similarity=0.321  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 042557          163 ALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDA  213 (545)
Q Consensus       163 AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea  213 (545)
                      .|...-...+.....+...+..+..++.++..+...+...+..+..++..+
T Consensus       788 ~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a  838 (1111)
T PF13514_consen  788 ALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQA  838 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333333444444555566666666667777777777766666666555433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.00  E-value=14  Score=36.66  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 042557          189 EAQIEDLRIVLKATNEKYESMLDDAKH  215 (545)
Q Consensus       189 r~Eie~Lq~~L~~aE~k~~~~l~ea~~  215 (545)
                      ...+..|...|+..++.+..++-.+.-
T Consensus       149 EkKl~~l~~~lE~keaqL~evl~~~nl  175 (201)
T PF13851_consen  149 EKKLQALSEQLEKKEAQLNEVLAAANL  175 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            344445555665666655555555443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=91.88  E-value=35  Score=41.03  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=14.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHH
Q 042557            3 ESYARNLVEEWKIRVEELEMQAE   25 (545)
Q Consensus         3 e~RV~DLl~Evkkql~sLE~QAe   25 (545)
                      ..++.+++.+++.++..|+.++.
T Consensus       173 ~~~l~e~~~~~~~~~e~l~~~~~  195 (908)
T COG0419         173 SELLKEVIKEAKAKIEELEGQLS  195 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666666666

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.56  E-value=15  Score=36.33  Aligned_cols=102  Identities=16%  Similarity=0.249  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 042557           17 VEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSE   96 (545)
Q Consensus        17 l~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~s   96 (545)
                      +++|..+....++-.....--+.-...+-..+..-|..+..++..|+.++..+++    -+..+..++..+...++++..
T Consensus        29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k----dK~~L~~~k~rl~~~ek~l~~  104 (201)
T PF13851_consen   29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK----DKQSLQNLKARLKELEKELKD  104 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444455555555555555555555555554443    333444555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557           97 MAKTVESLKFELETVKEEKAQALNNE  122 (545)
Q Consensus        97 lqkelesLkseLe~~eeel~el~ekE  122 (545)
                      +.++-+.|...+..+..+...+..+-
T Consensus       105 Lk~e~evL~qr~~kle~ErdeL~~kf  130 (201)
T PF13851_consen  105 LKWEHEVLEQRFEKLEQERDELYRKF  130 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555544444443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.56  E-value=1.9  Score=42.14  Aligned_cols=72  Identities=19%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           37 SLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFEL  108 (545)
Q Consensus        37 SL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseL  108 (545)
                      .|...+..+..+...+......|..|+..+..|...+..+...+.+....+..+..|+..++-.+..+..++
T Consensus        96 ~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~  167 (194)
T PF08614_consen   96 QLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKL  167 (194)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=91.51  E-value=26  Score=38.76  Aligned_cols=16  Identities=31%  Similarity=0.480  Sum_probs=5.8

Q ss_pred             HHhhhhhhHHHHHHHH
Q 042557           44 QLEGNNDKLHDAESEI   59 (545)
Q Consensus        44 eLE~lk~~LeeaesEI   59 (545)
                      ++..++..|..++..+
T Consensus       169 ql~~~~~~L~~ae~~l  184 (498)
T TIGR03007       169 QIKTYEKKLEAAENRL  184 (498)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=91.43  E-value=29  Score=39.28  Aligned_cols=205  Identities=20%  Similarity=0.195  Sum_probs=105.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------------HHHHHHH
Q 042557           77 KADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKH------------KLINELE  144 (545)
Q Consensus        77 e~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~------------kl~~ELE  144 (545)
                      ..+.-++...|..+++.+-.++.-+..+.+=+..++..+=          .++.+|..-..            .+..+++
T Consensus       189 ~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP----------~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~  258 (570)
T COG4477         189 SGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELP----------GQLQDLKAGYRDMKEEGYHLEHVNIDSRLE  258 (570)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch----------HHHHHHHHHHHHHHHccCCcccccHHHHHH
Confidence            4556677777888888888888777777777766666521          22222222111            1223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 042557          145 NSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHE---TYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLT  221 (545)
Q Consensus       145 ~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele---~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lk  221 (545)
                      .++.++.....-+.  ...|.+++.+...+.+++..+-.=++   .++..+..+...|-..=.|.+.+..--..+|.+++
T Consensus       259 ~L~~~l~~~~~~l~--~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~  336 (570)
T COG4477         259 RLKEQLVENSELLT--QLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVK  336 (570)
T ss_pred             HHHHHHHHHHhHHH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333332221111  24456666666666666665543332   23334444444444443444444444444444444


Q ss_pred             HHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 042557          222 NIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYM  301 (545)
Q Consensus       222 k~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea  301 (545)
                      .++              .=.|.++ ..+++++.++.++...++.+.+.+..-+-.-..+++..+.++..|...+.+-..+
T Consensus       337 ~sY--------------~l~e~e~-~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~  401 (570)
T COG4477         337 ESY--------------RLAETEL-GSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKV  401 (570)
T ss_pred             HHh--------------ccChhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            443              3333333 2677888888888888765555555444444444444555555554444444444


Q ss_pred             HHHHHHH
Q 042557          302 QETLGQA  308 (545)
Q Consensus       302 ~e~~~ea  308 (545)
                      ++.+.-+
T Consensus       402 ~e~L~~L  408 (570)
T COG4477         402 QEHLTSL  408 (570)
T ss_pred             HHHHHHH
Confidence            4444443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=91.40  E-value=26  Score=38.68  Aligned_cols=32  Identities=13%  Similarity=0.171  Sum_probs=16.8

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 042557           41 VMRQLEGNNDKLHDAESEIAALKEKVGLLEMT   72 (545)
Q Consensus        41 ~t~eLE~lk~~LeeaesEI~~LqeKve~LE~e   72 (545)
                      ...++..+...+..+..++..++.++..+...
T Consensus       202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~  233 (498)
T TIGR03007       202 YYSEISEAQEELEAARLELNEAIAQRDALKRQ  233 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555555555555555555555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF13514 AAA_27: AAA domain

Probab=91.22  E-value=45  Score=41.04  Aligned_cols=10  Identities=30%  Similarity=0.428  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 042557          324 TELQSVIQEN  333 (545)
Q Consensus       324 ~eLq~i~~En  333 (545)
                      .+|.....++
T Consensus       947 a~l~~~~~~~  956 (1111)
T PF13514_consen  947 AELEELAEEW  956 (1111)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.63  E-value=14  Score=34.03  Aligned_cols=42  Identities=19%  Similarity=0.262  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          166 EVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE  207 (545)
Q Consensus       166 E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~  207 (545)
                      .+..++.+...++..+=.-+...-.+++.|++-+.+-..-|+
T Consensus        72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr  113 (120)
T PF12325_consen   72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR  113 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            444444455555555544455555566666666666555555

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.62  E-value=4.9  Score=42.50  Aligned_cols=78  Identities=24%  Similarity=0.357  Sum_probs=29.8

Q ss_pred             HHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 042557          206 YESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEA  285 (545)
Q Consensus       206 ~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~  285 (545)
                      ++..++.+..|.+.+..-+..+.            .....-..+.....++..+..+-.++...|...|.+...+..|..
T Consensus        14 l~~~~~~~~~E~~~Y~~fL~~l~------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~   81 (314)
T PF04111_consen   14 LDKQLEQAEKERDTYQEFLKKLE------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELE   81 (314)
T ss_dssp             ----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666666665555543            111222334556777777777777777777766666555555555


Q ss_pred             HHHHHHHHHH
Q 042557          286 QLRDSLKEVE  295 (545)
Q Consensus       286 ~lr~~Lk~ae  295 (545)
                      .|...+....
T Consensus        82 ~le~e~~~l~   91 (314)
T PF04111_consen   82 ELEEELEELD   91 (314)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5554444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=90.61  E-value=48  Score=40.25  Aligned_cols=24  Identities=21%  Similarity=0.216  Sum_probs=10.3

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHH
Q 042557           45 LEGNNDKLHDAESEIAALKEKVGL   68 (545)
Q Consensus        45 LE~lk~~LeeaesEI~~LqeKve~   68 (545)
                      |-..+..|.++...-..|.+....
T Consensus       176 ll~~h~eL~~lr~~e~~Le~~~~~  199 (1072)
T KOG0979|consen  176 LLQYHIELMDLREDEKSLEDKLTT  199 (1072)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444443333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.57  E-value=3.2  Score=41.38  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=46.6

Q ss_pred             HHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557          234 SKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL  291 (545)
Q Consensus       234 s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L  291 (545)
                      ....|+.+-.++...+..+...+..++.++.+|..++..+..++..+..++..+++..
T Consensus       112 ~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        112 IDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455777788888888888888888999999998888888888888888888777655

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=90.42  E-value=31  Score=37.75  Aligned_cols=104  Identities=19%  Similarity=0.253  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          100 TVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLL  179 (545)
Q Consensus       100 elesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~  179 (545)
                      ++.....+-+.++.+...+..+..++..++..++.+...+..+|..+..+.-........|.+.-+++...+.+.+.+..
T Consensus       110 El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~  189 (499)
T COG4372         110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVL  189 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555566677777777778888888888888888888777666555554445555555555555555555555


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH
Q 042557          180 SSQTEHETYEAQIEDLRIVLKATN  203 (545)
Q Consensus       180 ~~Q~Ele~~r~Eie~Lq~~L~~aE  203 (545)
                      ++...-..+..+...|...-..++
T Consensus       190 ~L~~r~~~ieQ~~~~la~r~~a~q  213 (499)
T COG4372         190 DLKLRSAQIEQEAQNLATRANAAQ  213 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555554444444444444333333

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=90.10  E-value=36  Score=40.16  Aligned_cols=18  Identities=28%  Similarity=0.287  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 042557           13 WKIRVEELEMQAEEAHKL   30 (545)
Q Consensus        13 vkkql~sLE~QAeKA~ky   30 (545)
                      .+++++.|.-|+..-++.
T Consensus       399 LrRrLrilnqqlreqe~~  416 (861)
T PF15254_consen  399 LRRRLRILNQQLREQEKA  416 (861)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            345555555555444333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=89.78  E-value=3.6  Score=41.64  Aligned_cols=64  Identities=27%  Similarity=0.306  Sum_probs=55.0

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557          275 EDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRA  338 (545)
Q Consensus       275 ~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~  338 (545)
                      ..++.+..|++.|+.-|...++++++.++++..+..++++|.+.+..+..+...+..-.++|--
T Consensus       142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~  205 (290)
T COG4026         142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP  205 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence            3445778899999999999999999999999999999999999999988887777766666543

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.66  E-value=8.1  Score=40.86  Aligned_cols=50  Identities=20%  Similarity=0.234  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE  207 (545)
Q Consensus       158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~  207 (545)
                      +.+...|..++.+.......-...-.....+..+..+..-.+...+..|.
T Consensus        74 ~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~  123 (314)
T PF04111_consen   74 EELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE  123 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444333333334444444444444444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=89.56  E-value=31  Score=36.50  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           56 ESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVES  103 (545)
Q Consensus        56 esEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkeles  103 (545)
                      ...++.|..+...+..+..++..++......+..+.++...++.++..
T Consensus        21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k   68 (309)
T PF09728_consen   21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSK   68 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666666666665555555555555554444444443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=89.56  E-value=27  Score=38.58  Aligned_cols=160  Identities=23%  Similarity=0.250  Sum_probs=89.0

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           72 TIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEK---LAASSVQNLLEEKHKLINELENSRE  148 (545)
Q Consensus        72 ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk---~lsseIe~L~eel~kl~~ELE~~~~  148 (545)
                      .+.++-.+++.    |..+++.+..+|+.++.-+.+.+++.-++-.+..+-.   .+.+--+++..+.-+  .||+.+|-
T Consensus       243 hv~km~kdle~----Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--kelE~lR~  316 (575)
T KOG4403|consen  243 HVNKMMKDLEG----LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KELEQLRV  316 (575)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HHHHHHHH
Confidence            35566666655    3467777788888888888888888777554544443   333333333333333  58888888


Q ss_pred             HHHHHHHHHHHHH-----HHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Q 042557          149 EEEKSKKAMESLA-----SALH-------EVSVEAREAKEKLLSSQTEHETYEAQIEDL-------RIVLKATNEKYESM  209 (545)
Q Consensus       149 eeEkekka~EeLa-----~AL~-------E~e~E~eeakekl~~~Q~Ele~~r~Eie~L-------q~~L~~aE~k~~~~  209 (545)
                      +++++.+.++.-.     .||+       +++...=+  -+.+.+...|..++..++.|       =.+|..|--.   .
T Consensus       317 ~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~--kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgs---s  391 (575)
T KOG4403|consen  317 ALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYN--KKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGS---S  391 (575)
T ss_pred             HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHhhcchheeeeecccc---c
Confidence            8888777766521     1111       22222111  11122222233333333332       2233333222   3


Q ss_pred             HHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhh
Q 042557          210 LDDAKHEIGLLTNIIKEAKDESKISKAEWEQKE  242 (545)
Q Consensus       210 l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE  242 (545)
                      +|+.-+-|-.+|+.+..+.+.+-+.+--|.+=|
T Consensus       392 lDdVD~kIleak~al~evtt~lrErl~RWqQIE  424 (575)
T KOG4403|consen  392 LDDVDHKILEAKSALSEVTTLLRERLHRWQQIE  424 (575)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777788888888888888888888887754

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=89.26  E-value=14  Score=39.82  Aligned_cols=55  Identities=22%  Similarity=0.273  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           96 EMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEE  150 (545)
Q Consensus        96 slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~ee  150 (545)
                      .+...+..+..+++.+...+..+..+.+.++.-+..++..++++..+|+..+.+.
T Consensus       263 ~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em  317 (359)
T PF10498_consen  263 YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM  317 (359)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666677777777777777778888888888888888887777777764443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.24  E-value=41  Score=39.63  Aligned_cols=13  Identities=38%  Similarity=0.419  Sum_probs=5.1

Q ss_pred             hHHHHHHHHHHHH
Q 042557          252 SEEENSSLEKEIN  264 (545)
Q Consensus       252 ~eee~~~~~~e~~  264 (545)
                      .-+++..+-.++.
T Consensus       697 ~~~~I~~~v~~ik  709 (717)
T PF10168_consen  697 QGEEIDELVKQIK  709 (717)
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444433333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=89.17  E-value=54  Score=38.78  Aligned_cols=193  Identities=18%  Similarity=0.196  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042557          134 EEKHKLINELENSREEEEK---SKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESML  210 (545)
Q Consensus       134 eel~kl~~ELE~~~~eeEk---ekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l  210 (545)
                      .++.+|..|++.+..-+=.   .....-+.+.||.-+..|--++|.++-.+-.-|   |.+ ++..-.-..-.-.|++  
T Consensus       356 sE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqql---req-e~~~k~~~~~~~n~El--  429 (861)
T PF15254_consen  356 SEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQL---REQ-EKAEKTSGSQDCNLEL--  429 (861)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHH---HHH-HhhcccCCCcccchhh--
Confidence            4788889998888666532   223335566777776666666665554442222   111 1100000000000000  


Q ss_pred             HhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHH
Q 042557          211 DDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEI----NRLVNLLKETEEDACATKEEEAQ  286 (545)
Q Consensus       211 ~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~----~~l~e~l~~~E~~~~~~~~E~~~  286 (545)
                          .-..+|-..++..-.|.-.+.+....++.++++.|-...+|++.+...+    ..|++.-+       .-..|..+
T Consensus       430 ----~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq-------~~d~e~~r  498 (861)
T PF15254_consen  430 ----FSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQ-------QFDIETTR  498 (861)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHH
Confidence                1122333344444444445555566666666666555555555444443    22222222       23345666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHH
Q 042557          287 LRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADS  343 (545)
Q Consensus       287 lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a  343 (545)
                      ++--+.+|...+.-.+-.++.+..+|+-|.-.|+-++.++--+..=+-.|+.+-++-
T Consensus       499 ik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l  555 (861)
T PF15254_consen  499 IKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKL  555 (861)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666667777777777777777777888777777777777777776666677666554

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=89.06  E-value=53  Score=38.50  Aligned_cols=16  Identities=25%  Similarity=0.368  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q 042557          192 IEDLRIVLKATNEKYE  207 (545)
Q Consensus       192 ie~Lq~~L~~aE~k~~  207 (545)
                      +.+|+.....++.-|.
T Consensus       378 ~~~L~Re~~~~~~~Y~  393 (754)
T TIGR01005       378 LDALQRDAAAKRQLYE  393 (754)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444444444444

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=88.98  E-value=32  Score=35.94  Aligned_cols=106  Identities=21%  Similarity=0.290  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhH---HH
Q 042557           52 LHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA----QALNNE---KL  124 (545)
Q Consensus        52 LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~----el~ekE---k~  124 (545)
                      +.+++.++..|++...+-.-++..+++-++..++.......++..++.+..+|....+.++....    .+.-++   .-
T Consensus        20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~   99 (307)
T PF10481_consen   20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF   99 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence            34444555555554444444444555555555555555555555555555555544444433311    122222   22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          125 AASSVQNLLEEKHKLINELENSREEEEKSKKAM  157 (545)
Q Consensus       125 lsseIe~L~eel~kl~~ELE~~~~eeEkekka~  157 (545)
                      +..++......+.++..+|..++.+++++..+.
T Consensus       100 lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~  132 (307)
T PF10481_consen  100 LEGQLNSCKKQIEKLEQELKRCKSELERSQQAA  132 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            233333333444455555555555555555443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=88.51  E-value=29  Score=34.76  Aligned_cols=20  Identities=10%  Similarity=0.335  Sum_probs=10.9

Q ss_pred             HHHHHHHHhHhHHHHHHHHh
Q 042557          221 TNIIKEAKDESKISKAEWEQ  240 (545)
Q Consensus       221 kk~~E~~~~E~e~s~~~~~~  240 (545)
                      +...+....-|+.-.--|..
T Consensus       151 r~~~e~q~~~Fe~ER~~W~e  170 (202)
T PF06818_consen  151 RQRREEQRSSFEQERRTWQE  170 (202)
T ss_pred             HHhHHHHHHHHHHHHHHHHH
Confidence            34444455555556666665

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>smart00787 Spc7 Spc7 kinetochore protein

Probab=88.43  E-value=37  Score=36.00  Aligned_cols=45  Identities=18%  Similarity=0.151  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 042557          184 EHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAK  228 (545)
Q Consensus       184 Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~  228 (545)
                      .++....+...++..+.+|+..+..---=...|+..|+..+..+.
T Consensus       240 ~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le  284 (312)
T smart00787      240 KIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ  284 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            333334444444444445544333222234467777777666543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=88.32  E-value=32  Score=35.13  Aligned_cols=52  Identities=21%  Similarity=0.245  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          157 MESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYES  208 (545)
Q Consensus       157 ~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~  208 (545)
                      -..|...+.++...+..+.........+...++.++...+..+..+..++-.
T Consensus        77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~  128 (246)
T PF00769_consen   77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLE  128 (246)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667888888888888888888888788888888888888777777777543

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.21  E-value=26  Score=35.64  Aligned_cols=39  Identities=21%  Similarity=0.304  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 042557          160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIV  198 (545)
Q Consensus       160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~  198 (545)
                      |...++.+..+.+..+..+..++.++..++.++.+++..
T Consensus        65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444444444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=87.99  E-value=11  Score=39.84  Aligned_cols=90  Identities=19%  Similarity=0.175  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042557            9 LVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHS   88 (545)
Q Consensus         9 Ll~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~   88 (545)
                      .+.+++..+..+|..-.+|=-...--.-....++++++.+++.|+++...+..++......-+++.+++..++.++.++.
T Consensus        78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~  157 (302)
T PF09738_consen   78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD  157 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777775444443333333367778888888888888888888888888877666666666666666655555


Q ss_pred             HHHHHHHHHH
Q 042557           89 MAKNETSEMA   98 (545)
Q Consensus        89 ~~ekEl~slq   98 (545)
                      .+..++....
T Consensus       158 ~Lre~L~~rd  167 (302)
T PF09738_consen  158 ELREQLKQRD  167 (302)
T ss_pred             HHHHHHHHHH
Confidence            5555544333

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.57  E-value=69  Score=38.06  Aligned_cols=102  Identities=20%  Similarity=0.283  Sum_probs=44.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 042557          119 LNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAM-------ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQ  191 (545)
Q Consensus       119 ~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~-------EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~E  191 (545)
                      ..+.+.+..++..|..+++.|...|...+-.+-..+.++       +-..+.+.++.+.+.+..+++..+--|-..+.++
T Consensus       436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~q  515 (1118)
T KOG1029|consen  436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQ  515 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            333344444444444444444444443333333333333       3333444444444444444444444444445555


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 042557          192 IEDLRIVLKATNEKYESMLDDAKHEIGLLT  221 (545)
Q Consensus       192 ie~Lq~~L~~aE~k~~~~l~ea~~e~~~lk  221 (545)
                      +...+.++.....+ .+.|..+......+.
T Consensus       516 lkq~q~a~~~~~~~-~s~L~aa~~~ke~ir  544 (1118)
T KOG1029|consen  516 LKQKQSAHKETTQR-KSELEAARRKKELIR  544 (1118)
T ss_pred             HHHhhhhccCcchH-HHHHHHHHHHHHHHH
Confidence            55555555444332 233444444444433

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=87.10  E-value=40  Score=34.92  Aligned_cols=85  Identities=19%  Similarity=0.206  Sum_probs=53.0

Q ss_pred             hHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhH
Q 042557          244 HLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKE  323 (545)
Q Consensus       244 ~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE  323 (545)
                      .|-..+-.++.+++-+.+.-+.|..-++..|..       |..|-.+-+.-.-.+.+..-+++-|..-|+=|-.-|-+||
T Consensus        88 q~y~q~s~Leddlsqt~aikeql~kyiReLEQa-------NDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke  160 (333)
T KOG1853|consen   88 QFYQQESQLEDDLSQTHAIKEQLRKYIRELEQA-------NDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKE  160 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            333344446667666666555555555533222       3333333344455566677778888888888989999999


Q ss_pred             HHHHHHHHHHHH
Q 042557          324 TELQSVIQENEE  335 (545)
Q Consensus       324 ~eLq~i~~Ene~  335 (545)
                      +.|.+++.=-++
T Consensus       161 ~llesvqRLkdE  172 (333)
T KOG1853|consen  161 VLLESVQRLKDE  172 (333)
T ss_pred             HHHHHHHHHHHH
Confidence            998888765554

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.99  E-value=11  Score=36.81  Aligned_cols=9  Identities=33%  Similarity=0.435  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 042557          166 EVSVEAREA  174 (545)
Q Consensus       166 E~e~E~eea  174 (545)
                      .++.+-+++
T Consensus       169 ~l~~En~~L  177 (194)
T PF08614_consen  169 KLEEENREL  177 (194)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.99  E-value=62  Score=36.98  Aligned_cols=94  Identities=19%  Similarity=0.241  Sum_probs=55.2

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-----------------------------------
Q 042557          247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL-----------------------------------  291 (545)
Q Consensus       247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L-----------------------------------  291 (545)
                      .-|.++++++.++..+-..|+..|+++...+.-...+...-+..+                                   
T Consensus       318 seiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~rlq~~~d~kgEk~rdg~~kad~~e  397 (772)
T KOG0999|consen  318 SEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRRLQDSKDKKGEKGRDGGEKADLYE  397 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhccccccccccchhHH
Confidence            456777777777777777777777777666554444443333332                                   


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHhHHHh------HHhhHHHHHHHHHHHHHHHhhHHHH
Q 042557          292 ------KEVEAEVIYMQETLGQARAESMKLKES------FLDKETELQSVIQENEELRAREADS  343 (545)
Q Consensus       292 ------k~ae~e~~ea~e~~~ea~~e~~~Lk~~------l~dkE~eLq~i~~Ene~Lr~~Ea~a  343 (545)
                            ....+.+..|...+..++.+...|...      ....|++.|.+..-   |+.-+-+.
T Consensus       398 ~~l~a~e~~a~k~~~a~~e~i~lk~ql~~l~~~~n~tde~~~~e~evq~l~~k---l~llekas  458 (772)
T KOG0999|consen  398 VDLNALEILACKYAVAVDEMIQLKDQLKALYHQLNYTDEKVQYEKEVQELVEK---LRLLEKAS  458 (772)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH---HHHHHHhh
Confidence                  113455566666666667777666655      34456666655433   55544444

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=86.70  E-value=51  Score=35.72  Aligned_cols=30  Identities=10%  Similarity=0.059  Sum_probs=18.5

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          175 KEKLLSSQTEHETYEAQIEDLRIVLKATNE  204 (545)
Q Consensus       175 kekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~  204 (545)
                      ...+..++.+++-.+.-+..+-..++++..
T Consensus       341 ~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l  370 (444)
T TIGR03017       341 RDEMSVLQRDVENAQRAYDAAMQRYTQTRI  370 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555666666666666666666666554

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=85.90  E-value=52  Score=34.99  Aligned_cols=21  Identities=29%  Similarity=0.234  Sum_probs=12.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHH
Q 042557          179 LSSQTEHETYEAQIEDLRIVL  199 (545)
Q Consensus       179 ~~~Q~Ele~~r~Eie~Lq~~L  199 (545)
                      ..++..+++++.+--+|..+|
T Consensus       152 ~~~q~~le~Lr~EKVdlEn~L  172 (310)
T PF09755_consen  152 SAKQEELERLRREKVDLENTL  172 (310)
T ss_pred             HHhHHHHHHHHHHHHhHHHHH
Confidence            444555556666655565555

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=85.89  E-value=52  Score=34.99  Aligned_cols=13  Identities=31%  Similarity=0.524  Sum_probs=6.4

Q ss_pred             hhHHHHHHHHHHH
Q 042557          279 ATKEEEAQLRDSL  291 (545)
Q Consensus       279 ~~~~E~~~lr~~L  291 (545)
                      .+++||-.|+..|
T Consensus       265 ~ireEN~rLqr~L  277 (310)
T PF09755_consen  265 EIREENRRLQRKL  277 (310)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444555555444

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=85.77  E-value=58  Score=36.25  Aligned_cols=107  Identities=25%  Similarity=0.299  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           97 MAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKE  176 (545)
Q Consensus        97 lqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeake  176 (545)
                      +...+..+..+...++.+...+....+.+...+..+..+++++..+|...++.-....+-..-+...|++   .-+..+.
T Consensus       352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~---~~e~~~~  428 (493)
T KOG0804|consen  352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKE---LEEREKE  428 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHH
Confidence            3333333333333333443334444455555666666677777777777765555555444444444444   3344445


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          177 KLLSSQTEHETYEAQIEDLRIVLKATNEKYE  207 (545)
Q Consensus       177 kl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~  207 (545)
                      ....+...+..++.++.+|-.-| ++..+++
T Consensus       429 ~~~s~d~~I~dLqEQlrDlmf~l-e~qqklk  458 (493)
T KOG0804|consen  429 ALGSKDEKITDLQEQLRDLMFFL-EAQQKLK  458 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhHheeh-hhhhhhh
Confidence            55566667777788888877777 6666654

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=85.66  E-value=65  Score=35.92  Aligned_cols=51  Identities=22%  Similarity=0.163  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 042557          135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEH  185 (545)
Q Consensus       135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~El  185 (545)
                      ++.....-.+....++..+++..++|..||+-+=..--.+-+.|..+|...
T Consensus       303 dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~  353 (488)
T PF06548_consen  303 DLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKH  353 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444445555666666666666666654444333444444443333

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=85.65  E-value=38  Score=33.25  Aligned_cols=86  Identities=20%  Similarity=0.197  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557          263 INRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAE----SMKLKESFLDKETELQSVIQENEELRA  338 (545)
Q Consensus       263 ~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e----~~~Lk~~l~dkE~eLq~i~~Ene~Lr~  338 (545)
                      +..+..+|..||.+|..+--..+-+|.++..|+.+-+.+-+.--.+..+    ++.+..    +-.-|.-+-.|+-.|..
T Consensus        59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~----klekLe~LE~E~~rLt~  134 (178)
T PF14073_consen   59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQA----KLEKLEKLEKEYLRLTA  134 (178)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHH----HHHHHHHHHHHHHHHHH
Confidence            6788899999999999999999999999999998888777665444333    444443    33456677788888999


Q ss_pred             hHHHHHHhHHHHHH
Q 042557          339 READSVKKVEELSS  352 (545)
Q Consensus       339 ~Ea~a~~~i~EL~~  352 (545)
                      .-.-|-.+|.+|-.
T Consensus       135 ~Q~~ae~Ki~~LE~  148 (178)
T PF14073_consen  135 TQSLAETKIKELEE  148 (178)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999853

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=85.42  E-value=40  Score=33.26  Aligned_cols=117  Identities=22%  Similarity=0.291  Sum_probs=81.6

Q ss_pred             HHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHH---HHHHHH
Q 042557          222 NIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQL-RDSL---KEVEAE  297 (545)
Q Consensus       222 k~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~l-r~~L---k~ae~e  297 (545)
                      ..+++.+.+++..+..+...=+..+..-+.++.++..+...+..+...-..|      +..-++.| |..|   ...+..
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A------l~~g~edLAr~al~~k~~~e~~   99 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA------LAAGREDLAREALQRKADLEEQ   99 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666666666666666666666666666555544432      22222222 3333   567888


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 042557          298 VIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSV  344 (545)
Q Consensus       298 ~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~  344 (545)
                      +......+..+......|+..+.+.+..|..+...-+.|+....+|.
T Consensus       100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~  146 (221)
T PF04012_consen  100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK  146 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999888777655

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=85.02  E-value=51  Score=34.18  Aligned_cols=92  Identities=22%  Similarity=0.282  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           91 KNETSEMAKTVESLKFELETVKEE----KAQALNNEKLAAS---SVQNLLEEKHKLINELENSREEEEKSKKAMESLASA  163 (545)
Q Consensus        91 ekEl~slqkelesLkseLe~~eee----l~el~ekEk~lss---eIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~A  163 (545)
                      +...+.+++..+.|+.+++..++.    ..+.-..+..+.+   +....++.+.+...+|+.+.+-++.++.+   -.-.
T Consensus        58 etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRa---ti~s  134 (333)
T KOG1853|consen   58 ETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRA---TIYS  134 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh---hhhh
Confidence            333444444444454444444433    2222222333333   34445568888888888888888888855   3445


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHH
Q 042557          164 LHEVSVEAREAKEKLLSSQTEH  185 (545)
Q Consensus       164 L~E~e~E~eeakekl~~~Q~El  185 (545)
                      |..+..-+.++-++..-+..+|
T Consensus       135 leDfeqrLnqAIErnAfLESEL  156 (333)
T KOG1853|consen  135 LEDFEQRLNQAIERNAFLESEL  156 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            5666666666666555554444

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=84.60  E-value=35  Score=31.84  Aligned_cols=55  Identities=25%  Similarity=0.410  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           58 EIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVK  112 (545)
Q Consensus        58 EI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~e  112 (545)
                      .+..+.-.+..+...+.+++.++..+...+..++.....++..+..+...+....
T Consensus        60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k  114 (151)
T PF11559_consen   60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK  114 (151)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333433333333333333444444444333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>TIGR00634 recN DNA repair protein RecN

Probab=83.69  E-value=86  Score=35.66  Aligned_cols=8  Identities=38%  Similarity=0.713  Sum_probs=3.3

Q ss_pred             CCChhhHH
Q 042557          421 GMNDETVE  428 (545)
Q Consensus       421 ~~~~~~~~  428 (545)
                      ++++.+..
T Consensus       474 gld~~~~~  481 (563)
T TIGR00634       474 GVSGETAQ  481 (563)
T ss_pred             CCCHHHHH
Confidence            44444333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=83.39  E-value=1e+02  Score=36.30  Aligned_cols=165  Identities=18%  Similarity=0.154  Sum_probs=74.4

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhh
Q 042557          173 EAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKS  252 (545)
Q Consensus       173 eakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~  252 (545)
                      -...+...+-..+++.+.++..|-..+..++.+|-.+.-+- .-+.-..+++..-...+.....--.....-+...|+++
T Consensus       451 ~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~-~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~l  529 (698)
T KOG0978|consen  451 CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSER-IKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKL  529 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555666666667777777777766665433221 11112223333333333444444444445555666777


Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHH
Q 042557          253 EEENSSLEKEINRLVNLLK-------ETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETE  325 (545)
Q Consensus       253 eee~~~~~~e~~~l~e~l~-------~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~e  325 (545)
                      +++...++.....+...+.       ..-+.+.-+....+.|+..+...++.+..++..+.++..+..-++-.....|.+
T Consensus       530 eeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE  609 (698)
T KOG0978|consen  530 EEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEE  609 (698)
T ss_pred             HHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776666665543333333       122222223333333333333344444444444444444444444444344444


Q ss_pred             HHHHHHHHHHHHh
Q 042557          326 LQSVIQENEELRA  338 (545)
Q Consensus       326 Lq~i~~Ene~Lr~  338 (545)
                      +.-+...++.++.
T Consensus       610 ~e~L~~kle~~k~  622 (698)
T KOG0978|consen  610 LERLKRKLERLKK  622 (698)
T ss_pred             HHHHHHHHHHhcc
Confidence            4444444444333

>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells

Probab=83.30  E-value=58  Score=33.41  Aligned_cols=174  Identities=11%  Similarity=0.151  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHH
Q 042557          185 HETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEIN  264 (545)
Q Consensus       185 le~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~  264 (545)
                      |..+=.+|..|...|.+|...|+..|.+++..+..+.++|-.-+.-+.=+..++.. ...+...+-..-..+..+..-..
T Consensus        16 LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~-a~~aq~e~q~Aa~~yerA~~~h~   94 (239)
T PF05276_consen   16 LNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRK-AKEAQQEAQKAALQYERANSMHA   94 (239)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778889999999999999999999999999999998755444434433333 33444444444445555555556


Q ss_pred             HHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHH-------
Q 042557          265 RLVNLLKETEEDACATK--EEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEE-------  335 (545)
Q Consensus       265 ~l~e~l~~~E~~~~~~~--~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~-------  335 (545)
                      ..++.+..+|..+..-.  .=.....+.|.+|-..+++|......+..+-.........-++.++.|...+--       
T Consensus        95 aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrP  174 (239)
T PF05276_consen   95 AAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRP  174 (239)
T ss_pred             HHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            66666666666655544  233456688899988888888888888877777777888888888887766543       


Q ss_pred             -------HHhhHHHHHHhHHHHHHHHHHHHh
Q 042557          336 -------LRAREADSVKKVEELSSLLEEAMA  359 (545)
Q Consensus       336 -------Lr~~Ea~a~~~i~EL~~ll~ea~~  359 (545)
                             +-..=.....+|.+|..-+..|..
T Consensus       175 Yfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~  205 (239)
T PF05276_consen  175 YFELKAKFNQQLEEQKEKVEELEAKVKQAKS  205 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   111222345666666666665543

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=82.70  E-value=30  Score=29.62  Aligned_cols=70  Identities=17%  Similarity=0.274  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 042557          150 EEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKE  226 (545)
Q Consensus       150 eEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~  226 (545)
                      ++.++..++.++..+........+..-++...-.|++.+|.-+-+|..+-.....+|+       .||.+|+..++.
T Consensus         6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YE-------eEI~rLr~eLe~   75 (79)
T PF08581_consen    6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYE-------EEIARLRRELEQ   75 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence            4455666666666666666666666677777777788888888888888878888887       889998877764

; PDB: 3VP9_B 3VP8_B.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=82.67  E-value=14  Score=36.87  Aligned_cols=76  Identities=12%  Similarity=0.278  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHH
Q 042557          253 EEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQE  332 (545)
Q Consensus       253 eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~E  332 (545)
                      ...+-.++.++..+.+.|......   .....+++...+.+       ++..+..+..+|.+|+..+...-+++..+.++
T Consensus        92 ~~rlp~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~-------~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~  161 (206)
T PRK10884         92 RTRVPDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQ-------SDSVINGLKEENQKLKNQLIVAQKKVDAANLQ  161 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444433322   22344444444444       33334456777777777776666666666666


Q ss_pred             HHHHHh
Q 042557          333 NEELRA  338 (545)
Q Consensus       333 ne~Lr~  338 (545)
                      |+.++.
T Consensus       162 ~~~~~~  167 (206)
T PRK10884        162 LDDKQR  167 (206)
T ss_pred             HHHHHH
Confidence            666543

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=82.56  E-value=89  Score=35.03  Aligned_cols=32  Identities=16%  Similarity=0.297  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          148 EEEEKSKKAMESLASALHEVSVEAREAKEKLL  179 (545)
Q Consensus       148 ~eeEkekka~EeLa~AL~E~e~E~eeakekl~  179 (545)
                      ..+..++.+-+.|+..|+...+..-.+.+++.
T Consensus       404 k~LqEsr~eKetLqlelkK~k~nyv~LQEry~  435 (527)
T PF15066_consen  404 KHLQESRNEKETLQLELKKIKANYVHLQERYM  435 (527)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence            33344444445555555555555554444443

>PLN02939 transferase, transferring glycosyl groups

Probab=82.45  E-value=1.3e+02  Score=36.84  Aligned_cols=180  Identities=25%  Similarity=0.262  Sum_probs=105.8

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHH
Q 042557          178 LLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENS  257 (545)
Q Consensus       178 l~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~  257 (545)
                      +...-.+-+.++.++.-|.+.|.++..+.+..- +.+.-..-+-..|+.++.|+-..-+-...-...+..-...+.+|+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (977)
T PLN02939        158 LEKILTEKEALQGKINILEMRLSETDARIKLAA-QEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENM  236 (977)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhh-hccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhH
Confidence            333344456677888888888888888877532 2333344556667777777655544433323333333333555666


Q ss_pred             HHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHhHHhhHHHH-------
Q 042557          258 SLEKEINRLVN---LLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARA-ESMKLKESFLDKETEL-------  326 (545)
Q Consensus       258 ~~~~e~~~l~e---~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~-e~~~Lk~~l~dkE~eL-------  326 (545)
                      .++..++-|..   .+..++..+-.+--|..-|...|+.+|+.+..+++-+-.+.. +.-.|=+.+-.+..=|       
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (977)
T PLN02939        237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQV  316 (977)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666544433   446678888888899999999999999999888877665511 1111222111111111       


Q ss_pred             ---HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhccccc
Q 042557          327 ---QSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQTAE  365 (545)
Q Consensus       327 ---q~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~~~~~~~~  365 (545)
                         -.+-+.|.+|       +++++.|...|.+|..-++..+
T Consensus       317 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  351 (977)
T PLN02939        317 EKAALVLDQNQDL-------RDKVDKLEASLKEANVSKFSSY  351 (977)
T ss_pred             HHHHHHhccchHH-------HHHHHHHHHHHHHhhHhhhhHH
Confidence               1122333333       4678888888888877665543

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=82.18  E-value=1.1e+02  Score=35.89  Aligned_cols=54  Identities=33%  Similarity=0.361  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 042557          219 LLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKET  273 (545)
Q Consensus       219 ~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~  273 (545)
                      .+...++............-+..+..++... .-+.+.+.+..++.+|+.+.+..
T Consensus       266 ~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~  319 (670)
T KOG0239|consen  266 LLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRVF  319 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEE
Confidence            3444444444444445555566666777677 77888888999999888888744

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.05  E-value=1e+02  Score=35.30  Aligned_cols=254  Identities=19%  Similarity=0.218  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhHHHHHHH
Q 042557           57 SEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE--------KAQALNNEKLAASS  128 (545)
Q Consensus        57 sEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee--------l~el~ekEk~lsse  128 (545)
                      .+...+++.+--+..++-..+..|+..++.|.+-..-+-.+-..+.+-...-......        +..+--+.+ -...
T Consensus       236 ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~-~er~  314 (654)
T KOG4809|consen  236 AELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMK-VERI  314 (654)
T ss_pred             HHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhch-HHHH


Q ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          129 VQNLLE----EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNE  204 (545)
Q Consensus       129 Ie~L~e----el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~  204 (545)
                      |..|.+    +=.....+|+..+...-..+.-+.-|+.+|.+..+.+-..++....+.........+...+..+|+.-.+
T Consensus       315 IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkE  394 (654)
T KOG4809|consen  315 IERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKE  394 (654)
T ss_pred             HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH


Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 042557          205 KYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEE  284 (545)
Q Consensus       205 k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~  284 (545)
                      ++-               ++++...-+....+.+.. .-+|-+.|+..+.+.+..+.+.-              ...++.
T Consensus       395 ec~---------------kme~qLkkAh~~~ddar~-~pe~~d~i~~le~e~~~y~de~~--------------kaqaev  444 (654)
T KOG4809|consen  395 ECS---------------KMEAQLKKAHNIEDDARM-NPEFADQIKQLEKEASYYRDECG--------------KAQAEV  444 (654)
T ss_pred             HHH---------------HHHHHHHHHHHhhHhhhc-ChhhHHHHHHHHHHHHHHHHHHH--------------HHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHH
Q 042557          285 AQLRDSLKEVEAEVIYMQETLGQA----RAESMKLKESFLDKETELQSVIQENEELRAREA  341 (545)
Q Consensus       285 ~~lr~~Lk~ae~e~~ea~e~~~ea----~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea  341 (545)
                      .+|-.+|++++++-++--.++.++    ..+|......+-+---++.--.+..++.|..++
T Consensus       445 drlLeilkeveneKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred  505 (654)
T KOG4809|consen  445 DRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRRED  505 (654)
T ss_pred             HHHHHHHHHHHhhhccccchhhhcCchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHh

>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species

Probab=81.90  E-value=21  Score=33.30  Aligned_cols=113  Identities=17%  Similarity=0.224  Sum_probs=65.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHH----hhhhhHHHhh
Q 042557          174 AKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWE----QKELHLVDCV  249 (545)
Q Consensus       174 akekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~----~kE~~~~~~i  249 (545)
                      ++.-|...+.+|++...+|-+++..+..|+--    |-..+.+++..-++|-    |+++-.+..-    ..+.++.   
T Consensus         6 a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~----~~~r~seldqA~~~~~----eae~k~~~~~a~~P~~~~~~~---   74 (136)
T PF11570_consen    6 AERNYEAARAELDQADEDIATLQERQASAEQA----LNGRRSELDQANKKVK----EAEIKQDEFFANNPPHEYGRG---   74 (136)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHCCCCTT-TTSSCHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH----HHHhcccccccCCCccccccH---
Confidence            44456667777777777777777777666644    3334444444444442    2333332211    1233333   


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 042557          250 KKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVI  299 (545)
Q Consensus       250 K~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~  299 (545)
                        ++..+..++.+|+.--..|.+++.++..+..++.+.+.+|-.|-....
T Consensus        75 --wqlkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rk  122 (136)
T PF11570_consen   75 --WQLKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRK  122 (136)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence              457888888899888888999999999999988888888855444433

Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.57  E-value=65  Score=32.80  Aligned_cols=45  Identities=16%  Similarity=0.263  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          133 LEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEK  177 (545)
Q Consensus       133 ~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakek  177 (545)
                      +.+++.+..-+..++.+....+....-+...+.-+..++.+.+..
T Consensus        59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333444444444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=81.42  E-value=1.2e+02  Score=35.69  Aligned_cols=73  Identities=21%  Similarity=0.191  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557          218 GLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL  291 (545)
Q Consensus       218 ~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L  291 (545)
                      ..+...+..+........+..-..-..+..|.+.+-..+..+......|.+.+ .-+.....+..+..+|+.++
T Consensus       244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnI  316 (670)
T KOG0239|consen  244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNI  316 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCc
Confidence            33333333333333333333333333333333333333333333333444444 22344456677777777766

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=80.85  E-value=70  Score=32.70  Aligned_cols=38  Identities=29%  Similarity=0.379  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          167 VSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNE  204 (545)
Q Consensus       167 ~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~  204 (545)
                      +..++.++...+..+..+......+...|+.-|..|..
T Consensus        80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~  117 (246)
T PF00769_consen   80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEARE  117 (246)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444433

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=80.48  E-value=1.5e+02  Score=36.27  Aligned_cols=108  Identities=15%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           39 DAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQA  118 (545)
Q Consensus        39 ~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el  118 (545)
                      .-+....+.++..+..+...+.-+..++..|+.++.....++......+...-..+......+......+......+..+
T Consensus       251 ~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~l  330 (1072)
T KOG0979|consen  251 NAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESL  330 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555566666555555555555555555555444444444444555555555555555


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          119 LNNEKLAASSVQNLLEEKHKLINELENS  146 (545)
Q Consensus       119 ~ekEk~lsseIe~L~eel~kl~~ELE~~  146 (545)
                      +++.......|......+-.+..+|...
T Consensus       331 k~~~~~rq~~i~~~~k~i~~~q~el~~~  358 (1072)
T KOG0979|consen  331 KKAAEKRQKRIEKAKKMILDAQAELQET  358 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            5555555555665555555555555443

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=80.39  E-value=37  Score=35.97  Aligned_cols=80  Identities=23%  Similarity=0.228  Sum_probs=59.7

Q ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           37 SLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA  116 (545)
Q Consensus        37 SL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~  116 (545)
                      |+.-....|-.+-.++..+.-..+.|......|.-+|..|+-.|++....+..+++++.....+++.++..+..+..++.
T Consensus        78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~  157 (302)
T PF09738_consen   78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD  157 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777777777777788888888888888888888888888888888888877777777777766666555544

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=80.31  E-value=64  Score=37.26  Aligned_cols=14  Identities=29%  Similarity=0.541  Sum_probs=7.0

Q ss_pred             hhHHHHHHHHHHHH
Q 042557          321 DKETELQSVIQENE  334 (545)
Q Consensus       321 dkE~eLq~i~~Ene  334 (545)
                      .++.+|..|.+||-
T Consensus       633 ~k~~~i~riieEYR  646 (652)
T COG2433         633 QKEEDILRIIEEYR  646 (652)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34445555555553

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=80.17  E-value=8.9  Score=34.51  Aligned_cols=54  Identities=28%  Similarity=0.392  Sum_probs=48.4

Q ss_pred             hhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557          243 LHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA  296 (545)
Q Consensus       243 ~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~  296 (545)
                      .++.+.|..++..+..+-.++..|...+...-.+...|+=||+.||..|.+...
T Consensus         4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356778888999999999999999999999999999999999999999977665

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=80.09  E-value=59  Score=31.36  Aligned_cols=48  Identities=8%  Similarity=0.142  Sum_probs=21.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 042557           47 GNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNET   94 (545)
Q Consensus        47 ~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl   94 (545)
                      ..+..++.+..++..++.++...-.++..++...-.++..|-.+.+..
T Consensus        24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f   71 (159)
T PF05384_consen   24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF   71 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            333444444444444444444444444444444444444444444443

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	545
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-09
4dvy_P	877	Cytotoxicity-associated immunodominant antigen; on	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 52/350 (14%), Positives = 129/350 (36%), Gaps = 29/350 (8%)

Query: 7    RNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKV 66
               ++  K R ++ E + +E  +      E  + +  +L+   +   +AE     L  K 
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 67   GLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAA 126
              LE  +   +A ++E E +    + E  +M + +  L+ +LE  +  +           
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR----------- 971

Query: 127  SSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHE 186
               Q L  EK     +++   ++    +     L      +     +    L        
Sbjct: 972  ---QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL-------- 1020

Query: 187  TYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLV 246
               A+ E+    L     K+ESM+ + +  +       ++++ E +  K + E +   L 
Sbjct: 1021 ---AEEEEKAKNLTKLKNKHESMISELEVRLKKE----EKSRQELEKIKRKLEGESSDLH 1073

Query: 247  DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLG 306
            + + + + + + L+ ++ +    L+           ++      ++E+E+ +  +QE L 
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133

Query: 307  QARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEE 356
              +A   K ++   D   EL+++  E E+     A   +         ++
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 78.3 bits (193), Expect = 3e-15
 Identities = 62/345 (17%), Positives = 144/345 (41%), Gaps = 16/345 (4%)

Query: 71   MTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQ 130
            + + RQ+ ++   + +    K    +    ++ L+ +   + EEK    N  +    +  
Sbjct: 850  LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEK----NLLQEKLQAET 905

Query: 131  NLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEA 190
             L  E  ++   L   ++E E+    ME+      E S + +  K+K+   Q +    E 
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM---QQQMLDLEE 962

Query: 191  QIEDL---RIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVD 247
            Q+E+    R  L+      +  +   + +I ++ +   +   E K+ +        +L  
Sbjct: 963  QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL-- 1020

Query: 248  CVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQ 307
               + EE+  +L K  N+  +++ E E      ++   +L    +++E E   + E + +
Sbjct: 1021 --AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078

Query: 308  ARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQTAENG 367
             +A+  +LK     KE ELQ+ +   E+  +++ +++KK+ EL S + + + +   +E  
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD-LQEDLESEKA 1137

Query: 368  ELTDSEKDY-DLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQN 411
                +EK   DL  ++     E          + +L   + K+ +
Sbjct: 1138 ARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 78.0 bits (192), Expect = 4e-15
 Identities = 67/341 (19%), Positives = 127/341 (37%), Gaps = 28/341 (8%)

Query: 36   ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETS 95
            E + A   +L+   ++   AE+E+  L++K       +  +K  L E  +  +    E  
Sbjct: 857  EEMQAKDEELQRTKERQQKAEAELKELEQK----HTQLCEEKNLLQEKLQAETELYAEAE 912

Query: 96   EMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKL---INELENSREEEEK 152
            EM   + + K ELE +  E    +   +      Q L  EK K+   + +LE   EEEE 
Sbjct: 913  EMRVRLAAKKQELEEILHEMEARI---EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969

Query: 153  SKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDD 212
            +++ ++           E   A  K+   + +    E Q   L    K   E+   +  +
Sbjct: 970  ARQKLQL----------EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 213  AKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKE 272
               E        +E        K + E     L   +KK E+    LEK   +L     +
Sbjct: 1020 LAEE--------EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071

Query: 273  TEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQE 332
              E     + + A+L+  L + E E+      L    ++     +   + E+ +  + ++
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131

Query: 333  NEELRAREADSVKKVEELSSLLEEAMAKKQTAENGELTDSE 373
             E  +A    + K+  +LS  LE    + +   +   T  E
Sbjct: 1132 LESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.4 bits (188), Expect = 1e-14
 Identities = 51/296 (17%), Positives = 117/296 (39%), Gaps = 13/296 (4%)

Query: 6    ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEK 65
             +NL++E      EL  +AEE      +  + L+ ++ ++E    ++ + E     L+ +
Sbjct: 893  EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEME---ARIEEEEERSQQLQAE 949

Query: 66   VGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLA 125
               ++  +   +  L+E E      + E       ++ ++ ++  ++++  +     KL 
Sbjct: 950  KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009

Query: 126  ASSVQNL---LEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLL--- 179
               V +L   L E+ +    L   + + E     +E       +   E  + K KL    
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069

Query: 180  -SSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKD-ESKISKAE 237
                 +    +AQI +L+  L    E+ ++ L   + E     N +K+ ++ ES IS  +
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129

Query: 238  WEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKE 293
             + +         K+E++   L +E+  L   L++T +     +E          +
Sbjct: 1130 EDLESEK--AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 36/228 (15%), Positives = 85/228 (37%), Gaps = 7/228 (3%)

Query: 10   VEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLL 69
            + + + ++EE E   ++    K +A   +  +   +    D+ +    E   L+E+V  L
Sbjct: 957  MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDL 1016

Query: 70   EMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSV 129
               +  ++       +  +  ++  SE+   ++  +   + +++ K +           +
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI 1076

Query: 130  QNLLEEKHKLINELENSREEEEKSKKAMES-------LASALHEVSVEAREAKEKLLSSQ 182
              L  +  +L  +L    EE + +   +E            + E+     + +E L S +
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136

Query: 183  TEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDE 230
                  E Q  DL   L+A   + E  LD    +  L  +  K+  D+
Sbjct: 1137 AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 38/251 (15%), Positives = 97/251 (38%), Gaps = 5/251 (1%)

Query: 240  QKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVI 299
             K     + ++  +EE    ++   +    LKE E+      EE+  L++ L+       
Sbjct: 850  LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909

Query: 300  YMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMA 359
              +E   +  A+  +L+E   + E  ++   + +++L+A +    +++ +L   LEE  A
Sbjct: 910  EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969

Query: 360  KKQTAENGELTDSEKDYDLLPKVVEFSEENGHARGEEKPKMDLPVQECKEQNLENSKEET 419
             +Q  +  ++T   K   +   ++   ++N     E K      ++E       N  EE 
Sbjct: 970  ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK-----LLEERVSDLTTNLAEEE 1024

Query: 420  NGMNDETVELAAAKIDNVNGKLKEDESKEKEDDSVEVEFKMWESCKIEKELSPDREPEPE 479
                + T      +      +++  + ++   +  +++ K+        E   + + +  
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084

Query: 480  SFEEETNSKVE 490
              + +   K E
Sbjct: 1085 ELKAQLAKKEE 1095

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 64.4 bits (157), Expect = 6e-11
 Identities = 44/269 (16%), Positives = 92/269 (34%), Gaps = 38/269 (14%)

Query: 105  KFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLI----NELENSREEEEKSKKAMESL 160
            +++         QAL    L  +  Q +L E   +I         +R    ++ KA+  L
Sbjct: 834  RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893

Query: 161  ASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLL 220
                  +  +    K K+ +   E               K  +   E+ +   + +I   
Sbjct: 894  QCCYRRMMAKRELKKLKIEARSVER-------------YKKLHIGLENKIMQLQRKIDEQ 940

Query: 221  TNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACAT 280
                K   ++    +  +  +   L    +   E     E+E     N +   +      
Sbjct: 941  NKEYKSLLEKMNNLEITYSTETEKL----RSDVERLRMSEEEAKNATNRVLSLQ------ 990

Query: 281  KEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRARE 340
             EE A+LR  L + + E   ++E        + K K       +EL+   ++N  L+  +
Sbjct: 991  -EEIAKLRKELHQTQTEKKTIEE-------WADKYKHETEQLVSELK---EQNTLLKTEK 1039

Query: 341  ADSVKKVEELSSLLEEAMAKKQTAENGEL 369
             +  +++ + +  + E M KK   E  +L
Sbjct: 1040 EELNRRIHDQAKEITETMEKKLVEETKQL 1068

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 39/227 (17%), Positives = 92/227 (40%), Gaps = 23/227 (10%)

Query: 76   QKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEE 135
             K+ + +   +  +A+       K +  L+     +  ++   L   K+ A SV+   + 
Sbjct: 865  HKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE--LKKLKIEARSVERYKKL 922

Query: 136  KHKL---INELENSREEEEKSKKAMESLASALHEVSVEAREAKEKL-LSSQTEHETYEAQ 191
               L   I +L+   +E+ K  K++               E    L ++  TE E   + 
Sbjct: 923  HIGLENKIMQLQRKIDEQNKEYKSLL--------------EKMNNLEITYSTETEKLRSD 968

Query: 192  IEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKK 251
            +E LR+  +   +   + +   + EI  L   + + + E K  +   ++ +      V +
Sbjct: 969  VERLRMSEE-EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027

Query: 252  SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEV 298
             +E+N+ L+ E   L   + +  ++   T+  E +L +  K++E ++
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKE--ITETMEKKLVEETKQLELDL 1072

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.4 bits (139), Expect = 8e-09
 Identities = 37/250 (14%), Positives = 85/250 (34%), Gaps = 28/250 (11%)

Query: 1    MAESYARNLVEEWKIRVEELEMQAEEAHK-----LKRSASESLDAVMRQLEGNNDKLHDA 55
            +  +  + ++ E K  + +  ++   A       LK              +    KL   
Sbjct: 853  LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIE 912

Query: 56   ESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEK 115
               +   K+    LE         + + +RK      E   + + + +L+    T  E+ 
Sbjct: 913  ARSVERYKKLHIGLE-------NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965

Query: 116  AQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAK 175
               +         ++   EE     N + + +EE       +  L   LH+   E +  +
Sbjct: 966  RSDV-------ERLRMSEEEAKNATNRVLSLQEE-------IAKLRKELHQTQTEKKTIE 1011

Query: 176  EKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISK 235
            E     + E E   +++++   +LK   E+    + D   E  +   + K+  +E+K  +
Sbjct: 1012 EWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE--ITETMEKKLVEETKQLE 1069

Query: 236  AEWEQKELHL 245
             +   + L  
Sbjct: 1070 LDLNDERLRY 1079

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 40/333 (12%), Positives = 104/333 (31%), Gaps = 74/333 (22%)

Query: 71  MTIGRQKADLDESERK----HSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAA 126
           + +    +     E      + +  N TS  +    ++K  + +++ E  + L ++    
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSR-SDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 127 S-----SVQNLLEEKHKLINELEN-------SREEEEKSKKAMESLASALHEVSVEAREA 174
                 +VQN      K  N           +R +          +   L   +     +
Sbjct: 246 CLLVLLNVQNA-----KAWNAFNLSCKILLTTRFK---------QVTDFL-SAATTTHIS 290

Query: 175 KEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKIS 234
            +    + T  E          ++LK  + + + +  +         +II E+  +   +
Sbjct: 291 LDHHSMTLTPDEV-------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 235 KAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEV 294
              W+      V+C K +    SSL          L+  E       +  +    S   +
Sbjct: 344 WDNWKH-----VNCDKLTTIIESSLNV--------LEPAEYRKMF--DRLSVFPPSAH-I 387

Query: 295 EAEVIYMQETL--GQARAESMKLKESFLDKETELQSVIQENEE-----LRAREADSVKKV 347
              ++     +     +++ M +            S++++  +     + +   +   K+
Sbjct: 388 PTILL---SLIWFDVIKSDVMVVVNKLHKY-----SLVEKQPKESTISIPSIYLELKVKL 439

Query: 348 EELSSL---LEEAMAKKQTAENGELTDSEKD-Y 376
           E   +L   + +     +T ++ +L     D Y
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 9e-04
 Identities = 51/416 (12%), Positives = 115/416 (27%), Gaps = 119/416 (28%)

Query: 185 HETYEAQIEDL--RIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKE 242
           H  +E        + +L    + +    D  K    +  +I+ + + +  I   +     
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 243 LHLVDCVKKSEEE------NSSLEKEINRLVNLLK-ETEEDACATK-------------- 281
           L L   +   +EE         L      L++ +K E  + +  T+              
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 282 ----------EEEAQLRDSLKEVEAE---VIY-MQ---------ETLGQARAES------ 312
                     +   +LR +L E+      +I  +          +     + +       
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 313 --MKLK-----ESFLDKETELQSVIQENEELRAREADSVK-KVEELSSLLEEAMAKKQ-- 362
             + LK     E+ L+   +L   I  N   R+  + ++K ++  + + L   +  K   
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 363 --------------------------TAENGELTDS-----EKDYDLLPKVVEFSEENGH 391
                                     T    ++TD           L    +  + +   
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 392 ---ARGEEKPKMDLPVQECKEQNL------ENSKEETNGMNDETVELAAAKIDNVNGK-- 440
               +  +    DLP +             E+ ++      D    +   K+  +     
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESSL 363

Query: 441 --LKEDESKEK-EDDSVEVEFKMWESCKI-EKELS----PDREPEPESFEEETNSK 488
             L+  E ++  +  SV   F    S  I    LS       + +      + +  
Sbjct: 364 NVLEPAEYRKMFDRLSV---FP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 30/215 (13%), Positives = 67/215 (31%), Gaps = 14/215 (6%)

Query: 7    RNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKV 66
            ++ +   K   +  +    +      +   SL   +R ++     +  A      +    
Sbjct: 802  QSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIK-REPFVAPAGLTPNEIDSTW 860

Query: 67   GLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKL-- 124
              LE    + + +  E+ R     + + + + +    +  +LE     K+  L + +   
Sbjct: 861  SALE----KAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGD 916

Query: 125  ---AASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSS 181
               A  +    LE        LE     +  S      L    +    E  E K+   + 
Sbjct: 917  SITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL--AQLTELNYNGVPELTERKDTFFAQ 974

Query: 182  QTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHE 216
            Q      ++  E  +  L A  E+ + + D   H 
Sbjct: 975  QWTGV--KSSAETYKNTLLAELERLQKIEDLHHHH 1007

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	545
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.32
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.78
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.66
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.81
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.39
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.38
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.27
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.18
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.74
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.56
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	96.18
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.02
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.78
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	95.58
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.13
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.12
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	94.98
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	94.82
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.47
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	94.02
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	93.81
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.4
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	91.8
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	91.56
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	91.53
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	90.69
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	90.58
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	90.39
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	89.96
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	89.57
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	89.32
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	89.3
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.12
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	87.19
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	86.3
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	86.11
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	85.72
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	85.58
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	85.13
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	83.32
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	83.28
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	83.14
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	81.7
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	81.67
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	81.01
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	80.77
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	80.76

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.32  E-value=2e-07  Score=88.90  Aligned_cols=104  Identities=14%  Similarity=0.152  Sum_probs=47.8

Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557           43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE  122 (545)
Q Consensus        43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE  122 (545)
                      .+|+.+...+..+...+..+...+..+...+..+...+..+...+......+..++..+..+...+..+...+..+..+.
T Consensus        13 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (284)
T 1c1g_A           13 LDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRI   92 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444555555555444444444444444444444444444444444444444444444444444343333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          123 KLAASSVQNLLEEKHKLINELENS  146 (545)
Q Consensus       123 k~lsseIe~L~eel~kl~~ELE~~  146 (545)
                      ..+...+..+...+..+...+..+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~  116 (284)
T 1c1g_A           93 QLFEEELDRAQERLATALQKLEEA  116 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444433333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.78  E-value=1.6e-08  Score=119.88  Aligned_cols=56  Identities=14%  Similarity=0.192  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHH
Q 042557          282 EEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELR  337 (545)
Q Consensus       282 ~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr  337 (545)
                      .+...+...++..+.++..++..+..+......+...+.+++..+..+..++++.+
T Consensus      1081 ~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~ 1136 (1184)
T 1i84_S         1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136 (1184)
T ss_dssp             --------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444555555555555555555555555543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.66  E-value=6.4e-08  Score=114.84  Aligned_cols=38  Identities=24%  Similarity=0.240  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042557          252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRD  289 (545)
Q Consensus       252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~  289 (545)
                      ++.++..++.++..+...+...+.++..+..+...++.
T Consensus      1065 le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~ 1102 (1184)
T 1i84_S         1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102 (1184)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444433333333333333333333333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.81  E-value=0.0049  Score=61.19  Aligned_cols=60  Identities=18%  Similarity=0.286  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557          135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED  194 (545)
Q Consensus       135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~  194 (545)
                      ++..+.++++.+..+.......+-++...++.+...+..+...+...+..+...+.++..
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~  150 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN  150 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555444444444444444444444444444444444444444443333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.39  E-value=0.039  Score=54.61  Aligned_cols=54  Identities=19%  Similarity=0.164  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          123 KLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKE  176 (545)
Q Consensus       123 k~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeake  176 (545)
                      ..+..+|..+..++..+..++..+..+.+..+..++.+...+..+...+...+.
T Consensus        93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~  146 (256)
T 3na7_A           93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELES  146 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555555554444444444444444444443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.38  E-value=0.038  Score=52.90  Aligned_cols=141  Identities=15%  Similarity=0.145  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 042557            6 ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEG-NNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESE   84 (545)
Q Consensus         6 V~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~-lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k   84 (545)
                      +.+=|.=|+..+..+..++..++.=+    ..+.-.+++|+. +-..|..++..+..|+.++..|..++..|+.++..+.
T Consensus         8 ~~ee~~ywk~~~~~~~q~~~~le~El----~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~   83 (189)
T 2v71_A            8 LKEETAYWKELSMKYKQSFQEARDEL----VEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY   83 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556667776665555544443211    233333344442 3445666777777777777777777777777777776


Q ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           85 RK----HSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEE  150 (545)
Q Consensus        85 ~e----L~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~ee  150 (545)
                      .+    +..++.++..++.....|...|+.++...+.+......+.+-+.++..+++.....+-.+-..+
T Consensus        84 ~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El  153 (189)
T 2v71_A           84 AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESEL  153 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66    6777778888888888888888888888888888888888888888888887777655553333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.27  E-value=0.047  Score=51.23  Aligned_cols=109  Identities=17%  Similarity=0.226  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 042557           14 KIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNE   93 (545)
Q Consensus        14 kkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekE   93 (545)
                      ..++..|++|+..++.-.+.-+.+-.-+.+..-.+...+..+...+..|++++..|+..-..|+.++-.+...|.+-...
T Consensus         5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~   84 (168)
T 3o0z_A            5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD   84 (168)
T ss_dssp             -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566778888877776666665555555555555555555555555555555554444444444443333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557           94 TSEMAKTVESLKFELETVKEEKAQALNNE  122 (545)
Q Consensus        94 l~slqkelesLkseLe~~eeel~el~ekE  122 (545)
                      .+.....+.+|.+.+..+..++..+..++
T Consensus        85 r~q~se~~~elq~ri~~L~~El~~~k~~~  113 (168)
T 3o0z_A           85 RGHDSEMIGDLQARITSLQEEVKHLKHNL  113 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.18  E-value=0.12  Score=49.32  Aligned_cols=142  Identities=16%  Similarity=0.131  Sum_probs=87.0

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHH
Q 042557          175 KEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEE  254 (545)
Q Consensus       175 kekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~ee  254 (545)
                      +..+..++..+.+++.++...+.+-..-|.-++..|..+.....-|...+.++..|.+..+.-...--..+...|..++.
T Consensus        16 k~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~   95 (189)
T 2v71_A           16 KELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLED   95 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444555566777777777778888887777777766555555555567777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhH
Q 042557          255 ENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKE  323 (545)
Q Consensus       255 e~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE  323 (545)
                      ++..++.....|...++..|-.       |..|-...+.+.+.+.+..-.++.+--.|+=|-.-+-+|+
T Consensus        96 el~~l~~~~~~l~~~ireLEq~-------NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe  157 (189)
T 2v71_A           96 DLSQTRAIKEQLHKYVRELEQA-------NDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKE  157 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888777777755554       5555555555555555555555555555555554444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.74  E-value=0.33  Score=45.54  Aligned_cols=126  Identities=18%  Similarity=0.228  Sum_probs=85.4

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           38 LDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQ  117 (545)
Q Consensus        38 L~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~e  117 (545)
                      +..+.++|..++..|..-....+.+++....+.+.+..++..+.++...+...+..--.++.++..|.+.+..-....  
T Consensus         8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r--   85 (168)
T 3o0z_A            8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR--   85 (168)
T ss_dssp             --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            445567888888888777777777777777777777777777777777777777777777777777777765544332  


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          118 ALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVE  170 (545)
Q Consensus       118 l~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E  170 (545)
                           ...+..|.++..++..+..+|+.++..+.++.-..-.|...|..++.+
T Consensus        86 -----~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe  133 (168)
T 3o0z_A           86 -----GHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE  133 (168)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 334555666667777777777777777666665555555555554444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.56  E-value=1.4  Score=57.42  Aligned_cols=54  Identities=15%  Similarity=0.178  Sum_probs=36.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHH
Q 042557          279 ATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQE  332 (545)
Q Consensus       279 ~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~E  332 (545)
                      .+..|.+.|...+...+..+.-|..=++-+..|..+|.+........+.+|.-+
T Consensus      2053 ~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A         2053 TLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence            334444444444555555555566666777888889999998888888887765

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=96.18  E-value=0.13  Score=44.22  Aligned_cols=97  Identities=18%  Similarity=0.275  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 042557           10 VEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSM   89 (545)
Q Consensus        10 l~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~   89 (545)
                      ..=|++++..|..+++.|..-.       ..+...+.........+..+|.+|+.++..++.++......+.+++..+..
T Consensus         4 MdaIKkKm~~lk~e~e~a~dra-------e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee   76 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRA-------EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF   76 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3458899999999888765433       234456677777778889999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           90 AKNETSEMAKTVESLKFELETVKE  113 (545)
Q Consensus        90 ~ekEl~slqkelesLkseLe~~ee  113 (545)
                      ..+........+.+|...|..+++
T Consensus        77 ~ek~~~~aE~ev~~L~RriqllEE  100 (101)
T 3u1c_A           77 AEENAAKAESEVASLNRRIQLVEE  100 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc
Confidence            888888888888888877766653

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.02  E-value=0.95  Score=41.94  Aligned_cols=97  Identities=22%  Similarity=0.254  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 042557          111 VKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEA  190 (545)
Q Consensus       111 ~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~  190 (545)
                      ++.++..+..+-..+.+.+..|.+++....+.|..+....++.-...+.....|+.++..+.++..++..+...+..+..
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk  105 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK  105 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555555566666666666666666666666655556666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 042557          191 QIEDLRIVLKATNEKYE  207 (545)
Q Consensus       191 Eie~Lq~~L~~aE~k~~  207 (545)
                      .+++|.-.|..+..+|.
T Consensus       106 ~id~lEd~L~~~Kek~~  122 (155)
T 2efr_A          106 SIDDLEDELYAQKLKYK  122 (155)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666666555555

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.78  E-value=5.4  Score=52.19  Aligned_cols=52  Identities=12%  Similarity=0.197  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557          148 EEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL  199 (545)
Q Consensus       148 ~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L  199 (545)
                      .+++..++.+..+...|.+.+.+++++-.++..-+.+.+..+..+...+..+
T Consensus      1934 ~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~ 1985 (3245)
T 3vkg_A         1934 AQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQL 1985 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444445555444444444444444444444443333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=95.58  E-value=0.29  Score=41.98  Aligned_cols=95  Identities=19%  Similarity=0.258  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557           11 EEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMA   90 (545)
Q Consensus        11 ~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~   90 (545)
                      .=|++++..|..+++.|..-.       ..+...+............+|.+|+.++..++.++......+..+...|...
T Consensus         5 d~iKkKm~~lk~e~e~a~d~a-------e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~   77 (101)
T 3u59_A            5 EAIKKKMQMLKLDKENAIDRA-------EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA   77 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888999888887765433       2334566666777777888899999999988888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 042557           91 KNETSEMAKTVESLKFELETVK  112 (545)
Q Consensus        91 ekEl~slqkelesLkseLe~~e  112 (545)
                      ++.......+|.+|.-.|..++
T Consensus        78 ek~~~~AE~evasLnRriqllE   99 (101)
T 3u59_A           78 EKKATDAEAEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc
Confidence            8777777777888777776654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.13  E-value=0.71  Score=54.57  Aligned_cols=21  Identities=10%  Similarity=0.197  Sum_probs=11.0

Q ss_pred             HHHHhhHHHHHHHHHHHHHHH
Q 042557          176 EKLLSSQTEHETYEAQIEDLR  196 (545)
Q Consensus       176 ekl~~~Q~Ele~~r~Eie~Lq  196 (545)
                      .++..++.+...++.++.+|.
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.12  E-value=2  Score=39.71  Aligned_cols=133  Identities=16%  Similarity=0.245  Sum_probs=75.3

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           72 TIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEE  151 (545)
Q Consensus        72 ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeE  151 (545)
                      ++++++.+|+.+..++...+..+..+..++..+       -+.+..+...+..++..-....+++..+...|..+-.+-+
T Consensus        22 EvaR~E~dLEraEERae~aE~k~~eLEeeL~~v-------~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE   94 (155)
T 2efr_A           22 EVARLKKLLERAEERAELSEGKSAELEEELKTV-------TNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE   94 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666555555555544444444444       4443334444444444444444444445555555544444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 042557          152 KSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTN  222 (545)
Q Consensus       152 kekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk  222 (545)
                      -+..-+..|...+..++..+...+.++...+.+|++.-.++..+.           .-+|.-+.+|.++++
T Consensus        95 ~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~-----------~~~~~~~~~~~~~~~  154 (155)
T 2efr_A           95 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELL-----------SKNYHLENEVARLKK  154 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cchHHHHHHHHHhhc
Confidence            445555566666777777777788888888778776666665542           234555677777664

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=94.98  E-value=0.79  Score=39.34  Aligned_cols=92  Identities=16%  Similarity=0.262  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557          217 IGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA  296 (545)
Q Consensus       217 ~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~  296 (545)
                      ++.+++++..++.+.+.+.+-...           ++..++.+......+-..+....++++.+.++.+.+...|..+..
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae~-----------~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~   72 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAEQ-----------AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED   72 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888888888888888776665           344444455555555555555666677777778888888888877


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhH
Q 042557          297 EVIYMQETLGQARAESMKLKESF  319 (545)
Q Consensus       297 e~~ea~e~~~ea~~e~~~Lk~~l  319 (545)
                      .+.++...+..+-+++..|.-.+
T Consensus        73 kLee~ek~~~~aE~ev~~L~Rri   95 (101)
T 3u1c_A           73 SLLFAEENAAKAESEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777776554

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=94.82  E-value=1.5  Score=38.59  Aligned_cols=90  Identities=11%  Similarity=0.117  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 042557           57 SEIAALKEKVGLLEMTIGRQKADLDESERK----HSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNL  132 (545)
Q Consensus        57 sEI~~LqeKve~LE~ev~~le~~leE~k~e----L~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L  132 (545)
                      ..+..|+.++..|..++..|+.++...+.+    +..+++++..++..-..|...|+.++...+.+...+..+.+.+.++
T Consensus         3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~   82 (111)
T 2v66_B            3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF   82 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence            345667777777777777777777766543    5557777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHH
Q 042557          133 LEEKHKLINELENS  146 (545)
Q Consensus       133 ~eel~kl~~ELE~~  146 (545)
                      ..++|....+.-.+
T Consensus        83 E~k~n~aiErnalL   96 (111)
T 2v66_B           83 EQRLNQAIERNAFL   96 (111)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777766654444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.47  E-value=1.5  Score=37.53  Aligned_cols=92  Identities=16%  Similarity=0.195  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557          217 IGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA  296 (545)
Q Consensus       217 ~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~  296 (545)
                      .+.+++++..++.+.+.+.+-...           ++..++.+......+-..+....++++.+.++...+...|..+..
T Consensus         4 md~iKkKm~~lk~e~e~a~d~ae~-----------~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~   72 (101)
T 3u59_A            4 MEAIKKKMQMLKLDKENAIDRAEQ-----------AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE   72 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888888888888776666           444455555555555556666666777777777888888888777


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhH
Q 042557          297 EVIYMQETLGQARAESMKLKESF  319 (545)
Q Consensus       297 e~~ea~e~~~ea~~e~~~Lk~~l  319 (545)
                      .+..+...+..+-++++.|.-.+
T Consensus        73 kLe~~ek~~~~AE~evasLnRri   95 (101)
T 3u59_A           73 KLEQAEKKATDAEAEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777887777777776554

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=94.02  E-value=3.8  Score=37.93  Aligned_cols=87  Identities=22%  Similarity=0.262  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557          252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL-KEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI  330 (545)
Q Consensus       252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L-k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~  330 (545)
                      ...++..++..+.+-......+|.....+..|.+.|-..| .+|=..+..|+..-..+..-|..|...+.+++.-|.+++
T Consensus        56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq  135 (154)
T 2ocy_A           56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLT  135 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888888889999999999999999999999999 778777777777777778889999999999999999999


Q ss_pred             HHHHHHHh
Q 042557          331 QENEELRA  338 (545)
Q Consensus       331 ~Ene~Lr~  338 (545)
                      ...-.|+.
T Consensus       136 ~ql~~LK~  143 (154)
T 2ocy_A          136 LQLKNLKK  143 (154)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887764

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.81  E-value=1.7  Score=37.33  Aligned_cols=72  Identities=22%  Similarity=0.257  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhH
Q 042557          252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL-KEVEAEVIYMQETLGQARAESMKLKESFLDKE  323 (545)
Q Consensus       252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L-k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE  323 (545)
                      .+.++..|+..+.+-......+|.....+..|.+.|-..| .+|=..+..|+-.-..+..-|.+|+..|.|++
T Consensus        24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~d   96 (97)
T 2eqb_B           24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKD   96 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4567777888888888999999999999999999999999 77777777777777777888999999998876

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.77  E-value=2.3  Score=50.33  Aligned_cols=15  Identities=33%  Similarity=0.353  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 042557          253 EEENSSLEKEINRLV  267 (545)
Q Consensus       253 eee~~~~~~e~~~l~  267 (545)
                      +++...++.+++.-+
T Consensus      1062 ~~~~~~~~~~~~~~~ 1076 (1080)
T 2dfs_A         1062 VEETKQLELDLNDER 1076 (1080)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444555554433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.40  E-value=1.4  Score=47.58  Aligned_cols=65  Identities=14%  Similarity=0.159  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557          135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL  199 (545)
Q Consensus       135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L  199 (545)
                      +...+..++.....+.......++.+......++...+..+.++..++.++..++.++..|...+
T Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333344433333334444444455555555555666666666666666666666655433

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=91.80  E-value=2.8  Score=37.01  Aligned_cols=78  Identities=22%  Similarity=0.310  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557          259 LEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRA  338 (545)
Q Consensus       259 ~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~  338 (545)
                      |+.++.+..+.|+.+|.++..-..=..-|++.|+.-.+..   +..+.++..++..|+..|.|.+.++..+..+|+.|.+
T Consensus        30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~  106 (121)
T 3mq7_A           30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV  106 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence            5566677778888888888888888888888885533333   6679999999999999999999999999999998665


Q ss_pred             h
Q 042557          339 R  339 (545)
Q Consensus       339 ~  339 (545)
                      +
T Consensus       107 r  107 (121)
T 3mq7_A          107 R  107 (121)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.56  E-value=1.8  Score=38.52  Aligned_cols=75  Identities=17%  Similarity=0.242  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHH
Q 042557          160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKIS  234 (545)
Q Consensus       160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s  234 (545)
                      -..+|.....++.+.+..+..++.+++.++.....|..+|.+++.+|...+..+...|..+...+.+++.++...
T Consensus        27 ~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q  101 (129)
T 3tnu_B           27 HGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL  101 (129)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            345566777888888999999999999999999999999999999999877777776666665555544444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=91.53  E-value=7.1  Score=34.62  Aligned_cols=8  Identities=13%  Similarity=0.314  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 042557          162 SALHEVSV  169 (545)
Q Consensus       162 ~AL~E~e~  169 (545)
                      ..|+++..
T Consensus        83 ~~l~el~~   90 (129)
T 2fxo_A           83 AKVKEMNK   90 (129)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.69  E-value=1.5  Score=39.69  Aligned_cols=87  Identities=21%  Similarity=0.235  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557          252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL-KEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI  330 (545)
Q Consensus       252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L-k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~  330 (545)
                      ...++..++..+.+-......+|.....+..|.+.|-..| .+|=..+..|+-.-..+..-|..|...+.+++.-|.+++
T Consensus        44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq  123 (135)
T 2e7s_A           44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLT  123 (135)
T ss_dssp             HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC----
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677788888888888999999999999999999999999 778777777777777778889999999999999999988


Q ss_pred             HHHHHHHh
Q 042557          331 QENEELRA  338 (545)
Q Consensus       331 ~Ene~Lr~  338 (545)
                      ...-+|+.
T Consensus       124 ~QL~~LK~  131 (135)
T 2e7s_A          124 LQLKNLKK  131 (135)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            87777654

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.39  E-value=11  Score=34.82  Aligned_cols=51  Identities=22%  Similarity=0.307  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          151 EKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE  207 (545)
Q Consensus       151 Ekekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~  207 (545)
                      ......+++|+++|=+      ++-.=+...+.+...+......|+..|.+++..+.
T Consensus        82 ~~ie~ElEeLTasLFe------EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~  132 (154)
T 2ocy_A           82 DKLNKEVEDLTASLFD------EANNMVADARKEKYAIEILNKRLTEQLREKDTLLD  132 (154)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555432      22222222333444455556667777777766654

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=89.96  E-value=4.5  Score=33.10  Aligned_cols=54  Identities=17%  Similarity=0.334  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           61 ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE  114 (545)
Q Consensus        61 ~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee  114 (545)
                      .+++|+..+..+.......++.+...+....+.......+|.+|...|..++.+
T Consensus         3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e   56 (81)
T 1ic2_A            3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE   56 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            344555555554444444444444444444444444444444444444444444

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=89.57  E-value=5.4  Score=35.44  Aligned_cols=76  Identities=14%  Similarity=0.158  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHH
Q 042557          160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISK  235 (545)
Q Consensus       160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~  235 (545)
                      -..+|.....++.+.+..+..++.+++.++.....|..+|.+++.+|...+..+...|..+-..+.+++.++...+
T Consensus        29 ~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql  104 (131)
T 3tnu_A           29 NSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQN  104 (131)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777888889999999999999999999999999999999998777777766666655555444444433

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=89.32  E-value=3.4  Score=37.42  Aligned_cols=106  Identities=16%  Similarity=0.211  Sum_probs=59.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 042557            3 ESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDE   82 (545)
Q Consensus         3 e~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE   82 (545)
                      +.++..+..-|..++..+...    ..|..+-. .-..+...| .+-++|-.+..++..|..++..+..++..++.++..
T Consensus        27 ee~L~~vA~~vd~km~ei~~~----~~~~~l~~-~r~aVLaAL-NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~  100 (138)
T 3hnw_A           27 EEYLQRVASYINNKITEFNKE----ESYRRMSA-ELRTDMMYL-NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIA  100 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC----HHHHTSCH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----cCCCCCCH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777776532    11222222 111111111 122334445555666666666666666666766666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           83 SERKHSMAKNETSEMAKTVESLKFELETVKEE  114 (545)
Q Consensus        83 ~k~eL~~~ekEl~slqkelesLkseLe~~eee  114 (545)
                      +...+..+.+++..++.++..|..++..++.+
T Consensus       101 ~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~  132 (138)
T 3hnw_A          101 AQIKAESSAKEIKELKSEINKYQKNIVKLETE  132 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666555444

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=89.30  E-value=6.6  Score=33.16  Aligned_cols=64  Identities=16%  Similarity=0.227  Sum_probs=40.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           49 NDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE  114 (545)
Q Consensus        49 k~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee  114 (545)
                      +..+..+|...+.-=++|+.|+.+...|+.+|......-  ...-..-+..+|..|+..|..+..+
T Consensus         8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~--~~~~~~~ye~~i~~Lr~~i~~~~~e   71 (93)
T 3s4r_A            8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG--KSRLGDLYEEEMRELRRQVDQLTND   71 (93)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888888899999998888888887765431  1122233455555555555444333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.12  E-value=4.8  Score=36.41  Aligned_cols=71  Identities=18%  Similarity=0.160  Sum_probs=47.8

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           76 QKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENS  146 (545)
Q Consensus        76 le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~  146 (545)
                      +-.++-.++.....++.++..+.+++++|+.++-.+...+..+......+..++..|..++.++..++...
T Consensus        66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~  136 (138)
T 3hnw_A           66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDS  136 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45555566666666666666677777777777777666666666666677777777777777777666543

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=87.19  E-value=15  Score=32.21  Aligned_cols=70  Identities=19%  Similarity=0.195  Sum_probs=42.5

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhH
Q 042557          247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKE  323 (545)
Q Consensus       247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE  323 (545)
                      ..|..++.++..++.....+..-++..|-.       |..|-..-+.+-+.+.+....++.|--.|+-|-.-+.+|+
T Consensus        35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~-------NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe  104 (111)
T 2v66_B           35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQA-------NDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKE  104 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666666666644433       5556555566666666666666666666666655555444

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.30  E-value=15  Score=31.44  Aligned_cols=41  Identities=15%  Similarity=0.248  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557          159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL  199 (545)
Q Consensus       159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L  199 (545)
                      +....+..+...+...+.....+......+..|++.|-++|
T Consensus        23 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL   63 (97)
T 2eqb_B           23 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   63 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555555666666667777777777777

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=86.11  E-value=17  Score=32.00  Aligned_cols=71  Identities=17%  Similarity=0.097  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 042557           11 EEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESE   84 (545)
Q Consensus        11 ~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k   84 (545)
                      .|..+--+.|+.|+-.|.....-....-..--.=+..+++.|....++.   +.++..|+.+|..|...|.++.
T Consensus        21 ~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~   91 (121)
T 3mq7_A           21 MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDAS   91 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777889999999987776666444444455566666666666555   4455555555555444444433

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=85.72  E-value=18  Score=31.94  Aligned_cols=68  Identities=10%  Similarity=0.236  Sum_probs=28.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           46 EGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA  116 (545)
Q Consensus        46 E~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~  116 (545)
                      ...+..+.+++-.|..|+..+..+......|+..+.+......   .++..++..|..|..+|..++.++.
T Consensus        32 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~e~~   99 (129)
T 3tnu_B           32 RNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAKQDMA   99 (129)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3334444444444444444444444444444444444333332   2234455555555555555544433

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=85.58  E-value=12  Score=30.43  Aligned_cols=68  Identities=18%  Similarity=0.263  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557          133 LEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE  207 (545)
Q Consensus       133 ~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~  207 (545)
                      ..+++.+..+.+.+..+.+...       ..|.........+...+..++..+..+..+++.....|..+..++.
T Consensus         5 kkKm~~lk~e~d~a~~~~~~~e-------~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe   72 (81)
T 1ic2_A            5 KKKMQMLKLDKENALDRAEQAE-------ADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555544444333       3333333344444444444444555555555555555555555544

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=85.13  E-value=16  Score=33.39  Aligned_cols=61  Identities=16%  Similarity=0.213  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557          134 EEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED  194 (545)
Q Consensus       134 eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~  194 (545)
                      +++..+...|..++..-+.+-.-+++.+-.|.-++..+..+..++......+..+..++..
T Consensus        52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~  112 (147)
T 2b9c_A           52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKT  112 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444455555555555555555555555554444444444333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=83.32  E-value=14  Score=30.58  Aligned_cols=82  Identities=22%  Similarity=0.226  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHH
Q 042557          257 SSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEEL  336 (545)
Q Consensus       257 ~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~L  336 (545)
                      ..|+.++..+...-...+-++..++...+.+|.++..-.+-...+.-.+.-++-..-.+.=...|+|..+.+++.|..-|
T Consensus         3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A            3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444446666677777777444444444444444555555556667789999999999999888


Q ss_pred             Hh
Q 042557          337 RA  338 (545)
Q Consensus       337 r~  338 (545)
                      |.
T Consensus        83 kk   84 (86)
T 3swk_A           83 KK   84 (86)
T ss_dssp             TT
T ss_pred             hh
Confidence            74

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=83.28  E-value=12  Score=40.60  Aligned_cols=37  Identities=11%  Similarity=0.147  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           80 LDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA  116 (545)
Q Consensus        80 leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~  116 (545)
                      +..++..++..-..++.||.-|..++.+|..++.+++
T Consensus       119 IqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId  155 (562)
T 3ghg_A          119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333335556677777777777777666644

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=83.14  E-value=13  Score=32.09  Aligned_cols=72  Identities=19%  Similarity=0.117  Sum_probs=51.9

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           45 LEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA  116 (545)
Q Consensus        45 LE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~  116 (545)
                      |..+-.++..+.-..+.|.....++--+|..|+-.+++....+.++++++....+++..++..+..+..++.
T Consensus         4 L~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~   75 (103)
T 4h22_A            4 LAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA   75 (103)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677777778888888888888888888888888888888888888888777777777666555533

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=81.70  E-value=14  Score=32.75  Aligned_cols=18  Identities=6%  Similarity=0.108  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 042557          159 SLASALHEVSVEAREAKE  176 (545)
Q Consensus       159 eLa~AL~E~e~E~eeake  176 (545)
                      ++...|..++.++.+++.
T Consensus        81 ~~q~~i~~lE~eL~~~r~   98 (131)
T 3tnu_A           81 QIQEMIGSVEEQLAQLRC   98 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444444

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=81.67  E-value=20  Score=33.03  Aligned_cols=55  Identities=7%  Similarity=0.075  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHH
Q 042557          281 KEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEE  335 (545)
Q Consensus       281 ~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~  335 (545)
                      ..++..|+..+++.+.++.+=...++..+.+...|.-.+.-.|..+..+..||..
T Consensus        74 ~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~  128 (152)
T 3a7p_A           74 QKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ  128 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444444444444444444

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=81.01  E-value=24  Score=29.79  Aligned_cols=70  Identities=11%  Similarity=0.112  Sum_probs=33.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557           47 GNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA  116 (545)
Q Consensus        47 ~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~  116 (545)
                      .+...|..+..+-+.|-..+..++++-..+...|..+..+......+...+..+.+.+...+-.+.+++.
T Consensus         8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~   77 (96)
T 3q8t_A            8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELK   77 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555555555555555555555555555444454544444455554444444444444433

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=80.77  E-value=8.2  Score=34.18  Aligned_cols=46  Identities=24%  Similarity=0.177  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHH
Q 042557          215 HEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLV  267 (545)
Q Consensus       215 ~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~  267 (545)
                      ..|+.|+..++.++.+++....+...       .|..+...+..|..+++.-+
T Consensus        15 ~~Ie~Lkreie~lk~ele~l~~E~q~-------~v~ql~~~i~~Le~eL~e~r   60 (120)
T 3i00_A           15 HLIERLYREISGLKAQLENMKTESQR-------VVLQLKGHVSELEADLAEQQ   60 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            45777777777777777777776666       34445555555555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00