Citrus Sinensis ID: 042564
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 498 | 2.2.26 [Sep-21-2011] | |||||||
| Q43621 | 498 | Glutathione reductase, cy | N/A | no | 0.997 | 0.997 | 0.835 | 0.0 | |
| P48641 | 499 | Glutathione reductase, cy | yes | no | 0.997 | 0.995 | 0.81 | 0.0 | |
| O04955 | 502 | Glutathione reductase, cy | N/A | no | 0.997 | 0.990 | 0.805 | 0.0 | |
| Q43154 | 489 | Glutathione reductase, ch | N/A | no | 0.967 | 0.985 | 0.848 | 0.0 | |
| P48642 | 496 | Glutathione reductase, cy | yes | no | 0.995 | 1.0 | 0.746 | 0.0 | |
| P80461 | 557 | Glutathione reductase, ch | N/A | no | 0.941 | 0.842 | 0.550 | 1e-146 | |
| P27456 | 552 | Glutathione reductase, ch | N/A | no | 0.943 | 0.851 | 0.549 | 1e-146 | |
| P42770 | 565 | Glutathione reductase, ch | no | no | 0.953 | 0.840 | 0.529 | 1e-144 | |
| P48640 | 544 | Glutathione reductase, ch | no | no | 0.923 | 0.845 | 0.551 | 1e-142 | |
| P48639 | 449 | Glutathione reductase OS= | N/A | no | 0.889 | 0.986 | 0.487 | 1e-116 |
| >sp|Q43621|GSHRC_PEA Glutathione reductase, cytosolic OS=Pisum sativum PE=2 SV=1 | Back alignment and function desciption |
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Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/499 (83%), Positives = 460/499 (92%), Gaps = 2/499 (0%)
Query: 1 MARKMLNDGELSQPNQEEQTH-FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPI 59
MARKMLNDGE EEQ +DFDLF+IGAGSGGVRAARFS+NFGAKVGICELPFHPI
Sbjct: 1 MARKMLNDGEPDLKKGEEQGKVYDFDLFIIGAGSGGVRAARFSSNFGAKVGICELPFHPI 60
Query: 60 SSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTD 119
SSE IGGVGGTCVIRGCVPKKILVYGAS+GGEL+DAR++GWE++E +DF+WKKLLQKKTD
Sbjct: 61 SSETIGGVGGTCVIRGCVPKKILVYGASYGGELQDARNFGWELNENVDFNWKKLLQKKTD 120
Query: 120 EILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179
EI RLNGIYKRLLSNAGVKL+EGEGKI PNEVEVTQLDGTKLSYSAKHILIATGSRAQR
Sbjct: 121 EINRLNGIYKRLLSNAGVKLFEGEGKIASPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 180
Query: 180 APIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG 239
IPGQEL ITSDEALSLEE PKRAV+LGGGYIAVEFASIWRGMGS+V+L+FRKELPLRG
Sbjct: 181 PNIPGQELGITSDEALSLEEFPKRAVILGGGYIAVEFASIWRGMGSSVNLVFRKELPLRG 240
Query: 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299
FDDEMRAVVARNLEGRGINLHPRT + +LIK+E+G+KVITDHGEE++ADVVLFATGR+PN
Sbjct: 241 FDDEMRAVVARNLEGRGINLHPRTNLAQLIKTEDGIKVITDHGEELIADVVLFATGRSPN 300
Query: 300 TKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359
+KRLNL+ VGVE D+ GA+ VDE SRTN+PSIWAVGDVTNR+NLTPVALME + FAKTVF
Sbjct: 301 SKRLNLEKVGVEFDKAGAIVVDEYSRTNIPSIWAVGDVTNRLNLTPVALMEASLFAKTVF 360
Query: 360 GGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEK 419
GGQ KPDY D+P AVFCIPPLSVVGLSEEQA+EQ KGD+L+FTS+FNPM+NTISGRQEK
Sbjct: 361 GGQASKPDYNDIPYAVFCIPPLSVVGLSEEQAVEQTKGDVLIFTSTFNPMKNTISGRQEK 420
Query: 420 TVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479
TVMKLVVDA+T+KVLGASMCGP+APEI+QGIA+A+KCGATKAQFDSTVGIHPSSAEEFVT
Sbjct: 421 TVMKLVVDAQTDKVLGASMCGPDAPEIVQGIAIAIKCGATKAQFDSTVGIHPSSAEEFVT 480
Query: 480 MRSVTRRVAAASSNPKTNL 498
MRS TRRV PKTNL
Sbjct: 481 MRSETRRVTGGVK-PKTNL 498
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Maintains high levels of reduced glutathione in the cytosol. May play a role in the restoration of the post-stress redox state of the cytosolic glutathione pool. Pisum sativum (taxid: 3888) EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 7 |
| >sp|P48641|GSHRC_ARATH Glutathione reductase, cytosolic OS=Arabidopsis thaliana GN=At3g24170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/500 (81%), Positives = 457/500 (91%), Gaps = 3/500 (0%)
Query: 1 MARKMLNDGELSQPNQEEQ--THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHP 58
MARKML DGE+ + +E TH+DFDLFVIGAGSGGVRAARFSAN GAKVGICELPFHP
Sbjct: 1 MARKMLVDGEIDKVAADEANATHYDFDLFVIGAGSGGVRAARFSANHGAKVGICELPFHP 60
Query: 59 ISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKT 118
ISSE IGGVGGTCVIRGCVPKKILVYGA++GGELEDA++YGWE++EK+DF WKKLLQKKT
Sbjct: 61 ISSEEIGGVGGTCVIRGCVPKKILVYGATYGGELEDAKNYGWEINEKVDFTWKKLLQKKT 120
Query: 119 DEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178
DEILRLN IYKRLL+NA VKLYEGEG++VGPNEVEV Q+DGTK+SY+AKHILIATGSRAQ
Sbjct: 121 DEILRLNNIYKRLLANAAVKLYEGEGRVVGPNEVEVRQIDGTKISYTAKHILIATGSRAQ 180
Query: 179 RAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR 238
+ IPG ELAITSDEALSLEE PKRA+VLGGGYIAVEFASIWRGMG+TVDL FRKELPLR
Sbjct: 181 KPNIPGHELAITSDEALSLEEFPKRAIVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR 240
Query: 239 GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298
GFDDEMRA+VARNLEGRG+NLHP+T++ +L K+++G+KVI+ HGEE VADVVLFATGR+P
Sbjct: 241 GFDDEMRALVARNLEGRGVNLHPQTSLTQLTKTDQGIKVISSHGEEFVADVVLFATGRSP 300
Query: 299 NTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358
NTKRLNL+AVGVE+DQ GAVKVDE SRTN+PSIWAVGD TNR+NLTPVALME TCFA T
Sbjct: 301 NTKRLNLEAVGVELDQAGAVKVDEYSRTNIPSIWAVGDATNRINLTPVALMEATCFANTA 360
Query: 359 FGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQE 418
FGG+P K +Y +V CAVFCIPPL+VVGLSEE+A+EQ GDILVFTS FNPM+NTISGRQE
Sbjct: 361 FGGKPTKAEYSNVACAVFCIPPLAVVGLSEEEAVEQATGDILVFTSGFNPMKNTISGRQE 420
Query: 419 KTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFV 478
KT+MKL+VD +++KV+GASMCGP+A EIMQGIA+ALKCGATKAQFDSTVGIHPSSAEEFV
Sbjct: 421 KTLMKLIVDEKSDKVIGASMCGPDAAEIMQGIAIALKCGATKAQFDSTVGIHPSSAEEFV 480
Query: 479 TMRSVTRRVAAASSNPKTNL 498
TMRSVTRR+ A PKTNL
Sbjct: 481 TMRSVTRRI-AHKPKPKTNL 499
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Maintains high levels of reduced glutathione in the cytosol. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|O04955|GSHRC_BRARP Glutathione reductase, cytosolic OS=Brassica rapa subsp. pekinensis GN=GR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/503 (80%), Positives = 458/503 (91%), Gaps = 6/503 (1%)
Query: 1 MARKMLNDGELSQPNQEEQT-----HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 55
MARKML+DGEL++ + H+DFDLFVIGAGSGGVRAARFSAN GAKVGICELP
Sbjct: 1 MARKMLSDGELNKAAAAGEEATTETHYDFDLFVIGAGSGGVRAARFSANNGAKVGICELP 60
Query: 56 FHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQ 115
FHPISSE IGGVGGTCVIRGCVPKKILVYGA++GGELEDAR+YGWE++ +DF+WKKLLQ
Sbjct: 61 FHPISSEEIGGVGGTCVIRGCVPKKILVYGATYGGELEDARNYGWEINGNVDFNWKKLLQ 120
Query: 116 KKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS 175
KKTDEILRLN IYKRLL+NA VKLYEGEG+IVGPNEVEV Q+DGTK+SY+AKHILIATGS
Sbjct: 121 KKTDEILRLNNIYKRLLANAAVKLYEGEGRIVGPNEVEVRQIDGTKISYTAKHILIATGS 180
Query: 176 RAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235
RAQ+ IPG ELAITSDEALSLEE PKRA+VLGGGYIAVEFASIWRGMG+TVDL FRKEL
Sbjct: 181 RAQKPNIPGHELAITSDEALSLEEFPKRAIVLGGGYIAVEFASIWRGMGATVDLFFRKEL 240
Query: 236 PLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295
PLRGFDDEMRA+VARNLEGRGINLHP+T++ ELIK+++G+KVI+ HGEE VADVVLFATG
Sbjct: 241 PLRGFDDEMRALVARNLEGRGINLHPQTSLAELIKTDDGIKVISSHGEEFVADVVLFATG 300
Query: 296 RAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFA 355
R PNTKRLNL+AVGVE+DQ GAVKVDE SRTN+PSIWAVGD TNR+NLTPVALME TCFA
Sbjct: 301 RIPNTKRLNLEAVGVELDQAGAVKVDEYSRTNIPSIWAVGDATNRINLTPVALMEATCFA 360
Query: 356 KTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISG 415
TVFGG+P K DY +V CAVFCIPPL+VVGLSEE+A+E+ GDILVFTS FNPM+NTISG
Sbjct: 361 NTVFGGKPAKADYTNVACAVFCIPPLAVVGLSEEEAVEKATGDILVFTSGFNPMKNTISG 420
Query: 416 RQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
RQEK++MKL+VD +T+KV+GASMCGP+A EIMQGIA+ALKCGATKAQFDSTVGIHPSSAE
Sbjct: 421 RQEKSLMKLIVDEKTDKVIGASMCGPDAAEIMQGIAIALKCGATKAQFDSTVGIHPSSAE 480
Query: 476 EFVTMRSVTRRVAAASSNPKTNL 498
EFVTMR+VTRR+ A + P+T+L
Sbjct: 481 EFVTMRTVTRRI-AYKAKPQTSL 502
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Maintains high levels of reduced glutathione in the cytosol. Brassica rapa subsp. pekinensis (taxid: 51351) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q43154|GSHRP_SPIOL Glutathione reductase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=1 | Back alignment and function description |
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Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/483 (84%), Positives = 449/483 (92%), Gaps = 1/483 (0%)
Query: 16 QEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG 75
+++ ++DFDLFVIGAGSGGVRAARFSAN GAKVGICELPFHPISSEVIGGVGGTCVIRG
Sbjct: 8 EDDAANYDFDLFVIGAGSGGVRAARFSANLGAKVGICELPFHPISSEVIGGVGGTCVIRG 67
Query: 76 CVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA 135
CVPKKILVYGASFGGELEDA++YGWE++EKIDF+WKKLLQKKTDEI+RLN IYKRLLSNA
Sbjct: 68 CVPKKILVYGASFGGELEDAKNYGWELNEKIDFNWKKLLQKKTDEIIRLNNIYKRLLSNA 127
Query: 136 GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEAL 195
GVKLYEGEGKIVGPNEV+VTQLDGTKLSYSAKHILIATGSRAQR IPGQELAITSDEAL
Sbjct: 128 GVKLYEGEGKIVGPNEVQVTQLDGTKLSYSAKHILIATGSRAQRPNIPGQELAITSDEAL 187
Query: 196 SLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255
SLEE PKR V+LGGGYI+VEFASIWRGMG+ V+L FRKELPLRGFDDEMRA VARNLEGR
Sbjct: 188 SLEEFPKRVVILGGGYISVEFASIWRGMGADVNLCFRKELPLRGFDDEMRAAVARNLEGR 247
Query: 256 GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQT 315
G+N+HPRTT+ EL+K++ GV TDHGEEI ADVVLFATGR+PNTKRLNL+A+GVE+D+T
Sbjct: 248 GVNVHPRTTLTELVKTDGGVVARTDHGEEIEADVVLFATGRSPNTKRLNLEALGVELDRT 307
Query: 316 GAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAV 375
GAVKVDE SRT+VPSIWA+GDVTNRMNLTPVALMEGTCFAKTVFGGQ KPDY ++ CAV
Sbjct: 308 GAVKVDEYSRTSVPSIWAIGDVTNRMNLTPVALMEGTCFAKTVFGGQNSKPDYSNIACAV 367
Query: 376 FCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLG 435
F IPPL+VVGLSEEQAIEQ GDILVFTSSFNPM+NTISGRQEKT+MKLVVDAET+KVLG
Sbjct: 368 FSIPPLAVVGLSEEQAIEQASGDILVFTSSFNPMKNTISGRQEKTIMKLVVDAETDKVLG 427
Query: 436 ASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSNPK 495
ASMCGP+A EIMQGIA+ALK GATKAQFDSTVGIHPS+AEEFVTMR +RRV A PK
Sbjct: 428 ASMCGPDAAEIMQGIAIALKFGATKAQFDSTVGIHPSAAEEFVTMREPSRRVPGA-GKPK 486
Query: 496 TNL 498
TNL
Sbjct: 487 TNL 489
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Maintains high levels of reduced glutathione in the chloroplast. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|P48642|GSHRC_ORYSJ Glutathione reductase, cytosolic OS=Oryza sativa subsp. japonica GN=GRC2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/498 (74%), Positives = 437/498 (87%), Gaps = 2/498 (0%)
Query: 1 MARKMLNDGELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPIS 60
MARKML D E+ + + +D+DLFVIGAGSGGVR +R SA+FGAKV ICELPFHPIS
Sbjct: 1 MARKMLKDEEV-EVAVTDGGSYDYDLFVIGAGSGGVRGSRTSASFGAKVAICELPFHPIS 59
Query: 61 SEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDE 120
S+ GG GGTCVIRGCVPKKILVYG+SF GE EDA+++GWE++ I+F+WK+LL+ KT E
Sbjct: 60 SDWQGGHGGTCVIRGCVPKKILVYGSSFRGEFEDAKNFGWEINGDINFNWKRLLENKTQE 119
Query: 121 ILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180
I+RLNG+Y+R+L N+GV + EG G +V + VEVT+ DG+K Y+AKHILIATGSRAQR
Sbjct: 120 IVRLNGVYQRILGNSGVTMIEGAGSLVDAHTVEVTKPDGSKQRYTAKHILIATGSRAQRV 179
Query: 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF 240
IPG+ELAITSDEALSLEELPKRAV+LGGGYIAVEFASIW+GMG+ VDL +RKELPLRGF
Sbjct: 180 NIPGKELAITSDEALSLEELPKRAVILGGGYIAVEFASIWKGMGAHVDLFYRKELPLRGF 239
Query: 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300
DDEMR VVA NLEGRGI LHP T + EL K+ +G+KV+TD GEEI+ADVVLFATGR PN+
Sbjct: 240 DDEMRTVVASNLEGRGIRLHPGTNLSELSKTADGIKVVTDKGEEIIADVVLFATGRTPNS 299
Query: 301 KRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360
+RLNL+A GVEVD GA+KVD+ SRT+VP+IWAVGDVTNR+NLTPVALME TCF+KTVFG
Sbjct: 300 QRLNLEAAGVEVDNIGAIKVDDYSRTSVPNIWAVGDVTNRINLTPVALMEATCFSKTVFG 359
Query: 361 GQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT 420
GQP KPDYRDVPCAVF IPPLSVVGLSE+QA+E+ K D+LV+TSSFNPM+N+IS RQEKT
Sbjct: 360 GQPTKPDYRDVPCAVFSIPPLSVVGLSEQQALEEAKSDVLVYTSSFNPMKNSISKRQEKT 419
Query: 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480
VMKLVVD+ET+KVLGASMCGP+APEI+QG+AVALKCGATKA FDSTVGIHPS+AEEFVTM
Sbjct: 420 VMKLVVDSETDKVLGASMCGPDAPEIIQGMAVALKCGATKATFDSTVGIHPSAAEEFVTM 479
Query: 481 RSVTRRVAAASSNPKTNL 498
R++TRRV + SS PKTNL
Sbjct: 480 RTLTRRV-SPSSKPKTNL 496
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Maintains high levels of reduced glutathione in the cytosol. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|P80461|GSHRP_TOBAC Glutathione reductase, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GOR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 518 bits (1335), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/476 (55%), Positives = 340/476 (71%), Gaps = 7/476 (1%)
Query: 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKK 80
H+DFDLF IGAGSGGVRA+RF++NFGA V +CELPF ISS+ GGVGGTCV+RGCVPKK
Sbjct: 77 HYDFDLFTIGAGSGGVRASRFASNFGASVAVCELPFSTISSDSTGGVGGTCVLRGCVPKK 136
Query: 81 ILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLY 140
+LVY + + E E++ +GW + FDW L+ K E+ RL GIYK +L NAGV L
Sbjct: 137 LLVYASKYSHEFEESCGFGWNYDVEPRFDWSTLIANKNAELQRLTGIYKNILKNAGVTLI 196
Query: 141 EGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEEL 200
EG GK+V P+ V+V DG KL YSAK+ILI+ G R IPG E AI SD AL L
Sbjct: 197 EGRGKVVDPHTVDV---DG-KL-YSAKNILISVGGRPFIPDIPGSEYAIDSDAALDLPTK 251
Query: 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260
P + ++GGGYIA+EFA I+ G+ S V + R++ LRGFD+E+R V + RGI H
Sbjct: 252 PNKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIRDFVGEQMSLRGIEFH 311
Query: 261 PRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319
+ + ++KS +G + + T G ++FATGR PNTK L L+ VGV++ + GA++
Sbjct: 312 TEESPQAIVKSADGSLSLKTSRGTVEGFSHIMFATGRRPNTKNLGLETVGVKMTKNGAIE 371
Query: 320 VDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIP 379
VDE SRT+VPSIWAVGDVT+R+NLTPVALMEG AKT+F +P KPDYR+VP AVF P
Sbjct: 372 VDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTIFAHEPTKPDYRNVPAAVFSQP 431
Query: 380 PLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMC 439
P+ VGL EEQAI++ GD+ V+T++F P++ TISG ++ MKL+V A+T KVLG MC
Sbjct: 432 PIGQVGLMEEQAIKE-FGDVDVYTANFRPLKATISGLPDRVFMKLIVCAKTSKVLGLHMC 490
Query: 440 GPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSNPK 495
G +APEI+QG A+A+K G TKA FD+TVGIHP+SAEEFVTMR+ TR+V ++ S K
Sbjct: 491 GDDAPEIVQGFAIAVKAGLTKADFDATVGIHPTSAEEFVTMRTPTRKVRSSPSEGK 546
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Maintains high levels of reduced glutathione in the chloroplast. Nicotiana tabacum (taxid: 4097) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|P27456|GSHRP_PEA Glutathione reductase, chloroplastic/mitochondrial OS=Pisum sativum GN=GR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 517 bits (1331), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/477 (54%), Positives = 335/477 (70%), Gaps = 7/477 (1%)
Query: 12 SQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTC 71
SQ + +DFDLF IGAGSGGVRA+RF++NFGA +CELPF ISS+ GGVGGTC
Sbjct: 62 SQNGADPARQYDFDLFTIGAGSGGVRASRFASNFGASSAVCELPFSTISSDTTGGVGGTC 121
Query: 72 VIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRL 131
VIRGCVPKK+LVY + F E E++ +GW + DW L+ K E+ RL GIYK
Sbjct: 122 VIRGCVPKKLLVYASKFSHEFEESNGFGWRYDSEPKHDWSSLIANKNAELQRLTGIYKNT 181
Query: 132 LSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITS 191
L NAGVKL EG GKIV + V+V DG KL YSAKHIL++ G R IPG+E AI S
Sbjct: 182 LKNAGVKLIEGRGKIVDAHTVDV---DG-KL-YSAKHILVSVGGRPFIPDIPGKEYAIDS 236
Query: 192 DEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARN 251
D AL L P++ ++GGGYIA+EFA I+ G+ S V + R++ LRGFD+E+R VA N
Sbjct: 237 DAALDLPSKPQKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIRDFVAEN 296
Query: 252 LEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGV 310
+ RGI H + + K+ +G + + T+ G E ++FATGR+PNTK L L++VGV
Sbjct: 297 MALRGIEFHTEESPVAITKAADGSLSLKTNKGTEEGFSHIMFATGRSPNTKDLGLESVGV 356
Query: 311 EVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRD 370
+V + G+++VDE S+T+VPSIWA+GD TNR+NLTPVALMEG AKT+F +P KPDYR
Sbjct: 357 KVAKDGSIEVDEYSQTSVPSIWAIGDATNRVNLTPVALMEGVALAKTLFQNEPTKPDYRA 416
Query: 371 VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAET 430
+P AVF PP+ VGL+EEQA EQ GDI VFT++F PM+ T+SG ++ MKL+V AET
Sbjct: 417 IPSAVFSQPPIGGVGLTEEQAAEQ-YGDIDVFTANFRPMKATLSGLPDRVFMKLIVSAET 475
Query: 431 EKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRV 487
VLG MCG +A EI QG AV +K G TKA FD+TVGIHP++AEEFVTMR+ TR+V
Sbjct: 476 NVVLGLHMCGEDAAEIAQGFAVGIKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKV 532
|
Maintains high levels of reduced glutathione in the chloroplast. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|P42770|GSHRP_ARATH Glutathione reductase, chloroplastic OS=Arabidopsis thaliana GN=EMB2360 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 255/482 (52%), Positives = 334/482 (69%), Gaps = 7/482 (1%)
Query: 17 EEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGC 76
E H+DFDLF IGAGSGGVRA+RF+ +FGA +CELPF ISS+ GGVGGTCV+RGC
Sbjct: 81 ESDRHYDFDLFTIGAGSGGVRASRFATSFGASAAVCELPFSTISSDTAGGVGGTCVLRGC 140
Query: 77 VPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAG 136
VPKK+LVY + + E ED+ +GW+ + DW L+ K E+ RL GIYK +LS A
Sbjct: 141 VPKKLLVYASKYSHEFEDSHGFGWKYETEPSHDWTTLIANKNAELQRLTGIYKNILSKAN 200
Query: 137 VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALS 196
VKL EG GK++ P+ V+V DG Y+ ++ILIA G R IPG+E AI SD AL
Sbjct: 201 VKLIEGRGKVIDPHTVDV---DGK--IYTTRNILIAVGGRPFIPDIPGKEFAIDSDAALD 255
Query: 197 LEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256
L PK+ ++GGGYIA+EFA I+ G+ V + R++ LRGFD+++R V + RG
Sbjct: 256 LPSKPKKIAIVGGGYIALEFAGIFNGLNCEVHVFIRQKKVLRGFDEDVRDFVGEQMSLRG 315
Query: 257 INLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQT 315
I H + + +IK+ +G + T G V+FATGR PNTK L L+ VGV++ +
Sbjct: 316 IEFHTEESPEAIIKAGDGSFSLKTSKGTVEGFSHVMFATGRKPNTKNLGLENVGVKMAKN 375
Query: 316 GAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAV 375
GA++VDE S+T+VPSIWAVGDVT+R+NLTPVALMEG AKT+F +P KPDYR VPCAV
Sbjct: 376 GAIEVDEYSQTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQNEPTKPDYRAVPCAV 435
Query: 376 FCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLG 435
F PP+ VGL+EEQAIEQ GD+ V+TS+F P++ T+SG ++ MKL+V A T KVLG
Sbjct: 436 FSQPPIGTVGLTEEQAIEQ-YGDVDVYTSNFRPLKATLSGLPDRVFMKLIVCANTNKVLG 494
Query: 436 ASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSNPK 495
MCG ++PEI+QG VA+K G TKA FD+TVG+HP++AEEFVTMR+ TR+ SS K
Sbjct: 495 VHMCGEDSPEIIQGFGVAVKAGLTKADFDATVGVHPTAAEEFVTMRAPTRKFRKDSSEGK 554
Query: 496 TN 497
+
Sbjct: 555 AS 556
|
Maintains high levels of reduced glutathione in the chloroplast. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|P48640|GSHRP_SOYBN Glutathione reductase, chloroplastic OS=Glycine max GN=GR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/468 (55%), Positives = 330/468 (70%), Gaps = 8/468 (1%)
Query: 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKK 80
H+DFDLF IGAGSGGVRA RF+AN+GA V ICELPF ISSE G VGGTCVIRGCVPKK
Sbjct: 64 HYDFDLFTIGAGSGGVRARRFAANYGASVAICELPFSTISSETTG-VGGTCVIRGCVPKK 122
Query: 81 ILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLY 140
+LVY + F E E++ +GW + DW + K E+ RL GIYK +L+NAGVKL
Sbjct: 123 LLVYASKFSHEFEESNGFGWRYDSEPKHDWSSFIANKNAELQRLTGIYKNILNNAGVKLI 182
Query: 141 EGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEEL 200
EG GK++ P+ V+V KL YSAKHIL+A G R IPG+ELAI SD AL L
Sbjct: 183 EGHGKMIDPHTVDVN----GKL-YSAKHILVAVGGRPFIPDIPGKELAIDSDAALDLPTK 237
Query: 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260
P + ++GGGYIA+EFA I+ G+ S V + R++ LRGFD+E+R V + RGI H
Sbjct: 238 PVKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIRDFVEEQMSVRGIEFH 297
Query: 261 PRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319
+ + + KS +G + T+ G ++FATGR PNT+ L L++VGV++ + GA++
Sbjct: 298 TEESPQAITKSADGSFSLKTNKGTVDGFSHIMFATGRRPNTQNLGLESVGVKLAKDGAIE 357
Query: 320 VDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIP 379
VDE S+T+V SIWAVGDVTNR+NLTPVALMEG KT+F P KPDYR VP AVF P
Sbjct: 358 VDEYSQTSVYSIWAVGDVTNRINLTPVALMEGGALVKTLFQDNPTKPDYRAVPSAVFSQP 417
Query: 380 PLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMC 439
P+ VGL+EEQA++Q GDI +FT++F P++ T+SG ++ MKLVV A+T +VLG MC
Sbjct: 418 PIGQVGLTEEQAVQQ-YGDIDIFTANFRPLKATLSGLPDRVFMKLVVCAKTNEVLGLHMC 476
Query: 440 GPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRV 487
G +APEI+QG AVALK TKA FD+TVGIHPS+AEEFVTMR+ TR++
Sbjct: 477 GEDAPEIVQGFAVALKARLTKADFDATVGIHPSAAEEFVTMRTPTRKI 524
|
Maintains high levels of reduced glutathione in the chloroplast. Glycine max (taxid: 3847) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|P48639|GSHR_BURCE Glutathione reductase OS=Burkholderia cepacia GN=gor PE=3 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/462 (48%), Positives = 296/462 (64%), Gaps = 19/462 (4%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICE-LPFHPISSEVIGGVGGTCVIRGCVPKK 80
+DFDLFVIGAGSGGVRAAR +A GAKV I E F GGTCVIRGCVPKK
Sbjct: 4 YDFDLFVIGAGSGGVRAARIAAGHGAKVAIAEEYRF-----------GGTCVIRGCVPKK 52
Query: 81 ILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLY 140
+L+Y + +G EDA +GW W L+ K EI RL G+Y+RL+ NA V+++
Sbjct: 53 LLMYASQYGQGFEDAAGFGWH-SAATSHSWTSLIAAKDAEIARLEGVYQRLIENANVEIF 111
Query: 141 EGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEEL 200
+G +I GPN V VT S SA+ ILIATG+R P+ G L ITSD+ L
Sbjct: 112 KGRAQIAGPNRVTVT-----GASVSARTILIATGARPVMPPVAGANLMITSDDVFDLPVG 166
Query: 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260
P R ++GGGYIA EFA I+ G+G V L R LRGFDDE+R + L+ GI+L
Sbjct: 167 PPRIAIIGGGYIACEFAGIFNGLGRHVVQLHRGSQVLRGFDDELREHLGDELKKSGIDLR 226
Query: 261 PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320
+ + + + V G+ + D V+ ATGR PNT L L+ V V +DQ GA+KV
Sbjct: 227 LGVDVVAVERQRGALSVQLTTGDAMEVDAVMAATGRLPNTWGLGLETVDVGLDQNGAIKV 286
Query: 321 DENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPP 380
DE SRT+ P I+AVGDVTNR+NLTPVA+ EG FA TVFGG+ ++ +VP AVF P
Sbjct: 287 DEYSRTSSPGIYAVGDVTNRLNLTPVAIHEGHAFADTVFGGKALPTEHENVPFAVFSQPQ 346
Query: 381 LSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCG 440
+ VGLSE QA ++ ++ ++ S+F PMR +SGR EK ++KLVV+ ++V+GA + G
Sbjct: 347 AASVGLSEAQARDR-YSNVEIYGSAFRPMRAALSGRDEKALVKLVVNGSNDRVVGAHIVG 405
Query: 441 PEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482
+A EI+QGIAVA+K ATKA FD+T+G+HP+ AEEFVT+R+
Sbjct: 406 ADAAEIIQGIAVAIKARATKADFDATLGVHPTLAEEFVTLRN 447
|
Burkholderia cepacia (taxid: 292) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 498 | ||||||
| 225433440 | 496 | PREDICTED: glutathione reductase, cytoso | 0.995 | 1.0 | 0.861 | 0.0 | |
| 400234892 | 496 | glutathione reductase [Fragaria x ananas | 0.995 | 1.0 | 0.861 | 0.0 | |
| 224057577 | 499 | glutathione reductase [Populus trichocar | 0.997 | 0.995 | 0.863 | 0.0 | |
| 291480274 | 496 | glutathione reductase [Hevea brasiliensi | 0.995 | 1.0 | 0.861 | 0.0 | |
| 255554156 | 496 | glutathione reductase, putative [Ricinus | 0.995 | 1.0 | 0.843 | 0.0 | |
| 356559573 | 501 | PREDICTED: glutathione reductase, cytoso | 1.0 | 0.994 | 0.852 | 0.0 | |
| 224072659 | 498 | predicted protein [Populus trichocarpa] | 0.997 | 0.997 | 0.847 | 0.0 | |
| 356498970 | 501 | PREDICTED: glutathione reductase, cytoso | 1.0 | 0.994 | 0.846 | 0.0 | |
| 86371808 | 499 | glutathione reductase [Vigna unguiculata | 0.997 | 0.995 | 0.848 | 0.0 | |
| 452114380 | 496 | gluthatione reductase [Vitis vinifera] | 0.995 | 1.0 | 0.841 | 0.0 |
| >gi|225433440|ref|XP_002285672.1| PREDICTED: glutathione reductase, cytosolic [Vitis vinifera] gi|297741929|emb|CBI33364.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/498 (86%), Positives = 472/498 (94%), Gaps = 2/498 (0%)
Query: 1 MARKMLNDGELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPIS 60
MARKML DGELS+PN+EE TH+DFDLFVIGAGSGGVRAARFSANFGAKV ICELPFHP+S
Sbjct: 1 MARKMLIDGELSKPNEEE-THYDFDLFVIGAGSGGVRAARFSANFGAKVAICELPFHPVS 59
Query: 61 SEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDE 120
SEVIGGVGGTCVIRGCVPKKILVYGASF GE+EDA++YGWE+++K+DF+WKKLL KKT+E
Sbjct: 60 SEVIGGVGGTCVIRGCVPKKILVYGASFRGEIEDAKNYGWELNDKVDFNWKKLLHKKTEE 119
Query: 121 ILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180
I+RLNGIYKRLL+NAGVKLYEGEGKIVGPNEVEVTQLDGTKL YSAKHILIATGSRAQR
Sbjct: 120 IVRLNGIYKRLLTNAGVKLYEGEGKIVGPNEVEVTQLDGTKLCYSAKHILIATGSRAQRP 179
Query: 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF 240
IPGQEL+ITSDEALSL+ELPKRAV+LGGGYIAVEFASIW GMG VDL FRKELPLRGF
Sbjct: 180 TIPGQELSITSDEALSLDELPKRAVILGGGYIAVEFASIWNGMGVAVDLFFRKELPLRGF 239
Query: 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300
DDEMRAVVARNLE RGINLHPRTT+ EL+K+E+G+KVITDHGEE+ ADVVLFATGRAPNT
Sbjct: 240 DDEMRAVVARNLEARGINLHPRTTLSELVKTEDGIKVITDHGEELTADVVLFATGRAPNT 299
Query: 301 KRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360
KRLNL+ VGVE+D+ GAVKVDE SRTN+PSIWA+GDVTNRMNLTPVALMEGT FAKTVFG
Sbjct: 300 KRLNLEVVGVELDKMGAVKVDEYSRTNIPSIWAIGDVTNRMNLTPVALMEGTYFAKTVFG 359
Query: 361 GQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT 420
GQP KPDY+D+PCAVFC+PPLSVVGLSEEQA +Q +GDILVFTS+FNPM+NTISGRQEKT
Sbjct: 360 GQPSKPDYKDIPCAVFCLPPLSVVGLSEEQATDQAEGDILVFTSTFNPMKNTISGRQEKT 419
Query: 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480
+MKL+VDAET+KVLGASMCGP+APEIMQGIAVALKCGATKAQFD TVGIHPS+AEEFVTM
Sbjct: 420 IMKLLVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDCTVGIHPSAAEEFVTM 479
Query: 481 RSVTRRVAAASSNPKTNL 498
RSVTRR+AA + PKTNL
Sbjct: 480 RSVTRRIAAG-NKPKTNL 496
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|400234892|gb|AFP74110.1| glutathione reductase [Fragaria x ananassa] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/498 (86%), Positives = 472/498 (94%), Gaps = 2/498 (0%)
Query: 1 MARKMLNDGELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPIS 60
MARKML DGELS+PN+EE H+DFDLFVIGAGSGGVRAARFSAN GAKV ICELPFHPIS
Sbjct: 1 MARKMLIDGELSKPNEEE-AHYDFDLFVIGAGSGGVRAARFSANMGAKVAICELPFHPIS 59
Query: 61 SEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDE 120
SEVIGGVGGTCVIRGCVPKKILVYGASFG E++DA++YGWEV++K+DF+WKKLLQKKTDE
Sbjct: 60 SEVIGGVGGTCVIRGCVPKKILVYGASFGSEIQDAKNYGWEVNDKVDFNWKKLLQKKTDE 119
Query: 121 ILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180
I+RLNGIYKRLLSNAGVKL+EGEGK+VGPNEVEVTQLDGTKLSYSAKHILIATG RAQR
Sbjct: 120 IVRLNGIYKRLLSNAGVKLFEGEGKLVGPNEVEVTQLDGTKLSYSAKHILIATGGRAQRP 179
Query: 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF 240
IPG+EL ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMG++VDL FR+ELPLRGF
Sbjct: 180 GIPGEELGITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGASVDLFFRRELPLRGF 239
Query: 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300
DDEMRAV ARNLE RGI+LHPRT + ELIK+E+G+KVITDHGEE++ADVVLFATGR PN+
Sbjct: 240 DDEMRAVAARNLEARGIDLHPRTNLTELIKTEDGIKVITDHGEELIADVVLFATGRVPNS 299
Query: 301 KRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360
KRLNL+AVGVE+D GAVKVDE SRTN+PSIWAVGDVTNR+NLTPVALMEGTCFAKTVFG
Sbjct: 300 KRLNLEAVGVELDPKGAVKVDEYSRTNIPSIWAVGDVTNRVNLTPVALMEGTCFAKTVFG 359
Query: 361 GQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT 420
G+P KPDYRD+PCAVFCIPPLSVVGLSEEQA+EQ GD+LVFTSSFNPM+NT+SGRQEK+
Sbjct: 360 GEPSKPDYRDIPCAVFCIPPLSVVGLSEEQAVEQANGDLLVFTSSFNPMKNTVSGRQEKS 419
Query: 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480
VMKLVVDAET+KVLGASMCGP++PEIMQGIA+ALKCGATKAQFDSTVGIHPS+AEEFVTM
Sbjct: 420 VMKLVVDAETDKVLGASMCGPDSPEIMQGIAIALKCGATKAQFDSTVGIHPSAAEEFVTM 479
Query: 481 RSVTRRVAAASSNPKTNL 498
RSVTRRV +AS PKT L
Sbjct: 480 RSVTRRV-SASGKPKTTL 496
|
Source: Fragaria x ananassa Species: Fragaria x ananassa Genus: Fragaria Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224057577|ref|XP_002299276.1| glutathione reductase [Populus trichocarpa] gi|222846534|gb|EEE84081.1| glutathione reductase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/498 (86%), Positives = 465/498 (93%), Gaps = 1/498 (0%)
Query: 1 MARKMLNDGELSQPNQ-EEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPI 59
MARKML DGE++Q NQ EE+ HFDFDLFVIGAGSGGVRAARFSAN+GAKVGICELPFHPI
Sbjct: 1 MARKMLIDGEVNQTNQVEEEAHFDFDLFVIGAGSGGVRAARFSANYGAKVGICELPFHPI 60
Query: 60 SSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTD 119
SSEVIGGVGGTCVIRGCVPKKILVYGA+FGGE+EDAR+YGWEV+EK+DF+WKKLLQKKTD
Sbjct: 61 SSEVIGGVGGTCVIRGCVPKKILVYGANFGGEIEDARNYGWEVNEKVDFNWKKLLQKKTD 120
Query: 120 EILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179
EI+RLNGIYKRLLSNAGVKLYEGEGKIVGPNEVE+TQLDGTKL YSAKHILIATGSRAQR
Sbjct: 121 EIIRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEMTQLDGTKLRYSAKHILIATGSRAQR 180
Query: 180 APIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG 239
IPGQELAITSDEALSLE+LPKRAVV GGGY+AVEFASIWRGMG+TVDL FRKELPLRG
Sbjct: 181 PAIPGQELAITSDEALSLEDLPKRAVVFGGGYVAVEFASIWRGMGATVDLFFRKELPLRG 240
Query: 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299
FDDEMRAVVARNLEGRGINLHPR+ + EL K+EEG+K+ TDH EE++ADVVLFATGRAPN
Sbjct: 241 FDDEMRAVVARNLEGRGINLHPRSNLIELTKTEEGIKIYTDHKEELLADVVLFATGRAPN 300
Query: 300 TKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359
TKRLNL+AVG+E+D GAVKVDE SRTN+P+IWAVGDVTNRMNLTPVALMEGTCFAKTVF
Sbjct: 301 TKRLNLEAVGIELDNAGAVKVDEYSRTNIPTIWAVGDVTNRMNLTPVALMEGTCFAKTVF 360
Query: 360 GGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEK 419
GQP KPDY +PCAVF IPPLSVVGLSEEQA+EQ GD+LVFTS+FNPM+NTISGRQEK
Sbjct: 361 AGQPTKPDYNHIPCAVFSIPPLSVVGLSEEQALEQANGDVLVFTSTFNPMKNTISGRQEK 420
Query: 420 TVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479
TVMKLVVDAET+KVLGASM GP+APEIMQGIAVALKCGATK QFDSTVGIHPS+AEEFVT
Sbjct: 421 TVMKLVVDAETDKVLGASMFGPDAPEIMQGIAVALKCGATKQQFDSTVGIHPSAAEEFVT 480
Query: 480 MRSVTRRVAAASSNPKTN 497
MRSVTRRV A TN
Sbjct: 481 MRSVTRRVTAGGKPKTTN 498
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|291480274|gb|ADE06225.1| glutathione reductase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/498 (86%), Positives = 472/498 (94%), Gaps = 2/498 (0%)
Query: 1 MARKMLNDGELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPIS 60
MARKML DGE++Q N++E +H+DFDLFVIGAGSGGVRA+RFSAN+GAKV ICELPFHPIS
Sbjct: 1 MARKMLIDGEVNQSNEQE-SHYDFDLFVIGAGSGGVRASRFSANYGAKVAICELPFHPIS 59
Query: 61 SEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDE 120
SEV+GGVGGTCV+RGCVPKKILVYGASFGG++EDAR+YGWE++EK++F+WKKLLQKKTDE
Sbjct: 60 SEVVGGVGGTCVLRGCVPKKILVYGASFGGDIEDARNYGWEINEKVEFNWKKLLQKKTDE 119
Query: 121 ILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180
I RLNGIYKRLLSNAGVKL EGEGK+VGPNEVEVTQLDGTKLSYSAKHILI+TG+RAQR
Sbjct: 120 ITRLNGIYKRLLSNAGVKLLEGEGKVVGPNEVEVTQLDGTKLSYSAKHILISTGNRAQRP 179
Query: 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF 240
IPGQELAITSDEALSLE++PKRAVVLGGGYIAVEFASIWRGMG+TVDL+FRKELPLRGF
Sbjct: 180 NIPGQELAITSDEALSLEDMPKRAVVLGGGYIAVEFASIWRGMGATVDLVFRKELPLRGF 239
Query: 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300
DDEMRAVVARNLEGRGINLHPRTT+ +LIK+E G+KV TDHGEE +ADVVLFATGRAP T
Sbjct: 240 DDEMRAVVARNLEGRGINLHPRTTLTQLIKTENGIKVSTDHGEEFLADVVLFATGRAPYT 299
Query: 301 KRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360
KRLNL+ GVE+D TGA+KVDE SRTN+PSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG
Sbjct: 300 KRLNLETAGVELDSTGAIKVDEYSRTNIPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 359
Query: 361 GQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT 420
GQPCKPDYRDVP AVF IPPLSVVGLSEEQAIEQ K DILVFTS+FNPM+NTISGRQEKT
Sbjct: 360 GQPCKPDYRDVPSAVFSIPPLSVVGLSEEQAIEQAKNDILVFTSTFNPMKNTISGRQEKT 419
Query: 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480
VMKLVVDAET+KVLGASMCGP+APEI+QGIAVALKCGATKAQ DSTVGIHPS+AEEFVTM
Sbjct: 420 VMKLVVDAETDKVLGASMCGPDAPEIIQGIAVALKCGATKAQLDSTVGIHPSTAEEFVTM 479
Query: 481 RSVTRRVAAASSNPKTNL 498
RS+TRR+ A S PKT+L
Sbjct: 480 RSLTRRITAG-SKPKTSL 496
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554156|ref|XP_002518118.1| glutathione reductase, putative [Ricinus communis] gi|223542714|gb|EEF44251.1| glutathione reductase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/498 (84%), Positives = 468/498 (93%), Gaps = 2/498 (0%)
Query: 1 MARKMLNDGELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPIS 60
MARKML DGEL+Q N++E FDFDLFVIGAGSGGVRA+RFSAN+GAKVGICELPF+PIS
Sbjct: 1 MARKMLIDGELNQSNEQE-AQFDFDLFVIGAGSGGVRASRFSANYGAKVGICELPFNPIS 59
Query: 61 SEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDE 120
S+ GGVGGTCV+RGCVPKKILVYGASFGG++EDAR++GW+++EK++F+WKKLLQKKTDE
Sbjct: 60 SDSDGGVGGTCVLRGCVPKKILVYGASFGGDIEDARNFGWDINEKVEFNWKKLLQKKTDE 119
Query: 121 ILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180
I RLNGIYKRLLSN+GVKL+EGEGKIVGPNEVE+TQLDGTKLSYSAKHILIATGSRAQR
Sbjct: 120 ITRLNGIYKRLLSNSGVKLFEGEGKIVGPNEVELTQLDGTKLSYSAKHILIATGSRAQRP 179
Query: 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF 240
IPG ELAITSDEALSLE++PKRAVVLGGGYIAVEFASIWRGMG+TVDL+FRKELPLRGF
Sbjct: 180 AIPGHELAITSDEALSLEDMPKRAVVLGGGYIAVEFASIWRGMGATVDLVFRKELPLRGF 239
Query: 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300
DDEMRAVVARNLEGRGINLHPRT + +L K+E G+KV+TDHGEE +ADVVLFATGRAP T
Sbjct: 240 DDEMRAVVARNLEGRGINLHPRTNLTQLTKTENGIKVLTDHGEEFMADVVLFATGRAPVT 299
Query: 301 KRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360
KRLNL+AVGVE+D GA+KVDE SRTN+PSIWA+GDVTNRMNLTPVALMEGTCFAKTVFG
Sbjct: 300 KRLNLEAVGVELDHAGAIKVDEYSRTNIPSIWAIGDVTNRMNLTPVALMEGTCFAKTVFG 359
Query: 361 GQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT 420
G+ CKPDY +VPCAVFCIPP+SVVGLSEEQAIEQ GDILVFTSSFNPM+NTIS RQEKT
Sbjct: 360 GESCKPDYTNVPCAVFCIPPMSVVGLSEEQAIEQANGDILVFTSSFNPMKNTISARQEKT 419
Query: 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480
VMKLVVDAET+KVLG SMCGP+APE++QG+AVALKCGATKAQFDSTVGIHPS+AEEFVTM
Sbjct: 420 VMKLVVDAETDKVLGVSMCGPDAPEVVQGMAVALKCGATKAQFDSTVGIHPSAAEEFVTM 479
Query: 481 RSVTRRVAAASSNPKTNL 498
RS+TRRV A + PKTNL
Sbjct: 480 RSLTRRVNAGNK-PKTNL 496
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559573|ref|XP_003548073.1| PREDICTED: glutathione reductase, cytosolic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/501 (85%), Positives = 465/501 (92%), Gaps = 3/501 (0%)
Query: 1 MARKMLNDGE--LSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHP 58
MARKML DGE L+Q EE ++FDFDLF+IGAGSGGVRAARFS+NFGAKVGICELPFHP
Sbjct: 1 MARKMLIDGEAELAQGGGEEVSNFDFDLFIIGAGSGGVRAARFSSNFGAKVGICELPFHP 60
Query: 59 ISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKT 118
ISSE IGGVGGTCVIRGCVPKKILVYGASFGG+LEDAR+YGWE+ EK+DF+WKKLLQKKT
Sbjct: 61 ISSETIGGVGGTCVIRGCVPKKILVYGASFGGDLEDARNYGWELSEKVDFNWKKLLQKKT 120
Query: 119 DEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178
DEI RLNG+YKR+LSN GVKL+EGEGKIVGPNEVEVTQLDGTKLSY+AKHILIATGSRAQ
Sbjct: 121 DEINRLNGLYKRMLSNWGVKLFEGEGKIVGPNEVEVTQLDGTKLSYTAKHILIATGSRAQ 180
Query: 179 RAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR 238
R IPGQEL ITSDEALSLE+LPK AVVLGGGYIAVEFASIWRGMGSTVDL+FRKELPLR
Sbjct: 181 RPNIPGQELGITSDEALSLEDLPKHAVVLGGGYIAVEFASIWRGMGSTVDLVFRKELPLR 240
Query: 239 GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298
GFDDEMRA VARNLEGRGINLHPRT + +LIK+E+G+KVITDHGEE++AD VLFATGRAP
Sbjct: 241 GFDDEMRAAVARNLEGRGINLHPRTNLTQLIKTEDGIKVITDHGEELIADAVLFATGRAP 300
Query: 299 NTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358
N+KRLNL+ VGVE+D TGA+KVDE SRT++PSIWAVGDVTNRMNLTPVALME + FAKTV
Sbjct: 301 NSKRLNLETVGVELDNTGAIKVDEYSRTSIPSIWAVGDVTNRMNLTPVALMEASYFAKTV 360
Query: 359 FGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQE 418
FGGQ KPDY ++P AVF IPPLSVVGLSEEQAIEQ GD+LVFTS+FNPM+NTISGRQE
Sbjct: 361 FGGQTIKPDYSNIPYAVFSIPPLSVVGLSEEQAIEQTNGDLLVFTSTFNPMKNTISGRQE 420
Query: 419 KTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFV 478
KTVMKLVVDAET+KVLGASMCGP+APEIMQGIAVALKCGATKAQFDSTVGIHPS+AEEFV
Sbjct: 421 KTVMKLVVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFV 480
Query: 479 TMRSVTRRVAAASS-NPKTNL 498
TMRSVTRRVA S PKTNL
Sbjct: 481 TMRSVTRRVAGTGSVKPKTNL 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224072659|ref|XP_002303826.1| predicted protein [Populus trichocarpa] gi|118488346|gb|ABK95991.1| unknown [Populus trichocarpa] gi|222841258|gb|EEE78805.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/499 (84%), Positives = 463/499 (92%), Gaps = 2/499 (0%)
Query: 1 MARKMLNDGELSQPNQ-EEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPI 59
M RKM DGE++Q +Q EE HFDFDLFVIGAGSGGVRAARFSAN+GAKVGICELPFHPI
Sbjct: 1 MPRKMPIDGEVNQASQVEEDAHFDFDLFVIGAGSGGVRAARFSANYGAKVGICELPFHPI 60
Query: 60 SSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTD 119
SSEV GGVGGTCV+RGCVPKKILVYGA+FGGE+EDAR+YGWE++EK+DF+WKKLLQKK+D
Sbjct: 61 SSEVNGGVGGTCVLRGCVPKKILVYGANFGGEIEDARNYGWEINEKVDFNWKKLLQKKSD 120
Query: 120 EILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179
EI+RLNGIYKRLLSNAGVKLYEGEGK+ GPNEVE+TQLDGTKL YSAKHILIATGS+AQR
Sbjct: 121 EIVRLNGIYKRLLSNAGVKLYEGEGKVAGPNEVELTQLDGTKLKYSAKHILIATGSKAQR 180
Query: 180 APIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG 239
IPGQEL ITSDEALSLE+LPKRAVVLGGGYIAVEFASIWRGMG+TVDL R+ELPLRG
Sbjct: 181 PNIPGQELGITSDEALSLEDLPKRAVVLGGGYIAVEFASIWRGMGATVDLFLRRELPLRG 240
Query: 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299
FDDEMRAVVARNLEGRGINLHPRT + EL K+E+G+KV TDHGEE++ADVVLFATGRAPN
Sbjct: 241 FDDEMRAVVARNLEGRGINLHPRTNLTELTKTEDGIKVRTDHGEELLADVVLFATGRAPN 300
Query: 300 TKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359
TKRLNL+A GVE+D+TGAVKVDE SRTN+PSIWA GDVTNRMNLTPVALMEG+CFAKTVF
Sbjct: 301 TKRLNLEAAGVELDKTGAVKVDEFSRTNIPSIWAAGDVTNRMNLTPVALMEGSCFAKTVF 360
Query: 360 GGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEK 419
GQP KPDY +P AVF IPPLSVVGLSEEQA++Q GD+LVFTS+FNPM+NTISGRQEK
Sbjct: 361 AGQPTKPDYNHIPYAVFSIPPLSVVGLSEEQALDQANGDVLVFTSTFNPMKNTISGRQEK 420
Query: 420 TVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479
TVMKLVVDAET+KVLGASMCGP+APEIMQGIAVALKCGATK QFDSTVGIHPS+AEEFVT
Sbjct: 421 TVMKLVVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKQQFDSTVGIHPSAAEEFVT 480
Query: 480 MRSVTRRVAAASSNPKTNL 498
MRSV RRV AS PKTNL
Sbjct: 481 MRSVARRV-TASGKPKTNL 498
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498970|ref|XP_003518318.1| PREDICTED: glutathione reductase, cytosolic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/501 (84%), Positives = 467/501 (93%), Gaps = 3/501 (0%)
Query: 1 MARKMLNDGE--LSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHP 58
MARKML DGE ++Q EE ++FDFDLF+IGAGSGGVRAARFS+NFGAKVGICELPFHP
Sbjct: 1 MARKMLIDGEAEIAQGGGEEVSNFDFDLFIIGAGSGGVRAARFSSNFGAKVGICELPFHP 60
Query: 59 ISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKT 118
ISSE IGGVGGTCVIRGCVPKKILVYGASFGG+L+DAR+YGWE+ EK+DF+WK+LLQKKT
Sbjct: 61 ISSETIGGVGGTCVIRGCVPKKILVYGASFGGDLQDARNYGWELSEKVDFNWKRLLQKKT 120
Query: 119 DEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178
DEI RLNG+YKR+LSN GVKL+EGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATG RAQ
Sbjct: 121 DEINRLNGLYKRMLSNWGVKLFEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGGRAQ 180
Query: 179 RAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR 238
R IPGQEL ITSDEALSLE+LPKRAVVLGGGYIAVEFASIWRGMGSTVDL+FRKELPLR
Sbjct: 181 RPNIPGQELGITSDEALSLEDLPKRAVVLGGGYIAVEFASIWRGMGSTVDLVFRKELPLR 240
Query: 239 GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298
GFDDEMRAVVARNLEGRGINLHPRT + +LIK+E+G+KVITDHGEE++ADVVLFATGRAP
Sbjct: 241 GFDDEMRAVVARNLEGRGINLHPRTNLTQLIKTEDGIKVITDHGEELIADVVLFATGRAP 300
Query: 299 NTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358
N+KRLNL+AVGVE+D TGA+KVDE S T++PSIWAVGDVTNRMNLTPVALME + FAKTV
Sbjct: 301 NSKRLNLEAVGVELDNTGAIKVDEYSCTSIPSIWAVGDVTNRMNLTPVALMEASYFAKTV 360
Query: 359 FGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQE 418
FGGQ KPDY ++P AVF IPPLSVVGLSEEQAIEQ GD+LVFTS FNPM+NTISGRQE
Sbjct: 361 FGGQKIKPDYNNIPYAVFSIPPLSVVGLSEEQAIEQTNGDLLVFTSIFNPMKNTISGRQE 420
Query: 419 KTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFV 478
KTVMKLVVDAET+KVLGASMCGP+APEI+QGIA+AL+CGATKAQFDSTVGIHPS+AEEFV
Sbjct: 421 KTVMKLVVDAETDKVLGASMCGPDAPEIIQGIAIALQCGATKAQFDSTVGIHPSAAEEFV 480
Query: 479 TMRSVTRRVAA-ASSNPKTNL 498
TMRSVTRRVA S+ PKTNL
Sbjct: 481 TMRSVTRRVAGTGSAKPKTNL 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|86371808|gb|ABB89042.1| glutathione reductase [Vigna unguiculata] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/500 (84%), Positives = 466/500 (93%), Gaps = 3/500 (0%)
Query: 1 MARKMLNDGEL-SQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPI 59
MARKML DGE S P E+ T+FDFDLF+IGAGSGGVRAARFS+N+GAKVGICELPF+PI
Sbjct: 1 MARKMLIDGEAESVPGVEQGTNFDFDLFIIGAGSGGVRAARFSSNYGAKVGICELPFNPI 60
Query: 60 SSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTD 119
SSE IGGVGGTCVIRGCVPKKILVYGAS+GGELEDAR+YGWE++EK+DF+WKKLLQKKTD
Sbjct: 61 SSETIGGVGGTCVIRGCVPKKILVYGASYGGELEDARNYGWELNEKVDFNWKKLLQKKTD 120
Query: 120 EILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179
EI RLNGIYKRLLSNAGVKL+EGEGKIVGPNEVEVTQLDGTKLSY+AKHILIATGSRAQR
Sbjct: 121 EINRLNGIYKRLLSNAGVKLFEGEGKIVGPNEVEVTQLDGTKLSYTAKHILIATGSRAQR 180
Query: 180 APIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG 239
IPGQEL ITSDEALSLE+LPKRAVVLGGGYIAVEFASIWRGMGS VDL+FRKEL LRG
Sbjct: 181 PNIPGQELGITSDEALSLEDLPKRAVVLGGGYIAVEFASIWRGMGSEVDLVFRKELLLRG 240
Query: 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299
FDDEMRAVVARNLEGRGINLHPRT + +LIK+E G+KVITDHGEE++ADVVLFATGRAPN
Sbjct: 241 FDDEMRAVVARNLEGRGINLHPRTNLTQLIKTENGIKVITDHGEELIADVVLFATGRAPN 300
Query: 300 TKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359
+KRLNL+AVGVEVD+ GA+KVDE SRT++PSIWAVGDVTNRMNLTPVALME +CFAKTVF
Sbjct: 301 SKRLNLEAVGVEVDKAGAIKVDEYSRTSIPSIWAVGDVTNRMNLTPVALMEASCFAKTVF 360
Query: 360 GGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEK 419
GQ KPDY ++ CAVF IPPLSVVGLSEEQAIEQ KGD+L+FTS+FNPM+NTISGRQEK
Sbjct: 361 NGQASKPDYSNIACAVFSIPPLSVVGLSEEQAIEQTKGDLLIFTSTFNPMKNTISGRQEK 420
Query: 420 T-VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFV 478
T VMKL+VDAET+KVLGASMCGP+APEI+QGIA+ALKCGATK QFDSTVGIHPS+AEEFV
Sbjct: 421 TEVMKLIVDAETDKVLGASMCGPDAPEIIQGIAIALKCGATKEQFDSTVGIHPSAAEEFV 480
Query: 479 TMRSVTRRVAAASSNPKTNL 498
TMR+VTRRV S PKTNL
Sbjct: 481 TMRTVTRRV-TGSGKPKTNL 499
|
Source: Vigna unguiculata Species: Vigna unguiculata Genus: Vigna Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|452114380|gb|AGG09347.1| gluthatione reductase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/498 (84%), Positives = 464/498 (93%), Gaps = 2/498 (0%)
Query: 1 MARKMLNDGELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPIS 60
MARKML DGELS+PN+EE TH+DFDLFVIGAGSGGVRAARFSANFGAKV ICELPFHP+S
Sbjct: 1 MARKMLIDGELSKPNEEE-THYDFDLFVIGAGSGGVRAARFSANFGAKVAICELPFHPVS 59
Query: 61 SEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDE 120
SEVIGGVGGTCVIRGCVPKKILVYGASF GE+EDA++YGWE+++K+DF+WKKLL KKT+E
Sbjct: 60 SEVIGGVGGTCVIRGCVPKKILVYGASFRGEIEDAKNYGWELNDKVDFNWKKLLHKKTEE 119
Query: 121 ILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180
I+RLNGIYKRLL+NAGVKLYEGEGKIVGPNEVEVTQLDGTKL YSAKHILIATGSRAQR
Sbjct: 120 IVRLNGIYKRLLTNAGVKLYEGEGKIVGPNEVEVTQLDGTKLCYSAKHILIATGSRAQRP 179
Query: 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF 240
IPGQEL+ITSDEALSL+ELPKRAV+LGGGYIAVEFASIW GMG VDL FRKELPLRGF
Sbjct: 180 TIPGQELSITSDEALSLDELPKRAVILGGGYIAVEFASIWNGMGVAVDLFFRKELPLRGF 239
Query: 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300
DDEMRAVVARNLE RGINLHPRTT+ EL+K+E+G+KVITDHGEE+ ADVVLFATGRAPNT
Sbjct: 240 DDEMRAVVARNLEARGINLHPRTTLSELVKTEDGIKVITDHGEELTADVVLFATGRAPNT 299
Query: 301 KRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360
KRLNL+ VGVE+D+ GAVKVDE SRTN+PSIWA+GDVTNRMN TPV LMEGT FAK VFG
Sbjct: 300 KRLNLEVVGVELDKMGAVKVDEYSRTNIPSIWAIGDVTNRMNPTPVGLMEGTYFAKPVFG 359
Query: 361 GQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT 420
GQP +PDY+++P AV + PLSVVGLSEEQA +Q +GDILVFTS+FNPM+NTISGRQEKT
Sbjct: 360 GQPSEPDYKNIPWAVIGLTPLSVVGLSEEQATDQAEGDILVFTSTFNPMKNTISGRQEKT 419
Query: 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480
+MKL+VDAET+KVLGASMCGP+APEIMQGIAVALKCGATKAQFD TVGIHPS+AEE VTM
Sbjct: 420 IMKLLVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDCTVGIHPSAAEELVTM 479
Query: 481 RSVTRRVAAASSNPKTNL 498
RSVTRR+AA + PKTNL
Sbjct: 480 RSVTRRIAAG-NKPKTNL 496
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 498 | ||||||
| TAIR|locus:2093691 | 499 | GR1 "glutathione-disulfide red | 0.997 | 0.995 | 0.81 | 9.8e-222 | |
| TAIR|locus:2102410 | 565 | GR "AT3G54660" [Arabidopsis th | 0.953 | 0.840 | 0.531 | 7.9e-133 | |
| UNIPROTKB|Q48JF8 | 452 | gor "Glutathione-disulfide red | 0.899 | 0.991 | 0.494 | 1.2e-111 | |
| TIGR_CMR|SPO_1328 | 452 | SPO_1328 "glutathione-disulfid | 0.897 | 0.988 | 0.460 | 1.4e-103 | |
| UNIPROTKB|B2R5P6 | 497 | TXNRD1 "Thioredoxin reductase | 0.933 | 0.935 | 0.385 | 3.7e-80 | |
| UNIPROTKB|B7Z2S5 | 547 | TXNRD1 "cDNA FLJ56075, highly | 0.933 | 0.850 | 0.385 | 3.7e-80 | |
| UNIPROTKB|B7Z904 | 647 | TXNRD1 "Thioredoxin reductase | 0.933 | 0.718 | 0.385 | 3.7e-80 | |
| UNIPROTKB|E2QRB9 | 541 | TXNRD1 "Thioredoxin reductase | 0.933 | 0.859 | 0.385 | 3.7e-80 | |
| UNIPROTKB|E7EW10 | 612 | TXNRD1 "Thioredoxin reductase | 0.933 | 0.759 | 0.385 | 3.7e-80 | |
| UNIPROTKB|E9PNQ6 | 568 | TXNRD1 "Thioredoxin reductase | 0.933 | 0.818 | 0.385 | 3.7e-80 |
| TAIR|locus:2093691 GR1 "glutathione-disulfide reductase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2141 (758.7 bits), Expect = 9.8e-222, P = 9.8e-222
Identities = 405/500 (81%), Positives = 457/500 (91%)
Query: 1 MARKMLNDGELSQPNQEEQ--THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHP 58
MARKML DGE+ + +E TH+DFDLFVIGAGSGGVRAARFSAN GAKVGICELPFHP
Sbjct: 1 MARKMLVDGEIDKVAADEANATHYDFDLFVIGAGSGGVRAARFSANHGAKVGICELPFHP 60
Query: 59 ISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKT 118
ISSE IGGVGGTCVIRGCVPKKILVYGA++GGELEDA++YGWE++EK+DF WKKLLQKKT
Sbjct: 61 ISSEEIGGVGGTCVIRGCVPKKILVYGATYGGELEDAKNYGWEINEKVDFTWKKLLQKKT 120
Query: 119 DEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178
DEILRLN IYKRLL+NA VKLYEGEG++VGPNEVEV Q+DGTK+SY+AKHILIATGSRAQ
Sbjct: 121 DEILRLNNIYKRLLANAAVKLYEGEGRVVGPNEVEVRQIDGTKISYTAKHILIATGSRAQ 180
Query: 179 RAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR 238
+ IPG ELAITSDEALSLEE PKRA+VLGGGYIAVEFASIWRGMG+TVDL FRKELPLR
Sbjct: 181 KPNIPGHELAITSDEALSLEEFPKRAIVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR 240
Query: 239 GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298
GFDDEMRA+VARNLEGRG+NLHP+T++ +L K+++G+KVI+ HGEE VADVVLFATGR+P
Sbjct: 241 GFDDEMRALVARNLEGRGVNLHPQTSLTQLTKTDQGIKVISSHGEEFVADVVLFATGRSP 300
Query: 299 NTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358
NTKRLNL+AVGVE+DQ GAVKVDE SRTN+PSIWAVGD TNR+NLTPVALME TCFA T
Sbjct: 301 NTKRLNLEAVGVELDQAGAVKVDEYSRTNIPSIWAVGDATNRINLTPVALMEATCFANTA 360
Query: 359 FGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQE 418
FGG+P K +Y +V CAVFCIPPL+VVGLSEE+A+EQ GDILVFTS FNPM+NTISGRQE
Sbjct: 361 FGGKPTKAEYSNVACAVFCIPPLAVVGLSEEEAVEQATGDILVFTSGFNPMKNTISGRQE 420
Query: 419 KTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFV 478
KT+MKL+VD +++KV+GASMCGP+A EIMQGIA+ALKCGATKAQFDSTVGIHPSSAEEFV
Sbjct: 421 KTLMKLIVDEKSDKVIGASMCGPDAAEIMQGIAIALKCGATKAQFDSTVGIHPSSAEEFV 480
Query: 479 TMRSVTRRVAAASSNPKTNL 498
TMRSVTRR+A PKTNL
Sbjct: 481 TMRSVTRRIAH-KPKPKTNL 499
|
|
| TAIR|locus:2102410 GR "AT3G54660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1302 (463.4 bits), Expect = 7.9e-133, P = 7.9e-133
Identities = 256/482 (53%), Positives = 336/482 (69%)
Query: 17 EEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGC 76
E H+DFDLF IGAGSGGVRA+RF+ +FGA +CELPF ISS+ GGVGGTCV+RGC
Sbjct: 81 ESDRHYDFDLFTIGAGSGGVRASRFATSFGASAAVCELPFSTISSDTAGGVGGTCVLRGC 140
Query: 77 VPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAG 136
VPKK+LVY + + E ED+ +GW+ + DW L+ K E+ RL GIYK +LS A
Sbjct: 141 VPKKLLVYASKYSHEFEDSHGFGWKYETEPSHDWTTLIANKNAELQRLTGIYKNILSKAN 200
Query: 137 VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALS 196
VKL EG GK++ P+ V+V DG K+ Y+ ++ILIA G R IPG+E AI SD AL
Sbjct: 201 VKLIEGRGKVIDPHTVDV---DG-KI-YTTRNILIAVGGRPFIPDIPGKEFAIDSDAALD 255
Query: 197 LEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256
L PK+ ++GGGYIA+EFA I+ G+ V + R++ LRGFD+++R V + RG
Sbjct: 256 LPSKPKKIAIVGGGYIALEFAGIFNGLNCEVHVFIRQKKVLRGFDEDVRDFVGEQMSLRG 315
Query: 257 INLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQT 315
I H + + +IK+ +G + T G V+FATGR PNTK L L+ VGV++ +
Sbjct: 316 IEFHTEESPEAIIKAGDGSFSLKTSKGTVEGFSHVMFATGRKPNTKNLGLENVGVKMAKN 375
Query: 316 GAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAV 375
GA++VDE S+T+VPSIWAVGDVT+R+NLTPVALMEG AKT+F +P KPDYR VPCAV
Sbjct: 376 GAIEVDEYSQTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQNEPTKPDYRAVPCAV 435
Query: 376 FCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLG 435
F PP+ VGL+EEQAIEQ GD+ V+TS+F P++ T+SG ++ MKL+V A T KVLG
Sbjct: 436 FSQPPIGTVGLTEEQAIEQ-YGDVDVYTSNFRPLKATLSGLPDRVFMKLIVCANTNKVLG 494
Query: 436 ASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSNPK 495
MCG ++PEI+QG VA+K G TKA FD+TVG+HP++AEEFVTMR+ TR+ SS K
Sbjct: 495 VHMCGEDSPEIIQGFGVAVKAGLTKADFDATVGVHPTAAEEFVTMRAPTRKFRKDSSEGK 554
Query: 496 TN 497
+
Sbjct: 555 AS 556
|
|
| UNIPROTKB|Q48JF8 gor "Glutathione-disulfide reductase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
Identities = 231/467 (49%), Positives = 316/467 (67%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
FDFDLFVIGAGSGGVRAARF+A FGAKV + E + +GGTCV GCVPKK+
Sbjct: 3 FDFDLFVIGAGSGGVRAARFAAGFGAKVAVAESRY----------LGGTCVNVGCVPKKL 52
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
LVYGA F + + A+ +GW + E FDW L+ K EI RLNGIY++LL ++GV L E
Sbjct: 53 LVYGAHFSEDFDHAKGFGWSLGEA-SFDWSTLIANKDREINRLNGIYRKLLVDSGVTLLE 111
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELP 201
G ++VGP VE+ +G SYSA+ ILIATG Q +PG+E AITS+EA L+ LP
Sbjct: 112 GHARLVGPQRVEI---NGQ--SYSAERILIATGGWPQVPDVPGREHAITSNEAFYLKTLP 166
Query: 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261
KR VV+GGGYIAVEFASI+ G+G+ L++R+EL LRGFD +R + L R + +
Sbjct: 167 KRVVVVGGGYIAVEFASIFNGLGADTTLVYRRELFLRGFDGGVRTHLHEELLKRHMTIRF 226
Query: 262 RTTIKELIKSEEGVKVIT-DHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320
+ I+ + K +G +++ G + D V +ATGR P L L +V +++D+ G +KV
Sbjct: 227 NSDIERIDKQADGSLLLSMKGGGTLETDCVFYATGRRPMLDNLGLDSVDIKLDEHGYIKV 286
Query: 321 DENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKP-DYRDVPCAVFCIP 379
DE+ +++ PSI A+GDV + LTPVAL EG A+ +F + +P DY +P AVF +P
Sbjct: 287 DEHYQSSEPSILAIGDVIGGVQLTPVALAEGMAVARRLFKPEQYRPVDYNHIPTAVFSLP 346
Query: 380 PLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMC 439
+ VGL+EE AI+ G D+ VF S F PM+ T++ QE+T+MKLVVDA+T++VLG M
Sbjct: 347 NIGTVGLTEEDAIKAGH-DVQVFESRFRPMKLTLTDDQERTLMKLVVDAKTDRVLGCHMV 405
Query: 440 GPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRR 486
GP+A EI+Q +A+A+K GATK FD T+G+HP++AEEFVTMR+ +R
Sbjct: 406 GPDAGEIVQSLAIAIKAGATKQVFDDTIGVHPTAAEEFVTMRTPAKR 452
|
|
| TIGR_CMR|SPO_1328 SPO_1328 "glutathione-disulfide reductase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 214/465 (46%), Positives = 297/465 (63%)
Query: 22 FDFDLFVIGAGSGGVRAARFSAN-FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKK 80
FD+DLFVIG GSGGVRAAR +A GAKV + E + GGTCVIRGCVPKK
Sbjct: 3 FDYDLFVIGGGSGGVRAARVAAGETGAKVALAEEDRY----------GGTCVIRGCVPKK 52
Query: 81 ILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLY 140
++V+ + + G +EDA++YGW + FDW K E+ RL G+Y+ +L N GV+ +
Sbjct: 53 LMVFASEYSGMVEDAQAYGWNIQPGA-FDWDVFRSKLYTELDRLEGVYRNILKNNGVETF 111
Query: 141 EGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEEL 200
+ ++V + VE++ DGT+ S AKHILIATG R + I G ELAITS+E L++L
Sbjct: 112 DMRARLVDAHTVELS--DGTRKS--AKHILIATGGRPVKPEIKGAELAITSNEIFHLDKL 167
Query: 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260
P+R +++GGGYIA EF I GMG V +R LRGFDDE R +V+ + GI LH
Sbjct: 168 PERMLIVGGGYIACEFVGIMNGMGVEVTQYYRGAQILRGFDDEARGLVSEEMCQNGIKLH 227
Query: 261 PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320
T + E+ + + ++V +G+E + D V+FATGR PN L L+ +GVE+ + G + V
Sbjct: 228 LGTNVLEMEREGDRIRVKATNGDEELFDQVMFATGRVPNADHLGLEGLGVELGRKGQIVV 287
Query: 321 DENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPP 380
D+ S+T VPSI+A+GDVT+R+NLTPVA+ EG F TVF G+P D+ +P A+F P
Sbjct: 288 DDYSQTAVPSIYAIGDVTDRVNLTPVAIREGMAFVDTVFRGKPTPVDHALIPTAIFTQPE 347
Query: 381 LSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCG 440
+ VGLSEE+A Q +I + +SF PM+ +GR ++ +MKL+V T KVLG +
Sbjct: 348 MGTVGLSEEEAAAQEPVEI--YATSFKPMQTAFAGRSQRVLMKLIVSKATRKVLGCHIVA 405
Query: 441 PEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTR 485
P A E++Q + +A+K GATK FD TV +HP AEE VT+R R
Sbjct: 406 PGAGEMIQLVGIAVKMGATKEDFDRTVAVHPVMAEELVTLRQPVR 450
|
|
| UNIPROTKB|B2R5P6 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 187/485 (38%), Positives = 286/485 (58%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+D+DL +IG GSGG+ AA+ +A +G KV + + P G+GGTCV GC+PKK+
Sbjct: 11 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDF-VTPTPLGTRWGLGGTCVNVGCIPKKL 69
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ A G L+D+R+YGW+V E + DW ++++ + I LN Y+ L V +YE
Sbjct: 70 MHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV-VYE 128
Query: 142 GE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEE 199
G+ +GP+ ++ T G + YSA+ LIATG R + IPG +E I+SD+ SL
Sbjct: 129 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPY 188
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN- 258
P + +V+G Y+A+E A G+G V ++ R L LRGFD +M + ++E GI
Sbjct: 189 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMEEHGIKF 247
Query: 259 LHPRTTIK-ELIKS-EEG-VKVITD--HGEEIVA---DVVLFATGRAPNTKRLNLKAVGV 310
+ IK E I++ G ++V+ + EEI+ + V+ A GR T+++ L+ VGV
Sbjct: 248 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGV 307
Query: 311 EVDQ-TGAVKVDENSRTNVPSIWAVGDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDY 368
++++ TG + V + +TNVP I+A+GD+ +++ LTPVA+ G A+ ++ G K DY
Sbjct: 308 KINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDY 367
Query: 369 RDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQE-KTVMKLVV 426
+VP VF GLSEE+A+E+ G+ +I V+ S F P+ TI R K K++
Sbjct: 368 ENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIIC 427
Query: 427 DA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTR 485
+ + E+V+G + GP A E+ QG A ALKCG TK Q DST+GIHP AE F T+ SVT+
Sbjct: 428 NTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL-SVTK 486
Query: 486 RVAAA 490
R A+
Sbjct: 487 RSGAS 491
|
|
| UNIPROTKB|B7Z2S5 TXNRD1 "cDNA FLJ56075, highly similar to Thioredoxin reductase 1, cytoplasmic (EC 1.8.1.9)" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 187/485 (38%), Positives = 286/485 (58%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+D+DL +IG GSGG+ AA+ +A +G KV + + P G+GGTCV GC+PKK+
Sbjct: 61 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDF-VTPTPLGTRWGLGGTCVNVGCIPKKL 119
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ A G L+D+R+YGW+V E + DW ++++ + I LN Y+ L V +YE
Sbjct: 120 MHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV-VYE 178
Query: 142 GE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEE 199
G+ +GP+ ++ T G + YSA+ LIATG R + IPG +E I+SD+ SL
Sbjct: 179 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPY 238
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN- 258
P + +V+G Y+A+E A G+G V ++ R L LRGFD +M + ++E GI
Sbjct: 239 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMEEHGIKF 297
Query: 259 LHPRTTIK-ELIKS-EEG-VKVITD--HGEEIVA---DVVLFATGRAPNTKRLNLKAVGV 310
+ IK E I++ G ++V+ + EEI+ + V+ A GR T+++ L+ VGV
Sbjct: 298 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGV 357
Query: 311 EVDQ-TGAVKVDENSRTNVPSIWAVGDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDY 368
++++ TG + V + +TNVP I+A+GD+ +++ LTPVA+ G A+ ++ G K DY
Sbjct: 358 KINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDY 417
Query: 369 RDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQE-KTVMKLVV 426
+VP VF GLSEE+A+E+ G+ +I V+ S F P+ TI R K K++
Sbjct: 418 ENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIIC 477
Query: 427 DA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTR 485
+ + E+V+G + GP A E+ QG A ALKCG TK Q DST+GIHP AE F T+ SVT+
Sbjct: 478 NTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL-SVTK 536
Query: 486 RVAAA 490
R A+
Sbjct: 537 RSGAS 541
|
|
| UNIPROTKB|B7Z904 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 187/485 (38%), Positives = 286/485 (58%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+D+DL +IG GSGG+ AA+ +A +G KV + + P G+GGTCV GC+PKK+
Sbjct: 161 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDF-VTPTPLGTRWGLGGTCVNVGCIPKKL 219
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ A G L+D+R+YGW+V E + DW ++++ + I LN Y+ L V +YE
Sbjct: 220 MHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV-VYE 278
Query: 142 GE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEE 199
G+ +GP+ ++ T G + YSA+ LIATG R + IPG +E I+SD+ SL
Sbjct: 279 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPY 338
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN- 258
P + +V+G Y+A+E A G+G V ++ R L LRGFD +M + ++E GI
Sbjct: 339 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMEEHGIKF 397
Query: 259 LHPRTTIK-ELIKS-EEG-VKVITD--HGEEIVA---DVVLFATGRAPNTKRLNLKAVGV 310
+ IK E I++ G ++V+ + EEI+ + V+ A GR T+++ L+ VGV
Sbjct: 398 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGV 457
Query: 311 EVDQ-TGAVKVDENSRTNVPSIWAVGDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDY 368
++++ TG + V + +TNVP I+A+GD+ +++ LTPVA+ G A+ ++ G K DY
Sbjct: 458 KINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDY 517
Query: 369 RDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQE-KTVMKLVV 426
+VP VF GLSEE+A+E+ G+ +I V+ S F P+ TI R K K++
Sbjct: 518 ENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIIC 577
Query: 427 DA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTR 485
+ + E+V+G + GP A E+ QG A ALKCG TK Q DST+GIHP AE F T+ SVT+
Sbjct: 578 NTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL-SVTK 636
Query: 486 RVAAA 490
R A+
Sbjct: 637 RSGAS 641
|
|
| UNIPROTKB|E2QRB9 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 187/485 (38%), Positives = 286/485 (58%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+D+DL +IG GSGG+ AA+ +A +G KV + + P G+GGTCV GC+PKK+
Sbjct: 55 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDF-VTPTPLGTRWGLGGTCVNVGCIPKKL 113
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ A G L+D+R+YGW+V E + DW ++++ + I LN Y+ L V +YE
Sbjct: 114 MHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV-VYE 172
Query: 142 GE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEE 199
G+ +GP+ ++ T G + YSA+ LIATG R + IPG +E I+SD+ SL
Sbjct: 173 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPY 232
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN- 258
P + +V+G Y+A+E A G+G V ++ R L LRGFD +M + ++E GI
Sbjct: 233 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMEEHGIKF 291
Query: 259 LHPRTTIK-ELIKS-EEG-VKVITD--HGEEIVA---DVVLFATGRAPNTKRLNLKAVGV 310
+ IK E I++ G ++V+ + EEI+ + V+ A GR T+++ L+ VGV
Sbjct: 292 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGV 351
Query: 311 EVDQ-TGAVKVDENSRTNVPSIWAVGDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDY 368
++++ TG + V + +TNVP I+A+GD+ +++ LTPVA+ G A+ ++ G K DY
Sbjct: 352 KINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDY 411
Query: 369 RDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQE-KTVMKLVV 426
+VP VF GLSEE+A+E+ G+ +I V+ S F P+ TI R K K++
Sbjct: 412 ENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIIC 471
Query: 427 DA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTR 485
+ + E+V+G + GP A E+ QG A ALKCG TK Q DST+GIHP AE F T+ SVT+
Sbjct: 472 NTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL-SVTK 530
Query: 486 RVAAA 490
R A+
Sbjct: 531 RSGAS 535
|
|
| UNIPROTKB|E7EW10 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 187/485 (38%), Positives = 286/485 (58%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+D+DL +IG GSGG+ AA+ +A +G KV + + P G+GGTCV GC+PKK+
Sbjct: 126 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDF-VTPTPLGTRWGLGGTCVNVGCIPKKL 184
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ A G L+D+R+YGW+V E + DW ++++ + I LN Y+ L V +YE
Sbjct: 185 MHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV-VYE 243
Query: 142 GE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEE 199
G+ +GP+ ++ T G + YSA+ LIATG R + IPG +E I+SD+ SL
Sbjct: 244 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPY 303
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN- 258
P + +V+G Y+A+E A G+G V ++ R L LRGFD +M + ++E GI
Sbjct: 304 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMEEHGIKF 362
Query: 259 LHPRTTIK-ELIKS-EEG-VKVITD--HGEEIVA---DVVLFATGRAPNTKRLNLKAVGV 310
+ IK E I++ G ++V+ + EEI+ + V+ A GR T+++ L+ VGV
Sbjct: 363 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGV 422
Query: 311 EVDQ-TGAVKVDENSRTNVPSIWAVGDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDY 368
++++ TG + V + +TNVP I+A+GD+ +++ LTPVA+ G A+ ++ G K DY
Sbjct: 423 KINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDY 482
Query: 369 RDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQE-KTVMKLVV 426
+VP VF GLSEE+A+E+ G+ +I V+ S F P+ TI R K K++
Sbjct: 483 ENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIIC 542
Query: 427 DA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTR 485
+ + E+V+G + GP A E+ QG A ALKCG TK Q DST+GIHP AE F T+ SVT+
Sbjct: 543 NTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL-SVTK 601
Query: 486 RVAAA 490
R A+
Sbjct: 602 RSGAS 606
|
|
| UNIPROTKB|E9PNQ6 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 187/485 (38%), Positives = 286/485 (58%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+D+DL +IG GSGG+ AA+ +A +G KV + + P G+GGTCV GC+PKK+
Sbjct: 80 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDF-VTPTPLGTRWGLGGTCVNVGCIPKKL 138
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ A G L+D+R+YGW+V E + DW ++++ + I LN Y+ L V +YE
Sbjct: 139 MHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV-VYE 197
Query: 142 GE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEE 199
G+ +GP+ ++ T G + YSA+ LIATG R + IPG +E I+SD+ SL
Sbjct: 198 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPY 257
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN- 258
P + +V+G Y+A+E A G+G V ++ R L LRGFD +M + ++E GI
Sbjct: 258 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMEEHGIKF 316
Query: 259 LHPRTTIK-ELIKS-EEG-VKVITD--HGEEIVA---DVVLFATGRAPNTKRLNLKAVGV 310
+ IK E I++ G ++V+ + EEI+ + V+ A GR T+++ L+ VGV
Sbjct: 317 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGV 376
Query: 311 EVDQ-TGAVKVDENSRTNVPSIWAVGDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDY 368
++++ TG + V + +TNVP I+A+GD+ +++ LTPVA+ G A+ ++ G K DY
Sbjct: 377 KINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDY 436
Query: 369 RDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQE-KTVMKLVV 426
+VP VF GLSEE+A+E+ G+ +I V+ S F P+ TI R K K++
Sbjct: 437 ENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIIC 496
Query: 427 DA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTR 485
+ + E+V+G + GP A E+ QG A ALKCG TK Q DST+GIHP AE F T+ SVT+
Sbjct: 497 NTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL-SVTK 555
Query: 486 RVAAA 490
R A+
Sbjct: 556 RSGAS 560
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P80461 | GSHRP_TOBAC | 1, ., 8, ., 1, ., 7 | 0.5504 | 0.9417 | 0.8420 | N/A | no |
| Q43621 | GSHRC_PEA | 1, ., 8, ., 1, ., 7 | 0.8356 | 0.9979 | 0.9979 | N/A | no |
| Q8T137 | GSHR_DICDI | 1, ., 8, ., 1, ., 7 | 0.3821 | 0.8915 | 0.9548 | yes | no |
| Q6HA23 | GSHR_KLULA | 1, ., 8, ., 1, ., 7 | 0.3792 | 0.8955 | 0.9214 | yes | no |
| P00390 | GSHR_HUMAN | 1, ., 8, ., 1, ., 7 | 0.3870 | 0.8795 | 0.8390 | yes | no |
| P48641 | GSHRC_ARATH | 1, ., 8, ., 1, ., 7 | 0.81 | 0.9979 | 0.9959 | yes | no |
| P48642 | GSHRC_ORYSJ | 1, ., 8, ., 1, ., 7 | 0.7469 | 0.9959 | 1.0 | yes | no |
| P27456 | GSHRP_PEA | 1, ., 8, ., 1, ., 7 | 0.5492 | 0.9437 | 0.8514 | N/A | no |
| Q6C5H4 | GSHR_YARLI | 1, ., 8, ., 1, ., 7 | 0.3823 | 0.8955 | 0.9489 | yes | no |
| Q60151 | GSHR_STRTR | 1, ., 8, ., 1, ., 7 | 0.4071 | 0.8192 | 0.9066 | yes | no |
| Q43154 | GSHRP_SPIOL | 1, ., 8, ., 1, ., 7 | 0.8488 | 0.9678 | 0.9856 | N/A | no |
| P43783 | GSHR_HAEIN | 1, ., 8, ., 1, ., 7 | 0.4134 | 0.8614 | 0.9407 | yes | no |
| Q6FRV2 | GSHR_CANGA | 1, ., 8, ., 1, ., 7 | 0.3864 | 0.8975 | 0.9390 | yes | no |
| P78965 | GSHR_SCHPO | 1, ., 8, ., 1, ., 7 | 0.3827 | 0.8995 | 0.9655 | yes | no |
| P48638 | GSHR_NOSS1 | 1, ., 8, ., 1, ., 7 | 0.4376 | 0.8915 | 0.9673 | yes | no |
| Q74ZK4 | GSHR_ASHGO | 1, ., 8, ., 1, ., 7 | 0.3928 | 0.9056 | 0.9395 | yes | no |
| Q5NVA2 | TRXR1_PONAB | 1, ., 8, ., 1, ., 9 | 0.3760 | 0.9357 | 0.9338 | yes | no |
| O04955 | GSHRC_BRARP | 1, ., 8, ., 1, ., 7 | 0.8051 | 0.9979 | 0.9900 | N/A | no |
| P47791 | GSHR_MOUSE | 1, ., 8, ., 1, ., 7 | 0.3902 | 0.9216 | 0.918 | yes | no |
| P23189 | GSHR_PSEAE | 1, ., 8, ., 1, ., 7 | 0.5064 | 0.8975 | 0.9911 | yes | no |
| P41921 | GSHR_YEAST | 1, ., 8, ., 1, ., 7 | 0.3736 | 0.8975 | 0.9254 | yes | no |
| A2TIL1 | GSHR_CALJA | 1, ., 8, ., 1, ., 7 | 0.3912 | 0.8795 | 0.8390 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.8.1.7 | 0.994 |
| 3rd Layer | 1.8.1 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 498 | |||
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 0.0 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 0.0 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 0.0 | |
| PLN02546 | 558 | PLN02546, PLN02546, glutathione reductase | 0.0 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 1e-150 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 1e-136 | |
| TIGR01438 | 484 | TIGR01438, TGR, thioredoxin and glutathione reduct | 1e-119 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 1e-117 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 1e-108 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 1e-106 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 4e-99 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 3e-97 | |
| PRK06370 | 463 | PRK06370, PRK06370, mercuric reductase; Validated | 9e-96 | |
| PTZ00052 | 499 | PTZ00052, PTZ00052, thioredoxin reductase; Provisi | 4e-94 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 9e-92 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 2e-77 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 4e-73 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 3e-72 | |
| PRK06327 | 475 | PRK06327, PRK06327, dihydrolipoamide dehydrogenase | 3e-70 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 2e-68 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 5e-66 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 4e-65 | |
| PRK06467 | 471 | PRK06467, PRK06467, dihydrolipoamide dehydrogenase | 3e-60 | |
| PRK06912 | 458 | PRK06912, acoL, dihydrolipoamide dehydrogenase; Va | 1e-57 | |
| PRK13748 | 561 | PRK13748, PRK13748, putative mercuric reductase; P | 2e-55 | |
| PRK14727 | 479 | PRK14727, PRK14727, putative mercuric reductase; P | 2e-55 | |
| PRK07818 | 466 | PRK07818, PRK07818, dihydrolipoamide dehydrogenase | 1e-53 | |
| PRK06115 | 466 | PRK06115, PRK06115, dihydrolipoamide dehydrogenase | 1e-53 | |
| PRK08010 | 441 | PRK08010, PRK08010, pyridine nucleotide-disulfide | 6e-52 | |
| PRK07845 | 466 | PRK07845, PRK07845, flavoprotein disulfide reducta | 2e-50 | |
| PRK14694 | 468 | PRK14694, PRK14694, putative mercuric reductase; P | 2e-48 | |
| pfam02852 | 110 | pfam02852, Pyr_redox_dim, Pyridine nucleotide-disu | 3e-39 | |
| PTZ00153 | 659 | PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi | 4e-32 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 1e-27 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 6e-26 | |
| TIGR01292 | 299 | TIGR01292, TRX_reduct, thioredoxin-disulfide reduc | 2e-19 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 1e-18 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 2e-18 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 4e-18 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 4e-16 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 7e-16 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 4e-15 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 3e-14 | |
| PRK13512 | 438 | PRK13512, PRK13512, coenzyme A disulfide reductase | 5e-13 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 6e-13 | |
| PRK12770 | 352 | PRK12770, PRK12770, putative glutamate synthase su | 3e-12 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 7e-12 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 2e-11 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 7e-09 | |
| TIGR04018 | 316 | TIGR04018, Bthiol_YpdA, putative bacillithiol syst | 1e-08 | |
| TIGR03140 | 515 | TIGR03140, AhpF, alkyl hydroperoxide reductase sub | 6e-08 | |
| COG3634 | 520 | COG3634, AhpF, Alkyl hydroperoxide reductase, larg | 3e-07 | |
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 1e-06 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 4e-06 | |
| PRK14989 | 847 | PRK14989, PRK14989, nitrite reductase subunit NirD | 9e-06 | |
| PRK10262 | 321 | PRK10262, PRK10262, thioredoxin reductase; Provisi | 2e-05 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 2e-05 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 8e-05 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 2e-04 | |
| PRK13984 | 604 | PRK13984, PRK13984, putative oxidoreductase; Provi | 2e-04 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 3e-04 | |
| PRK12814 | 652 | PRK12814, PRK12814, putative NADPH-dependent gluta | 4e-04 | |
| PRK12843 | 578 | PRK12843, PRK12843, putative FAD-binding dehydroge | 5e-04 | |
| PRK15317 | 517 | PRK15317, PRK15317, alkyl hydroperoxide reductase | 0.001 | |
| TIGR01317 | 485 | TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH | 0.001 | |
| pfam13434 | 335 | pfam13434, K_oxygenase, L-lysine 6-monooxygenase ( | 0.001 | |
| COG2081 | 408 | COG2081, COG2081, Predicted flavoproteins [General | 0.001 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 0.002 | |
| pfam01134 | 391 | pfam01134, GIDA, Glucose inhibited division protei | 0.003 | |
| pfam03486 | 405 | pfam03486, HI0933_like, HI0933-like protein | 0.003 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 997 bits (2580), Expect = 0.0
Identities = 438/500 (87%), Positives = 472/500 (94%), Gaps = 3/500 (0%)
Query: 1 MARKMLNDGELSQPNQEE--QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHP 58
MARKML DGE+++ N +E TH+DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHP
Sbjct: 1 MARKMLIDGEVAKVNADEANATHYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHP 60
Query: 59 ISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKT 118
ISSE IGGVGGTCVIRGCVPKKILVYGA+FGGE EDA++YGWE++EK+DF+WKKLLQKKT
Sbjct: 61 ISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEINEKVDFNWKKLLQKKT 120
Query: 119 DEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178
DEILRLNGIYKRLL+NAGVKLYEGEGKIVGPNEVEVTQLDGTKL Y+AKHILIATGSRAQ
Sbjct: 121 DEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180
Query: 179 RAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR 238
R IPG+ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMG+TVDL FRKELPLR
Sbjct: 181 RPNIPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR 240
Query: 239 GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298
GFDDEMRAVVARNLEGRGINLHPRT + +L K+E G+KVITDHGEE VADVVLFATGRAP
Sbjct: 241 GFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAP 300
Query: 299 NTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358
NTKRLNL+AVGVE+D+ GAVKVDE SRTN+PSIWA+GDVTNR+NLTPVALMEGTCFAKTV
Sbjct: 301 NTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTV 360
Query: 359 FGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQE 418
FGGQP KPDY +V CAVFCIPPLSVVGLSEE+A+EQ KGDILVFTSSFNPM+NTISGRQE
Sbjct: 361 FGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQE 420
Query: 419 KTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFV 478
KTVMKL+VDAET+KVLGASMCGP+APEIMQGIAVALKCGATKAQFDSTVGIHPS+AEEFV
Sbjct: 421 KTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFV 480
Query: 479 TMRSVTRRVAAASSNPKTNL 498
TMRSVTRRV A PKTNL
Sbjct: 481 TMRSVTRRV-TAKGKPKTNL 499
|
Length = 499 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 698 bits (1804), Expect = 0.0
Identities = 259/461 (56%), Positives = 322/461 (69%), Gaps = 16/461 (3%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
FD+DLFVIGAGSGGVRAAR +A GAKV I E VGGTCVIRGCVPKK+
Sbjct: 1 FDYDLFVIGAGSGGVRAARLAAALGAKVAIAEEFR----------VGGTCVIRGCVPKKL 50
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+VY + F EDA YGW V K FDWKKLL K EI RL+G+Y++ L+NAG +L +
Sbjct: 51 MVYASQFAEHFEDAAGYGWTV-GKARFDWKKLLAAKDQEIARLSGLYRKGLANAGAELLD 109
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELP 201
G ++VGPN VEV T Y+A+ ILIA G R + +PG EL ITS+EA L LP
Sbjct: 110 GRAELVGPNTVEVLASGKT---YTAEKILIAVGGRPPKPALPGHELGITSNEAFHLPTLP 166
Query: 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261
K ++ GGGYIAVEFA I+RG+G L++R + LRGFDD+MR +A LE RGI + P
Sbjct: 167 KSILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEERGIRILP 226
Query: 262 RTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320
+I + K ++G +K EEIVADVVLFATGR+PNT L L+A GV ++ GA+ V
Sbjct: 227 EDSITSISKDDDGRLKATLSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAV 286
Query: 321 DENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPP 380
DE SRT+ PSI+AVGDVT+R+NLTPVA+ E TCFA+T FG P D+ + AVF PP
Sbjct: 287 DEYSRTSTPSIYAVGDVTDRINLTPVAIHEATCFAETEFGNNPTSFDHDLIATAVFSQPP 346
Query: 381 LSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCG 440
+ VGL+EE+A + GDI V+ + F PM+ T SGRQEKT+MKLVVDA+ +KVLGA M G
Sbjct: 347 IGTVGLTEEEARRK-FGDIEVYRAEFRPMKATFSGRQEKTLMKLVVDAKDDKVLGAHMVG 405
Query: 441 PEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481
P+A EI+QG+A+ALK GATK FDSTV +HP+SAEE VTMR
Sbjct: 406 PDAAEIIQGLAIALKMGATKDDFDSTVAVHPTSAEELVTMR 446
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 633 bits (1635), Expect = 0.0
Identities = 213/464 (45%), Positives = 288/464 (62%), Gaps = 20/464 (4%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
D+DL VIG GSGG+ +A +A +GAKV + E +GGTCV GCVPKK+
Sbjct: 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR----------LGGTCVNVGCVPKKL 52
Query: 82 LVYGASFGGELED-ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLY 140
+ YGA D A YG++V E FDW KL+ + I RL+G Y+ L N GV L
Sbjct: 53 MWYGAQIAEAFHDYAPGYGFDVTENK-FDWAKLIANRDAYIDRLHGSYRNGLENNGVDLI 111
Query: 141 EGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEEL 200
EG + V + VEV +G + Y+A HILIATG R IPG E ITSD +LEEL
Sbjct: 112 EGFARFVDAHTVEV---NGER--YTADHILIATGGRPSIPDIPGAEYGITSDGFFALEEL 166
Query: 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260
PKR V+G GYIAVEFA + G+GS L R + PLRGFD ++R + +E +GI LH
Sbjct: 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLH 226
Query: 261 PRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319
K + K+ +G + + + GE + D +++A GR PNT L L+ GV++++ G +
Sbjct: 227 TNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYII 286
Query: 320 VDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPC-KPDYRDVPCAVFCI 378
VDE TNVP I+AVGDVT R+ LTPVA+ G ++ +F +P K DY ++P VF
Sbjct: 287 VDEYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSH 346
Query: 379 PPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGAS 437
PP+ VGL+EE+A EQ G+ ++ V+ SSF PM ++G ++ +MKLVV + EKV+G
Sbjct: 347 PPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLH 406
Query: 438 MCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481
G A E++QG AVA+K GATKA FD+TV IHP++AEEFVTMR
Sbjct: 407 GIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTMR 450
|
Length = 450 |
| >gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase | Back alignment and domain information |
|---|
Score = 570 bits (1471), Expect = 0.0
Identities = 264/477 (55%), Positives = 343/477 (71%), Gaps = 7/477 (1%)
Query: 17 EEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGC 76
E + H+DFDLF IGAGSGGVRA+RF++NFGA +CELPF ISS+ +GGVGGTCV+RGC
Sbjct: 73 ESERHYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGC 132
Query: 77 VPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAG 136
VPKK+LVY + + E E++R +GW+ + DW L+ K E+ RL GIYK +L NAG
Sbjct: 133 VPKKLLVYASKYSHEFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAG 192
Query: 137 VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALS 196
V L EG GKIV P+ V+V DG KL Y+A++ILIA G R IPG E AI SD AL
Sbjct: 193 VTLIEGRGKIVDPHTVDV---DG-KL-YTARNILIAVGGRPFIPDIPGIEHAIDSDAALD 247
Query: 197 LEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256
L P++ ++GGGYIA+EFA I+ G+ S V + R++ LRGFD+E+R VA + RG
Sbjct: 248 LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRG 307
Query: 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVA-DVVLFATGRAPNTKRLNLKAVGVEVDQT 315
I H + + +IKS +G + + + V+FATGR PNTK L L+ VGV++D+
Sbjct: 308 IEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKN 367
Query: 316 GAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAV 375
GA++VDE SRT+VPSIWAVGDVT+R+NLTPVALMEG AKT+FG +P KPDYR VP AV
Sbjct: 368 GAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAV 427
Query: 376 FCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLG 435
F PP+ VGL+EEQAIE+ GD+ VFT++F P++ T+SG ++ MKL+V A+T KVLG
Sbjct: 428 FSQPPIGQVGLTEEQAIEE-YGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLG 486
Query: 436 ASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASS 492
MCG +APEI+QG AVA+K G TKA FD+TVGIHP++AEEFVTMR+ TR++ S
Sbjct: 487 VHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKIRKDSP 543
|
Length = 558 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 435 bits (1121), Expect = e-150
Identities = 177/465 (38%), Positives = 251/465 (53%), Gaps = 18/465 (3%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
++D+ VIGAG G AA +A G KV + E +GGTC+ GC+P K
Sbjct: 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEK---------GERLGGTCLNVGCIPSKA 53
Query: 82 LVYGASFGGEL-EDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLY 140
L++ A E A+ YG D++KLL +K + L G + LL GV +
Sbjct: 54 LLHAAEVIEEARHAAKEYGISAEV-PKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVI 112
Query: 141 EGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA--ITSDEALSLE 198
GE + V P+ VEVT D +A +I+IATGSR + P PG + A + S +AL L
Sbjct: 113 RGEARFVDPHTVEVTGEDKET--ITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLL 170
Query: 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258
ELPK V++GGGYI +EFAS++ +GS V ++ R + L G D E+ + + LE G+
Sbjct: 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVK 230
Query: 259 LHPRTTIKELIKSEEGVKVITDHGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTG 316
+ T + + K ++GV V + GE I AD VL A GR PNT L L+ GVE+D G
Sbjct: 231 ILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRG 290
Query: 317 AVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVF 376
+KVD+ TNVP I+A+GDV L VA+ EG A+ + GG+ DYR +P VF
Sbjct: 291 FIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVF 350
Query: 377 CIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGA 436
P ++ VGL+EE+A E G D V F I+ + +KLVVD ET ++LGA
Sbjct: 351 TDPEIASVGLTEEEAKEAG-IDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGA 409
Query: 437 SMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481
+ GP A E++ IA+A++ GAT T+ HP+ +E
Sbjct: 410 HIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454
|
Length = 454 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 400 bits (1030), Expect = e-136
Identities = 194/463 (41%), Positives = 274/463 (59%), Gaps = 20/463 (4%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+D VIG GSGG+ +AR +A GAK + E + ++ GGTCV GCVPKK++
Sbjct: 3 YDYLVIGGGSGGIASARRAAEHGAKALLVE------AKKL----GGTCVNVGCVPKKVMW 52
Query: 84 YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE 143
Y + + DA YG+ + + F+W +L +K+ + RLNGIY++ L V + G
Sbjct: 53 YASDLAERMHDAADYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGH 112
Query: 144 GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPK 202
+ VEV +G Y+A HILIATG + IPG EL SD +LEELPK
Sbjct: 113 ARFTKDGTVEV---NGRD--YTAPHILIATGGKPSFPENIPGAELGTDSDGFFALEELPK 167
Query: 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPR 262
R V++G GYIAVE A + G+GS L+ R E LR FD + + E GIN+H
Sbjct: 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKL 227
Query: 263 TTIKELIKSEEGVKVI--TDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320
+ ++ K+ EG VI D D +++A GR PNTK L L+ VG+++++ G + V
Sbjct: 228 SKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIV 287
Query: 321 DENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQP-CKPDYRDVPCAVFCIP 379
DE TNVP I+A+GDV ++ LTPVA+ G ++ +F G+ K DY +VP VF P
Sbjct: 288 DEYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHP 347
Query: 380 PLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASM 438
P+ +GL+E++AIE+ GK +I V+ SSF PM ++ ++K MKLV + EKV+G
Sbjct: 348 PIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHG 407
Query: 439 CGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481
G E++QG AVA+K GATKA FD+TV IHP+S+EE VTMR
Sbjct: 408 IGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTMR 450
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Score = 359 bits (923), Expect = e-119
Identities = 190/475 (40%), Positives = 272/475 (57%), Gaps = 13/475 (2%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+D+DL VIG GSGG+ AA+ +A +GAKV + + P G+GGTCV GC+PKK+
Sbjct: 1 YDYDLIVIGGGSGGLAAAKEAAAYGAKVMLLDF-VTPTPLGTRWGIGGTCVNVGCIPKKL 59
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ A G L+D+R+YGW+V E + DWK+L++ + I LN Y+ L VK
Sbjct: 60 MHQAALLGQALKDSRNYGWKVEETVKHDWKRLVEAVQNHIGSLNWGYRVALREKKVKYEN 119
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEEL 200
+ V + ++ T G + YSA+ LIATG R + IPG +EL ITSD+ SL
Sbjct: 120 AYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAKELCITSDDLFSLPYC 179
Query: 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260
P + +V+G Y+A+E A G+G V ++ R + LRGFD + V ++E G+
Sbjct: 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK 238
Query: 261 PRTTIKELIKSEEGVKV-ITDHGEEIVA--DVVLFATGRAPNTKRLNLKAVGVEVDQ-TG 316
+ ++ + E V V TD I D VL A GR T++LNL+ VGV++++ TG
Sbjct: 239 RQFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTG 298
Query: 317 AVKVDENSRTNVPSIWAVGDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAV 375
+ DE +TNVP I+AVGD+ ++ LTPVA+ G A+ +F G DY +VP V
Sbjct: 299 KIPADEEEQTNVPYIYAVGDILEDKPELTPVAIQAGRLLAQRLFKGSTVICDYENVPTTV 358
Query: 376 FCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQE--KTVMKLVVDA-ETE 431
F GLSEE+A+E+ G+ ++ VF S F P+ TI R K KLV + E E
Sbjct: 359 FTPLEYGACGLSEEKAVEKFGEENVEVFHSYFWPLEWTIPSRDNHNKCYAKLVCNKKENE 418
Query: 432 KVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRR 486
+V+G + GP A E+ QG A AL+CG TK D+T+GIHP AE F T+ SVT+R
Sbjct: 419 RVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTL-SVTKR 472
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 354 bits (909), Expect = e-117
Identities = 188/471 (39%), Positives = 279/471 (59%), Gaps = 14/471 (2%)
Query: 24 FDLFVIGAGSGGVRAARFSAN-FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
FDL VIGAGSGG+ A +A + +V + ++ H +GGTCV GCVPKK++
Sbjct: 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVVDVQTHH-GPPFYAALGGTCVNVGCVPKKLM 62
Query: 83 VYGASFGGELEDARSYGWEVH-EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLY 140
V GA + L ++ +GWE + +WK L+ K +L +N Y+ + ++ G+ +
Sbjct: 63 VTGAQYMDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFF 122
Query: 141 EGEGKIVGPNEVEVTQL----DGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALS 196
G G + N V V + K A+HIL+ATGS Q IPG E I+S+EA
Sbjct: 123 LGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWPQMLGIPGIEHCISSNEAFY 182
Query: 197 LEELPKRAVVLGGGYIAVEFASI---WRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLE 253
L+E P+R + +GGG+I+VEFA I ++ G V L +R + LRGFD +R + + L
Sbjct: 183 LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLR 242
Query: 254 GRGINLHPRTTIKELIKSEEGVKVIT-DHGEEIVADVVLFATGRAPNTKRLNLKAVGVEV 312
GIN+ ++ + +G K +T + G+ + DVV+ A GR P T+ L L VGVE+
Sbjct: 243 ANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVEL 302
Query: 313 DQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVP 372
+ GA++VDE SRTNVP+I+A+GDVT+R+ LTPVA+ EG F TVFG +P K D+ V
Sbjct: 303 TKKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVA 362
Query: 373 CAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ-EKTVMKLVVDAETE 431
AVF IPP+ GL EE A ++ + + V+ SSF P+ + ISG + +K V K+V +
Sbjct: 363 SAVFSIPPIGTCGLVEEDAAKKFE-KVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADG 421
Query: 432 KVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482
VLG + G +PEI+Q + + LK A + F +T+G+HP+SAEE +MR+
Sbjct: 422 TVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMRT 472
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 328 bits (843), Expect = e-108
Identities = 150/465 (32%), Positives = 223/465 (47%), Gaps = 35/465 (7%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGV-GGTCVIRGCVPKKI 81
+D+ VIGAG G AAR +A G KV + E G GGTC+ GC+P K
Sbjct: 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIE-----------KGPLGGTCLNVGCIPSKA 51
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL-NGIYKRLLSNAGVKLY 140
L+ A E + A +G + D+KK++ + E R G+ + L +
Sbjct: 52 LIAAAEAFHEAKHAEEFGIHA-DGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKI 110
Query: 141 EGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA-----ITSDEAL 195
+G + V PN VEV +G + AK+I+IATGSR PIPG L +TSD+A
Sbjct: 111 KGTARFVDPNTVEV---NGER--IEAKNIVIATGSR--VPPIPGVWLILGDRLLTSDDAF 163
Query: 196 SLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255
L++LPK V+GGG I +E +G V + R + L D E+ + L
Sbjct: 164 ELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE 223
Query: 256 GINLHPRTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRAPNTKRLNLKAVGVEV 312
+ + + KS + + G E I AD VL ATGR PNT L L+ G+E+
Sbjct: 224 -FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIEL 282
Query: 313 DQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVP 372
D+ G VDE+++T+VP I+A GDV + L A EG A+ G Y +P
Sbjct: 283 DERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIP 342
Query: 373 CAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSF--NPMRNTISGRQEKTVMKLVVDAET 430
VF P ++ VGL+EE+ G D +V F R + G+ + +K+ D +T
Sbjct: 343 SVVFTDPQIASVGLTEEELKAAG-IDYVVGEVPFEAQG-RARVMGKND-GFVKVYADKKT 399
Query: 431 EKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
++LGA + GP+A ++ +A A++ G T HP+ +E
Sbjct: 400 GRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSE 444
|
Length = 460 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 324 bits (833), Expect = e-106
Identities = 177/468 (37%), Positives = 257/468 (54%), Gaps = 34/468 (7%)
Query: 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPK 79
F++D+ VIGAG GG AA +A G KV I E +GGTC+ RGC+P
Sbjct: 1 FAFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEK----------EKLGGTCLNRGCIPS 50
Query: 80 KILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKL 139
K L++ A E + +G + E + D+KK+ + K + RL G + LL V +
Sbjct: 51 KALLHAAERADEARHSEDFGIKA-ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDI 109
Query: 140 YEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQE----LAITSDEAL 195
GE K+V PN V V DG + Y+AK+I++ATGSR + +PG E + TSDEAL
Sbjct: 110 IRGEAKLVDPNTVRVMTEDGEQT-YTAKNIILATGSRPRE--LPGIEIDGRVIWTSDEAL 166
Query: 196 SLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE-LP--LRGFDDEMRAVVARNL 252
+L+E+PK VV+GGGYI VEFAS + +G+ V ++ E LP L G D E+ + R L
Sbjct: 167 NLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIV---EALPRILPGEDKEISKLAERAL 223
Query: 253 EGRGINLHPRTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRAPNTKRLNLKAVG 309
+ RGI + K++ ++++GV V + G E + AD VL A GR PNT+ L L+ +G
Sbjct: 224 KKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELG 283
Query: 310 VEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYR 369
V+ D+ G ++VDE RTNVP+I+A+GD+ L A EG A G P DYR
Sbjct: 284 VKTDR-GFIEVDEQLRTNVPNIYAIGDIVGGPMLAHKASAEGI-IAAEAIAGNPHPIDYR 341
Query: 370 DVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSF--NPMRNTISGRQEKTVMKLVVD 427
+P + P ++ VGL+E +A E+G D+ V F N + G + V KL+ D
Sbjct: 342 GIPAVTYTHPEVASVGLTEAKAKEEG-FDVKVVKFPFAGNG-KALALGETDGFV-KLIFD 398
Query: 428 AETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
+ +VLGA M G A E++Q +A+ AT T+ HP+ +E
Sbjct: 399 KKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSE 446
|
Length = 462 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 305 bits (784), Expect = 4e-99
Identities = 164/459 (35%), Positives = 253/459 (55%), Gaps = 22/459 (4%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+D+ VIG G GG AA +A G KV + E + +GGTC+ GC+P K L+
Sbjct: 2 YDVIVIGGGPGGYVAAIRAAQLGLKVALVEKEY----------LGGTCLNVGCIPTKALL 51
Query: 84 YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE 143
+ A E++ A+ G EV E + DW+K+ ++K + +L G LL V + +GE
Sbjct: 52 HSAEVYDEIKHAKDLGIEV-ENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGE 110
Query: 144 GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEEL 200
K + P V VT +G + + AK+I+IATGSR + P P ++ ITS AL+LEE+
Sbjct: 111 AKFLDPGTVSVTGENGEE-TLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEV 169
Query: 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260
P+ V++GGG I VEFASI+ +GS V ++ + L G D E+ V+ + L+ +G+ +
Sbjct: 170 PESLVIIGGGVIGVEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVLQKALKKKGVKIL 229
Query: 261 PRTTIKELIKSEEGVKVITDHGEE--IVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318
T + + K+++ V GE + + VL A GR PNT+ L L+ +GVE+D+ G +
Sbjct: 230 TNTKVTAVEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRI 289
Query: 319 KVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCI 378
VDE RTNVP I+A+GDV L VA EG A+ + G +P DY VP ++
Sbjct: 290 VVDEYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPAHIDYDAVPSVIYTD 349
Query: 379 PPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT--VMKLVVDAETEKVLGA 436
P ++ VGL+EEQA E G V F N + +T +K++ D +T ++LGA
Sbjct: 350 PEVASVGLTEEQAKEAG---YDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGA 406
Query: 437 SMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
+ GP A E++ A+A++ T + T+ HP+ +E
Sbjct: 407 HIIGPHATELISEAALAMELEGTVEELARTIHPHPTLSE 445
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 304 bits (780), Expect = 3e-97
Identities = 172/526 (32%), Positives = 268/526 (50%), Gaps = 85/526 (16%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+DL VIG GSGG+ AAR +A AKV + E + +GGTCV GCVPKKI+
Sbjct: 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY----------LGGTCVNVGCVPKKIM 97
Query: 83 VYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDE-ILRLNGIYKRLLSNAGVKLYE 141
AS LE++R YG++ + LL ++ D+ I RLN IY++ L V+ +E
Sbjct: 98 FNAASIHDILENSRHYGFDTQFSFNL---PLLVERRDKYIRRLNDIYRQNLKKDNVEYFE 154
Query: 142 GEGKIVGPNEVEVTQL--------------------------DGTKLSYSAKHILIATGS 175
G+G ++ N+V + ++ DG + K+ILIA G+
Sbjct: 155 GKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIE--GKNILIAVGN 212
Query: 176 RAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235
+ + G+E I+SD+ ++E KR + G GYIAVE ++ +G+ + R
Sbjct: 213 KPIFPDVKGKEFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271
Query: 236 PLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFA 293
LR FD+ + + +++ IN+ ++E+ K +E ++D + D V++
Sbjct: 272 LLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYC 331
Query: 294 TGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV---------------- 337
GR+PNT+ LNLKA+ ++ G +KVD+N RT+V I+AVGD
Sbjct: 332 VGRSPNTEDLNLKALNIKT-PKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLK 390
Query: 338 ------------------TNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIP 379
+ LTPVA+ G A +FG +Y+ +P +F P
Sbjct: 391 LYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHP 450
Query: 380 PLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTI----SGRQEKTVMKLVVDAETEKVL 434
P+ +GLSE++AI+ GK ++ ++ S F + ++ ++EKT +KLV + E +
Sbjct: 451 PIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIK 510
Query: 435 GASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480
G + G A EI+QG AVALK ATKA FD T+ IHP++AEEFVTM
Sbjct: 511 GLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTM 556
|
Length = 561 |
| >gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated | Back alignment and domain information |
|---|
Score = 297 bits (762), Expect = 9e-96
Identities = 160/464 (34%), Positives = 228/464 (49%), Gaps = 34/464 (7%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+D VIGAG G A +A G KV + E G +GGTCV GCVP K L+
Sbjct: 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIER----------GLLGGTCVNTGCVPTKTLI 55
Query: 84 YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEIL--RLNGIYKRLLSNAGVKLYE 141
A A YG V + D+K ++ +K I +G + L GV ++
Sbjct: 56 ASARAAHLARRAAEYGVSVGGPVSVDFKAVMARK-RRIRARSRHGSEQWLRGLEGVDVFR 114
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA--ITSDEALSLEE 199
G + PN V V G L AK I I TG+RA PIPG + +T++ SL+E
Sbjct: 115 GHARFESPNTVRV---GGETLR--AKRIFINTGARAAIPPIPGLDEVGYLTNETIFSLDE 169
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259
LP+ V++GGGYI +EFA ++R GS V ++ R L D+++ A V LE GI++
Sbjct: 170 LPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDV 229
Query: 260 HPRTTIKELIKSEEGVKVI---TDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTG 316
+ + +G+ V EI +L A GR PNT L L+A GVE D G
Sbjct: 230 RLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARG 289
Query: 317 AVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVF 376
+KVD+ RT P I+A GD R T A + A + G K R VP A +
Sbjct: 290 YIKVDDQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATY 349
Query: 377 CIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGR-----QEKTVMKLVVDAETE 431
PPL+ VG++E +A + G+ +LV T PM T GR + + MK+VVDA+T+
Sbjct: 350 TDPPLARVGMTEAEARKSGR-RVLVGT---RPM--TRVGRAVEKGETQGFMKVVVDADTD 403
Query: 432 KVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
++LGA++ G E++ I A+ GA + IHP+ +E
Sbjct: 404 RILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE 447
|
Length = 463 |
| >gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 294 bits (754), Expect = 4e-94
Identities = 174/486 (35%), Positives = 255/486 (52%), Gaps = 28/486 (5%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
F +DL VIG GSGG+ AA+ +A G KV + + P + G+GGTCV GCVPKK+
Sbjct: 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDY-VKPSTQGTKWGLGGTCVNVGCVPKKL 62
Query: 82 LVYGASFGGELE-DARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLY 140
+ Y A+ G D++ YGW+ F+W KL+ + I LN Y+ L ++ V+
Sbjct: 63 MHYAANIGSIFHHDSQMYGWKTSSS--FNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYI 120
Query: 141 EGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ-RAPIPG-QELAITSDEALSLE 198
G K+ + V + + +AK+ILIATG R +PG +E +ITSD+ SL
Sbjct: 121 NGLAKLKDEHTVSYGDN-SQEETITAKYILIATGGRPSIPEDVPGAKEYSITSDDIFSLS 179
Query: 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258
+ P + +++G YI +E A +G V + R +PLRGFD + V ++ +G
Sbjct: 180 KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVR-SIPLRGFDRQCSEKVVEYMKEQGTL 238
Query: 259 LHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318
+ K ++ +KV+ G + D VL+ATGR P+ K LNL A+GV V+++
Sbjct: 239 FLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNK- 297
Query: 319 KVDENSRTNVPSIWAVGDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFC 377
+ N TN+P+I+AVGDV R LTPVA+ G A+ +F DY +P +F
Sbjct: 298 IIAPNDCTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFT 357
Query: 378 IPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQE---------------KTV 421
G S E AI + G+ DI + FN + R++ +
Sbjct: 358 PIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCL 417
Query: 422 MKLV-VDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480
KLV V +E KV+G GP A EI QG ++ALK GA K+ FDS +GIHP+ AE F+ +
Sbjct: 418 AKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFMNL 477
Query: 481 RSVTRR 486
SVTRR
Sbjct: 478 -SVTRR 482
|
Length = 499 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 287 bits (735), Expect = 9e-92
Identities = 157/462 (33%), Positives = 226/462 (48%), Gaps = 30/462 (6%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+DL +IG+G+ AA +A GA V + E G +GGTCV GCVP K+L+
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVER----------GPLGGTCVNVGCVPSKMLL 50
Query: 84 YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTD--EILRLNGIYKRLLSNAGVKLYE 141
A G +DF +LL+ K + E LR Y+ +LS+ GV
Sbjct: 51 RAAEVAHYARKPPFGGLAATVAVDFG--ELLEGKREVVEELRHEK-YEDVLSSYGVDYLR 107
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG--QELAITSDEALSLEE 199
G + P V+V D + AK LIATG+R PIPG + +TS+EAL+L+
Sbjct: 108 GRARFKDPKTVKV---DLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEALALDR 164
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259
+P+ V+GGG I VE A + +GS V +L R + L + E+ A V L GI +
Sbjct: 165 IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEV 224
Query: 260 HPRTTIKELIKSEEGVKVITD---HGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTG 316
+K + G + + E+ AD +L ATGR PNT L L+ GV++D+ G
Sbjct: 225 VTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERG 284
Query: 317 AVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVF 376
+ VDE RT+ P I+A GDVT + L VA EG A+ GG K D +P VF
Sbjct: 285 GILVDETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVF 344
Query: 377 CIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISG---RQEKTVMKLVVDAETEKV 433
P ++ VGL+E +A + G + P+ N R + +KLV + T KV
Sbjct: 345 TDPAVASVGLTEAEAQKAG----IECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKV 400
Query: 434 LGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
LG + PEA E++ A+A++ G T T+ P+ AE
Sbjct: 401 LGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAE 442
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 2e-77
Identities = 143/472 (30%), Positives = 224/472 (47%), Gaps = 51/472 (10%)
Query: 23 DFDLFVIGAGSGG-VRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+DL +IG GSG + RF+ ++ I E G GGTC+ GC+P K+
Sbjct: 1 HYDLIIIGTGSGNSILDERFA---DKRIAIVEK----------GTFGGTCLNVGCIPTKM 47
Query: 82 LVYGASFGGELEDARSYGWEVHEKID-FDWKKLLQK---KTDEILRLNGIYKRLLSNAGV 137
VY A + +A G V ++D W ++ + + D I G R +
Sbjct: 48 FVYAADVARTIREAARLG--VDAELDGVRWPDIVSRVFGRIDPIAA-GGEEYRGRDTPNI 104
Query: 138 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAI--TSDEAL 195
+Y G + +GP + DG +++ A ++IA GSR P+ TSD +
Sbjct: 105 DVYRGHARFIGPKTLRTG--DGEEIT--ADQVVIAAGSRPVIPPVIADSGVRYHTSDTIM 160
Query: 196 SLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255
L ELP+ V++GGG+IA EFA ++ +G V ++ R LR DD++ L +
Sbjct: 161 RLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTE-LASK 219
Query: 256 GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQT 315
++ + + + GV + D G + ADV+L ATGR PN L+ A GV+VD+
Sbjct: 220 RWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDED 279
Query: 316 GAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV-----FGGQPCKPDYRD 370
G V VDE RT+ ++A+GDV++ L VA E A+ V D+R
Sbjct: 280 GRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHE----ARVVQHNLLHPDDLIASDHRF 335
Query: 371 VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFN------PMRNTISGRQEKTVMKL 424
VP AVF P ++ VGL+E +A G DI V ++ M +T +G +KL
Sbjct: 336 VPAAVFTHPQIASVGLTENEARAAGL-DITVKVQNYGDVAYGWAMEDT-TG-----FVKL 388
Query: 425 VVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQF-DSTVGIHPSSAE 475
+ D +T ++LGA + GP+A ++Q + A+ G + IHP+ E
Sbjct: 389 IADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPE 440
|
Length = 451 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 4e-73
Identities = 141/477 (29%), Positives = 224/477 (46%), Gaps = 30/477 (6%)
Query: 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVP 78
+D+DL VIG+G G AA +A G +V + E +GG C G +P
Sbjct: 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE------RYRNVGGG---CTHTGTIP 51
Query: 79 KKILVYGASFGGELEDARSYGW--EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAG 136
K L L K+ + LL + I + + +
Sbjct: 52 SKALREAVL---RLIGFNQNPLYSSYRVKLRITFADLLARADHVINKQVEVRRGQYERNR 108
Query: 137 VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IP-GQELAITSDEA 194
V L +G + V P+ VEV DG + +A I+IATGSR R P + SD
Sbjct: 109 VDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDSDSI 168
Query: 195 LSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEG 254
LSL+ LP+ ++ G G I E+ASI+ +G V L+ ++ L DDE+ ++ +L
Sbjct: 169 LSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRD 228
Query: 255 RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQ 314
G+ + ++++ ++GV V G++I AD +L+A GR NT LNL+ G+E D
Sbjct: 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADS 288
Query: 315 TGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCA 374
G +KV+EN +T VP I+AVGDV +L ++ +G A+ G+ D+P
Sbjct: 289 RGQLKVNENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAV-GEATAHLIEDIPTG 347
Query: 375 VFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM-RNTISGRQEKTVMKLVVDAETEKV 433
++ IP +S VG +E++ K V + F + R I+G ++K++ ET ++
Sbjct: 348 IYTIPEISSVGKTEQELTAA-KVPYEVGRARFKELARAQIAG-DNVGMLKILFHRETLEI 405
Query: 434 LGASMCGPEAPEIMQ-GIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAA 489
LG G A EI+ G A+ ++ T F +T +P+ AE + RVAA
Sbjct: 406 LGVHCFGERATEIIHIGQAI-MEQKGTIEYFVNTTFNYPTMAEAY--------RVAA 453
|
Length = 461 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 3e-72
Identities = 147/468 (31%), Positives = 232/468 (49%), Gaps = 28/468 (5%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+DL +IG G GG AA + G K + E G +GGTC+ +GC+P K L+
Sbjct: 5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEK----------GKLGGTCLHKGCIPSKALL 54
Query: 84 YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE 143
+ A + A +G V D+ K+ ++K + RL LL + ++ G
Sbjct: 55 HSAEVFQTAKKASPFGISV-SGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGI 113
Query: 144 GKIVGPNE-------VEVTQLDGTKLSYSAKHILIATGSRAQRAPI--PGQELAITSDEA 194
G+I+GP+ V V G +++LIATGSR P E I+SDEA
Sbjct: 114 GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFDGEYVISSDEA 173
Query: 195 LSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEG 254
LSLE LPK V++GGG I +E+AS+ G V ++ + L D E+ VAR L+
Sbjct: 174 LSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKK 233
Query: 255 RGINLHPRTTIKEL-IKSEEGVKVITDHG---EEIVADVVLFATGRAPNTKRLNLKAVGV 310
G+ + + L +K + GV ++ +H + + AD VL + GR PNT+ + L+ +
Sbjct: 234 LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDI 293
Query: 311 EVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRD 370
+V+ G +++D+ +T I+A+GDV L VA+ EG A+ + G +P DY
Sbjct: 294 DVEG-GFIQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAA 352
Query: 371 VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM-RNTISGRQEKTVMKLVVDAE 429
+P + P ++ VGL+EE+A E G D+ V F + G + V K+V D +
Sbjct: 353 IPACCYTDPEVASVGLTEEEAKEAGY-DVKVGKFPFAANGKALTYGESDGFV-KVVADRD 410
Query: 430 TEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477
T +LG GP E++ A+AL+ GA + T+ HP+ +E
Sbjct: 411 THDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAI 458
|
Length = 472 |
| >gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 3e-70
Identities = 147/476 (30%), Positives = 245/476 (51%), Gaps = 43/476 (9%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
FD+ VIGAG GG AA +A G KV E +P + +GGTC+ GC+P K L
Sbjct: 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNP---KGKPALGGTCLNVGCIPSKAL 60
Query: 83 VYGASFGGELEDAR----SYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVK 138
+ + E E+A +G V + + D K++ +K + ++ G + L +
Sbjct: 61 LASS---EEFENAGHHFADHGIHV-DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKIT 116
Query: 139 LYEGEGKIVG----PNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAIT 190
+ +G G VG E++VT D T ++ AKH++IATGS + +PG ++ +
Sbjct: 117 VLKGRGSFVGKTDAGYEIKVTGEDETVIT--AKHVIIATGSEPR--HLPGVPFDNKIILD 172
Query: 191 SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP--LRGFDDEMRAVV 248
+ AL+ E+PK+ V+G G I +E S+WR +G+ V +L + LP L D+++
Sbjct: 173 NTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTIL--EALPAFLAAADEQVAKEA 230
Query: 249 ARNLEGRGINLHPRTTIKELIKSEEGVKV-ITDHGEE---IVADVVLFATGRAPNTKRLN 304
A+ +G+++H I E+ +GV V TD E + D ++ + GR PNT L
Sbjct: 231 AKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLG 290
Query: 305 LKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPC 364
L+AVG+++D+ G + VD++ RTNVP+++A+GDV L A EG A+ + GQ
Sbjct: 291 LEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERI-AGQKG 349
Query: 365 KPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGR-----QEK 419
DY +P ++ P ++ VG +E+Q +G + F M N GR +
Sbjct: 350 HIDYNTIPWVIYTSPEIAWVGKTEQQLKAEG---VEYKAGKFPFMAN---GRALAMGEPD 403
Query: 420 TVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
+K++ DA+T+++LG + GP A E++ VA++ A+ HP+ +E
Sbjct: 404 GFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSE 459
|
Length = 475 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 2e-68
Identities = 106/322 (32%), Positives = 148/322 (45%), Gaps = 49/322 (15%)
Query: 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVY 84
D+ +IG G G+ AA A G KV +I GGTC RGC+PKK+L+
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVA------------LIEREGGTCYNRGCLPKKLLLE 48
Query: 85 GASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEG 144
A E + + LL V + GE
Sbjct: 49 VAEGLELAIGLAL---------------------PEEVYKEFGVEVLLGTEVVDIDRGEK 87
Query: 145 KIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA-----ITSDEALSLEE 199
+V + T + ++IATG+R + IPG E+A I SDE L L E
Sbjct: 88 TVVLKDVE-------TGREITYDKLIIATGARPRIPGIPGVEVATLRGVIDSDEILELLE 140
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259
LPKR VV+GGGYI +E A+ +G V ++ R++ L DDE+ A + LE + +
Sbjct: 141 LPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAALLEKLEKLLLGV 200
Query: 260 HPRTTIK--ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGA 317
+ + + V+V GEE+ ADVVL A GR PNT+ L+ GVE+D+ G
Sbjct: 201 TVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTE--LLEQAGVELDERGY 258
Query: 318 VKVDENSRTNVPSIWAVGDVTN 339
+ VDE RT+VP I+A GDV
Sbjct: 259 IVVDEYLRTSVPGIYAAGDVAE 280
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 5e-66
Identities = 144/468 (30%), Positives = 222/468 (47%), Gaps = 53/468 (11%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+DL VIG G G A A+ G KV + E S+ + GGTC+ GC+P K L+
Sbjct: 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVE------ESKAM--YGGTCINIGCIPTKTLL 55
Query: 84 YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE 143
A E + K RL G +L+ +GV LY+ E
Sbjct: 56 VAAEKNLSFEQV------------------MATKNTVTSRLRGKNYAMLAGSGVDLYDAE 97
Query: 144 GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT-----SDEALSLE 198
V +EV D K+ +A+ I+I TG+ + PIPG LA + S SLE
Sbjct: 98 AHFVSNKVIEVQAGD-EKIELTAETIVINTGAVSNVLPIPG--LADSKHVYDSTGIQSLE 154
Query: 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258
LP+R ++GGG I +EFA ++ +GS V +L L + + A+ + +E GI
Sbjct: 155 TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGIT 214
Query: 259 LHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318
E +K++ ++ E D +L+ATGR PNT+ L L+ +E+ + GA+
Sbjct: 215 FLLNAHTTE-VKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAI 273
Query: 319 KVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDY-----RDVPC 373
KVD+ +T+VP ++AVGDV T ++L + + VFG Y +VP
Sbjct: 274 KVDDYCQTSVPGVFAVGDVNGGPQFTYISLDD----FRIVFGYLTGDGSYTLEDRGNVPT 329
Query: 374 AVFCIPPLSVVGLSEEQAIEQG----KGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAE 429
+F PPLS VGL+E++A E G ++LV + N + G K+VV+ E
Sbjct: 330 TMFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRG-----AFKVVVNTE 384
Query: 430 TEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477
T+++LGA++ G + EI+ I +A+ F + HP+ AE
Sbjct: 385 TKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENL 432
|
Length = 438 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 4e-65
Identities = 136/463 (29%), Positives = 220/463 (47%), Gaps = 31/463 (6%)
Query: 23 DFDLFVIGAGSGG-VRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+DL +IG GSG + RF+ ++ I E G GGTC+ GC+P K+
Sbjct: 2 HYDLIIIGTGSGNSIPDPRFA---DKRIAIVEK----------GTFGGTCLNVGCIPTKM 48
Query: 82 LVYGASFGGELEDARSYGWEVHEKID-FDW----KKLLQKKTDEILRLNGIYKRLLSNAG 136
VY A + ++ G + +ID W ++ + D I Y+R
Sbjct: 49 FVYAAEVAQSIGESARLG--IDAEIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPN 106
Query: 137 VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA--ITSDEA 194
+ +Y+G + VGP + G + I+IA GSR P T+++
Sbjct: 107 IDVYDGHARFVGPRTLRT----GDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDI 162
Query: 195 LSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEG 254
+ L ELP+ V++GGGYIA EFA ++ +G+ V ++ R LR D+++ +
Sbjct: 163 MRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFT-EIAK 221
Query: 255 RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQ 314
+ ++ + + + +GV + D G + ADV+L ATGR PN L+ +A GVEVD+
Sbjct: 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDE 281
Query: 315 TGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKP-DYRDVPC 373
G +KVDE RT+ +WA+GDV++ L VA E + + + VP
Sbjct: 282 DGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPS 341
Query: 374 AVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKV 433
AVF P ++ VGL+E++A E G DI V ++ + + KL+ D +T K+
Sbjct: 342 AVFTHPQIATVGLTEQEAREAGH-DITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKL 400
Query: 434 LGASMCGPEAPEIMQGIAVALKCGATKAQF-DSTVGIHPSSAE 475
LGA + GP+A ++Q + A+ G + IHP+ E
Sbjct: 401 LGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPE 443
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 3e-60
Identities = 145/465 (31%), Positives = 226/465 (48%), Gaps = 33/465 (7%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+ V+GAG G AA +A+ G + E +GG C+ GC+P K L+
Sbjct: 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVE---------RYSTLGGVCLNVGCIPSKALL 55
Query: 84 YGASFGGELEDARSYGWEVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG 142
+ A E + +G E KID D K+ +K + +L G + V + G
Sbjct: 56 HVAKVIEEAKALAEHGIVFGEPKIDID--KMRARKEKVVKQLTGGLAGMAKGRKVTVVNG 113
Query: 143 EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRAPIP-GQELAITSDEALSLEEL 200
GK G N +EVT DG + +IA GSR Q IP S +AL L+E+
Sbjct: 114 LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALELKEV 173
Query: 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLL--FRKELPLRGFDDEMRAVVARNLEGR-GI 257
PKR +V+GGG I +E +++ +GS VD++ F + +P D ++ V + ++ + I
Sbjct: 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP--AADKDIVKVFTKRIKKQFNI 231
Query: 258 NLHPRTTIKELIKSEEGVKV-ITDHG---EEIVADVVLFATGRAPNTKRLNLKAVGVEVD 313
L + T E E+G+ V + E D VL A GR PN K L+ + GVEVD
Sbjct: 232 MLETKVTAVEA--KEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVD 289
Query: 314 QTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPC 373
+ G ++VD+ RTNVP I+A+GD+ + L + EG A+ V G+ D + +P
Sbjct: 290 ERGFIRVDKQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAE-VIAGKKHYFDPKVIPS 348
Query: 374 AVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFN---PMRNTISGRQEKTVMKLVVDAET 430
+ P ++ VGL+E++A E+G I T++F R S + KL+ D ET
Sbjct: 349 IAYTEPEVAWVGLTEKEAKEEG---IEYETATFPWAASGRAIASDCADGMT-KLIFDKET 404
Query: 431 EKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
+VLG ++ G A E++ I +A++ G T+ HP+ E
Sbjct: 405 HRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 449
|
Length = 471 |
| >gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 1e-57
Identities = 133/456 (29%), Positives = 223/456 (48%), Gaps = 22/456 (4%)
Query: 26 LFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYG 85
L VIG G G AA +A G V + + +GGTC+ GC+P K L+
Sbjct: 3 LVVIGGGPAGYVAAITAAQNGKNVTLIDE----------ADLGGTCLNEGCMPTKSLLES 52
Query: 86 ASFGGELEDARSYGWEV-HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEG 144
A +++ A +G + + I DWK++ +K+ + +L + L+ +K+ +G+
Sbjct: 53 AEVHDKVKKANHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKA 112
Query: 145 KIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR---APIPGQELAITSDEALSLEELP 201
+ V V + A+ +IA GS AP G + I S A+SL +P
Sbjct: 113 SFETDHRVRVEY-GDKEEVVDAEQFIIAAGSEPTELPFAPFDG-KWIINSKHAMSLPSIP 170
Query: 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261
+++GGG I EFASI+ +G+ V ++ L G D+++ ++ LE G+ +
Sbjct: 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFT 230
Query: 262 RTTIKELIKSEEGVKVITDHGE-EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320
+K L ++ + E+ A+ VL + GR P ++LNL+ GV+ G + V
Sbjct: 231 GAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISV 289
Query: 321 DENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPP 380
+E+ +TNVP I+A GDV + L VA EGT A G+ K +Y VP ++ P
Sbjct: 290 NEHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHA-SGEDVKVNYHAVPRCIYTSPE 348
Query: 381 LSVVGLSEEQAIEQGKGDILVFTSSFNPM-RNTISGRQEKTVMKLVVDAETEKVLGASMC 439
++ VGL+E+QA EQ GDI + F + I G Q V K++V+ + ++++G S+
Sbjct: 349 IASVGLTEKQAREQ-YGDIRIGEFPFTANGKALIIGEQTGKV-KVIVEPKYQEIVGISII 406
Query: 440 GPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
GP A E++ V + T + + HP+ +E
Sbjct: 407 GPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSE 442
|
Length = 458 |
| >gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 2e-55
Identities = 140/438 (31%), Positives = 207/438 (47%), Gaps = 30/438 (6%)
Query: 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGAS 87
VIG+G + AA + GA+V + E G +GGTCV GCVP KI++ A
Sbjct: 103 VIGSGGAAMAAALKAVEQGARVTLIER----------GTIGGTCVNVGCVPSKIMIRAAH 152
Query: 88 FGG-ELEDARSYGWEVHEKIDFDWKKLL---QKKTDEILRLNGIYKRLL-SNAGVKLYEG 142
E G D +LL Q + DE LR + Y+ +L N + + G
Sbjct: 153 IAHLRRESPFDGGIAATVPT-IDRSRLLAQQQARVDE-LR-HAKYEGILDGNPAITVLHG 209
Query: 143 EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA----ITSDEALSLE 198
E + + V DG + + LIATG+ PIPG L TS EAL +
Sbjct: 210 EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPG--LKETPYWTSTEALVSD 267
Query: 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258
+P+R V+G +A+E A + +GS V +L R L R D + V GI
Sbjct: 268 TIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFRE-DPAIGEAVTAAFRAEGIE 326
Query: 259 LHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318
+ T ++ + + T HGE + AD +L ATGRAPNT+ L L A GV V+ GA+
Sbjct: 327 VLEHTQASQVAHVDGEFVLTTGHGE-LRADKLLVATGRAPNTRSLALDAAGVTVNAQGAI 385
Query: 319 KVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCI 378
+D+ RT+VP I+A GD T++ VA GT A + GG D +P VF
Sbjct: 386 VIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGD-AALDLTAMPAVVFTD 444
Query: 379 PPLSVVGLSEEQAIEQG-KGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGAS 437
P ++ VG SE +A G + D T P ++ + +KLV++ + +++G
Sbjct: 445 PQVATVGYSEAEAHHDGIETDSRTLTLDNVP--RALANFDTRGFIKLVIEEGSGRLIGVQ 502
Query: 438 MCGPEAPEIMQGIAVALK 455
PEA E++Q A+A++
Sbjct: 503 AVAPEAGELIQTAALAIR 520
|
Length = 561 |
| >gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (488), Expect = 2e-55
Identities = 141/447 (31%), Positives = 205/447 (45%), Gaps = 22/447 (4%)
Query: 12 SQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTC 71
+ Q H + +IG+GS AA +A GA+V I E ++VIGG C
Sbjct: 9 CMTRSKLQLH----VAIIGSGSAAFAAAIKAAEHGARVTIIE------GADVIGG---CC 55
Query: 72 VIRGCVPKKILVYGASFGGELEDARSYGWEVHE-KIDFDWKKLLQKKTDEILRLNGIYKR 130
V GCVP KIL+ A + G E ID Q+ E LR + Y+
Sbjct: 56 VNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRGLLLHQQQARVEELR-HAKYQS 114
Query: 131 LL-SNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG--QEL 187
+L N + L +G + N + V DG + +A LIATGS PIPG
Sbjct: 115 ILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTP 174
Query: 188 AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAV 247
TS EAL +ELP V+G +A E A + +GS V +L R L L D +
Sbjct: 175 YWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL-LFREDPLLGET 233
Query: 248 VARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKA 307
+ E GI + T + + G + T HGE + A+ +L +TGR NT LNL+A
Sbjct: 234 LTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGE-LRAEKLLISTGRHANTHDLNLEA 292
Query: 308 VGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPD 367
VGV D +GA+ V+ T+ P I+A GD ++ VA G+ + GG D
Sbjct: 293 VGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGN-ATLD 351
Query: 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVD 427
+P +F P ++ VGLSE +A G I + N R ++ + +KLV +
Sbjct: 352 LSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVPR-ALANFETDGFIKLVAE 410
Query: 428 AETEKVLGASMCGPEAPEIMQGIAVAL 454
T K++GA + E E++Q A+A+
Sbjct: 411 EGTRKLIGAQILAHEGGELIQSAALAI 437
|
Length = 479 |
| >gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-53
Identities = 143/476 (30%), Positives = 235/476 (49%), Gaps = 54/476 (11%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+D+ V+GAG GG AA +A G K + E + GG C+ GC+P K L+
Sbjct: 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW----------GGVCLNVGCIPSKALL 54
Query: 84 YGASFGGEL-----EDARSYGWEVHEKIDFDWKKLLQ---KKTDEILRLNGIYKRLLSNA 135
A EL ++A+++G + ++ FD+ K + ++ G++ L+
Sbjct: 55 RNA----ELAHIFTKEAKTFG--ISGEVTFDYGAAFDRSRKVAEGRVK--GVH-FLMKKN 105
Query: 136 GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA---ITSD 192
+ G G N +EV DG + + + +IATGS + +PG L+ +T +
Sbjct: 106 KITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRL--LPGTSLSENVVTYE 163
Query: 193 EALSLEELPKRAVVLGGGYIAVEFASIWRGMG---STVDLLFRKELPLRGFDDEMRAVVA 249
E + ELPK V+ G G I +EFA + + G + V+ L R LP D E+ +A
Sbjct: 164 EQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA-LPNE--DAEVSKEIA 220
Query: 250 RNLEGRGINLHPRTTIKELIKSEEGVKV-ITDHG---EEIVADVVLFATGRAPNTKRLNL 305
+ + G+ + T ++ + + V V ++ +E+ AD VL A G AP + L
Sbjct: 221 KQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGL 280
Query: 306 KAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCK 365
+ GV + GA+ +D+ RTNVP I+A+GDVT ++ L VA +G A+T+ G + +
Sbjct: 281 EKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLE 340
Query: 366 -PDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGR-----QEK 419
DYR +P A FC P ++ GL+EEQA E+G D+ V F T +G+
Sbjct: 341 LGDYRMMPRATFCQPQVASFGLTEEQAREEGY-DVKVAKFPF-----TANGKAHGLGDPT 394
Query: 420 TVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
+KLV DA+ ++LG + GP+ E++ + +A K T + V HP+ +E
Sbjct: 395 GFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSE 450
|
Length = 466 |
| >gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 1e-53
Identities = 140/467 (29%), Positives = 227/467 (48%), Gaps = 35/467 (7%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+D+ +IG G GG AA + G KV E +GGTC+ GC+P K L+
Sbjct: 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR---------STLGGTCLNVGCMPSKALL 54
Query: 84 -----YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVK 138
Y A+ GGE G EV ++ +++++K + + L + L V
Sbjct: 55 HASELYEAASGGEFA---HLGIEVKPTLNL--AQMMKQKDESVEALTKGVEFLFRKNKVD 109
Query: 139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQEL----AITSDEA 194
+G G++ G +V V DG++ AK I+IATGS + P+PG + I S A
Sbjct: 110 WIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGS--EPTPLPGVTIDNQRIIDSTGA 167
Query: 195 LSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEG 254
LSL E+PK VV+G G I +E S+WR +G+ V ++ + G D E + + L
Sbjct: 168 LSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTK 227
Query: 255 RGINLHPRTTIKELIKSEEGVKVITD-----HGEEIVADVVLFATGRAPNTKRLNLKAVG 309
+G+ + + +GV + + E + AD VL A GR P T+ L L+ VG
Sbjct: 228 QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVG 287
Query: 310 VEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYR 369
+E D+ G + +++ RT+VP +W +GDVT+ L A E + + G+ + +Y
Sbjct: 288 LETDKRGMLA-NDHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERI-AGKAGEVNYG 345
Query: 370 DVPCAVFCIPPLSVVGLSEEQAIEQGKG-DILVFTSSFNPMRNTISGRQEKTVMKLVVDA 428
+P ++ P ++ VG +EEQ +G+ + F + N R I+ E K++ DA
Sbjct: 346 LIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANS-RAKINHETEGFA-KILADA 403
Query: 429 ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
T++VLG M GP E++ VA++ A+ T HP+ +E
Sbjct: 404 RTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSE 450
|
Length = 466 |
| >gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (462), Expect = 6e-52
Identities = 134/467 (28%), Positives = 228/467 (48%), Gaps = 34/467 (7%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+ +IG G G A A G +V + E + GGTC+ GC+P K LV
Sbjct: 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIE--------QSNAMYGGTCINIGCIPTKTLV 55
Query: 84 YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL-NGIYKRLLSNAGVKLYEG 142
+ DA+ + D+ + +Q+K + + L N + L + + +G
Sbjct: 56 H---------DAQQHT---------DFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDG 97
Query: 143 EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA---ITSDEALSLEE 199
+ + + + + V + +G + K I I TG++ PIPG S L+L+E
Sbjct: 98 QAEFINNHSLRVHRPEGNLEIHGEK-IFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKE 156
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259
LP +LGGGYI VEFAS++ GS V +L L L D ++ +A L +G+++
Sbjct: 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDI 216
Query: 260 HPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319
++ + E V+V ++H + V D +L A+GR P T L+ + G+ V++ GA+
Sbjct: 217 ILNAHVERISHHENQVQVHSEHAQLAV-DALLIASGRQPATASLHPENAGIAVNERGAIV 275
Query: 320 VDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG-GQPCKPDYRDVPCAVFCI 378
VD+ T +IWA+GDVT + T ++L + + G G+ D ++VP +VF
Sbjct: 276 VDKYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMT 335
Query: 379 PPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASM 438
PPLS VG++EEQA E G DI V T + + V+K +VD +T+++LGAS+
Sbjct: 336 PPLSRVGMTEEQARESG-ADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASL 394
Query: 439 CGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTR 485
++ E++ + + + G + + HPS +E + S+ +
Sbjct: 395 LCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSLVK 441
|
Length = 441 |
| >gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 2e-50
Identities = 140/463 (30%), Positives = 218/463 (47%), Gaps = 39/463 (8%)
Query: 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGAS 87
+IG G GG AA +A GA V + E G+GG V+ CVP K L+ A
Sbjct: 6 IIGGGPGGYEAALVAAQLGADVTVIER----------DGLGGAAVLTDCVPSKTLIATAE 55
Query: 88 FGGELEDARSYGWEVHE----KIDFDW-----KKLLQKKTDEILRLNGIYKRLLSNAGVK 138
EL A G + ++D K L ++ +I + L GV+
Sbjct: 56 VRTELRRAAELGIRFIDDGEARVDLPAVNARVKALAAAQSADI-------RARLEREGVR 108
Query: 139 LYEGEGKI----VGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSD 192
+ G G++ +GP+ V+VT DG + + A +LIATG+ + P P E +T
Sbjct: 109 VIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDGERILTWR 168
Query: 193 EALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNL 252
+ L+ELP+ +V+G G EFAS + +G V L+ ++ L G D + V+
Sbjct: 169 QLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVF 228
Query: 253 EGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEV 312
RG+ + R+ + + ++ +GV V G + L A G PNT L L+ GVE+
Sbjct: 229 ARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVEL 288
Query: 313 DQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKP-DYRDV 371
+G + VD SRT+VP I+A GD T + L VA M+G A G+ P + V
Sbjct: 289 TPSGHITVDRVSRTSVPGIYAAGDCTGVLPLASVAAMQGR-IAMYHALGEAVSPLRLKTV 347
Query: 372 PCAVFCIPPLSVVGLSEEQAIEQGK--GDILVFTSSFNPMRNTISGRQEKTVMKLVVDAE 429
VF P ++ VG+S + AI+ G+ ++ + NP R +SG ++ V KL
Sbjct: 348 ASNVFTRPEIATVGVS-QAAIDSGEVPARTVMLPLATNP-RAKMSGLRDGFV-KLFCRPG 404
Query: 430 TEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPS 472
T V+G + P A E++ IA+A++ T T ++PS
Sbjct: 405 TGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPS 447
|
Length = 466 |
| >gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 2e-48
Identities = 127/436 (29%), Positives = 209/436 (47%), Gaps = 19/436 (4%)
Query: 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGAS 87
VIG+G + AA + GA+V + E G +GGTCV GCVP KI++ A
Sbjct: 11 VIGSGGSAMAAALKATERGARVTLIER----------GTIGGTCVNIGCVPSKIMIRAAH 60
Query: 88 FGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL-NGIYKRLL-SNAGVKLYEGEGK 145
++ + D LL ++ + L Y+ +L NA + + GE +
Sbjct: 61 IAHLRRESPFDDGLSAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEAR 120
Query: 146 IVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG--QELAITSDEALSLEELPKR 203
V + VT DG + + I TG+R P+PG + +TS AL L+ +P+R
Sbjct: 121 FVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAETPYLTSTSALELDHIPER 180
Query: 204 AVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRT 263
+V+G +A+E A + +GS V +L R + L D + + GI + +T
Sbjct: 181 LLVIGASVVALELAQAFARLGSRVTVLARSRV-LSQEDPAVGEAIEAAFRREGIEVLKQT 239
Query: 264 TIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDEN 323
E+ + + T+ G + A+ +L ATGR PNT+ LNL+++GVE ++ GA+++DE+
Sbjct: 240 QASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETER-GAIRIDEH 297
Query: 324 SRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSV 383
+T V I+A GD T++ VA G+ A + GG D +P +F P ++
Sbjct: 298 LQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGD-ASLDLSAMPEVIFTDPQVAT 356
Query: 384 VGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEA 443
VGLSE +A QG D T + + +K+V + + ++LG + EA
Sbjct: 357 VGLSEAEAQAQGY-DTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEA 415
Query: 444 PEIMQGIAVALKCGAT 459
E++Q +AL+ T
Sbjct: 416 GELIQTAVMALRARMT 431
|
Length = 468 |
| >gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 3e-39
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 371 VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAET 430
VP VF P ++ VGL+EE+A ++G G++ V F ++ + K +KLV DAET
Sbjct: 1 VPSVVFTDPEIASVGLTEEEAKKKG-GEVKVGKFPFKANGRALAYGETKGFVKLVADAET 59
Query: 431 EKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481
++LGA + GP A E++Q A+A+K GAT +T+ HP+ +E V
Sbjct: 60 GRILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHAHPTLSEALVEAA 110
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. Length = 110 |
| >gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (327), Expect = 4e-32
Identities = 126/558 (22%), Positives = 204/558 (36%), Gaps = 111/558 (19%)
Query: 9 GELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGG-- 66
+ + EE +D+ +IG G GG AA + G KV I G
Sbjct: 107 SQSMNFSDEE-----YDVGIIGCGVGGHAAAINAMERGLKVII-----------FTGDDD 150
Query: 67 -VGGTCVIRGCVPKKILVYGA--------------------SFGGELEDARSYGWEVHEK 105
+GGTCV GC+P K L+Y +F D V +
Sbjct: 151 SIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKNGKNDPVERNQLVADT 210
Query: 106 IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG-PNEVEVTQLDGTKLS- 163
+ D KL + I +L G + L + +++ + ++ S
Sbjct: 211 VQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSG 270
Query: 164 --YSAKHILIATGSRAQRAPIPG-----QELAITSDEALSLEELPKRAVVLGGGYIAVEF 216
+ K+I+IATGS IP Q+ TSD A+ LE L ++G G I +EF
Sbjct: 271 KEFKVKNIIIATGSTPN---IPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEF 327
Query: 217 ASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARN-LEGRGINLHPRTTIKELIKSEEGV 275
I+ +GS V L D ++ R L+ + + +H T I+ + +
Sbjct: 328 MDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQ 387
Query: 276 KVITDHGE-----------------EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318
VI H E E D L ATGR PNT L L + +++ + G V
Sbjct: 388 PVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKR-GFV 446
Query: 319 KVDENSRTN------VPSIWAVGDVTNRMNLTPVALM------------EGTCFAKTVFG 360
VDE+ R +I+ +GD + L A V
Sbjct: 447 SVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVEN 506
Query: 361 GQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSF-------------- 406
Y+++P + P L+ +GL+E++A E D + SF
Sbjct: 507 WASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNIS 566
Query: 407 ---NPMRNTISGRQEKTV------MKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCG 457
N N+ + + TV +K+V +T+++LG + G A ++ +A+
Sbjct: 567 FPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLK 626
Query: 458 ATKAQFDSTVGIHPSSAE 475
+ V HP+ +E
Sbjct: 627 LSVKDLAHMVHSHPTISE 644
|
Length = 659 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 90/349 (25%), Positives = 152/349 (43%), Gaps = 33/349 (9%)
Query: 159 GTKLSY--SAKHILIATGSRAQRAPIPGQELAIT-----SDEALSLEEL-----PKRAVV 206
T +Y S +++++ G+ I G L I ++ ++++ + V+
Sbjct: 83 KTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVI 142
Query: 207 LGGGYIAVEFASIWRGMGSTVDLLFR-KELPLRGFDDEMRAVVARNLEGRGINLHPRTTI 265
+GGGYI +E A R G V L+ R + + + FD+EM +V L+ INL +
Sbjct: 143 IGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEV 202
Query: 266 KELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSR 325
+ EE VKV T G AD+V+ ATG PN++ K G+++ +TGA+ V+E +
Sbjct: 203 DSIE-GEERVKVFTS-GGVYQADMVILATGIKPNSELA--KDSGLKLGETGAIWVNEKFQ 258
Query: 326 TNVPSIWAVGDVTNRMN----------LTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAV 375
T+VP+I+A GDV N L A G + + G
Sbjct: 259 TSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITK 318
Query: 376 FCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLG 435
F ++ G++E +A + VF + N G +KL+ + +T ++LG
Sbjct: 319 FFDLTIASTGVTENEAKKLNIDYKTVFVKA-KTHANYYPG-NSPLHLKLIYEKDTRRILG 376
Query: 436 ASMCGPEAPEI-MQGIAVALKCGAT-KAQFDSTVGIHP--SSAEEFVTM 480
A G E + + +A A+ G T K F + P S + + M
Sbjct: 377 AQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVWDPLNM 425
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 6e-26
Identities = 96/326 (29%), Positives = 150/326 (46%), Gaps = 47/326 (14%)
Query: 169 ILIATGSRAQRAPIPGQELAITS-----DEALSLEEL-----PKRAVVLGGGYIAVEFAS 218
++IATG+R PI L ++ L+L+EL K V++G G+I +E
Sbjct: 107 LMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVE 166
Query: 219 IWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKV 277
+ +G V ++ ++ L FD E+ V+ L G+ LH +K LI ++ V
Sbjct: 167 AAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGV 226
Query: 278 ITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD- 336
+TD G E ADVV+ ATG PNT+ L+ G++ + GA+ VDE T++ +I+A GD
Sbjct: 227 VTDKG-EYEADVVIVATGVKPNTEF--LEDTGLKTLKNGAIIVDEYGETSIENIYAAGDC 283
Query: 337 ------VTNRMNLTPVAL-------MEGTCFA--KTVFGGQPCKPDYRDVPCAVFCIPPL 381
V+N+ P+A M G A F G CI L
Sbjct: 284 ATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGT----------LGSACIKVL 333
Query: 382 SV----VGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGAS 437
+ GL+EE+A + G VF N N G QE +KL+ +A+T+ +LG
Sbjct: 334 DLEAARTGLTEEEAKKLGIDYKTVFIKDKN-HTNYYPG-QEDLYVKLIYEADTKVILGGQ 391
Query: 438 MCGPE-APEIMQGIAVALKCGATKAQ 462
+ G + A + +AVA+ T +
Sbjct: 392 IIGKKGAVLRIDALAVAIYAKLTTQE 417
|
Length = 444 |
| >gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 30/198 (15%)
Query: 159 GTKLSYSAKHILIATGSRAQRAPIPGQELAI--------TSDEALSLEELPKRAVVLGGG 210
G Y+AK ++IATG+ A++ IPG++ T D K V+GGG
Sbjct: 93 GDGKEYTAKAVIIATGASARKLGIPGEDEFWGRGVSYCATCDGPFFKN---KEVAVVGGG 149
Query: 211 YIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA---VVARNLEGRGINLHPRTTIKE 267
A+E A + V L+ R+ D+ RA ++ R + I +T+KE
Sbjct: 150 DSAIEEALYLTRIAKKVTLVHRR--------DKFRAEKILLDRLKKNPKIEFLWNSTVKE 201
Query: 268 LIKSE--EGVK---VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDE 322
++ EGVK +T EE+ D V A G PNT+ L +E+D+ G + DE
Sbjct: 202 IVGDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHEPNTELL---KGLLELDENGYIVTDE 258
Query: 323 NSRTNVPSIWAVGDVTNR 340
RT+VP ++A GDV ++
Sbjct: 259 GMRTSVPGVFAAGDVRDK 276
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 1e-18
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 12/181 (6%)
Query: 170 LIATGSRAQRAPIPGQELAITS---DEALSLE---ELPKRAVVLGGGYIAVEFASIWRGM 223
++ATG+R + PI E +T ++A +L+ E PK VV+G G I +E A
Sbjct: 99 VLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKR 158
Query: 224 GSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSE---EGVKVIT 279
G V L+ + + D E+ +A LE G+ L T + + +V+
Sbjct: 159 GKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVG 218
Query: 280 DHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRT-NVPSIWAVGDVT 338
GEEI AD+V+ G PN L A+ GAV VDE T P ++A GDV
Sbjct: 219 IDGEEIKADLVIIGPGERPNVV-LANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVA 277
Query: 339 N 339
Sbjct: 278 E 278
|
Length = 415 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-18
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPR 262
R VV+GGGYI +EFAS +GS V ++ R++ LRGFD+E+ ++ LE GI +
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60
Query: 263 TTIKELIKSEEGVKVITDHGEE 284
TT++E+ + +GV V G+
Sbjct: 61 TTVEEIEGNGDGVVVKLKTGDG 82
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 4e-18
Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 23/190 (12%)
Query: 164 YSAKHILIATGSRAQRAPIPG-QELA-------ITSDEALSLEELPKRAVVLGGGYIAVE 215
Y AK ++IATG+ A++ +PG +E T D K VV+GGG AVE
Sbjct: 102 YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG----FFKGKDVVVIGGGDSAVE 157
Query: 216 FASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELI-KSEEG 274
A + V L+ R++ R ++ + + +N I + T +KE++ EG
Sbjct: 158 EALYLSKIAKKVTLVHRRDE-FRA-EEILVERLKKN---VKIEVLTNTVVKEILGDDVEG 212
Query: 275 VKVITDHGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIW 332
V + GE E+ D V A G PNT L +D+ G + VDE T+VP I+
Sbjct: 213 VVLKNVKGEEKELPVDGVFIAIGHLPNT---ELLKGLGVLDENGYIVVDEEMETSVPGIF 269
Query: 333 AVGDVTNRMN 342
A GDV ++
Sbjct: 270 AAGDVADKNG 279
|
Length = 305 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-16
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 26/217 (11%)
Query: 136 GVKLYEGEGKI-VGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA-----I 189
G+ LY GE I + VT G +SY ++IATGS PIPG +L
Sbjct: 73 GITLYTGEKVIQIDRANKVVTTDAGRTVSYD--KLIIATGSYPFILPIPGSDLPGVFVYR 130
Query: 190 TSDEALSLEELPK---RAVVLGGGYIAVEFAS--IWRGMGSTV----DLLFRKELPLRGF 240
T D+ ++ + + +AVV+GGG + +E A GM TV L ++L
Sbjct: 131 TIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQL----- 185
Query: 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300
D ++ R LE GI + +E++ ++ V G EI AD+V+ A G PN
Sbjct: 186 DRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPND 245
Query: 301 KRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337
+ K G+ V++ + V++ +T+ P I+AVG+
Sbjct: 246 EL--AKEAGLAVNR--GIVVNDYMQTSDPDIYAVGEC 278
|
Length = 793 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 7e-16
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 23/179 (12%)
Query: 171 IATGSRAQRAPIPGQELAITSDEALSLEE---------LPKRAVVLGGGYIAVEFASIWR 221
+ATG+ A PIPG+EL +T + S +E +R +V+GGG I E A
Sbjct: 105 LATGASAFVPPIPGRELMLTLN---SQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLC 161
Query: 222 GMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR----GINLHPRTTIKELIKSEEGVKV 277
G V L+ L M V+ L+ R G++L ++ ++ L K++ G++
Sbjct: 162 RAGKAVTLVDNAASLLASL---MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRA 218
Query: 278 ITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336
D G I D V+ A G PNT L +A G+ V++ + VD +T+ P I+A+GD
Sbjct: 219 TLDSGRSIEVDAVIAAAGLRPNTA-LARRA-GLAVNR--GIVVDSYLQTSAPDIYALGD 273
|
Length = 377 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 4e-15
Identities = 74/314 (23%), Positives = 121/314 (38%), Gaps = 69/314 (21%)
Query: 128 YKRLLSNAG-VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILI-ATGSRAQRAPIPG- 184
+ LL +G V+ +GE + + +VT D ++SY L+ A GS IPG
Sbjct: 63 LRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISY---DYLVVALGSETNYFGIPGA 119
Query: 185 -----------------QELAITSDEALSLEELPKRA--VVLGGGYIAVEFASIWRGMGS 225
+ L ++A E+ V++GGG VE A +
Sbjct: 120 AEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGE---LAE 176
Query: 226 TVDLLFRKELP----------------LRGFDDEMRAVVARNLEGRGINLHPRTTIKELI 269
+ L +K L F ++ R LE G+ + T + E+
Sbjct: 177 RLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEV- 235
Query: 270 KSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSR-TNV 328
+ +GV + D EEI AD V++A G + L G+E D+ G + V+ +
Sbjct: 236 -TPDGVTL-KDGEEEIPADTVVWAAGVRASP--LLKDLSGLETDRRGRLVVNPTLQVPGH 291
Query: 329 PSIWAVGDVTNRMNLTPV------ALMEGTCFAKTVFG---GQPCKP-DYRDVPCAVFCI 378
P I+A GD ++ PV A +G AK + G+P KP Y+D
Sbjct: 292 PDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKDK------- 344
Query: 379 PPLSVVGLSEEQAI 392
++ L + A+
Sbjct: 345 --GTLASLGDFSAV 356
|
Length = 405 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 58/228 (25%), Positives = 89/228 (39%), Gaps = 27/228 (11%)
Query: 129 KRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSY--------SAKHILIATGSRAQRA 180
+RL AG + E + P+ +V + LSY S + G+
Sbjct: 61 RRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAV 120
Query: 181 PI-PGQELA---ITSDEALSLEELPKRAVVLGGGYIAVEFA----SIWRGMGSTVD-LLF 231
P+ P + E+ KR V+GGG VE A G L
Sbjct: 121 PVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI 180
Query: 232 RKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVL 291
L GF ++R +V R L RGI +H + +I G + AD +L
Sbjct: 181 AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTR-GPDGA---LILADGRTLPADAIL 236
Query: 292 FATG-RAPNTKRLNLKAVGVEVDQTGAVKVDENSRT-NVPSIWAVGDV 337
+ATG RAP L G+ +D+ G ++VD ++ + P ++A GD
Sbjct: 237 WATGARAPPW----LAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDC 280
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 5e-13
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261
+A+V+G GYI++E G L+ R + + D +M + L+ R I
Sbjct: 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYR- 207
Query: 262 RTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD 321
+ E I + G +V G+ D+++ G PN+K + ++ +++D G + V+
Sbjct: 208 ---LNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFI--ESSNIKLDDKGFIPVN 262
Query: 322 ENSRTNVPSIWAVGDV 337
+ TNVP+I+A+GD+
Sbjct: 263 DKFETNVPNIYAIGDI 278
|
Length = 438 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 6e-13
Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 19/237 (8%)
Query: 112 KLLQKKTD-EILRLNGIYKRLLSNAGVKLYEGEGKI-VGPNEVEVTQLDGTKLSYSAKHI 169
+LQ + D + + LN K G+ LY GE I + ++ +V G LSY +
Sbjct: 45 SVLQGEADLDDITLNS--KDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDK--L 100
Query: 170 LIATGSRAQRAPIPGQEL-AITS-------DEALSLEELPKRAVVLGGGYIAVEFASIWR 221
++ATGS PIPG + + D +++ + K+A V+GGG + +E A +
Sbjct: 101 ILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQ 160
Query: 222 GMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD 280
+G V ++ L + D ++ R LE +G+ E++ + + ++
Sbjct: 161 NLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFK 220
Query: 281 HGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337
G + AD+++ A G PN + AV + + V+++ +T+ P I+AVG+
Sbjct: 221 DGSSLEADLIVMAAGIRPNDEL----AVSAGIKVNRGIIVNDSMQTSDPDIYAVGEC 273
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 52/214 (24%)
Query: 169 ILIATGS-RAQRAPIPGQEL-----------AITSDE--ALSLEELP----KRAVVLGGG 210
+LIATG+ ++++ IPG++L I + + L E++P K+ VV+G G
Sbjct: 122 VLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAG 181
Query: 211 YIAVEFASIWRGMGS-TVDLLFR---KELPLRGFDDEMRAVVARNLEGRGINLHPRTTIK 266
AV+ A +G+ V L +R E P L RG+ T
Sbjct: 182 LTAVDAALEAVLLGAEKVYLAYRRTINEAP-------AGKYEIERLIARGVEFLELVTPV 234
Query: 267 ELIKSEEGVK---------------------VITDHGEEIVADVVLFATGRAPNTKRLNL 305
+I E V+ I + AD V+FA G P T
Sbjct: 235 RII-GEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIP-TPPFAK 292
Query: 306 KAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN 339
+ +G+E+++ G + VDE T+ ++A GDV
Sbjct: 293 ECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVT 326
|
Length = 352 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 7e-12
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 28/208 (13%)
Query: 145 KIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQ-----ELAITSDEALSLEE 199
K +G + E+ +G + + IATG+ A+ P+ + +A L E
Sbjct: 82 KTLGRDTRELVLTNGESWHWD--QLFIATGAAARPLPLLDALGERCFTLRHAGDAARLRE 139
Query: 200 L---PKRAVVLGGGYIAVEFA--SIWRGMGSTV-----DLLFRKELPLRGFDDEMRAVVA 249
+ + V++G G I +E A + R TV ++ R P R ++
Sbjct: 140 VLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPV-----QRYLLQ 194
Query: 250 RNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVG 309
R+ + G+ + I+ ++ E+ V++ GE + ADVV++ G + N + A
Sbjct: 195 RHQQ-AGVRILLNNAIEHVVDGEK-VELTLQSGETLQADVVIYGIGISANDQL----ARE 248
Query: 310 VEVDQTGAVKVDENSRTNVPSIWAVGDV 337
+D + +DE RT P+I+A GDV
Sbjct: 249 ANLDTANGIVIDEACRTCDPAIFAGGDV 276
|
Length = 396 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 90/373 (24%), Positives = 142/373 (38%), Gaps = 71/373 (19%)
Query: 9 GELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVG 68
G ++P + TH + VIGAG G+ A A G V + E P GGV
Sbjct: 121 GIETEPEKAPSTHKK--VAVIGAGPAGLACASELAKAGHSVTVFEALHKP------GGVV 172
Query: 69 GTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIY 128
+ +PK+I+V E++ + G +++F L KT + L Y
Sbjct: 173 TYGIPEFRLPKEIVVT------EIKTLKKLGVTF--RMNF-----LVGKTATLEELFSQY 219
Query: 129 KRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILI-ATGSRAQRAPIPGQEL 187
+ G G K++ + +L G YSA L A +A P +
Sbjct: 220 DAVFIGTGA----GLPKLM---NIPGEELCGV---YSANDFLTRANLMKAYEFPHADTPV 269
Query: 188 AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAV 247
K VV+GGG AV+ A +G+ V L+R+ D R
Sbjct: 270 -----------YAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE----DMTARVE 314
Query: 248 VARNLEGRGINLHPRTTIKELIKSEEG----VKVI-TDHGEE-----------------I 285
+ E G+ H E+I EEG VK D E+ +
Sbjct: 315 EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKL 374
Query: 286 VADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTP 345
AD V+ A G N + + ++ + G + VDE+ RT++P ++A GD+
Sbjct: 375 EADAVIVAIGNGSN--PIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAATVI 432
Query: 346 VALMEGTCFAKTV 358
A+ +G AK++
Sbjct: 433 RAMGQGKRAAKSI 445
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 54/235 (22%), Positives = 87/235 (37%), Gaps = 59/235 (25%)
Query: 156 QLDGTKLSYSAKHILIATGS-RAQRAPIPGQEL-----------AITSDEALSLEELP-- 201
L+ Y A + +ATG+ + + IPG++ + + E
Sbjct: 201 TLEELLKEYDA--VFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTP 258
Query: 202 ----KRAVVLGGGYIAVEFA--SIWRGMGSTVDLLFRKELPLRGFDDEM-------RAVV 248
KR VV+GGG A++ A ++ G S DDE +
Sbjct: 259 PAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFY------REDRDDETNEWPTWAAQLE 312
Query: 249 ARNLEGRGINLHPRTTIKELIKSEEG----VKVI-TDHGEEIV----------------- 286
R+ G+ P K I +E G VK + GE +
Sbjct: 313 VRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTD 372
Query: 287 -ADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS-RTNVPSIWAVGDVTN 339
AD V+ A G + L G+++D+ G +KVDEN +T++P ++A GD
Sbjct: 373 AADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVR 427
|
Length = 457 |
| >gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 51/227 (22%)
Query: 137 VKLYEGEGKIVG-PNEVEVTQLDGTKLSYSAKHILIATG--SRAQRAPIPGQELAITSDE 193
++LYE K+ EVT K +Y AK++++ATG +PG
Sbjct: 87 IRLYEEVLKVKKTDGGFEVTT---EKGTYQAKNVIVATGYYDIPNLLNVPG--------- 134
Query: 194 ALSLEELPK--------------RAVVLGGGYIAVEFA-SIWRGMGSTVDLLFRKELPLR 238
E+LPK + VV+GG AV+ A ++R G+ V ++ R +
Sbjct: 135 ----EDLPKVSHYYKEAHPYFGQKVVVVGGSNSAVDAALELYRK-GAEVTMVHRGD---- 185
Query: 239 GFDDEMRAVVARNLEGR----GINLHPRTTIKELIKSEEGVKVITDHGE--EIVADVVLF 292
++ V ++E R I + + +KE+ +E+ V + T GE I D V
Sbjct: 186 EVSSSVKYWVRPDIENRIKEGSIKAYFNSRVKEI--TEDSVTLETPDGEVHTIPNDFVFA 243
Query: 293 ATGRAPNTKRLNLKAVGVEVDQ-TGAVKVDENS-RTNVPSIWAVGDV 337
TG P+ + L+++GVE+D+ TG + + TNVP ++ G +
Sbjct: 244 LTGYRPDFEF--LESLGVELDEDTGIPVYNPETMETNVPGLYLAGVI 288
|
Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316 |
| >gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 6e-08
Identities = 83/336 (24%), Positives = 133/336 (39%), Gaps = 80/336 (23%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+D+ V+G G G AA ++A G + + ++ + G V T I +
Sbjct: 213 YDVLVVGGGPAGAAAAIYAARKGLRTAM-------VAERIGGQVKDTVGIENLISVP-YT 264
Query: 84 YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE 143
G+ LE E ++ I L+ N K E E
Sbjct: 265 TGSQLAANLE--------------------------EHIKQYPI--DLMENQRAKKIETE 296
Query: 144 GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELP-- 201
++ VT G L AK +++ATG+R ++ +PG++ I A P
Sbjct: 297 DGLI-----VVTLESGEVLK--AKSVIVATGARWRKLGVPGEKEYIGKGVAYC----PHC 345
Query: 202 -------KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA--VVARNL 252
K V+GGG +E A G+ V +L F DE++A V+ L
Sbjct: 346 DGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVL--------EFADELKADKVLQDKL 397
Query: 253 EGRG---INLHPRTTIKELIKSEEGVKVI------TDHGEEIVADVVLFATGRAPNTKRL 303
+ I +TT E++ + V I + +++ D V G PNT+ L
Sbjct: 398 KSLPNVDILTSAQTT--EIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL 455
Query: 304 NLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN 339
K VE+++ G + +DE RT+VP I+A GDVT
Sbjct: 456 --KDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTT 488
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515 |
| >gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 88/341 (25%), Positives = 127/341 (37%), Gaps = 89/341 (26%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGG-VGGTCVIRG--CVPKK 80
+D+ V+G G G AA ++A G + G+ +E GG V T I VP+
Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLV--------AERFGGQVLDTMGIENFISVPE- 262
Query: 81 ILVYGASFGGELED-ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKL 139
G LE + Y D D L Q+ +
Sbjct: 263 --TEGPKLAAALEAHVKQY--------DVDVMNL-QRASKL----------------EPA 295
Query: 140 YEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEE 199
G I EV +G L A+ +++ATG+R + +PG++ A
Sbjct: 296 AVEGGLI------EVELANGAVLK--ARTVILATGARWRNMNVPGEDEYRNKGVAYC--- 344
Query: 200 LP---------KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA--VV 248
P KR V+GGG VE A G+ V LL F E++A V+
Sbjct: 345 -PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL--------EFAPELKADAVL 395
Query: 249 ARNLEGRGINLHPRTTIKELIKSE---EGVKVI------TDHGEEIVADV--VLFATGRA 297
L +L T I +E +G KV GEE ++ V G
Sbjct: 396 QDKLR----SLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLL 451
Query: 298 PNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338
PNT+ L VE+++ G + VD TNVP ++A GD T
Sbjct: 452 PNTEWLKGA---VELNRRGEIIVDARGETNVPGVFAAGDCT 489
|
Length = 520 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 38/167 (22%)
Query: 205 VVLGGGYIAVEFASIWRGMGSTVDLLFRKELP---------------------LRGFDDE 243
VV+GGG VEFA+ + FR ++ L FD
Sbjct: 177 VVVGGGPTGVEFAA-------ELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQA 229
Query: 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRL 303
+R R L G+++ +T +KE++ E V+ GE I +V+++TG P
Sbjct: 230 LRKYGQRRLRRLGVDIRTKTAVKEVLDKE----VVLKDGEVIPTGLVVWSTGVGPGPLTK 285
Query: 304 NLKAVGVEVDQTGAVKVDENSRT-NVPSIWAVGDVT--NRMNLTPVA 347
LK V+ G + VD++ R +P+++A+GD L +A
Sbjct: 286 QLK---VDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLA 329
|
Length = 424 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 4e-06
Identities = 85/349 (24%), Positives = 142/349 (40%), Gaps = 102/349 (29%)
Query: 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYG-A 86
VIGAG G+ AA A G V I E + + GG+ L YG
Sbjct: 145 VIGAGPAGLTAAHRLARKGYDVTIFE------ARDKAGGL--------------LRYGIP 184
Query: 87 SFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKI 146
F L K ++ ++ + +L+L GV++
Sbjct: 185 EF--RLP-----------------KDIVDREVERLLKL-----------GVEIRTN--TE 212
Query: 147 VGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA-PIPGQEL-----AI----TSDEALS 196
VG + +T LD + Y A + I TG+ R IPG+ L A+ ++A++
Sbjct: 213 VGRD---IT-LDELRAGYDA--VFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVA 266
Query: 197 LEELP--KRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKELPLRGFDDEMRAVVA--RN 251
+LP KR VV+GGG A++ A + +G+ V +++R RG +EM A +
Sbjct: 267 DYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYR-----RGR-EEMPASEEEVEH 320
Query: 252 LEGRGINLHPRTTIKELIKSEEGVKVIT------------------DHGEEIV--ADVVL 291
+ G+ E++ E V + G E AD+V+
Sbjct: 321 AKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVI 380
Query: 292 FATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS-RTNVPSIWAVGDVTN 339
A G+ PN L+ G+E+++ G + D+ + RT++P ++A GD+
Sbjct: 381 KAIGQTPNPLILST-TPGLELNRWGTIIADDETGRTSLPGVFAGGDIVT 428
|
Length = 457 |
| >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 16/213 (7%)
Query: 136 GVKLYEGEGKI-VGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQE-----LAI 189
G+K+ GE I + E + G + Y +++ATGS PI G E +
Sbjct: 73 GIKVLVGERAITINRQEKVIHSSAGRTVFYDK--LIMATGSYPWIPPIKGSETQDCFVYR 130
Query: 190 TSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMR 245
T ++ ++E KR V+GGG + +E A + +G ++ F L D
Sbjct: 131 TIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGG 190
Query: 246 AVVARNLEGRGINLHPRTTIKELIKS-EEGVKVIT-DHGEEIVADVVLFATGRAPNTKRL 303
+ R +E G+ +H E+++ E K + G E+ D ++F+TG P K
Sbjct: 191 EQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKL- 249
Query: 304 NLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336
G+ V G + ++++ +T+ P I+A+G+
Sbjct: 250 -ATQCGLAVAPRGGIVINDSCQTSDPDIYAIGE 281
|
Length = 847 |
| >gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 33/222 (14%)
Query: 156 QLDGTKLSYSAKHILIATGSRAQRAPIPGQEL-------AITSDEALSLEELPKRAVVLG 208
+L G Y+ ++IATG+ A+ +P +E A + + ++ V+G
Sbjct: 96 RLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRN--QKVAVIG 153
Query: 209 GGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVAR---NLEGRGINLHPRTTI 265
GG AVE A + S V L+ R++ GF E + ++ R +E I LH T+
Sbjct: 154 GGNTAVEEALYLSNIASEVHLIHRRD----GFRAE-KILIKRLMDKVENGNIILHTNRTL 208
Query: 266 KELIKSEEGVKVI-------TDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318
+E+ + GV + +D+ E + + A G +PNT G + G +
Sbjct: 209 EEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE----GQLELENGYI 264
Query: 319 KVDEN-----SRTNVPSIWAVGDVTNRMNLTPVALMEGTCFA 355
KV ++T++P ++A GDV + + + C A
Sbjct: 265 KVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMA 306
|
Length = 321 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 48/227 (21%)
Query: 144 GKIVGPNEVEVTQLDGTKLSYSAKHILIATG-SRAQRAPIPGQEL-----AITSDEALSL 197
G VG ++ + QL+G + A + +A G +R PIPG++ A+ A+
Sbjct: 207 GVRVG-EDITLEQLEG---EFDA--VFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGE 260
Query: 198 EELP---KRAVVLGGGYIAVEFASIWRGMG-STVDLLFRK---ELPLRGFDDEMRAVVAR 250
E P KR VV+GGG A++ A R +G V +++R+ ++P D+E+ +
Sbjct: 261 GEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMP--AHDEEIEEALR- 317
Query: 251 NLEGRGINLHPRTTIKELIKSEEGV----------KVITDHG---------EEIVADVVL 291
G+ ++ T E+ E G + + G E + AD+V+
Sbjct: 318 ----EGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVV 373
Query: 292 FATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSR-TNVPSIWAVGDV 337
A G+ ++ L GVEV G V+VD N T P ++A GD+
Sbjct: 374 LAIGQDIDSAGLE-SVPGVEVG-RGVVQVDPNFMMTGRPGVFAGGDM 418
|
Length = 564 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 273 EGVKVI-TDHGE-----------EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320
GVKV+ T+ GE + AD+VL A G L L GVE+D+ G V
Sbjct: 363 TGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL-LAQFGVELDERGRVAA 421
Query: 321 DENS-RTNVPSIWAVGD 336
+N+ +T+ P ++A GD
Sbjct: 422 PDNAYQTSNPKVFAAGD 438
|
Length = 471 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 277 VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336
V T + AD V+ A G +T+ L KA G+ +D+ G VD N T++ +++ +GD
Sbjct: 758 VETGETVTLEADTVITAIGEQVDTELL--KANGIPLDKKGWPVVDANGETSLTNVYMIGD 815
Query: 337 V 337
V
Sbjct: 816 V 816
|
Length = 1019 |
| >gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 47/176 (26%)
Query: 199 ELPKRAVVLGGGYIAVEFASIWRGM-------GSTVDLLFRKELPLRGFDDEMRAVVARN 251
++P+ VV+GGG +A++ A R M V++ K L +EM A +
Sbjct: 416 KIPRSLVVIGGGNVAMDIA---RSMARLQKMEYGEVNV---KVTSLERTFEEMPADMEEI 469
Query: 252 LEGR--GINLHPRTTIKELIKSEEGVKVIT------------------DHGEEIV--ADV 289
EG G+ ++P E++ + VK + D ++I+ AD+
Sbjct: 470 EEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADM 529
Query: 290 VLFATGRAPNTKRL------NLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN 339
V+ A G+AP+ L L+ V G + +E +T++P ++A GD+ +
Sbjct: 530 VVEAIGQAPDYSYLPEELKSKLEFVR------GRILTNEYGQTSIPWLFAGGDIVH 579
|
Length = 604 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 31/217 (14%)
Query: 200 LPKRAVVLGGGYIAVEFA-SIWRGMG-STVDLLFR---KELPLRGFDDEMRAVVARNLEG 254
L K VV+GGG A++ A + R G V +++R + +P +E+ + ++
Sbjct: 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMP--ASREELEEALEDGVDF 722
Query: 255 RGINLHPRTTIKELI--------KSEEGVK--VITDHGEEIVADVVLFATGRAPNTKRLN 304
+ + L G + V T ++ AD V+ A G +T L
Sbjct: 723 KELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQ 782
Query: 305 LKAVGVEVDQTGAVKVDENSR-TNVPSIWAVGDVTNRMNLTPV-ALMEGTCFAKTVFGGQ 362
G+ +D+ G V++ + TN+ +++ +GD NR T V A+ +G A + +
Sbjct: 783 --KNGIPLDEYGWPVVNQATGETNITNVFVIGDA-NRGPATIVEAIADGRKAANAILSRE 839
Query: 363 PCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDI 399
D V P V L+E + Q KG +
Sbjct: 840 GLNSDVDKV------FPINEEVRLAE---VYQKKGIL 867
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 49/216 (22%)
Query: 157 LDGTKLSYSAKHILIATG-SRAQRAPIPGQELA-----------ITSDEALSLEELPKRA 204
L+ + + A +L+A G +A + IPG+EL + AL K+
Sbjct: 272 LEELQKEFDA--VLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPG---KKV 326
Query: 205 VVLGGGYIAVEFASIWRGMG-STVDLLFRKELPLRGFDDEMRAVVARNLE--GRGINLHP 261
VV+GGG A++ A +G +V +L+R+ +EM A A E G++L
Sbjct: 327 VVIGGGNTAIDAARTALRLGAESVTILYRRTR------EEMPANRAEIEEALAEGVSLRE 380
Query: 262 RTTIKELIKSEEGVKVIT---DHGE-----------------EIVADVVLFATGRAPNTK 301
+ +SE G+++ GE + AD V+ A G+ +
Sbjct: 381 LAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVD-- 438
Query: 302 RLNLKAVGVEVDQTGAVKVD-ENSRTNVPSIWAVGD 336
+A G+ + G VKVD E +T+V ++A GD
Sbjct: 439 PPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGD 474
|
Length = 652 |
| >gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGG 66
FD+ VIGAG+ G+ AA F+A G KV + E +E +GG
Sbjct: 17 FDVIVIGAGAAGMSAALFAAIAGLKVLLVE------RTEYVGG 53
|
Length = 578 |
| >gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 89/341 (26%), Positives = 132/341 (38%), Gaps = 90/341 (26%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGG-VGGTCVIRG--CVPKK 80
+D+ V+G G G AA ++A G + GI +E GG V T I VP+
Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIV--------AERFGGQVLDTMGIENFISVPE- 262
Query: 81 ILVYGASFGGELED-ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKL 139
G LE+ + Y ++ LQ+ KL
Sbjct: 263 --TEGPKLAAALEEHVKEYDVDIMN---------LQR-------------------ASKL 292
Query: 140 YEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEE 199
G I EV +G L AK +++ATG+R + +PG++ A
Sbjct: 293 EPAAGLI------EVELANGAVLK--AKTVILATGARWRNMNVPGEDEYRNKGVAYC--- 341
Query: 200 LP---------KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA--VV 248
P KR V+GGG VE A G+ V +L E F E++A V+
Sbjct: 342 -PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVL---E-----FAPELKADQVL 392
Query: 249 ARNLEGRG---INLHPRTTIKELIKSEEGVKVIT----DHGEEIVADV--VLFATGRAPN 299
L I + +TT E+ + V +T GEE ++ V G PN
Sbjct: 393 QDKLRSLPNVTIITNAQTT--EVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPN 450
Query: 300 TKRLNLKAVG-VEVDQTGAVKVDENSRTNVPSIWAVGDVTN 339
T+ L G VE+++ G + VD T+VP ++A GD T
Sbjct: 451 TEWLK----GTVELNRRGEIIVDARGATSVPGVFAAGDCTT 487
|
Length = 517 |
| >gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 262 RTTIKELIKSEEGVKV---ITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318
RT E KS++G I E AD+VL A G +++ L GV+ + G +
Sbjct: 375 RTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFV-GPEQILLDDFGVKKTRRGNI 433
Query: 319 KV-DENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358
++ T++P ++A GD +L A+ EG A V
Sbjct: 434 SAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAV 474
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485 |
| >gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 65/203 (32%)
Query: 155 TQLDGTKLSYSAKHILIATGSRAQR----APIPGQELAITSDEALSLEEL--PKRAVVLG 208
T+ GT+ +Y A+++++ TG+ P+PG+ + +S+ L L KR V+G
Sbjct: 133 TRDTGTEQTYLARNLVLGTGTTPYIPECAKPLPGERVFHSSEYLLRKPRLLAGKRITVVG 192
Query: 209 GGYIAVEFASIW-----RGMGSTVDLLFRK-------------------------ELP-- 236
GG A E I+ R G + + R+ LP
Sbjct: 193 GGQSAAE---IFLDLLRRQPGYQLTWVTRRPNFFPLDDSPFTNEYFSPEYVDYFYALPEE 249
Query: 237 -----LRGFDDEMRAVV-------------ARNLEG-RGINLHPRTTIKELIKSEEGVKV 277
LR + + + G + L P ++ + +G ++
Sbjct: 250 KRDRLLREQKLTNYKGIDPDLIEEIYRRLYQQKVLGDPRVRLLPNREVQAAEATGDGYQL 309
Query: 278 ITDHG-----EEIVADVVLFATG 295
+G E + AD V+ ATG
Sbjct: 310 TLRNGEQGEEETLDADAVVLATG 332
|
This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335 |
| >gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 245 RAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295
A++ LE G+ + R+ + + K + G ++ T GE + D ++ ATG
Sbjct: 115 DALLKE-LEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164
|
Length = 408 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 34/162 (20%)
Query: 202 KRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELPLRGFDDEM--RAVVARNLEGRGIN 258
K+ V+GGG A++ A + +G+ V +++R+ ++EM R ++ + GI
Sbjct: 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS------EEEMPARLEEVKHAKEEGIE 624
Query: 259 LHPRTTIKELIKSEEG-VK---------------------VITDHGEEIVADVVLFATGR 296
E + E+G VK I + D+V+ + G
Sbjct: 625 FLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGV 684
Query: 297 APNTKRLNLKAV-GVEVDQTGAVKVDENSRTNVPSIWAVGDV 337
+PN L ++ G+E+++ G + VDE ++++P I+A GD+
Sbjct: 685 SPN--PLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDI 724
|
Length = 752 |
| >gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 49/215 (22%), Positives = 77/215 (35%), Gaps = 51/215 (23%)
Query: 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVY 84
D+ VIG G G AA +A GAKV +I T C P
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKV------------LLITHNTDTIAELSCNP------ 42
Query: 85 GASFGGE-----LEDARSYGWEVHEKIDFD---WKKLLQKK----------TDEILRLNG 126
S GG + + + G + + D ++ L K D L
Sbjct: 43 --SIGGIAKGHLVREIDALGGLMGKAADKTGIQFRMLNTSKGPAVRALRAQVDRDLYSKE 100
Query: 127 IYKRLLSNAGVKLYEGEGK--IVGPNEVE-VTQLDGTKLSYSAKHILIATGSRAQRAPIP 183
+ + L ++ + L +GE I +V+ V DG + Y AK +++ATG+
Sbjct: 101 MTETLENHPNLTLIQGEVTDLIPENGKVKGVVTEDGEE--YKAKAVVLATGTFLNGKIHI 158
Query: 184 GQEL-------AITSDE-ALSLEELPKRAVVLGGG 210
G + +TS+ + SL+EL G
Sbjct: 159 GLKCYPAGRLGELTSEGLSESLKELGFELGRFKTG 193
|
Length = 391 |
| >gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 252 LEGRGINLHPRTTIKELIKSEEGVK-VITDHGEEIVADVVLFATG 295
L+ G+ + RT + + K ++G V TD GEE+ AD ++ ATG
Sbjct: 118 LKELGVKIRTRTRVLSVEKDDDGRFRVDTDGGEELEADSLVLATG 162
|
Length = 405 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 498 | |||
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 100.0 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 100.0 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.98 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.98 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.98 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.98 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.97 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.97 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.97 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.97 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.96 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.96 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 99.96 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.96 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.96 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.95 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.95 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.95 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.95 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.95 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.93 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.92 | |
| PF02852 | 110 | Pyr_redox_dim: Pyridine nucleotide-disulphide oxid | 99.91 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.89 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.85 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.85 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.8 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.79 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.77 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.76 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.75 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.75 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.74 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 99.72 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.7 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.68 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.67 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.58 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.51 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.49 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.45 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 99.4 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 99.4 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 99.36 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 99.36 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 99.35 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.34 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 99.34 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.32 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 99.32 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 99.31 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 99.31 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.31 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 99.29 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 99.29 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 99.25 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 99.25 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 99.24 | |
| PLN02815 | 594 | L-aspartate oxidase | 99.24 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.23 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.22 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 99.22 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.21 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 99.21 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.21 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 99.2 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.19 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.19 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.17 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 99.17 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 99.16 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 99.16 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 99.15 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.15 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.14 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.14 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 99.14 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 99.13 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.07 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 99.05 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 99.0 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.97 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.95 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.94 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.93 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.91 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.88 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.88 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.87 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.86 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.86 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.85 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.84 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.83 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.82 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.82 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.81 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.81 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.8 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.79 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.79 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.78 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.78 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.77 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.76 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.75 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.74 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 98.74 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.73 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.71 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.7 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.7 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.7 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.69 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.69 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.68 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.68 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.67 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.67 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.67 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.67 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.67 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.66 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.66 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.66 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.66 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.66 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.65 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.65 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.65 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.64 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.64 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 98.63 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.62 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.62 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.61 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.61 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 98.6 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.58 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.57 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.57 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.56 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.55 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.55 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.55 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.53 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.52 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.52 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 98.51 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.51 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.5 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 98.49 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.48 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.48 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.47 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.47 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.47 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.46 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.46 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.44 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.44 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.43 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 98.43 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.43 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 98.41 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.41 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.4 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 98.4 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.4 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.4 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.38 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.38 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.37 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.37 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.37 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 98.36 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.36 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.36 | |
| PLN02985 | 514 | squalene monooxygenase | 98.36 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.35 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 98.34 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.34 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.33 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 98.33 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.33 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.33 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.33 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.33 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.32 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.31 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.3 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.29 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.29 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.29 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.24 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.22 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.21 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.2 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.19 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 98.18 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.17 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.17 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 98.16 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.16 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.15 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 98.15 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.12 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 98.12 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.11 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.1 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 98.09 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.09 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 98.08 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 98.07 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 98.07 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.06 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.06 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 98.06 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.05 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.05 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.05 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.04 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.03 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 98.02 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 98.01 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 98.0 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.0 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.0 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 97.99 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.99 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.98 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 97.97 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 97.97 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 97.97 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 97.96 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.95 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.94 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.94 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 97.94 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.93 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 97.93 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.93 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 97.93 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.93 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 97.92 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.92 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.92 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.91 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.91 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.91 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.91 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.91 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 97.88 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.88 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 97.87 | |
| PRK06116 | 450 | glutathione reductase; Validated | 97.87 | |
| PRK06370 | 463 | mercuric reductase; Validated | 97.87 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.87 | |
| PLN02507 | 499 | glutathione reductase | 97.86 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.86 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 97.86 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.85 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 97.85 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 97.84 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.84 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 97.84 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.84 | |
| PRK05675 | 570 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.84 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 97.82 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 97.82 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.81 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.81 | |
| PLN02568 | 539 | polyamine oxidase | 97.81 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.8 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.8 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.8 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.78 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 97.78 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.77 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.76 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 97.75 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.74 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 97.73 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 97.72 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.71 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 97.7 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.7 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.69 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 97.69 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.69 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 97.69 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.69 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 97.68 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.66 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 97.66 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.66 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 97.66 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 97.65 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 97.65 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.64 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.64 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 97.63 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.63 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.62 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.62 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.61 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.59 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 97.59 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 97.59 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 97.59 | |
| PLN02676 | 487 | polyamine oxidase | 97.59 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.59 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.59 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 97.58 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.56 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.56 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.53 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 97.52 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 97.52 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.51 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.49 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 97.48 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 97.48 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 97.48 | |
| PLN02546 | 558 | glutathione reductase | 97.48 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.47 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.46 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 97.44 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.44 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.43 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.42 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 97.41 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.41 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 97.4 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.4 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.37 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 97.36 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.35 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.35 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.34 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 97.33 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 97.33 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 97.3 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 97.29 | |
| TIGR01816 | 565 | sdhA_forward succinate dehydrogenase, flavoprotein | 97.28 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.27 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 97.27 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 97.26 | |
| PLN02612 | 567 | phytoene desaturase | 97.25 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 97.24 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.21 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 97.2 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 97.19 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.18 | |
| PLN03000 | 881 | amine oxidase | 97.13 | |
| PLN02976 | 1713 | amine oxidase | 97.09 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 97.02 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 97.0 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 96.98 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 96.98 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 96.97 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 96.91 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 96.91 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 96.86 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 96.8 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 96.78 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 96.76 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 96.72 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 96.68 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 96.66 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 96.66 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 96.59 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 96.57 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 96.55 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 96.53 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 96.52 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 96.51 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 96.41 | |
| PLN02785 | 587 | Protein HOTHEAD | 96.39 | |
| PLN02985 | 514 | squalene monooxygenase | 96.35 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 96.34 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 96.32 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 96.28 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 96.2 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 96.16 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 96.11 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 96.08 | |
| PRK07121 | 492 | hypothetical protein; Validated | 96.05 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 95.95 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 95.84 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 95.82 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 95.8 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.69 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 95.63 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.63 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 95.61 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 95.6 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 95.54 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.54 | |
| PF00996 | 438 | GDI: GDP dissociation inhibitor; InterPro: IPR0182 | 95.53 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 95.43 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 95.39 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 95.37 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 95.36 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 95.33 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 95.22 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.18 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.08 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.05 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 95.03 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.91 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.83 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 94.81 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 94.78 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 94.75 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.72 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.52 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 94.5 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 94.46 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 94.45 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 94.44 | |
| PRK05868 | 372 | hypothetical protein; Validated | 94.4 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 94.38 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.32 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 94.29 | |
| TIGR03197 | 381 | MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri | 94.25 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 94.2 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.15 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 94.14 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 94.07 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 94.05 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 94.02 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 94.01 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.98 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 93.91 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 93.87 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 93.85 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 93.75 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 93.7 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 93.66 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 93.64 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 93.43 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 93.42 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 93.38 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 93.37 |
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-87 Score=669.39 Aligned_cols=447 Identities=40% Similarity=0.610 Sum_probs=414.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCC-CccccccccCchhhHHHHHHhHhhHHHhhhh-c
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIG-GVGGTCVIRGCVPKKILVYGASFGGELEDAR-S 97 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~-~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~-~ 97 (498)
|+.+||+|||||||||..||.+|++.|.+|++|| +. .+||+|+|+||+|+|.|++.++....+.+.. .
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE----------~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~ 70 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVE----------KGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKE 70 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEe----------ecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccc
Confidence 3457999999999999999999999999999999 45 7999999999999999999999998888776 6
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 98 YGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
||+..... .+||.+++.+++...+.+......+++.++|+++.|++.+++++++.|... ..++++++++|||||++|
T Consensus 71 ~Gi~~~~~-~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~--~~~~~~a~~iiIATGS~p 147 (454)
T COG1249 71 YGISAEVP-KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE--DKETITADNIIIATGSRP 147 (454)
T ss_pred cceecCCC-CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC--CceEEEeCEEEEcCCCCC
Confidence 88877643 899999999999988888888888999999999999999999999999665 245899999999999999
Q ss_pred CCCCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhC
Q 042564 178 QRAPIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255 (498)
Q Consensus 178 ~~p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~ 255 (498)
..|++++.+. ++++++.+.+.++|++++|||||++|+|+|+.|+++|++||++++.+++++.+|+++++.+.+.|++.
T Consensus 148 ~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~ 227 (454)
T COG1249 148 RIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKG 227 (454)
T ss_pred cCCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhC
Confidence 9999888754 67888877777999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEcCccEEEEEEeCCeEEEEECCCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 256 GINLHPRTTIKELIKSEEGVKVITDHGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
|+.+++++.+++++..++++.+.+++|+ .+.+|.+++|+|++||++.|+|++.|++++++|+|.||+.++||+|||||
T Consensus 228 gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA 307 (454)
T COG1249 228 GVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYA 307 (454)
T ss_pred CeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEE
Confidence 9999999999999887776788887776 68899999999999999999999999999999999999888889999999
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccc
Q 042564 334 VGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTI 413 (498)
Q Consensus 334 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
+|||++.++++|.|.+||++|++|+++......+|..+|+++|++|++++||+||+||+++++ ++++...+|....++.
T Consensus 308 ~GDV~~~~~Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~-~~~~~~~~f~~~~ra~ 386 (454)
T COG1249 308 IGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGI-DYKVGKFPFAANGRAI 386 (454)
T ss_pred eeccCCCcccHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCC-ceEEEEeecccchhHH
Confidence 999999988999999999999999998555667899999999999999999999999999854 7899999999999998
Q ss_pred ccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 414 SGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 414 ~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
....+.||+|+++|+++++|||+|++|++|.|+|+.++++|++++|++++.+++|+|||++|.+.++
T Consensus 387 ~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a 453 (454)
T COG1249 387 TMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEA 453 (454)
T ss_pred hccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHh
Confidence 8888999999999999999999999999999999999999999999999999999999999998865
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-88 Score=613.63 Aligned_cols=473 Identities=58% Similarity=0.934 Sum_probs=443.1
Q ss_pred CCccccCCCCCCCCCccccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhH
Q 042564 1 MARKMLNDGELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKK 80 (498)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~ 80 (498)
|.|++....+... +....++||.+|||||.+|+++|++++..|.+|.|+|. +.++||+|+++||+|+|
T Consensus 1 ~~r~~~~~~~~~~---~a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~---------~f~lGGTCVn~GCVPKK 68 (478)
T KOG0405|consen 1 MARQMLVDGEIDK---MAADVKDFDYLVIGGGSGGVASARRAASHGAKVALCEL---------PFGLGGTCVNVGCVPKK 68 (478)
T ss_pred CCccccccCCCCc---ccccccccceEEEcCCcchhHHhHHHHhcCceEEEEec---------CCCcCceEEeeccccce
Confidence 4455544444443 56666789999999999999999999999999999993 44999999999999999
Q ss_pred HHHHHhHhhHHHhhhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCc
Q 042564 81 ILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGT 160 (498)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~ 160 (498)
+||+++.+.+.+++...|||+......+||..+.+.++.++.++...|++.+.+.+|+++.|++.+++++.+.|+..+|.
T Consensus 69 vm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~ 148 (478)
T KOG0405|consen 69 VMWYAADYSEEMEDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGT 148 (478)
T ss_pred eEEehhhhhHHhhhhhhcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCe
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999988887
Q ss_pred eEEEEcCeEEEcCCCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCC
Q 042564 161 KLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF 240 (498)
Q Consensus 161 ~~~~~~d~liiAtG~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~ 240 (498)
...|++.+++||||++|.+|+|||.++.++++.+++|+++|++++|+|+|++++|+|..|+.+|++++++.|.+.+|+.|
T Consensus 149 ~~~Ytak~iLIAtGg~p~~PnIpG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~F 228 (478)
T KOG0405|consen 149 KIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGF 228 (478)
T ss_pred eEEEecceEEEEeCCccCCCCCCchhhccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcch
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeE
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~ 319 (498)
|+.++..+.+.++.+||++|.++.+.++.+..++ ..+..+.|+...+|.++||+|+.||+..|+|++.|++++++|.|.
T Consensus 229 D~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~Ii 308 (478)
T KOG0405|consen 229 DEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAII 308 (478)
T ss_pred hHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEE
Confidence 9999999999999999999999999999887776 556666776666999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhC-CCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCC--
Q 042564 320 VDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG-GQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGK-- 396 (498)
Q Consensus 320 vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~-- 396 (498)
||+|.+||+|+||++||+++...++++|++.|+.+++.+++ .++.+++|.++|.++|+.|+++.|||||+||.++ |
T Consensus 309 vDeYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiek-yg~ 387 (478)
T KOG0405|consen 309 VDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEK-YGK 387 (478)
T ss_pred EeccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHH-hCc
Confidence 99999999999999999999999999999999999999998 5677899999999999999999999999999987 5
Q ss_pred CCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHH
Q 042564 397 GDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEE 476 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~ 476 (498)
+++.+|...|.++.+++...+++-++||++..++.+++|+|++|+++.|+++.|+.|+++|+|-.|+...+.+|||.+|+
T Consensus 388 ~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEE 467 (478)
T KOG0405|consen 388 GDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEE 467 (478)
T ss_pred cceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHHH
Confidence 58999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 042564 477 FVTMRSVTRR 486 (498)
Q Consensus 477 ~~~~~~~~~~ 486 (498)
|..|+...|+
T Consensus 468 lVTmr~~tr~ 477 (478)
T KOG0405|consen 468 LVTMRSVTRR 477 (478)
T ss_pred heeccccccC
Confidence 9998876653
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-84 Score=663.14 Aligned_cols=497 Identities=87% Similarity=1.358 Sum_probs=436.7
Q ss_pred CCccccCCCCCCCCCcc-ccC-CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchh
Q 042564 1 MARKMLNDGELSQPNQE-EQT-HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVP 78 (498)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~-~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p 78 (498)
|+|.+.-.+++.+.... ..+ ..+||++||||||||++||.+|++.|++|+|||+++...+....+.+||+|+|+||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciP 80 (499)
T PLN02507 1 MARKMLIDGEVAKVNADEANATHYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVP 80 (499)
T ss_pred CCcccccchhhhhHhhhhhcccccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchh
Confidence 55655555544442211 112 3469999999999999999999999999999995333323333467999999999999
Q ss_pred hHHHHHHhHhhHHHhhhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCC
Q 042564 79 KKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLD 158 (498)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~ 158 (498)
+|.+++.+.+.+.+.....+|+.......++|.+++.+....+.++...++..+.+.+|+++.+++.+++++.+.|...+
T Consensus 81 sK~l~~~a~~~~~~~~~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~ 160 (499)
T PLN02507 81 KKILVYGATFGGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLD 160 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCC
Confidence 99999999998888888889887655568999999999999999988888888999999999999999999999998877
Q ss_pred CceEEEEcCeEEEcCCCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC
Q 042564 159 GTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR 238 (498)
Q Consensus 159 g~~~~~~~d~liiAtG~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~ 238 (498)
|+...+.||+||||||++|..|++||.+..+++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++
T Consensus 161 g~~~~~~~d~LIIATGs~p~~p~ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~ 240 (499)
T PLN02507 161 GTKLRYTAKHILIATGSRAQRPNIPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR 240 (499)
T ss_pred CcEEEEEcCEEEEecCCCCCCCCCCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc
Confidence 76557899999999999999999999876678888888878899999999999999999999999999999999998888
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCe
Q 042564 239 GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318 (498)
Q Consensus 239 ~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i 318 (498)
.+++++.+.+.+.|++.||++++++.|.++..+++++.+.+.+|+++++|.|++++|++||++.+.+++.|++++++|+|
T Consensus 241 ~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I 320 (499)
T PLN02507 241 GFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAV 320 (499)
T ss_pred ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcE
Confidence 89999999999999999999999999999987666777888888889999999999999999987788899999999999
Q ss_pred EcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCC
Q 042564 319 KVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGD 398 (498)
Q Consensus 319 ~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~ 398 (498)
.||+++||++|||||+|||++.+.+++.|.+||+++|+||+++....+++..+|+.+|+.|++++||+||+||+.++..+
T Consensus 321 ~Vd~~~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~ 400 (499)
T PLN02507 321 KVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGD 400 (499)
T ss_pred ecCCCCcCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCC
Confidence 99999999999999999999988999999999999999999876666778889999999999999999999999873336
Q ss_pred EEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHH
Q 042564 399 ILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFV 478 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~ 478 (498)
+.+....+.+..+++....+++|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~ 480 (499)
T PLN02507 401 ILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFV 480 (499)
T ss_pred EEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHH
Confidence 77777777766666555567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCC
Q 042564 479 TMRSVTRRVAAASSNPKTNL 498 (498)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~ 498 (498)
+++...+ ..++...|||||
T Consensus 481 ~~~~~~~-~~~~~~~~~~~~ 499 (499)
T PLN02507 481 TMRSVTR-RVTAKGKPKTNL 499 (499)
T ss_pred HHHhhhc-cccccCCCCCCC
Confidence 8776666 556678899997
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-81 Score=643.15 Aligned_cols=460 Identities=57% Similarity=0.980 Sum_probs=413.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||+.||+.|++.|++|+|||+++...+.+..+.+||+|+|+||+|+|.+++.+...+.+++...||+.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~ 157 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK 157 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 46999999999999999999999999999999543222333457899999999999999999999999988888889987
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
......+||..++.+++..+.++..++...+++.+|+++.|.+.+++++.+.+ +|+ .+.||+||||||++|..|+
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v---~G~--~~~~D~LVIATGs~p~~P~ 232 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV---DGK--LYTARNILIAVGGRPFIPD 232 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE---CCE--EEECCEEEEeCCCCCCCCC
Confidence 64446799999999999999999999999999999999999999999988776 554 7999999999999999999
Q ss_pred CCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEc
Q 042564 182 IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 182 i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
+||.+.++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.|+++||++++
T Consensus 233 IpG~~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~ 312 (558)
T PLN02546 233 IPGIEHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHT 312 (558)
T ss_pred CCChhhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEe
Confidence 99988888888888887789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC
Q 042564 262 RTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR 340 (498)
Q Consensus 262 ~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 340 (498)
++.+.++..++++ +.+.+.+++...+|.|++++|++||.+.+.+++.|++++++|+|.||+++||++|||||+|||++.
T Consensus 313 ~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~ 392 (558)
T PLN02546 313 EESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDR 392 (558)
T ss_pred CCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCC
Confidence 9999999764333 555566665556999999999999999877788999999889999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCcee
Q 042564 341 MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT 420 (498)
Q Consensus 341 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
+++++.|.+||+++|+||++......++..+|+++|++|++++||+||+||+++++ ++.++...+.+..+.+....+++
T Consensus 393 ~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~-~~~~~~~~~~~~~~~~~~~~~~g 471 (558)
T PLN02546 393 INLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYG-DVDVFTANFRPLKATLSGLPDRV 471 (558)
T ss_pred cccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCC-CeEEEEEecccchhhhhCCCCcE
Confidence 99999999999999999998665556788999999999999999999999999854 67888888877665555556789
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHHHHHH
Q 042564 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRV 487 (498)
Q Consensus 421 ~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~ 487 (498)
|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.+++...+.+
T Consensus 472 ~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~~~~~~~ 538 (558)
T PLN02546 472 FMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKI 538 (558)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999988777766
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-80 Score=630.84 Aligned_cols=467 Identities=40% Similarity=0.702 Sum_probs=404.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhC-CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF-GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
++|||+||||||||+.||.++++. |++|+|||+.... ..+....+||+|+|+||+|+|.|+..++..+.+++...||+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~-~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHH-GPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCc-cccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCe
Confidence 469999999999999999999996 9999999931000 00112479999999999999999999999888888888887
Q ss_pred ccc-cccccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEEEeCCEEEEEeCC---C-ceEEEEcCeEEEcCC
Q 042564 101 EVH-EKIDFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKIVGPNEVEVTQLD---G-TKLSYSAKHILIATG 174 (498)
Q Consensus 101 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~i~~~~~~v~~~~---g-~~~~~~~d~liiAtG 174 (498)
... ....+||..+.++++..+.++...+...++. .+|+++.|++.+++++++.|.... + ....++||+||||||
T Consensus 81 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATG 160 (486)
T TIGR01423 81 EFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATG 160 (486)
T ss_pred eccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecC
Confidence 643 2457899999999999999998888888877 499999999999999999986421 1 134799999999999
Q ss_pred CCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHC---CCcEEEEeeCCCCCCCCCHHHHHHHHHH
Q 042564 175 SRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGM---GSTVDLLFRKELPLRGFDDEMRAVVARN 251 (498)
Q Consensus 175 ~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~V~lv~~~~~~l~~~~~~~~~~l~~~ 251 (498)
++|..|++||.+.++++++++.+...|++++|||+|++|+|+|..|..+ |.+|+++++.+++++.+|+++.+.+.+.
T Consensus 161 s~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~ 240 (486)
T TIGR01423 161 SWPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQ 240 (486)
T ss_pred CCCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHH
Confidence 9999999999887888888888888899999999999999999888765 9999999999999999999999999999
Q ss_pred HHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCC
Q 042564 252 LEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPS 330 (498)
Q Consensus 252 l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~ 330 (498)
|+++||++++++.+.++..++++ ..+.+.+|+++++|.|++|+|++||++.+.+++.+++++++|+|.||+++||++||
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~ 320 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPN 320 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCCCC
Confidence 99999999999999999865444 56777778889999999999999999988788899999999999999999999999
Q ss_pred eEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCc
Q 042564 331 IWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMR 410 (498)
Q Consensus 331 iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~ 410 (498)
|||+|||++.+++++.|.+||+++++||++......++..+|+++|+.|++++||+||+||++. +..+.++...+.+..
T Consensus 321 IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~-~~~~~~~~~~~~~~~ 399 (486)
T TIGR01423 321 IYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKK-FEKVAVYESSFTPLM 399 (486)
T ss_pred EEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhc-CCceEEEEEeeCchh
Confidence 9999999999999999999999999999986545567778999999999999999999999987 446666666666554
Q ss_pred cccccCC-ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHHHHHHhc
Q 042564 411 NTISGRQ-EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAA 489 (498)
Q Consensus 411 ~~~~~~~-~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~~~ 489 (498)
..+.... +.+|+||++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|.+.++....+.+..
T Consensus 400 ~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~~~~~~~ 479 (486)
T TIGR01423 400 HNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYQK 479 (486)
T ss_pred hhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhccccccccc
Confidence 4433222 368999999999999999999999999999999999999999999999999999999999887544444443
Q ss_pred c
Q 042564 490 A 490 (498)
Q Consensus 490 ~ 490 (498)
|
T Consensus 480 ~ 480 (486)
T TIGR01423 480 G 480 (486)
T ss_pred C
Confidence 3
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-80 Score=627.56 Aligned_cols=444 Identities=43% Similarity=0.729 Sum_probs=401.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
++|||+||||||||++||+.|++.|++|+||| +..+||+|+|+||+|+|.++..+......++...||+.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~ 70 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVE----------AKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFY 70 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEec----------ccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcc
Confidence 36999999999999999999999999999999 66799999999999999999999988888888888876
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC-
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA- 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p- 180 (498)
......++|..+..+++..++++...+...+.+.+|+++.+++.+.+++.+.+ +++ .++||+||||||++|+.|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v---~~~--~~~~d~vIiAtGs~p~~p~ 145 (450)
T TIGR01421 71 QNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV---NGR--DYTAPHILIATGGKPSFPE 145 (450)
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CCE--EEEeCEEEEecCCCCCCCC
Confidence 54334689999999999999998888888899999999999998888887766 443 799999999999999999
Q ss_pred CCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 181 ~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
++||.+..+++++++.+...|++++|||+|++|+|+|..|+++|.+|+++++.+++++.+|+++.+.+.+.|+++||+++
T Consensus 146 ~i~g~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 146 NIPGAELGTDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVH 225 (450)
T ss_pred CCCCCceeEcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEE
Confidence 89998777788888888888999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCccEEEEEEeCCe-EEEEECCC-eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccC
Q 042564 261 PRTTIKELIKSEEG-VKVITDHG-EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338 (498)
Q Consensus 261 ~~~~v~~i~~~~~~-~~v~~~~g-~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~ 338 (498)
+++.+.++..++++ +.+.+++| +.+++|.|++++|++||++.+.++..+++++++|+|.||+++||++|||||+|||+
T Consensus 226 ~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~ 305 (450)
T TIGR01421 226 KLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVV 305 (450)
T ss_pred cCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecC
Confidence 99999999875444 66777777 57999999999999999998778889999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCC-CCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCccccccC
Q 042564 339 NRMNLTPVALMEGTCFAKTVFGGQ-PCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGR 416 (498)
Q Consensus 339 ~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
+.+.+++.|.+||+++|+||+++. ....++..+|+++|++|++++||+||+||+++ ++..+.+...++.+..++....
T Consensus 306 ~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 385 (450)
T TIGR01421 306 GKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSE 385 (450)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcC
Confidence 999999999999999999999754 34457889999999999999999999999876 4445777777777766665556
Q ss_pred CceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 417 QEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 417 ~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
.+.+|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++
T Consensus 386 ~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T TIGR01421 386 KQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM 449 (450)
T ss_pred CCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence 7789999999999999999999999999999999999999999999999999999999998765
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-79 Score=624.27 Aligned_cols=444 Identities=68% Similarity=1.102 Sum_probs=404.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+||||||||++||+.|++.|++|+|+| +..+||+|+++||+|+|.++..+.....+++...||+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 71 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAE----------EPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTV 71 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEe----------cCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCC
Confidence 5999999999999999999999999999999 567999999999999999999999998888888888865
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
. ...++|..+..+++..+.++...++..+.+.+++++.+++.+++++.+.+.. +|+ .++||+||||||++|..|++
T Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~-~g~--~~~~d~lIiATGs~p~~p~i 147 (446)
T TIGR01424 72 G-KARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQ-DGT--TYTAKKILIAVGGRPQKPNL 147 (446)
T ss_pred C-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEec-CCe--EEEcCEEEEecCCcCCCCCC
Confidence 3 4578999999999999999988899999999999999999999998887753 443 79999999999999999999
Q ss_pred CCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcC
Q 042564 183 PGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPR 262 (498)
Q Consensus 183 ~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 262 (498)
||.+..+++++.+.+...+++++|||+|++|+|+|..++++|.+|+++++.+.+++.+++++.+.+.+.+++.||+++++
T Consensus 148 ~G~~~~~~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~ 227 (446)
T TIGR01424 148 PGHELGITSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQ 227 (446)
T ss_pred CCccceechHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeC
Confidence 99877778888888877899999999999999999999999999999999999888899999999999999999999999
Q ss_pred ccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCC
Q 042564 263 TTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMN 342 (498)
Q Consensus 263 ~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~ 342 (498)
+.|.++..++++..+++.+|+++++|.|++|+|++||++.+.+++.+++++++|+|.||+++||++|||||+|||++.++
T Consensus 228 ~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~ 307 (446)
T TIGR01424 228 TSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRIN 307 (446)
T ss_pred CEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCcc
Confidence 99999987666677777788889999999999999999987788899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEE
Q 042564 343 LTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVM 422 (498)
Q Consensus 343 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (498)
+++.|.+||+++|+||+++...+.++..+|+++|+.|++++||+||+||++++..++.+....+.+..+++....+++|+
T Consensus 308 l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 387 (446)
T TIGR01424 308 LTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLM 387 (446)
T ss_pred chhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEE
Confidence 99999999999999999865555677889999999999999999999999873136777777776666665556678999
Q ss_pred EEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 423 KLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 423 kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++
T Consensus 388 kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 445 (446)
T TIGR01424 388 KLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM 445 (446)
T ss_pred EEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999988764
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=622.54 Aligned_cols=445 Identities=47% Similarity=0.801 Sum_probs=403.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhh-hhcC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELED-ARSY 98 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~ 98 (498)
|+.+|||+||||||||++||+.|++.|++|+||| +..+||+|+|+||+|+|.+++.+.....++. ...+
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE----------~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~ 70 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIE----------AKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGY 70 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEe----------ccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhc
Confidence 3456999999999999999999999999999999 5689999999999999999999988887776 5667
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
|+... .+.++|..+..+....++++...+...+.+.+|+++.+++.+++++.+.+ +|+ .++||+||||||++|+
T Consensus 71 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~---~g~--~~~~d~lViATGs~p~ 144 (450)
T PRK06116 71 GFDVT-ENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV---NGE--RYTADHILIATGGRPS 144 (450)
T ss_pred CCCCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CCE--EEEeCEEEEecCCCCC
Confidence 77543 45789999999998888888888888888899999999999999887776 443 7999999999999999
Q ss_pred CCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 179 RAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 179 ~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
.|++||.+.++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+++.||+
T Consensus 145 ~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~ 224 (450)
T PRK06116 145 IPDIPGAEYGITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIR 224 (450)
T ss_pred CCCCCCcceeEchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcE
Confidence 99999988888888888888889999999999999999999999999999999999888889999999999999999999
Q ss_pred EEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEeccc
Q 042564 259 LHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
+++++.|.++..++++ +.+.+.+|+++++|.|++|+|++|+.+.+.++..+++++++|+|.||+++||++|||||+|||
T Consensus 225 i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~ 304 (450)
T PRK06116 225 LHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDV 304 (450)
T ss_pred EECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeec
Confidence 9999999999876555 677888888899999999999999999877788999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCC-CCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCC-CEEEEEEecCCCcccccc
Q 042564 338 TNRMNLTPVALMEGTCFAKTVFGGQP-CKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKG-DILVFTSSFNPMRNTISG 415 (498)
Q Consensus 338 ~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~-~~~~~~~~~~~~~~~~~~ 415 (498)
++.+++++.|.+||+++|+||++... ...++..+|+.+|+.|++++||+||+||+++++. .+.+....+....+++..
T Consensus 305 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (450)
T PRK06116 305 TGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTG 384 (450)
T ss_pred CCCcCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhc
Confidence 98889999999999999999998654 4567889999999999999999999999998553 377777777777776656
Q ss_pred CCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 416 RQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 416 ~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
..+++|+||++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++
T Consensus 385 ~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T PRK06116 385 HRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTM 449 (450)
T ss_pred CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhhc
Confidence 67889999999999999999999999999999999999999999999999999999999998764
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-79 Score=564.09 Aligned_cols=449 Identities=33% Similarity=0.546 Sum_probs=414.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh--hhhcCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE--DARSYG 99 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~--~~~~~g 99 (498)
.+|||+|||+||+|..||+++++.|++.+.||| ++.+||+|+|.||+|+|.|++.+.+++.+. +...+|
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEk---------r~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rG 108 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEK---------RGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRG 108 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEec---------cCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcC
Confidence 579999999999999999999999999999997 799999999999999999999999988775 466778
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
++.. ...+|...++..+...+.++...++..+++++|+++.|.+.+++++.+.+...+|+...+.++++||||||. .
T Consensus 109 i~vs-~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe--V 185 (506)
T KOG1335|consen 109 IDVS-SVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE--V 185 (506)
T ss_pred cccc-ceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc--c
Confidence 8765 678999999999999999999999999999999999999999999999999989888899999999999984 2
Q ss_pred CCCCCC----CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhC
Q 042564 180 APIPGQ----ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255 (498)
Q Consensus 180 p~i~g~----~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~ 255 (498)
+++||. +.+.+++.+++|.+.|++++|+|+|++|+|+++.+.++|.+||+++..+.+.+.+|.++++.+++.|+.+
T Consensus 186 ~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQ 265 (506)
T KOG1335|consen 186 TPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQ 265 (506)
T ss_pred CCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhc
Confidence 334564 3478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEcCccEEEEEEeCCe-EEEEECC---C--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 256 GINLHPRTTIKELIKSEEG-VKVITDH---G--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~~-~~v~~~~---g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
|+.+++++.|..+...+++ +.+++.+ + ++++||.+++++|++|.+..|++++.|++.|+.|.+.||..++|.+|
T Consensus 266 gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP 345 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVP 345 (506)
T ss_pred CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCC
Confidence 9999999999999988774 5555532 3 37999999999999999999999999999999999999999999999
Q ss_pred CeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCC
Q 042564 330 SIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM 409 (498)
Q Consensus 330 ~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~ 409 (498)
|||+|||+..+|++++.|..||..+.+.|.++. ...+|..+|.++|++|++++||+||++++++|+ .+.+.+.+|...
T Consensus 346 ~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~-~hv~ynciP~v~ythPEvawVG~TEeqlkeegi-~y~vgkfpF~aN 423 (506)
T KOG1335|consen 346 HIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH-GHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGI-KYKVGKFPFSAN 423 (506)
T ss_pred ceEEecccCCcchhhhhhhhhchhheeeecccC-cccccCCCCceeecccceeeeccchhhHHhcCc-ceEeeecccccc
Confidence 999999999999999999999999999998754 356788899999999999999999999999976 789999999998
Q ss_pred ccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHHH
Q 042564 410 RNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVT 484 (498)
Q Consensus 410 ~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~ 484 (498)
.++.+..+.+||+|+++|+++++|||+||+|++|.|+|++.++||+.|++.+|+++.+|+|||+||++.++-.++
T Consensus 424 sRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA 498 (506)
T KOG1335|consen 424 SRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAA 498 (506)
T ss_pred chhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHHh
Confidence 888888888999999999999999999999999999999999999999999999999999999999998854433
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-78 Score=619.50 Aligned_cols=444 Identities=38% Similarity=0.643 Sum_probs=391.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||++||..|++.|++|+||| +..+||+|+|+||+|+|.++.++.....+++...+|+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIE----------k~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~ 116 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVE----------KDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFD 116 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEe----------cccccccccccCCCCCchhhhhcccHHHHHHHHhcCCC
Confidence 57999999999999999999999999999999 66899999999999999999999988888888888876
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEE--------------------------
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVT-------------------------- 155 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~-------------------------- 155 (498)
.. ..+||..++++.+....++...+...+++.||+++.|++.+.+++++.|.
T Consensus 117 ~~--~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (561)
T PTZ00058 117 TQ--FSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQ 194 (561)
T ss_pred cc--CccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeecccee
Confidence 32 47899999999999998888888888898999999999999999987642
Q ss_pred eCCCceEEEEcCeEEEcCCCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 156 QLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 156 ~~~g~~~~~~~d~liiAtG~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
..+|. .++||+||||||++|+.|++||.+.++++++++.+.. +++++|||+|++|+|+|..|.++|++|+++++.++
T Consensus 195 ~~~g~--~i~ad~lVIATGS~P~~P~IpG~~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 195 LDDGQ--VIEGKNILIAVGNKPIFPDVKGKEFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred cCCCc--EEECCEEEEecCCCCCCCCCCCceeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 22443 7999999999999999999999877788888887766 89999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC-eEEEEECC-CeEEEcCEEEEecCCCcCCCCCCcccCCceeC
Q 042564 236 PLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEE-GVKVITDH-GEEIVADVVLFATGRAPNTKRLNLKAVGVEVD 313 (498)
Q Consensus 236 ~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~v~~~~-g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~ 313 (498)
+++.+|+++.+.+.+.|++.||++++++.+.++..+++ ++.+.+.+ ++++++|.|++|+|++||++.++++..++. +
T Consensus 272 il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~ 350 (561)
T PTZ00058 272 LLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-T 350 (561)
T ss_pred ccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-c
Confidence 99989999999999999999999999999999986543 35555544 457999999999999999999877777665 4
Q ss_pred CCCCeEcCCCCCCCCCCeEEecccCC----------------------------------CCCChHHHHHHHHHHHHHHh
Q 042564 314 QTGAVKVDENSRTNVPSIWAVGDVTN----------------------------------RMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 314 ~~g~i~vd~~~~t~~~~iya~GD~~~----------------------------------~~~~~~~A~~~g~~aa~~i~ 359 (498)
++|+|.||+++||++|||||+|||++ .+++++.|.+||+++|+||+
T Consensus 351 ~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~ 430 (561)
T PTZ00058 351 PKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF 430 (561)
T ss_pred CCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999 57889999999999999999
Q ss_pred CCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCccccc----cCCceeEEEEEEECCCCeEE
Q 042564 360 GGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTIS----GRQEKTVMKLVVDAETEKVL 434 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~kl~~~~~~~~i~ 434 (498)
+......++..+|+++|++|++|+||+||+||+++ |+..+.+....+....++.. ...+++|+|+++++++++|+
T Consensus 431 g~~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~IL 510 (561)
T PTZ00058 431 GPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIK 510 (561)
T ss_pred CCCCcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEE
Confidence 86444456788999999999999999999999987 44457777666665554422 23467999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 435 GASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 435 G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
|+|++|++|.|+|+.+++||++++|++||.+++|+|||++|++.+++
T Consensus 511 G~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~ 557 (561)
T PTZ00058 511 GLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMA 557 (561)
T ss_pred EEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhc
Confidence 99999999999999999999999999999999999999999988754
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-77 Score=612.53 Aligned_cols=450 Identities=29% Similarity=0.454 Sum_probs=402.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|+.+|||+||||||||++||..|++.|++|+|||+ ...+||+|+|+||+|+|.++..+.....+.....+|
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~---------~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g 71 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVER---------YSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHG 71 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEec---------CCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcC
Confidence 45679999999999999999999999999999993 347899999999999999999998888888888888
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+... ...+||..+..+++..++++...+...+++.||+++.+++.+++++.+.|...+|+..+++||+||||||++|+.
T Consensus 72 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 150 (471)
T PRK06467 72 IVFG-EPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQ 150 (471)
T ss_pred cccC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCC
Confidence 7654 457899999999999888888888888899999999999999999999998766644579999999999999974
Q ss_pred -CCCCCC-CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 180 -APIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 180 -p~i~g~-~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
|.+++. +.++++++.+.+...|++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+.+.|+++ |
T Consensus 151 ~p~~~~~~~~v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v 229 (471)
T PRK06467 151 LPFIPHDDPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-F 229 (471)
T ss_pred CCCCCCCCCcEEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-e
Confidence 445553 3478888888888889999999999999999999999999999999999999999999999999999988 9
Q ss_pred EEEcCccEEEEEEeCCeEEEEECC--C--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 258 NLHPRTTIKELIKSEEGVKVITDH--G--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
++++++.|.+++.+++++.+++.+ + +++++|.||+|+|++||++.+.++..+++++++|+|.||+++||++|+|||
T Consensus 230 ~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyA 309 (471)
T PRK06467 230 NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFA 309 (471)
T ss_pred EEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEE
Confidence 999999999998766666666543 2 369999999999999999987778899999999999999999999999999
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccc
Q 042564 334 VGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTI 413 (498)
Q Consensus 334 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
+|||++.+.+++.|.+||+++|+||++. ..+.++..+|+++|++|++++||+||+||+.+|+ ++.+....+....++.
T Consensus 310 iGDv~~~~~la~~A~~eG~~aa~~i~g~-~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~-~~~~~~~~~~~~~~~~ 387 (471)
T PRK06467 310 IGDIVGQPMLAHKGVHEGHVAAEVIAGK-KHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGI-EYETATFPWAASGRAI 387 (471)
T ss_pred ehhhcCCcccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEECCCceeEEECCHHHHHhcCC-CeEEEEEecCcchhhh
Confidence 9999998889999999999999999975 3456778899999999999999999999999866 6777777777666666
Q ss_pred ccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 414 SGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 414 ~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
....+++|+|+++|+++++|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 388 ~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~ 456 (471)
T PRK06467 388 ASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAE 456 (471)
T ss_pred hCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHH
Confidence 566778999999999999999999999999999999999999999999999999999999999887543
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-77 Score=613.49 Aligned_cols=447 Identities=34% Similarity=0.551 Sum_probs=400.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|+.+|||+||||||||++||+.|++.|++|+||| +..+||+|+|+||+|+|.++..+...........+|
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 71 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIE----------RGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYG 71 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcC
Confidence 5667999999999999999999999999999999 668999999999999999999999988888888888
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
+.......+||..+..+......++...+...+++. +++++.+++.+++++++.+ ++. +++||+||||||++|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v---~~~--~~~~d~lViATGs~p~ 146 (463)
T PRK06370 72 VSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV---GGE--TLRAKRIFINTGARAA 146 (463)
T ss_pred cccCccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE---CcE--EEEeCEEEEcCCCCCC
Confidence 865433578999999999988888777777888887 9999999998888888777 443 7899999999999999
Q ss_pred CCCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 179 RAPIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 179 ~p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
.|++||.+. ++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+++.|
T Consensus 147 ~p~i~G~~~~~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~G 226 (463)
T PRK06370 147 IPPIPGLDEVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREG 226 (463)
T ss_pred CCCCCCCCcCceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCC
Confidence 999999754 677888877777899999999999999999999999999999999999998899999999999999999
Q ss_pred CEEEcCccEEEEEEeCCeEEEEE--C-CCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 257 INLHPRTTIKELIKSEEGVKVIT--D-HGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~--~-~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
|++++++.|.++..++++..+.+ . +++++++|.||+|+|++||++.+.+++.|++++++|+|.||+++||++|||||
T Consensus 227 V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyA 306 (463)
T PRK06370 227 IDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYA 306 (463)
T ss_pred CEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEE
Confidence 99999999999987665544443 2 34579999999999999999966678889999999999999999999999999
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccc
Q 042564 334 VGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTI 413 (498)
Q Consensus 334 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
+|||++.+.+.+.|.+||+++|+||++..+...++..+|+.+|++|+++++|+||+||+++|+ ++.+....+....+++
T Consensus 307 iGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~-~~~~~~~~~~~~~~~~ 385 (463)
T PRK06370 307 AGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGR-RVLVGTRPMTRVGRAV 385 (463)
T ss_pred eeecCCCcccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCC-CeEEEEEecCcchhHH
Confidence 999999989999999999999999998645556778899999999999999999999999866 6888888888777776
Q ss_pred ccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 414 SGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 414 ~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
....+++|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 386 ~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~ 454 (463)
T PRK06370 386 EKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQ 454 (463)
T ss_pred hcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHH
Confidence 566778999999999999999999999999999999999999999999999999999999999887544
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-77 Score=613.30 Aligned_cols=459 Identities=40% Similarity=0.659 Sum_probs=398.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+||++||||||||+.+|+.|++.|++|+|||+.... .......+||+|+|+||+|+|.|+..+.......+...||+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~-~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPT-PLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC-CCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCccc
Confidence 589999999999999999999999999999941100 0011225899999999999999999999888877778888765
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
.....+||..++++++..+.++...+...++..+|+++.|.+.+++++++.|...+|....++||+||||||++|+.|++
T Consensus 81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~i 160 (484)
T TIGR01438 81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGI 160 (484)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCC
Confidence 43357899999999999999988888888999999999999999999999887655544579999999999999999999
Q ss_pred CCC-CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEc
Q 042564 183 PGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 183 ~g~-~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
||. +..+++++++.+...|++++|||+|++|+|+|..|+++|.+|+++.+ +.+++.+|+++.+.+++.|++.||++++
T Consensus 161 pG~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~~ 239 (484)
T TIGR01438 161 PGAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFKR 239 (484)
T ss_pred CCccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEEe
Confidence 997 44578888888888899999999999999999999999999999998 5778889999999999999999999999
Q ss_pred CccEEEEEEeCCeEEEEECCC---eEEEcCEEEEecCCCcCCCCCCcccCCceeCC-CCCeEcCCCCCCCCCCeEEeccc
Q 042564 262 RTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQ-TGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 262 ~~~v~~i~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~-~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
++.+.++...++.+.+++.++ +++++|.|++|+|++||++.+.+++.|+++++ +|+|.||+++||++|+|||+|||
T Consensus 240 ~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv 319 (484)
T TIGR01438 240 QFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDI 319 (484)
T ss_pred CceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEEEe
Confidence 999999987666666666555 37999999999999999998888899999975 48999999999999999999999
Q ss_pred CC-CCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCcccccc
Q 042564 338 TN-RMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISG 415 (498)
Q Consensus 338 ~~-~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~~~~ 415 (498)
+. .+.+++.|.+||+++|+||++......++..+|+.+|++|++++||+||+||+++ ++..+.+....+.+..+++..
T Consensus 320 ~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 399 (484)
T TIGR01438 320 LEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPS 399 (484)
T ss_pred cCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhhHhhC
Confidence 96 5788999999999999999976554566788999999999999999999999986 333567776677666555443
Q ss_pred CC--ceeEEEEEEE-CCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHH
Q 042564 416 RQ--EKTVMKLVVD-AETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSV 483 (498)
Q Consensus 416 ~~--~~~~~kl~~~-~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~ 483 (498)
.. +.+|+|++++ +++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++...
T Consensus 400 ~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~ 470 (484)
T TIGR01438 400 RDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVT 470 (484)
T ss_pred CCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhhh
Confidence 33 5789999996 56899999999999999999999999999999999999999999999999886543
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-77 Score=605.15 Aligned_cols=440 Identities=30% Similarity=0.499 Sum_probs=389.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+||++||||||+|.+||..+ .|++|+||| +..+||+|+|+||+|+|.|+..++....+++...||+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie----------~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 68 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVE----------KGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDA 68 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEe----------CCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccC
Confidence 48999999999999998763 599999999 678999999999999999999999998888888888764
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHH-HHHH-HHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGI-YKRL-LSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
. ...+||..++.++....+++... .... ++..+++++.|++.+++++++.+. +|+ .++||+||||||++|+.|
T Consensus 69 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~--~g~--~~~~d~lViATGs~p~~p 143 (451)
T PRK07846 69 E-LDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTG--DGE--EITADQVVIAAGSRPVIP 143 (451)
T ss_pred C-CCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEEC--CCC--EEEeCEEEEcCCCCCCCC
Confidence 2 45789999999998888887543 3444 677899999999999988888773 444 799999999999999999
Q ss_pred CCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 181 PIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
++||.+. +++.+++..+...|++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+ +.||+
T Consensus 144 ~i~g~~~~~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~ 222 (451)
T PRK07846 144 PVIADSGVRYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWD 222 (451)
T ss_pred CCCCcCCccEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeE
Confidence 9998643 56888888888889999999999999999999999999999999999999889999998887655 56899
Q ss_pred EEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccC
Q 042564 259 LHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~ 338 (498)
+++++.+.++..+++++.+.+.+|+++++|.|++|+|++||++++++++.+++++++|+|.||+++||++|||||+|||+
T Consensus 223 i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~ 302 (451)
T PRK07846 223 VRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVS 302 (451)
T ss_pred EEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecC
Confidence 99999999998766667777888889999999999999999999877889999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCC-CCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCC
Q 042564 339 NRMNLTPVALMEGTCFAKTVFGGQP-CKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ 417 (498)
Q Consensus 339 ~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (498)
+.+++++.|.+||+++++||++... ...++..+|+.+|++|++++||+||+||++.|+ ++.+....+....+++....
T Consensus 303 ~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~ 381 (451)
T PRK07846 303 SPYQLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGL-DITVKVQNYGDVAYGWAMED 381 (451)
T ss_pred CCccChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCC-CEEEEEEecCcchhhhhCCC
Confidence 9989999999999999999997532 345677899999999999999999999999876 67777778887777665566
Q ss_pred ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCc-CCCCChhHHHHHHH
Q 042564 418 EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTV-GIHPSSAEEFVTMR 481 (498)
Q Consensus 418 ~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~-~~~pt~~e~~~~~~ 481 (498)
+++|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.++. ++|||++|.+.++.
T Consensus 382 ~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~ 446 (451)
T PRK07846 382 TTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENAL 446 (451)
T ss_pred CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999875 79999999887643
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-76 Score=603.82 Aligned_cols=444 Identities=30% Similarity=0.496 Sum_probs=391.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhh--hhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELED--ARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~--~~~~g~ 100 (498)
+|||+||||||||++||..|++.|++|+|||+ .+.+||+|+|+||+|+|.++..+.....+.. ...+|+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~---------~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi 73 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEG---------RSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGI 73 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEec---------CCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCc
Confidence 59999999999999999999999999999993 3679999999999999999999887765543 456776
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.. ...++|.+++.++...+.++....+..+++.+|+++.|++.+.+++++.|...+|+..+++||+||||||++|.
T Consensus 74 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~-- 149 (466)
T PRK06115 74 EV--KPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT-- 149 (466)
T ss_pred cc--cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC--
Confidence 54 35789999999999888888877888888889999999998889999888776665457999999999999985
Q ss_pred CCCCCC----cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 181 PIPGQE----LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 181 ~i~g~~----~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
++||.+ .++++++.+.+...|++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.|++.|
T Consensus 150 ~ipg~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~g 229 (466)
T PRK06115 150 PLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQG 229 (466)
T ss_pred CCCCCCCCCCeEECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 345542 3577888887777899999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEcCccEEEEEEeCCeEEEEEC---C--CeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCe
Q 042564 257 INLHPRTTIKELIKSEEGVKVITD---H--GEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSI 331 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~---~--g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~i 331 (498)
|++++++.|.++..+++++.+.+. + ++.+++|.|++|+|++||++.+.++..+++++++| +.||++++|++|+|
T Consensus 230 V~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~I 308 (466)
T PRK06115 230 MKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGV 308 (466)
T ss_pred CEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCE
Confidence 999999999999876555554432 2 35799999999999999999877788899988776 77899999999999
Q ss_pred EEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcc
Q 042564 332 WAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRN 411 (498)
Q Consensus 332 ya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~ 411 (498)
||+|||++.+++++.|.+||+++|+||++. ....++..+|.++|++|++++||+||+||++.|+ ++.+....|....+
T Consensus 309 yA~GD~~~~~~la~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~-~~~~~~~~~~~~~~ 386 (466)
T PRK06115 309 WVIGDVTSGPMLAHKAEDEAVACIERIAGK-AGEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGR-AYKVGKFPFTANSR 386 (466)
T ss_pred EEeeecCCCcccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEECCcccEEeeCCHHHHHHCCC-CEEEEEEecccChh
Confidence 999999999999999999999999999975 3446778899999999999999999999999865 67777777887777
Q ss_pred ccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 412 TISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 412 ~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+.....+.+|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 387 ~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~ 457 (466)
T PRK06115 387 AKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAM 457 (466)
T ss_pred hHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHH
Confidence 76666778999999999999999999999999999999999999999999999999999999999887554
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=600.21 Aligned_cols=446 Identities=30% Similarity=0.481 Sum_probs=392.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g~ 100 (498)
.+|||+||||||||++||++|++.|++|+||| +..+||+|.++||+|+|.++..+.+...+. ....+|.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie----------~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi 72 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVE----------KKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGI 72 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCC
Confidence 35999999999999999999999999999999 668999999999999999998887776654 3556666
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
. ....++|..+..+++...++........++..+|+.+.+++.+++++.+.|...+|+..+++||+||||||++|+.|
T Consensus 73 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~ 150 (466)
T PRK07818 73 S--GEVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL 150 (466)
T ss_pred C--cCcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC
Confidence 5 24578999999998888877777666677778999999999999999999987666556799999999999999765
Q ss_pred CCCCC---CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 181 PIPGQ---ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 181 ~i~g~---~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
||. ..+++.++.......|++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|+++||
T Consensus 151 --pg~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV 228 (466)
T PRK07818 151 --PGTSLSENVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGV 228 (466)
T ss_pred --CCCCCCCcEEchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCC
Confidence 443 235677766656667899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccEEEEEEeCCeEEEEEC--CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 258 NLHPRTTIKELIKSEEGVKVITD--HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~--~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
++++++.|.++..+++.+.+.+. +| +++++|.|++|+|++||++.+.+++.|++++++|+|.||+++||++|+|||
T Consensus 229 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyA 308 (466)
T PRK07818 229 KILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYA 308 (466)
T ss_pred EEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEE
Confidence 99999999999876655555543 56 369999999999999999987788899999988999999999999999999
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHHhCCCCCCC-CCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccc
Q 042564 334 VGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKP-DYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNT 412 (498)
Q Consensus 334 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~-~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~ 412 (498)
+|||++.+++++.|..||++||+||++...... ++..+|.++|++|++++||+||+||+.+|+ ++.+...+|....++
T Consensus 309 iGD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~ 387 (466)
T PRK07818 309 IGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGY-DVKVAKFPFTANGKA 387 (466)
T ss_pred EeecCCCcccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCC-cEEEEEEECCccchh
Confidence 999999889999999999999999997654333 778899999999999999999999999876 677778778777777
Q ss_pred cccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 413 ISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 413 ~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
.....+.+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|.+.++..
T Consensus 388 ~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 457 (466)
T PRK07818 388 HGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFH 457 (466)
T ss_pred hhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHH
Confidence 6566788999999999999999999999999999999999999999999999999999999999887544
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-76 Score=611.68 Aligned_cols=454 Identities=26% Similarity=0.379 Sum_probs=390.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhh---hcCC
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDA---RSYG 99 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~---~~~g 99 (498)
+|||+|||+||||++||.++++.|++|+|||+ . +..+||+|+|+||+|+|.|++.++..+.++.. ..||
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~------~--~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~G 187 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTG------D--DDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYG 187 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC------C--CCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCC
Confidence 79999999999999999999999999999992 0 12699999999999999999999988887765 4577
Q ss_pred ccc-----------------ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCC-------cEEEEeEEEEEeCCEEEEE
Q 042564 100 WEV-----------------HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAG-------VKLYEGEGKIVGPNEVEVT 155 (498)
Q Consensus 100 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------v~~~~~~~~~i~~~~~~v~ 155 (498)
+.. .....+||..+.++.+..+..+...+...+++.+ ++++.|.+.+++++++.+.
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~ 267 (659)
T PTZ00153 188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE 267 (659)
T ss_pred eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence 651 1345789999999999999998888888887764 8999999999999998875
Q ss_pred eCCCceEEEEcCeEEEcCCCCCCCCCCCCCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 156 QLDGTKLSYSAKHILIATGSRAQRAPIPGQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 156 ~~~g~~~~~~~d~liiAtG~~p~~p~i~g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
. +|+ ++.||+||||||++|+.|++++.+ .++++++.+.+...+++++|||+|++|+|+|..|.++|.+|+++++.
T Consensus 268 ~-~g~--~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~ 344 (659)
T PTZ00153 268 K-SGK--EFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYS 344 (659)
T ss_pred c-CCE--EEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 2 443 799999999999999998766543 37888888888888999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhCCCEEEcCccEEEEEEeCCe--EEEEECC-------C--------eEEEcCEEEEecC
Q 042564 234 ELPLRGFDDEMRAVVARNL-EGRGINLHPRTTIKELIKSEEG--VKVITDH-------G--------EEIVADVVLFATG 295 (498)
Q Consensus 234 ~~~l~~~~~~~~~~l~~~l-~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~-------g--------~~i~~D~vi~a~G 295 (498)
+++++.+|+++.+.+.+.+ ++.||++++++.|.++..+++. +.+.+.+ + +++++|.|++|+|
T Consensus 345 ~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG 424 (659)
T PTZ00153 345 PQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG 424 (659)
T ss_pred CcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEEC
Confidence 9999999999999998876 6789999999999999865543 4454321 1 2699999999999
Q ss_pred CCcCCCCCCcccCCceeCCCCCeEcCCCCCCC------CCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCC-------
Q 042564 296 RAPNTKRLNLKAVGVEVDQTGAVKVDENSRTN------VPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQ------- 362 (498)
Q Consensus 296 ~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~------~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~------- 362 (498)
++||++.+.++..++++++ |+|.||++|||+ +|||||+|||++.+++++.|.+||+++++||++..
T Consensus 425 r~Pnt~~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~ 503 (659)
T PTZ00153 425 RKPNTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNIN 503 (659)
T ss_pred cccCCccCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCCCccccccc
Confidence 9999998878888998875 899999999997 69999999999999999999999999999999752
Q ss_pred -----CCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCC-CCEEEEEEecCCCccccccCC-------------------
Q 042564 363 -----PCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGK-GDILVFTSSFNPMRNTISGRQ------------------- 417 (498)
Q Consensus 363 -----~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------- 417 (498)
....+|..+|+++|++|++++||+||+||++.++ .++.+....|....+++....
T Consensus 504 ~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~ 583 (659)
T PTZ00153 504 VENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNT 583 (659)
T ss_pred cccccccccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhcccccccccccccccccccccc
Confidence 3345678899999999999999999999999853 245666666665554432222
Q ss_pred ---ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHHHHHHh
Q 042564 418 ---EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVA 488 (498)
Q Consensus 418 ---~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~~ 488 (498)
+++|+|+++++++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++.....++.
T Consensus 584 ~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~~~~ 657 (659)
T PTZ00153 584 VDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIAGVR 657 (659)
T ss_pred ccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999988766655543
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-75 Score=599.70 Aligned_cols=449 Identities=29% Similarity=0.447 Sum_probs=398.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||++||+.|++.|++|+|||+ ...+||+|.+.||+|+|.++..+...........| ..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~---------~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~-~~ 73 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIER---------YRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLY-SS 73 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEec---------cccccccccccCCCCHHHHHHHHHHHHHHhhhhhh-cc
Confidence 469999999999999999999999999999993 35799999999999999998877665544443333 11
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
......++|..++.+.....+++...+...+.+.+++++.+++.+++++.+.|...+|+...++||+||||||++|+.|+
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~ 153 (461)
T PRK05249 74 YRVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPP 153 (461)
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCC
Confidence 12234678999999999888888888888888899999999999999999999876665457999999999999999988
Q ss_pred CCCCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEE
Q 042564 182 IPGQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 182 i~g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 259 (498)
+++.+ .++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+|+++.+.+.+.+++.||++
T Consensus 154 ~~~~~~~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v 233 (461)
T PRK05249 154 DVDFDHPRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTI 233 (461)
T ss_pred CCCCCCCeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEE
Confidence 77653 3678888888878899999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCC
Q 042564 260 HPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN 339 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 339 (498)
++++.+.++..+++++.+++.+|+++++|.|++|+|++||++.+.+++.+++++++|+|.||+++||+.|||||+|||++
T Consensus 234 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~ 313 (461)
T PRK05249 234 RHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIG 313 (461)
T ss_pred EECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCC
Confidence 99999999987766777777888889999999999999999987778899999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCce
Q 042564 340 RMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEK 419 (498)
Q Consensus 340 ~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (498)
.+++++.|.+||+++|+||++. .....+..+|+++|+.|++++||+||+||++.|+ ++.+....+....++...+.+.
T Consensus 314 ~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 391 (461)
T PRK05249 314 FPSLASASMDQGRIAAQHAVGE-ATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKV-PYEVGRARFKELARAQIAGDNV 391 (461)
T ss_pred CcccHhHHHHHHHHHHHHHcCC-CcccccCCCCeEEECCCcceEecCCHHHHHHcCC-CeEEEEEccccccceeecCCCC
Confidence 8889999999999999999964 3456678899999999999999999999999865 6777777787777776666778
Q ss_pred eEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 420 TVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 420 ~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 392 g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 454 (461)
T PRK05249 392 GMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAAL 454 (461)
T ss_pred cEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998877543
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-75 Score=596.78 Aligned_cols=446 Identities=28% Similarity=0.435 Sum_probs=400.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.|++||||||+|+.+|..|++.|.+|+||| +..+||+|+++||+|+|.++..++.....+....+|+...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e----------~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~ 71 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIE----------RDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFI 71 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEE----------ccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccc
Confidence 489999999999999999999999999999 5678999999999999999999998888888888887642
Q ss_pred --cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEE----EeCCEEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 104 --EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKI----VGPNEVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 104 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~----i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
....+||..+..+.....+.+...+...+++.+|+++.+++.+ ++++.+.|.+.+|+..++.||+||||||++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 72 DDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASP 151 (466)
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCC
Confidence 2457899999999998888888788888888999999999998 7788888887666545799999999999999
Q ss_pred CCCCCCCC--CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhC
Q 042564 178 QRAPIPGQ--ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255 (498)
Q Consensus 178 ~~p~i~g~--~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~ 255 (498)
..|+.++. +.+++.++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|+++
T Consensus 152 ~~~p~~~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~ 231 (466)
T PRK07845 152 RILPTAEPDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARR 231 (466)
T ss_pred CCCCCCCCCCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHC
Confidence 87765433 4477888888877789999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEec
Q 042564 256 GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVG 335 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~G 335 (498)
||++++++.+.+++.+++++.+.+.+|+++++|.|++++|++||++.+.+++.+++++++|+|.||+++||++|||||+|
T Consensus 232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~G 311 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAG 311 (466)
T ss_pred CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEe
Confidence 99999999999998766677777888889999999999999999998778889999999999999999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccccc
Q 042564 336 DVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISG 415 (498)
Q Consensus 336 D~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~ 415 (498)
||++.+++++.|..||+++++|+++....+..+..+|+.+|++|++++||+||+||+.+|+ ++.+....+....++...
T Consensus 312 D~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~ 390 (466)
T PRK07845 312 DCTGVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEV-PARTVMLPLATNPRAKMS 390 (466)
T ss_pred eccCCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCC-ceEEEEEecccCchhhhc
Confidence 9999999999999999999999997654455678899999999999999999999999865 577777677766666555
Q ss_pred CCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 416 RQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 416 ~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
..+++|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++
T Consensus 391 ~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 455 (466)
T PRK07845 391 GLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEA 455 (466)
T ss_pred CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHH
Confidence 66789999999999999999999999999999999999999999999999999999999987654
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-75 Score=598.87 Aligned_cols=447 Identities=30% Similarity=0.421 Sum_probs=392.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+||++||||||||+++|..|++.|.+|+|||+ ...+||+|+|+||+|+|.++..+...+.....+.+|+.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~---------~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~ 85 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEG---------ADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVE 85 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEc---------cCcceeEeccccccccHHHHHHHHHHHHHhhccccCcc
Confidence 469999999999999999999999999999993 34799999999999999999999888777666666765
Q ss_pred cccccccCHHHHHHHHHHHHHHHhH-HHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNG-IYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
.. .+.++|..+..+......++.. .+...++.. +++++.|++.+++++.+.|...+|+..+++||+||||||++|+.
T Consensus 86 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 164 (479)
T PRK14727 86 AV-APSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTI 164 (479)
T ss_pred cC-CCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCC
Confidence 32 4578999999888887776643 355556654 89999999999999999998777654579999999999999999
Q ss_pred CCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 180 APIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 180 p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
|++||.+. .++..+.+.....|++++|||+|++|+|+|..|.++|.+|+++++. .+++.+++++.+.+.+.+++.||
T Consensus 165 p~i~G~~~~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV 243 (479)
T PRK14727 165 PPIPGLMDTPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFREDPLLGETLTACFEKEGI 243 (479)
T ss_pred CCCCCcCccceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCC
Confidence 99999743 4566666666667899999999999999999999999999999885 67778999999999999999999
Q ss_pred EEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEeccc
Q 042564 258 NLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
++++++.+.++..+++.+.+.+.++ ++++|.||+|+|+.||+..+.++..|++++++|+|.||+++||++|||||+|||
T Consensus 244 ~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~ 322 (479)
T PRK14727 244 EVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDC 322 (479)
T ss_pred EEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeec
Confidence 9999999999987666666666665 589999999999999999877788899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCC
Q 042564 338 TNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ 417 (498)
Q Consensus 338 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (498)
++.+.+.+.|..||+++|.||++.. ...++..+|+++|++|++++||+||+||+..|+ ++.+....+....+++....
T Consensus 323 ~~~~~~~~~A~~~G~~aa~~i~g~~-~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~ 400 (479)
T PRK14727 323 SDLPQFVYVAAAAGSRAGINMTGGN-ATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGI-ETISRVLTMENVPRALANFE 400 (479)
T ss_pred CCcchhhhHHHHHHHHHHHHHcCCC-cccccccCCcEEEecCceeeeeCCHHHHHHcCC-ceEEEEEEcccCchhhhcCC
Confidence 9988899999999999999999754 345677789999999999999999999999876 67777777777767666556
Q ss_pred ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 418 EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 418 ~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+++|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 401 ~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~ 465 (479)
T PRK14727 401 TDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQ 465 (479)
T ss_pred CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999887654
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-75 Score=596.47 Aligned_cols=440 Identities=30% Similarity=0.514 Sum_probs=382.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+||++|||+||+|+.||.. ..|++|+||| +..+||+|+|+||+|+|.|+.+++..+.+++...||+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie----------~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 69 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVE----------KGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDA 69 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEe----------CCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeC
Confidence 5999999999999998654 4699999999 678999999999999999999999999998888888763
Q ss_pred ccccccCHHHHHHHHHH-HHHHHhHH-HHHHH--HhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTD-EILRLNGI-YKRLL--SNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
. ...+||..+++++.. ....+... ....+ ++.+|+++.|++++.+++.+.+ .+|+ +++||+||||||++|.
T Consensus 70 ~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~--~~g~--~~~~d~lIiATGs~p~ 144 (452)
T TIGR03452 70 E-IDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRT--GDGE--EITGDQIVIAAGSRPY 144 (452)
T ss_pred C-CCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEE--CCCc--EEEeCEEEEEECCCCC
Confidence 2 357899999999877 55554332 22222 3479999999999998877766 3444 7899999999999999
Q ss_pred CCCCCCCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 179 RAPIPGQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 179 ~p~i~g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
.|++.+.. .++++++++++.+.+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+ +.|
T Consensus 145 ~p~~~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~g 223 (452)
T TIGR03452 145 IPPAIADSGVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKK 223 (452)
T ss_pred CCCCCCCCCCEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcC
Confidence 88744322 367888888888889999999999999999999999999999999999888889999998887755 468
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecc
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD 336 (498)
|++++++.|.++..+++++.+++.+|+++++|.|++|+|++||++++++++.|++++++|+|.||+++||++|+|||+||
T Consensus 224 I~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD 303 (452)
T TIGR03452 224 WDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGD 303 (452)
T ss_pred CEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeec
Confidence 99999999999987666677777788889999999999999999998778899999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhCCCC-CCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccccc
Q 042564 337 VTNRMNLTPVALMEGTCFAKTVFGGQP-CKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISG 415 (498)
Q Consensus 337 ~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~ 415 (498)
|++.+++++.|.+||+++|+||++... ...++..+|+++|++|++++||+||+||+++|+ ++.+....+....+++..
T Consensus 304 ~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~-~~~~~~~~~~~~~~~~~~ 382 (452)
T TIGR03452 304 VSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGH-DITVKIQNYGDVAYGWAM 382 (452)
T ss_pred ccCcccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCC-CeEEEEecCCchhhHhhc
Confidence 999999999999999999999997643 346677899999999999999999999999865 677777777777776655
Q ss_pred CCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcC-cCCCCChhHHHHHHH
Q 042564 416 RQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDST-VGIHPSSAEEFVTMR 481 (498)
Q Consensus 416 ~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e~~~~~~ 481 (498)
..+.+|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.++ +|+|||++|.+.++.
T Consensus 383 ~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~ 449 (452)
T TIGR03452 383 EDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENAL 449 (452)
T ss_pred CCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHH
Confidence 677899999999999999999999999999999999999999999999996 789999999987643
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-75 Score=596.33 Aligned_cols=445 Identities=29% Similarity=0.446 Sum_probs=390.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhh-cCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDAR-SYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~-~~g~ 100 (498)
.+|||+||||||||++||..|++.|++|+||| ++.+||+|+|+||+|+|.++..+......+... .+|+
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie----------~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~ 74 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIE----------RGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGL 74 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEE----------ccccccceecCCccccHHHHHHHHHHHHHhhccccCCc
Confidence 46999999999999999999999999999999 667999999999999999999988777666544 3455
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHH-HHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGI-YKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
... .+.++|..++.+.+.....+... +...+.+. +++++.+++.++|++.+.|.+.+|...+++||+||||||++|+
T Consensus 75 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~ 153 (468)
T PRK14694 75 SAQ-APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA 153 (468)
T ss_pred ccC-CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC
Confidence 422 35789999999988877766543 44555544 8999999999999999999887765457999999999999999
Q ss_pred CCCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 179 RAPIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 179 ~p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
.|++||.+. .+++++...+...+++++|||+|++|+|+|..|+++|.+|+++++ +++++.+++++.+.+.+.+++.|
T Consensus 154 ~p~i~G~~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~G 232 (468)
T PRK14694 154 EPPVPGLAETPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREG 232 (468)
T ss_pred CCCCCCCCCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCC
Confidence 999999753 466777777777789999999999999999999999999999987 46778899999999999999999
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecc
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD 336 (498)
|++++++.+.++..+++.+.+.+.++ ++++|.|++|+|++||.+++.+++++++. ++|+|.||+++||++|||||+||
T Consensus 233 I~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~GD 310 (468)
T PRK14694 233 IEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAGD 310 (468)
T ss_pred CEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEEEee
Confidence 99999999999987665555665554 69999999999999999987677788886 47899999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccC
Q 042564 337 VTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGR 416 (498)
Q Consensus 337 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
|++.+.+.+.|..||++||.||++.. ...++..+|.++|++|++++||+||+||+.+|+ ++.+...++....+++...
T Consensus 311 ~~~~~~~~~~A~~~G~~aa~~i~~~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~ 388 (468)
T PRK14694 311 CTDQPQFVYVAAAGGSRAAINMTGGD-ASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGY-DTDSRTLDLENVPRALVNF 388 (468)
T ss_pred cCCCcccHHHHHHHHHHHHHHhcCCC-cccccCCCCeEEECCCCeEEeeCCHHHHHHcCC-ceEEEEEecccchhhhhcC
Confidence 99999999999999999999999753 456677899999999999999999999999876 6777777887777777666
Q ss_pred CceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 417 QEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 417 ~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
.+.+|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 389 ~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 454 (468)
T PRK14694 389 DTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQ 454 (468)
T ss_pred CCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999887554
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-74 Score=590.34 Aligned_cols=450 Identities=32% Similarity=0.512 Sum_probs=394.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|...|||+||||||||++||++|++.|++|+||| +..+||+|++.||+|+|.++..++....+.....+|
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 70 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVE----------KGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFG 70 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEE----------ccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcC
Confidence 4567999999999999999999999999999999 568999999999999999999998888877777787
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCC-------EEEEEeCCCceEEEEcCeEEEc
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN-------EVEVTQLDGTKLSYSAKHILIA 172 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~-------~~~v~~~~g~~~~~~~d~liiA 172 (498)
+... .+.++|..+..+++..++.+.......+++.+++++.+++.+++++ ++.|.+.+|+...++||+||||
T Consensus 71 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViA 149 (472)
T PRK05976 71 ISVS-GPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIA 149 (472)
T ss_pred ccCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEe
Confidence 7643 3578999999999988888887788888889999999999999998 8889877764458999999999
Q ss_pred CCCCCCCCCCCCC--CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHH
Q 042564 173 TGSRAQRAPIPGQ--ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVAR 250 (498)
Q Consensus 173 tG~~p~~p~i~g~--~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~ 250 (498)
||++|..++.... ..++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+
T Consensus 150 TGs~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~ 229 (472)
T PRK05976 150 TGSRPVELPGLPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVAR 229 (472)
T ss_pred CCCCCCCCCCCCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHH
Confidence 9999975432222 23678888888777899999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEcCccEEEEEEe-CCe-EEEEECCC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKS-EEG-VKVITDHG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRT 326 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~-~~~-~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t 326 (498)
.+++.||++++++.|.++..+ +++ ..+.+.+| +++++|.+++|+|++|+++.+.++..++..+ +|+|.||++++|
T Consensus 230 ~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~-~g~i~Vd~~l~t 308 (472)
T PRK05976 230 LLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVE-GGFIQIDDFCQT 308 (472)
T ss_pred HHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceec-CCEEEECCCccc
Confidence 999999999999999999752 333 33344566 3699999999999999998766677777764 689999999999
Q ss_pred CCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEec
Q 042564 327 NVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSF 406 (498)
Q Consensus 327 ~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~ 406 (498)
+.|+|||+|||++.+++++.|.+||+++|+||++......++..+|..+|++|+++++|++|+||++.|+ ++.+....+
T Consensus 309 s~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~-~~~~~~~~~ 387 (472)
T PRK05976 309 KERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGY-DVKVGKFPF 387 (472)
T ss_pred CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCC-CEEEEEEEC
Confidence 9999999999998888999999999999999998654556677799999999999999999999999865 677777778
Q ss_pred CCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 407 NPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
....++.....+++|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 388 ~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 463 (472)
T PRK05976 388 AANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAAL 463 (472)
T ss_pred CcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHH
Confidence 7777776566789999999999999999999999999999999999999999999999999999999999876543
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-74 Score=590.12 Aligned_cols=443 Identities=35% Similarity=0.535 Sum_probs=389.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
|||+||||||||++||..|++.|++|+||| +..+||+|+|+||+|+|.++..+...+...+. .||+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie----------~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~-~~g~~~- 68 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVE----------RGPLGGTCVNVGCVPSKMLLRAAEVAHYARKP-PFGGLA- 68 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEe----------CCcccCCeeeecEEccHHHHHHHHHHHHhhcc-Cccccc-
Confidence 799999999999999999999999999999 56699999999999999999998877766653 466543
Q ss_pred cccccCHHHHHHHHHHHHHHHhH-HHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNG-IYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
....++|..++.++++....+.. .+...+++.+++++.+++.+++++.+.+. +| ...++||+||||||++|+.|++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~--~g-~~~~~~~~lIiATGs~p~~p~i 145 (463)
T TIGR02053 69 ATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVD--LG-REVRGAKRFLIATGARPAIPPI 145 (463)
T ss_pred CCCccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEc--CC-eEEEEeCEEEEcCCCCCCCCCC
Confidence 24578999999998888877654 36677888899999999999888877663 33 2368999999999999999999
Q ss_pred CCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 183 PGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 183 ~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
||.+. ++++++++.+...+++++|||+|.+|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+++.||+++
T Consensus 146 ~G~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 225 (463)
T TIGR02053 146 PGLKEAGYLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVV 225 (463)
T ss_pred CCcccCceECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEE
Confidence 99754 6778888877777899999999999999999999999999999999999998999999999999999999999
Q ss_pred cCccEEEEEEeCCeEEEEEC---CCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEeccc
Q 042564 261 PRTTIKELIKSEEGVKVITD---HGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~~---~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
+++.|.++..+++...+.+. +++++++|.|++|+|++|+.+.+.++..+++++++|+|.||+++||++|||||+|||
T Consensus 226 ~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~ 305 (463)
T TIGR02053 226 TSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV 305 (463)
T ss_pred cCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeec
Confidence 99999999876555555543 235799999999999999999666788899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCC
Q 042564 338 TNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ 417 (498)
Q Consensus 338 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (498)
++.+.+++.|.+||+++|+||++......++..+|.++|++|++++||+||++|+++|+ ++.+....+....++.....
T Consensus 306 ~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~ 384 (463)
T TIGR02053 306 TGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGI-ECDCRTLPLTNVPRARINRD 384 (463)
T ss_pred CCCcccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCC-CeEEEEEecccchHHHhcCC
Confidence 99988999999999999999997534456667799999999999999999999999866 67777777777667655567
Q ss_pred ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 418 EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 418 ~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+++|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 385 ~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~ 449 (463)
T TIGR02053 385 TRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQ 449 (463)
T ss_pred CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999998877554
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-74 Score=586.60 Aligned_cols=443 Identities=29% Similarity=0.484 Sum_probs=394.4
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc-
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH- 103 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~- 103 (498)
+|+||||||||++||.+|++.|++|+||| +..+||+|+|+||+|+|.++..++..+..+....+|+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie----------~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~ 71 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLID----------EADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPN 71 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEE----------CCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccC
Confidence 79999999999999999999999999999 6779999999999999999999998888888888888643
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP 183 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i~ 183 (498)
....+||..+..+.+...+++....+..+.+.+++++.|++.+++++.+.|...++ ..+++||+||||||++|+.|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~-~~~~~~d~lviATGs~p~~~p~~ 150 (458)
T PRK06912 72 GSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDK-EEVVDAEQFIIAAGSEPTELPFA 150 (458)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCC-cEEEECCEEEEeCCCCCCCCCCC
Confidence 34578999999999998888887788888888999999999999999999977554 34799999999999999888887
Q ss_pred CCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEc
Q 042564 184 GQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 184 g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
+.+ .++++++.+.+...|++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.|++.||++++
T Consensus 151 ~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~ 230 (458)
T PRK06912 151 PFDGKWIINSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFT 230 (458)
T ss_pred CCCCCeEEcchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEE
Confidence 753 367888888888889999999999999999999999999999999999999989999999999999999999999
Q ss_pred CccEEEEEEeCCeEEEEECCC-eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC
Q 042564 262 RTTIKELIKSEEGVKVITDHG-EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR 340 (498)
Q Consensus 262 ~~~v~~i~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 340 (498)
++.|.++..++..+.+...++ +++++|.|++|+|++|+.+.++++..++.++++| |.||+++||+.|||||+|||++.
T Consensus 231 ~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~ 309 (458)
T PRK06912 231 GAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGG 309 (458)
T ss_pred CCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCC
Confidence 999999976655444443322 3699999999999999999877788899988766 99999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCcee
Q 042564 341 MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT 420 (498)
Q Consensus 341 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
+++++.|.+||+++|.++++.+ ...++..+|.++|++|++++||+||+||+++++ ++.+....|....+++....+.+
T Consensus 310 ~~la~~A~~~g~~aa~~~~g~~-~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~g 387 (458)
T PRK06912 310 IQLAHVAFHEGTTAALHASGED-VKVNYHAVPRCIYTSPEIASVGLTEKQAREQYG-DIRIGEFPFTANGKALIIGEQTG 387 (458)
T ss_pred cccHHHHHHHHHHHHHHHcCCC-CCCCcCCCCeEEecCchhEEeeCCHHHHHHCCC-CeEEEEEecCcchhHhhcCCCce
Confidence 9999999999999999999753 345577899999999999999999999999855 67777767777777766667889
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 421 ~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
|+||++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++++|||++|.+.++.
T Consensus 388 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 448 (458)
T PRK06912 388 KVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEAL 448 (458)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988754
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=588.15 Aligned_cols=444 Identities=38% Similarity=0.616 Sum_probs=396.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||++||..|++.|++|+|+| +..+||+|.++||+|+|.++..+...........||+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE----------~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~ 72 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVE----------KEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIK 72 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEe----------ccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcc
Confidence 46999999999999999999999999999999 55599999999999999999999888888888888876
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
.. ...++|..+.++.+...+.+...+...+++.+|+++.+++.+++++.+.|...++. ..++||+||||||++|..|+
T Consensus 73 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~-~~~~~d~lViAtGs~p~~~p 150 (462)
T PRK06416 73 AE-NVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGE-QTYTAKNIILATGSRPRELP 150 (462)
T ss_pred cC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEeCCCCCCCCC
Confidence 43 45789999999999888888777888888899999999999999999988754432 47999999999999997653
Q ss_pred CCCCC----cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 182 IPGQE----LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 182 i~g~~----~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
|.+ .++++++...+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+++.||
T Consensus 151 --g~~~~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV 228 (462)
T PRK06416 151 --GIEIDGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGI 228 (462)
T ss_pred --CCCCCCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCC
Confidence 432 35688888887778899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccEEEEEEeCCeEEEEECCC---eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEe
Q 042564 258 NLHPRTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAV 334 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~ 334 (498)
++++++.|.++..+++.+.+.+.++ +++++|.||+|+|++|+.+++.+++.+++++ +|+|.||+++||++|+|||+
T Consensus 229 ~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAi 307 (462)
T PRK06416 229 KIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAI 307 (462)
T ss_pred EEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEe
Confidence 9999999999987766677776665 6799999999999999999877788999998 79999999999999999999
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccc
Q 042564 335 GDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTIS 414 (498)
Q Consensus 335 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 414 (498)
|||++.+++++.|.+||+++|+||++.. ...++..+|..+|++|+++++|+||+||+.+|+ ++.+....+....++..
T Consensus 308 GD~~~~~~~~~~A~~~g~~aa~ni~~~~-~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~-~~~~~~~~~~~~~~~~~ 385 (462)
T PRK06416 308 GDIVGGPMLAHKASAEGIIAAEAIAGNP-HPIDYRGIPAVTYTHPEVASVGLTEAKAKEEGF-DVKVVKFPFAGNGKALA 385 (462)
T ss_pred eecCCCcchHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCCceEEEeCCHHHHHhcCC-CeEEEEEecCcChHhHh
Confidence 9999888899999999999999999743 445577899999999999999999999999866 67788777777676665
Q ss_pred cCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 415 GRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 415 ~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
...+++|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 386 ~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 453 (462)
T PRK06416 386 LGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAAL 453 (462)
T ss_pred cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999876543
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-73 Score=601.87 Aligned_cols=446 Identities=29% Similarity=0.445 Sum_probs=389.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhc-CCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARS-YGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~-~g~ 100 (498)
.+|||+||||||||++||..|++.|++|+||| +..+||+|+|+||+|+|.++..+........... +|+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie----------~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~ 166 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIE----------RGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGI 166 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEe----------cCcceeeccccCccccHHHHHHHHHHHHHhcccccCCc
Confidence 36999999999999999999999999999999 5689999999999999999999887776654432 466
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhH-HHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNG-IYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
... .+.++|..+..+....+.++.. .+...+... +|+++.+++.+++++.+.|...+|+...++||+||||||++|.
T Consensus 167 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~ 245 (561)
T PRK13748 167 AAT-VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA 245 (561)
T ss_pred cCC-CCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC
Confidence 432 4568999999988877776654 244556665 8999999999999999999876664457999999999999999
Q ss_pred CCCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 179 RAPIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 179 ~p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
.|++||.+. +++..+.+.....+++++|||+|++|+|+|..|.++|.+|+++++. .+++.+|+++.+.+.+.|++.|
T Consensus 246 ~p~i~g~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~g 324 (561)
T PRK13748 246 VPPIPGLKETPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEG 324 (561)
T ss_pred CCCCCCCCccceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccccCHHHHHHHHHHHHHCC
Confidence 999999764 5666666666667899999999999999999999999999999985 5677789999999999999999
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecc
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD 336 (498)
|++++++.+.++..+++.+.+.+.++ ++++|.|++|+|++||+..+.+++.|++++++|+|.||+++||++|||||+||
T Consensus 325 I~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD 403 (561)
T PRK13748 325 IEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGD 403 (561)
T ss_pred CEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeee
Confidence 99999999999987666666666555 59999999999999999987778899999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccC
Q 042564 337 VTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGR 416 (498)
Q Consensus 337 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
|++.+.+.+.|..||++||.||++.. ...++..+|..+|++|++++||+||++|+++|+ ++.+....+....+++...
T Consensus 404 ~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~ 481 (561)
T PRK13748 404 CTDQPQFVYVAAAAGTRAAINMTGGD-AALDLTAMPAVVFTDPQVATVGYSEAEAHHDGI-ETDSRTLTLDNVPRALANF 481 (561)
T ss_pred cCCCccchhHHHHHHHHHHHHHcCCC-cccCCCCCCeEEEccCCceeeeCCHHHHHHcCC-CeEEEEEecccCchhhhcC
Confidence 99999999999999999999999754 345677889999999999999999999999866 5777777777777766655
Q ss_pred CceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 417 QEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 417 ~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
..++|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 482 ~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 547 (561)
T PRK13748 482 DTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQ 547 (561)
T ss_pred CCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999887554
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-74 Score=590.53 Aligned_cols=456 Identities=36% Similarity=0.604 Sum_probs=386.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCC
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYG 99 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g 99 (498)
+.+|||+||||||||++||..|++.|++|+|||+.... ....+..+||+|+|+||+|+|+++..+......+ ....||
T Consensus 3 ~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~-~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPS-TQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCC-CccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 34699999999999999999999999999999931000 0011225899999999999999999988877665 345677
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+... . .++|..+.++....+.++...+...++..+|+++.+.+.+.+++.+.+... +....++||+||||||++|+.
T Consensus 82 ~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~-~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 82 WKTS-S-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDN-SQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CCCC-C-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeC-CCceEEECCEEEEecCCCCCC
Confidence 7543 2 789999999999998888777777777789999999999999988887642 223479999999999999998
Q ss_pred CC-CCCCC-cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 180 AP-IPGQE-LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 180 p~-i~g~~-~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
|+ +||.+ ..+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++.+. .+++.+|+++.+.+.+.|++.||
T Consensus 159 p~~i~G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV 237 (499)
T PTZ00052 159 PEDVPGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGT 237 (499)
T ss_pred CCCCCCccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCC
Confidence 85 89875 45788888888778899999999999999999999999999999884 66788999999999999999999
Q ss_pred EEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEeccc
Q 042564 258 NLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
++++++.+.++...++.+.+.+.+|+++++|.|++++|++||++++.++..+++++++|++.+++. +|++|+|||+|||
T Consensus 238 ~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv 316 (499)
T PTZ00052 238 LFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDV 316 (499)
T ss_pred EEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEe
Confidence 999999999998765566777888888999999999999999998877889999999998877777 9999999999999
Q ss_pred CC-CCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCcccccc
Q 042564 338 TN-RMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISG 415 (498)
Q Consensus 338 ~~-~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~~~~ 415 (498)
+. .+.+++.|.+||+++|+||++......++..+|+++|++|++++||+||+||++. ++..+.++...+.....+...
T Consensus 317 ~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (499)
T PTZ00052 317 VEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVH 396 (499)
T ss_pred cCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhccc
Confidence 95 5789999999999999999986655677888999999999999999999999987 333566666666443322111
Q ss_pred C---------------CceeEEEEEEEC-CCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHH
Q 042564 416 R---------------QEKTVMKLVVDA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479 (498)
Q Consensus 416 ~---------------~~~~~~kl~~~~-~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 479 (498)
. .+++|+|+++++ ++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~~ 476 (499)
T PTZ00052 397 REKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFMN 476 (499)
T ss_pred cccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhEE
Confidence 1 257899999997 489999999999999999999999999999999999999999999998876
Q ss_pred HHH
Q 042564 480 MRS 482 (498)
Q Consensus 480 ~~~ 482 (498)
+..
T Consensus 477 ~~~ 479 (499)
T PTZ00052 477 LSV 479 (499)
T ss_pred EEe
Confidence 543
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-73 Score=581.62 Aligned_cols=431 Identities=30% Similarity=0.509 Sum_probs=375.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+||||||||++||+.|++.|++|+|||+ . ...+||+|.+.||+|+|.+++.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~------~--~~~~GG~~~~~gcip~k~l~~~~~--------------- 59 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQ------S--NAMYGGTCINIGCIPTKTLVHDAQ--------------- 59 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcC------C--CCccceeEeeccccchHHHHHHhc---------------
Confidence 59999999999999999999999999999993 1 125799999999999998876542
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHH-HHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIY-KRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
...+|.....+.+.....+.... ..+.+..+++++.+++.+++++.+.|...++. .++.||+||||||++|..|+
T Consensus 60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~-~~~~~d~lviATGs~p~~p~ 135 (441)
T PRK08010 60 ---QHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGN-LEIHGEKIFINTGAQTVVPP 135 (441)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCe-EEEEeCEEEEcCCCcCCCCC
Confidence 13567777766665555444322 23334459999999999999999999876653 46999999999999999999
Q ss_pred CCCCC---cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 182 IPGQE---LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 182 i~g~~---~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
+||.+ .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+++.||+
T Consensus 136 i~G~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~ 215 (441)
T PRK08010 136 IPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVD 215 (441)
T ss_pred CCCccCCCCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCE
Confidence 99974 367778787777788999999999999999999999999999999999999989999999999999999999
Q ss_pred EEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccC
Q 042564 259 LHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~ 338 (498)
+++++.|.++..+++.+.+..+++ ++++|.|++|+|++||++.+.+++.|++++++|+|.||+++||++|||||+|||+
T Consensus 216 v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~ 294 (441)
T PRK08010 216 IILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVT 294 (441)
T ss_pred EEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecC
Confidence 999999999987666666666555 4899999999999999998777888999998899999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhCC-CCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCC
Q 042564 339 NRMNLTPVALMEGTCFAKTVFGG-QPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ 417 (498)
Q Consensus 339 ~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (498)
+.+++.+.|..||+++++||++. .....++..+|+++|++|++++||+||+||+++|+ ++.+...++....++...+.
T Consensus 295 ~~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~ 373 (441)
T PRK08010 295 GGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGA-DIQVVTLPVAAIPRARVMND 373 (441)
T ss_pred CCccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCC-CeEEEEEecCcChhhhhcCC
Confidence 99999999999999999999975 33345677899999999999999999999999866 68888888888777766677
Q ss_pred ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 418 EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 418 ~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+.+|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+.+++|||++|.+.++..
T Consensus 374 ~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 438 (441)
T PRK08010 374 TRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 (441)
T ss_pred CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999887654
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-73 Score=581.05 Aligned_cols=454 Identities=29% Similarity=0.500 Sum_probs=390.6
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhh-hcC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDA-RSY 98 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~-~~~ 98 (498)
|+.+||++||||||||++||++|++.|.+|+|||+.. . ......+||+|.|.||+|+|.++..++....+.+. ..+
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~-~--~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~ 77 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWK-N--PKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH 77 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEeccc-C--CCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence 3456999999999999999999999999999999300 0 00125789999999999999999998887766654 667
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe----CCEEEEEeCCCceEEEEcCeEEEcCC
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG----PNEVEVTQLDGTKLSYSAKHILIATG 174 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~----~~~~~v~~~~g~~~~~~~d~liiAtG 174 (498)
|.... ...+||..++.+++.....+...+...++..+|+++.+++.+++ ...+.+...++ .+++||+||||||
T Consensus 78 G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~--~~~~~d~lViATG 154 (475)
T PRK06327 78 GIHVD-GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDE--TVITAKHVIIATG 154 (475)
T ss_pred CccCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCC--eEEEeCEEEEeCC
Confidence 76643 35789999999999888888888888888899999999999887 55666643333 3799999999999
Q ss_pred CCCCCCC-CCCC-CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHH
Q 042564 175 SRAQRAP-IPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNL 252 (498)
Q Consensus 175 ~~p~~p~-i~g~-~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l 252 (498)
++|+.++ ++.. ..++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+
T Consensus 155 s~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l 234 (475)
T PRK06327 155 SEPRHLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAF 234 (475)
T ss_pred CCCCCCCCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHH
Confidence 9997554 3322 2366778888777789999999999999999999999999999999999988889999999999999
Q ss_pred HhCCCEEEcCccEEEEEEeCCeEEEEECC--C--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCC
Q 042564 253 EGRGINLHPRTTIKELIKSEEGVKVITDH--G--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNV 328 (498)
Q Consensus 253 ~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~ 328 (498)
++.||++++++.|.++..+++.+.+.+.+ | +.+++|.+++|+|++|+++.+.++..+++++++|+|.||++++|++
T Consensus 235 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~ 314 (475)
T PRK06327 235 TKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNV 314 (475)
T ss_pred HHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCC
Confidence 99999999999999998776666666544 3 4699999999999999999776788899999999999999999999
Q ss_pred CCeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCC
Q 042564 329 PSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNP 408 (498)
Q Consensus 329 ~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~ 408 (498)
|+|||+|||+..+++++.|..||+.+|+||++.. ...++..+|+.+|++|++++||+||++|+++|+ ++.+....+..
T Consensus 315 ~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~-~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~-~~~~~~~~~~~ 392 (475)
T PRK06327 315 PNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK-GHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGV-EYKAGKFPFMA 392 (475)
T ss_pred CCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCC-CEEEEEEcccc
Confidence 9999999999988899999999999999999753 345677899999999999999999999999866 67777777776
Q ss_pred CccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 409 MRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 409 ~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
..++.....+.+|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++.
T Consensus 393 ~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 465 (475)
T PRK06327 393 NGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAA 465 (475)
T ss_pred cchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHH
Confidence 6666656677899999999999999999999999999999999999999999999999999999999988654
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-72 Score=580.06 Aligned_cols=441 Identities=34% Similarity=0.500 Sum_probs=388.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
++|||+||||||||++||..|++.|++|+||| +..+||+|+++||+|+|.+++.+...........+|+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~ 71 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIE----------KGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIH 71 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEe----------CCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45999999999999999999999999999999 66789999999999999999999888888888888876
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHH-HHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIY-KRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.. ...++|..++.+.......+...+ ...+...+++++.+.+.+++++.+.+ +++ .++||+||||||+. .|
T Consensus 72 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v---~~~--~~~~d~lIiATGs~--~p 143 (460)
T PRK06292 72 AD-GPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV---NGE--RIEAKNIVIATGSR--VP 143 (460)
T ss_pred cC-CCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE---CcE--EEEeCEEEEeCCCC--CC
Confidence 43 257899999999888887776655 55667789999999999999988777 443 79999999999998 44
Q ss_pred CCCCCC-----cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhC
Q 042564 181 PIPGQE-----LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255 (498)
Q Consensus 181 ~i~g~~-----~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~ 255 (498)
++||.+ .++++++.+.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+.+.++++
T Consensus 144 ~ipg~~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~ 223 (460)
T PRK06292 144 PIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE 223 (460)
T ss_pred CCCCCcccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc
Confidence 455542 356778888788889999999999999999999999999999999999999889999999999999999
Q ss_pred CCEEEcCccEEEEEEeCC-eEEEEECCC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeE
Q 042564 256 GINLHPRTTIKELIKSEE-GVKVITDHG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIW 332 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~-~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iy 332 (498)
|++++++.+.+++.+++ .+.++..++ +++++|.|++|+|++||++.+.++..+++++++|+|.||+++||++||||
T Consensus 224 -I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~Iy 302 (460)
T PRK06292 224 -FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIY 302 (460)
T ss_pred -cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEE
Confidence 99999999999976554 344433333 47999999999999999998778889999999999999999999999999
Q ss_pred EecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccc
Q 042564 333 AVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNT 412 (498)
Q Consensus 333 a~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~ 412 (498)
|+|||++.+++++.|.+||+++|.||++.......+..+|+.+|++|++++||+||+||++.|+ ++.+....+....++
T Consensus 303 A~GD~~~~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~-~~~~~~~~~~~~~~~ 381 (460)
T PRK06292 303 AAGDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGI-DYVVGEVPFEAQGRA 381 (460)
T ss_pred EEEecCCCccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCC-CeEEEEEecccchHH
Confidence 9999999888999999999999999997534445677899999999999999999999999865 677777778777777
Q ss_pred cccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 413 ISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 413 ~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
.....+++|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 382 ~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 451 (460)
T PRK06292 382 RVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALR 451 (460)
T ss_pred HhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHH
Confidence 6566788999999999999999999999999999999999999999999999999999999999987654
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-71 Score=567.61 Aligned_cols=430 Identities=32% Similarity=0.498 Sum_probs=376.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+||||||||++||..|++.|++|+|||+ .+ ..+||+|++.||+|+|.++..++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~------~~--~~~GG~c~~~gciP~k~~~~~~~~-------------- 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEE------SK--AMYGGTCINIGCIPTKTLLVAAEK-------------- 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEec------CC--cccceeeecCccccchHhhhhhhc--------------
Confidence 59999999999999999999999999999993 11 137999999999999999876541
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
.++|..+..+.+....++.......+.+.+|+++.+++.+++++++.+...+ ...++.||+||||||++|+.|++
T Consensus 61 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~-~~~~~~~d~vViATGs~~~~p~i 135 (438)
T PRK07251 61 ----NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGD-EKIELTAETIVINTGAVSNVLPI 135 (438)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCC-CcEEEEcCEEEEeCCCCCCCCCC
Confidence 3477888877777777766666677888899999999999988888876422 23479999999999999999999
Q ss_pred CCCC---cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEE
Q 042564 183 PGQE---LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 183 ~g~~---~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 259 (498)
||.+ .++++.++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++..++++.+.+.+.+++.||++
T Consensus 136 ~G~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i 215 (438)
T PRK07251 136 PGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITF 215 (438)
T ss_pred CCcCCCCcEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEE
Confidence 9973 3678888888777899999999999999999999999999999999999998899999999999999999999
Q ss_pred EcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCC
Q 042564 260 HPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN 339 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 339 (498)
++++.|.++..+++.+.+.. +++++++|.+|+|+|++|+.+.+++++.++.++++|+|.||+++||++|||||+|||++
T Consensus 216 ~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~ 294 (438)
T PRK07251 216 LLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNG 294 (438)
T ss_pred EcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCC
Confidence 99999999987655555543 56689999999999999999987777788988888999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCC-CCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCc
Q 042564 340 RMNLTPVALMEGTCFAKTVFGGQP-CKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQE 418 (498)
Q Consensus 340 ~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
.+.+.+.|..+|++++.++++.+. ....+..+|+.+|++|+++++|+||+||++.|+ ++.+....+....++......
T Consensus 295 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~ 373 (438)
T PRK07251 295 GPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGL-PYAVKELLVAAMPRAHVNNDL 373 (438)
T ss_pred CcccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCC-CeEEEEEECCcchhhhhcCCC
Confidence 989999999999999999987643 223556799999999999999999999999865 677777777777776556667
Q ss_pred eeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 419 KTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 419 ~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
++|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++.
T Consensus 374 ~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 374 RGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999987754
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=566.33 Aligned_cols=447 Identities=36% Similarity=0.589 Sum_probs=398.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+||||||||++||++|++.|++|+||| +..+||+|.+.||+|+|.++..++....+.....+++..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie----------~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~ 70 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVE----------KEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEV 70 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCC
Confidence 3899999999999999999999999999999 667899999999999999999998887777777777654
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
. ...++|..+..+......++...+...+++.+++++.+++.+++++.+.+...++. .+++||+||+|||++|+.|++
T Consensus 71 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~-~~~~~d~lVlAtG~~p~~~~~ 148 (461)
T TIGR01350 71 E-NVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGE-ETLTAKNIIIATGSRPRSLPG 148 (461)
T ss_pred C-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEcCCCCCCCCCC
Confidence 3 35789999999888888888888888888899999999999999999988775542 479999999999999998887
Q ss_pred C-CCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEE
Q 042564 183 P-GQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 183 ~-g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 259 (498)
| +.+ .++++++.+.+...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++.+++++.+.+.+.+++.||++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i 228 (461)
T TIGR01350 149 PFDFDGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKI 228 (461)
T ss_pred CCCCCCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 6 433 3778888888878899999999999999999999999999999999999999899999999999999999999
Q ss_pred EcCccEEEEEEeCCeEEEEECCC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEeccc
Q 042564 260 HPRTTIKELIKSEEGVKVITDHG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
++++.|.++..+++++.+.+.+| +++++|.+|+|+|+.|+.+.+.+++.++.++++|+|.||+++||++|+|||+|||
T Consensus 229 ~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~ 308 (461)
T TIGR01350 229 LTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDV 308 (461)
T ss_pred EeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeec
Confidence 99999999987777777776666 4799999999999999998655788899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCC
Q 042564 338 TNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ 417 (498)
Q Consensus 338 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (498)
+..+++++.|.+||+.+|+||.+......++..+|...|++|+++.+|++|++|+.+|+ ++.+....+....++.....
T Consensus 309 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~ 387 (461)
T TIGR01350 309 IGGPMLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEAGY-DVKIGKFPFAANGKALALGE 387 (461)
T ss_pred CCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhCCC-CeEEEEEeCccchHHHhcCC
Confidence 99888999999999999999997654355677899999999999999999999999865 67777777766666655567
Q ss_pred ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 418 EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 418 ~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+++|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+..+..
T Consensus 388 ~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~ 452 (461)
T TIGR01350 388 TDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAAL 452 (461)
T ss_pred CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999876543
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-71 Score=503.81 Aligned_cols=458 Identities=42% Similarity=0.713 Sum_probs=409.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
...+||++|||||.+||+||.+++..|.+|.++|-= .+.+...++++||+|+|.||||+|.|-.++-+.+.+.+...||
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV-~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV-KPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec-ccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 345799999999999999999999999999999910 0112334689999999999999999999998899999999999
Q ss_pred ccccc-ccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 100 WEVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
|.... ....||..+....+..+..++-.++-.+++..|+++...+.|++++++..+..+|+...++++.++||||.+|+
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPr 174 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPR 174 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCC
Confidence 99876 57889999999999998888777777788889999999999999999999988887788999999999999999
Q ss_pred CCCCCCC-CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 179 RAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 179 ~p~i~g~-~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
.|.|||. ++.+|++|++.+...|.+-+|||+|++++|+|.+|+.+|.+|++..|+ -+++.||+++++.+.+.++++||
T Consensus 175 Yp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~Gi 253 (503)
T KOG4716|consen 175 YPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEERGI 253 (503)
T ss_pred CCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-eecccccHHHHHHHHHHHHHhCC
Confidence 9999995 778999999999999999999999999999999999999999999995 46788999999999999999999
Q ss_pred EEEcCccEEEEEEeCCe-EEEEEC---CCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCC-CCCeEcCCCCCCCCCC
Q 042564 258 NLHPRTTIKELIKSEEG-VKVITD---HGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQ-TGAVKVDENSRTNVPS 330 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~-~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~-~g~i~vd~~~~t~~~~ 330 (498)
++.....+.+++.-+++ +.|... .++ +-.+|.|+||+|+.+.++.++|++.|+++++ .|.|.+|+.-+||+|+
T Consensus 254 kf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~ 333 (503)
T KOG4716|consen 254 KFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPY 333 (503)
T ss_pred ceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCc
Confidence 99999888888776655 444432 222 3568999999999999999999999999964 6789999999999999
Q ss_pred eEEecccCCC-CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCC
Q 042564 331 IWAVGDVTNR-MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNP 408 (498)
Q Consensus 331 iya~GD~~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~ 408 (498)
|||+||.... +.+++.|++.|+.+|+.++++.....+|..+|+.+||..+++.+||+|++|.+. |-+++++++..|.+
T Consensus 334 vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f~P 413 (503)
T KOG4716|consen 334 VYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKP 413 (503)
T ss_pred eEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEEeeccccc
Confidence 9999999964 899999999999999999998888899999999999999999999999999986 33489999999999
Q ss_pred CccccccCCc-eeEEEEEEEC-CCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHH
Q 042564 409 MRNTISGRQE-KTVMKLVVDA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479 (498)
Q Consensus 409 ~~~~~~~~~~-~~~~kl~~~~-~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 479 (498)
+.+.++.++. .-|+|.+.+. ++.+|+|.|++||+|.|+++.|+.|++.++|..||.+++.+|||.+|.+..
T Consensus 414 ~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~Ft~ 486 (503)
T KOG4716|consen 414 LEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFTT 486 (503)
T ss_pred eEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccchhheeE
Confidence 9998766543 4599999885 467999999999999999999999999999999999999999999998764
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=462.98 Aligned_cols=403 Identities=19% Similarity=0.280 Sum_probs=309.5
Q ss_pred cEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCc-hhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 25 DLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGC-VPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+|||||||+||+.||.+|++. +.+|+|||++.. .. +..| +|. ..+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~------~~-------~~~~~lp~----~~~--------------- 50 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD------MS-------FANCALPY----YIG--------------- 50 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC------cc-------cccCCcch----hhc---------------
Confidence 799999999999999999885 689999994211 11 1111 121 000
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEE-eEEEEEeCCEEEEEeCC---CceEEEEcCeEEEcCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE-GEGKIVGPNEVEVTQLD---GTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~-~~~~~i~~~~~~v~~~~---g~~~~~~~d~liiAtG~~p 177 (498)
+ ....+...+.. ..+.+..+.++++.. .++..+|+....|...+ ++..+++||+||||||++|
T Consensus 51 --~-~~~~~~~~~~~----------~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 51 --E-VVEDRKYALAY----------TPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred --C-ccCCHHHcccC----------CHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence 0 00000000000 011233456899876 45778887665554432 2334579999999999999
Q ss_pred CCCCCCCCCccc---ChHHHhcc-----ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHH
Q 042564 178 QRAPIPGQELAI---TSDEALSL-----EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA 249 (498)
Q Consensus 178 ~~p~i~g~~~~~---~~~~~~~l-----~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~ 249 (498)
+.|++++. .++ +..+...+ ...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.
T Consensus 118 ~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~ 196 (438)
T PRK13512 118 NSLGFESD-ITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPIL 196 (438)
T ss_pred CCCCCCCC-CeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHH
Confidence 98876542 222 22333221 2357899999999999999999999999999999999888889999999999
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
+.|++.||++++++.|.++.. . .+++++|+.+++|.|++|+|++||+++ +++.|+.++++|+|.||+++||++|
T Consensus 197 ~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~~~--l~~~gl~~~~~G~i~Vd~~~~t~~~ 270 (438)
T PRK13512 197 DELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNSKF--IESSNIKLDDKGFIPVNDKFETNVP 270 (438)
T ss_pred HHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcChHH--HHhcCcccCCCCcEEECCCcccCCC
Confidence 999999999999999999953 2 466777888999999999999999987 6778899988899999999999999
Q ss_pred CeEEecccCC----------CCCChHHHHHHHHHHHHHHhCCCCC-CCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCC
Q 042564 330 SIWAVGDVTN----------RMNLTPVALMEGTCFAKTVFGGQPC-KPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGD 398 (498)
Q Consensus 330 ~iya~GD~~~----------~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~ 398 (498)
||||+|||++ ..++++.|.+||+++|+||+|.+.. ..++..+|++.|++|+++++|+||+||++. +
T Consensus 271 ~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~---~ 347 (438)
T PRK13512 271 NIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF---D 347 (438)
T ss_pred CEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccC---C
Confidence 9999999986 2467888999999999999975432 235677899999999999999999999875 3
Q ss_pred EEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHhcC-cCCCCChhHH
Q 042564 399 ILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPE-APEIMQGIAVALKCGATKAQFDST-VGIHPSSAEE 476 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~-a~~~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e~ 476 (498)
+.+....+....... ...+.+|+|+++|+++++|||+|++|++ +.|+|+.++++|++++|++||.++ +++||+++..
T Consensus 348 ~~~~~~~~~~~~~~~-~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~ 426 (438)
T PRK13512 348 YKMVEVTQGAHANYY-PGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHP 426 (438)
T ss_pred cEEEEEecCCcCCCc-CCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCcc
Confidence 444444443333222 4567899999999999999999999996 899999999999999999999997 8899999976
Q ss_pred HHHHHHH
Q 042564 477 FVTMRSV 483 (498)
Q Consensus 477 ~~~~~~~ 483 (498)
+..+..+
T Consensus 427 ~~~~~~~ 433 (438)
T PRK13512 427 KDLINMI 433 (438)
T ss_pred ccHHHHH
Confidence 5444333
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=457.02 Aligned_cols=410 Identities=25% Similarity=0.347 Sum_probs=309.1
Q ss_pred cEEEECCChhHHHHHHHHHhCC--CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 25 DLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g--~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||||||+||+++|..|++.+ .+|+|||+ .+.... ..|. +|. ..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~------~~~~~~--~~~~----~~~---------------------~~ 48 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEK------TDIVSF--GACG----LPY---------------------FV 48 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEEC------CCccee--ecCC----Cce---------------------Ee
Confidence 6999999999999999999864 59999994 211110 0010 110 00
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEe-EEEEEeCC--EEEEEeC-CCceEEEEcCeEEEcCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG-EGKIVGPN--EVEVTQL-DGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~~~~i~~~--~~~v~~~-~g~~~~~~~d~liiAtG~~p~ 178 (498)
.+ ..+.. ..+.......+.+.+++++.+ .+..++.. .+.+... ++....++||+||||||++|.
T Consensus 49 ~~--~~~~~----------~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 49 GG--FFDDP----------NTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred cc--ccCCH----------HHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 00 00000 000111123345578998765 46677654 4444331 243233449999999999999
Q ss_pred CCCCCCCC--ccc---ChHHHhccc-----cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHH
Q 042564 179 RAPIPGQE--LAI---TSDEALSLE-----ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAV 247 (498)
Q Consensus 179 ~p~i~g~~--~~~---~~~~~~~l~-----~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~ 247 (498)
.|++||.+ .++ +..+..++. ..+++++|+|+|++|+|+|..+++.|.+|+++++.+.+++. +++++.+.
T Consensus 117 ~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~ 196 (444)
T PRK09564 117 IPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDV 196 (444)
T ss_pred CCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHH
Confidence 99999874 233 333333332 24689999999999999999999999999999999888874 89999999
Q ss_pred HHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCC
Q 042564 248 VARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTN 327 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~ 327 (498)
+.+.+++.||++++++.|.++..+++...+.++ +.++++|.+++|+|+.|+.++ +++.|++++++|+|.||++++|+
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~ 273 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADVVIVATGVKPNTEF--LEDTGLKTLKNGAIIVDEYGETS 273 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCEEEECcCCCcCHHH--HHhcCccccCCCCEEECCCcccC
Confidence 999999999999999999999654433344444 447999999999999999887 67889988888999999999999
Q ss_pred CCCeEEecccCCC----------CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCC
Q 042564 328 VPSIWAVGDVTNR----------MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKG 397 (498)
Q Consensus 328 ~~~iya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~ 397 (498)
+|||||+|||+.. +++++.|.+||+++|+||++.+...+.....+...|++|+++++|+||+||++.|+
T Consensus 274 ~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~- 352 (444)
T PRK09564 274 IENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGI- 352 (444)
T ss_pred CCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCC-
Confidence 9999999999963 46788999999999999998654333333334556999999999999999999865
Q ss_pred CEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHhcCcCCC-CChhH
Q 042564 398 DILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPE-APEIMQGIAVALKCGATKAQFDSTVGIH-PSSAE 475 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~-a~~~i~~~~~~i~~~~~~~~l~~~~~~~-pt~~e 475 (498)
++.+...... ....+....+.+|+|+++|+++++|+|+|++|++ +.|+|+.++++|++++|++||+++.++| |+++|
T Consensus 353 ~~~~~~~~~~-~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~ 431 (444)
T PRK09564 353 DYKTVFIKDK-NHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFAR 431 (444)
T ss_pred CeEEEEEecC-CCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCC
Confidence 4555544432 2233334567899999999999999999999995 8899999999999999999999999888 99999
Q ss_pred HHHHHHHHH
Q 042564 476 EFVTMRSVT 484 (498)
Q Consensus 476 ~~~~~~~~~ 484 (498)
.+..+..++
T Consensus 432 ~~~~~~~~~ 440 (444)
T PRK09564 432 TWDALNVAG 440 (444)
T ss_pred CcCHHHHHH
Confidence 876544443
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=401.75 Aligned_cols=340 Identities=25% Similarity=0.350 Sum_probs=276.2
Q ss_pred HHHhCCcEEEEe-EEEEEeCC--EEEEEeCCCceEEEE--cCeEEEcCCCCCCCCCCCCCC--cccC---hHHHhcc---
Q 042564 131 LLSNAGVKLYEG-EGKIVGPN--EVEVTQLDGTKLSYS--AKHILIATGSRAQRAPIPGQE--LAIT---SDEALSL--- 197 (498)
Q Consensus 131 ~~~~~gv~~~~~-~~~~i~~~--~~~v~~~~g~~~~~~--~d~liiAtG~~p~~p~i~g~~--~~~~---~~~~~~l--- 197 (498)
++.+.+++++.+ .+..+++. .+.+...++ ...+. ||+||||||++|..|++||.+ .+++ ..+...+
T Consensus 53 ~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~-~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~ 131 (427)
T TIGR03385 53 FIKKRGIDVKTNHEVIEVNDERQTVVVRNNKT-NETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQY 131 (427)
T ss_pred HHHhcCCeEEecCEEEEEECCCCEEEEEECCC-CCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHH
Confidence 345678998755 56677654 444433221 22566 999999999999999999964 2332 2222221
Q ss_pred --ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-CCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe
Q 042564 198 --EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG 274 (498)
Q Consensus 198 --~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~ 274 (498)
...+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||++++++.+.++..++.
T Consensus 132 l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~- 210 (427)
T TIGR03385 132 IDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER- 210 (427)
T ss_pred HhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC-
Confidence 1346899999999999999999999999999999988874 558899999999999999999999999999976443
Q ss_pred EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC----------CCCh
Q 042564 275 VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR----------MNLT 344 (498)
Q Consensus 275 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~----------~~~~ 344 (498)
+ +.+.+|+++++|.+|+|+|++|+.++ +++++++++++|+|.||++++|+.|+|||+|||+.. .+++
T Consensus 211 ~-v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 287 (427)
T TIGR03385 211 V-KVFTSGGVYQADMVILATGIKPNSEL--AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLA 287 (427)
T ss_pred E-EEEcCCCEEEeCEEEECCCccCCHHH--HHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeech
Confidence 3 56678889999999999999999987 677889998889999999999999999999999963 3578
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEEEE
Q 042564 345 PVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKL 424 (498)
Q Consensus 345 ~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl 424 (498)
+.|.+||+++|+||.|.......+..+|+.+|++|+++++|+||++|++.|+ ++.+....+....++. ...+.+|+|+
T Consensus 288 ~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~-~~~~~~~~~~~~~~~~-~~~~~g~~kl 365 (427)
T TIGR03385 288 WGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNI-DYKTVFVKAKTHANYY-PGNSPLHLKL 365 (427)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCC-CeEEEEEecCCCCCcC-CCCceEEEEE
Confidence 8999999999999998643333344678899999999999999999998765 4666555544433333 3567899999
Q ss_pred EEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHhcCcC-CCCChhHHH
Q 042564 425 VVDAETEKVLGASMCGPE-APEIMQGIAVALKCGATKAQFDSTVG-IHPSSAEEF 477 (498)
Q Consensus 425 ~~~~~~~~i~G~~~~g~~-a~~~i~~~~~~i~~~~~~~~l~~~~~-~~pt~~e~~ 477 (498)
++++++++|+|+|++|++ +.|+|+.++++|++++|++||.+++| .||.++..+
T Consensus 366 i~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~ 420 (427)
T TIGR03385 366 IYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVW 420 (427)
T ss_pred EEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCcc
Confidence 999999999999999998 99999999999999999999999986 578888654
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=394.26 Aligned_cols=388 Identities=18% Similarity=0.282 Sum_probs=292.8
Q ss_pred ccEEEECCChhHHHHHHHHHhC----CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 24 FDLFVIGAGSGGVRAARFSANF----GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~----g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
.+|||||+|+||+.+|.+|++. +++|+||++ .+.... ..|..+..+
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~------e~~~~Y-------~r~~L~~~~----------------- 53 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCE------EPRIAY-------DRVHLSSYF----------------- 53 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEEC------CCCCcc-------cCCcchHhH-----------------
Confidence 4799999999999999999763 579999994 221111 001000000
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
.. ..+. .+.......+.+.+|+++.++ +..+|+....|.+.+|. .++||+||||||+.|+
T Consensus 54 ---~~---~~~~-----------~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~--~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 54 ---SH---HTAE-----------ELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGR--TVFYDKLIMATGSYPW 114 (847)
T ss_pred ---cC---CCHH-----------HccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCc--EEECCEEEECCCCCcC
Confidence 00 0111 111112234556799999986 66788888888777765 7999999999999999
Q ss_pred CCCCCCCCc--c---cChHHHhccc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHH
Q 042564 179 RAPIPGQEL--A---ITSDEALSLE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVA 249 (498)
Q Consensus 179 ~p~i~g~~~--~---~~~~~~~~l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~ 249 (498)
.|++||.+. + .+.++...+. ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +|++..+.+.
T Consensus 115 ~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~ 194 (847)
T PRK14989 115 IPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLR 194 (847)
T ss_pred CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHH
Confidence 999999753 2 2556655432 35789999999999999999999999999999999988874 8999999999
Q ss_pred HHHHhCCCEEEcCccEEEEEEeC--CeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCC
Q 042564 250 RNLEGRGINLHPRTTIKELIKSE--EGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTN 327 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~ 327 (498)
+.|++.||++++++.+.+|..++ ....+.+.+|+.+++|.||+|+|++||.++ ++++|++++++|+|.||+++||+
T Consensus 195 ~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L--~~~~Gl~~~~~G~I~VD~~l~Ts 272 (847)
T PRK14989 195 RKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKL--ATQCGLAVAPRGGIVINDSCQTS 272 (847)
T ss_pred HHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchH--HhhcCccCCCCCcEEECCCCcCC
Confidence 99999999999999999997543 235678889999999999999999999986 67889999999999999999999
Q ss_pred CCCeEEecccCCC----CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCc-EEEeccCCeeEeeCCHHHHHHcCCCCEEEE
Q 042564 328 VPSIWAVGDVTNR----MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVP-CAVFCIPPLSVVGLSEEQAIEQGKGDILVF 402 (498)
Q Consensus 328 ~~~iya~GD~~~~----~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~-~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~ 402 (498)
+|||||+|||+.. ..+++.|.+||+++|+||+|.... ......+ ...+.+.+++++|... .... .....
T Consensus 273 ~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~-~~g~~~~~~lk~~G~~v~s~G~~~----~~~~-~~~~~ 346 (847)
T PRK14989 273 DPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENA-FEGADLSAKLKLLGVDVGGIGDAH----GRTP-GARSY 346 (847)
T ss_pred CCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcC-CCCcccceEEEECCcceEeccccc----CCCC-CceeE
Confidence 9999999999975 347889999999999999986533 3333344 2334456788888311 1000 01110
Q ss_pred EEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCCh--hHHHHHHHHHHHCCCCHHHHhcCcCC---CCCh-hHH
Q 042564 403 TSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEA--PEIMQGIAVALKCGATKAQFDSTVGI---HPSS-AEE 476 (498)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a--~~~i~~~~~~i~~~~~~~~l~~~~~~---~pt~-~e~ 476 (498)
. +......+|.|+++++++++|+|++++|+.+ .++++.+...+....+.++|....+. ||++ .|.
T Consensus 347 ~---------~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 417 (847)
T PRK14989 347 V---------YLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHAGSGKPSIGVDK 417 (847)
T ss_pred E---------EEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCCCccchhheecCCCCCCCCCcccccc
Confidence 0 1123456899999999999999999999954 78888887777777888888877665 8887 554
Q ss_pred H
Q 042564 477 F 477 (498)
Q Consensus 477 ~ 477 (498)
|
T Consensus 418 l 418 (847)
T PRK14989 418 L 418 (847)
T ss_pred C
Confidence 3
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=334.72 Aligned_cols=352 Identities=20% Similarity=0.260 Sum_probs=255.1
Q ss_pred ccEEEECCChhHHHHHHHHHh--CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 24 FDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~--~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+|+||||||+||+.+|..|++ .+.+|+||+++...+ . ..+..++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~------y-------~~~~l~~~~------------------- 50 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE------Y-------NKPDLSHVF------------------- 50 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC------c-------CcCcCcHHH-------------------
Confidence 589999999999999999988 456899999422110 0 000000000
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEe-EEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG-EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
. ......++.. .....++++.+++++.+ .+..++.....+.+ ++. .+.||+||||||+.|+.|
T Consensus 51 -~--~~~~~~~~~~----------~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~-~~~--~~~yd~LVlATG~~~~~p 114 (377)
T PRK04965 51 -S--QGQRADDLTR----------QSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKS-QGN--QWQYDKLVLATGASAFVP 114 (377)
T ss_pred -h--CCCCHHHhhc----------CCHHHHHHhCCCEEECCCEEEEEECCCCEEEE-CCe--EEeCCEEEECCCCCCCCC
Confidence 0 0001111110 01223455679999876 47788877666665 433 799999999999999999
Q ss_pred CCCCCCcccC---hHHHhccc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHHHHH
Q 042564 181 PIPGQELAIT---SDEALSLE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVARNLE 253 (498)
Q Consensus 181 ~i~g~~~~~~---~~~~~~l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~ 253 (498)
++||.+.+++ ..++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.++
T Consensus 115 ~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~ 194 (377)
T PRK04965 115 PIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLT 194 (377)
T ss_pred CCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHH
Confidence 9999765433 33332221 24689999999999999999999999999999999988876 68889999999999
Q ss_pred hCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 254 GRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 254 ~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
+.||++++++.+.++..+++...+.+.+|+++++|.||+|+|.+|+.++ ++..|+..+. | |.||++++|+.|||||
T Consensus 195 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l--~~~~gl~~~~-g-i~vd~~l~ts~~~VyA 270 (377)
T PRK04965 195 EMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTAL--ARRAGLAVNR-G-IVVDSYLQTSAPDIYA 270 (377)
T ss_pred hCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHH--HHHCCCCcCC-C-EEECCCcccCCCCEEE
Confidence 9999999999999998776667788889999999999999999999986 5667887753 4 9999999999999999
Q ss_pred ecccCCCC----CChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCC
Q 042564 334 VGDVTNRM----NLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM 409 (498)
Q Consensus 334 ~GD~~~~~----~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~ 409 (498)
+|||+... +.+..|.+||+++|+||+|.+.........+...+...++.++|....+ .....+
T Consensus 271 ~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~-------- 337 (377)
T PRK04965 271 LGDCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQRQ-----DLRWQI-------- 337 (377)
T ss_pred eeecEeECCceeehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCCCCC-----CceEEE--------
Confidence 99999642 3566789999999999998654322222233444556788888865321 001110
Q ss_pred ccccccCCceeEEEEEEECCCCeEEEEEEECCChhHH
Q 042564 410 RNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEI 446 (498)
Q Consensus 410 ~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~ 446 (498)
.......+.|+++ ++|+|+|+.++|+.+.+.
T Consensus 338 ----~~~~~~~~~~~~~--~~~~l~g~~~~g~~~~~~ 368 (377)
T PRK04965 338 ----NAESQGMVAKGVD--EAGQLRAFVVSEDRMKEA 368 (377)
T ss_pred ----EeCCCCeEEEEEc--cCCcEEEEEEEChhHHHH
Confidence 0122233556666 579999999999976543
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=330.29 Aligned_cols=360 Identities=19% Similarity=0.246 Sum_probs=258.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC--cEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA--KVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
..+|||||||+||++||..|++.|. +|+|++++...+ . .+-.+++..+ ..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~------y------~r~~l~~~~~-~~--------------- 54 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP------Y------ERPPLSKSML-LE--------------- 54 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC------C------CCCCCCHHHH-CC---------------
Confidence 4589999999999999999999775 899999422110 0 0000110000 00
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
. ..+ .. .+ .....+.+.+++++.++ +..+|.....|.+.+|. .+.||+||||||++|+.
T Consensus 55 ----~-~~~--~~---------~~--~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g~--~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 55 ----D-SPQ--LQ---------QV--LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGE--SWHWDQLFIATGAAARP 114 (396)
T ss_pred ----C-Ccc--cc---------cc--CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCCC--EEEcCEEEEccCCCCCC
Confidence 0 000 00 00 00122345789999885 67888887777777765 79999999999999988
Q ss_pred CCCCCC--Cccc---ChHHHhcccc---CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHH
Q 042564 180 APIPGQ--ELAI---TSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVAR 250 (498)
Q Consensus 180 p~i~g~--~~~~---~~~~~~~l~~---~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~ 250 (498)
+++++. +.++ +.+++..+.+ .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++.+.+.+.+
T Consensus 115 ~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~ 194 (396)
T PRK09754 115 LPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQ 194 (396)
T ss_pred CCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHH
Confidence 776553 2233 3556554433 4689999999999999999999999999999999988875 78888999999
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPS 330 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~ 330 (498)
.+++.||++++++.+.++.. ++.+.+.+.+|+++++|.||+++|.+||..+ +++.++..+ ++|.||+++||++||
T Consensus 195 ~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~--~gi~vd~~~~ts~~~ 269 (396)
T PRK09754 195 RHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISANDQL--AREANLDTA--NGIVIDEACRTCDPA 269 (396)
T ss_pred HHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhhHH--HHhcCCCcC--CCEEECCCCccCCCC
Confidence 99999999999999999975 4456678888999999999999999999876 466777654 569999999999999
Q ss_pred eEEecccCCC---------CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCc--EEEeccCCeeEeeCCHHHHHHcCCCCE
Q 042564 331 IWAVGDVTNR---------MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVP--CAVFCIPPLSVVGLSEEQAIEQGKGDI 399 (498)
Q Consensus 331 iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~--~~~~~~~~~~~vG~~e~~a~~~~~~~~ 399 (498)
|||+|||+.. .++|+.|.+||++||+||+|.... +...| |..+.+..+.++|....+ .+
T Consensus 270 IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~---~~~~p~~~~~~~~~~~~~~G~~~~~-------~~ 339 (396)
T PRK09754 270 IFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLP---LLPPPWFWSDQYSDNLQFIGDMRGD-------DW 339 (396)
T ss_pred EEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCC---CCCCCceEEEeCCccEEEeeCCCCC-------EE
Confidence 9999999852 346789999999999999986533 33333 444446789999975321 11
Q ss_pred EEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCH
Q 042564 400 LVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATK 460 (498)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~ 460 (498)
.+ .. ......|+.+++ ++|+|+|+..+|+.. -...+..+|+.+.++
T Consensus 340 ~~-~~----------~~~~~~~~~~~~--~~~~l~g~~~~~~~~--~~~~~~~~~~~~~~~ 385 (396)
T PRK09754 340 LC-RG----------NPETQKAIWFNL--QNGVLIGAVTLNQGR--EIRPIRKWIQSGKTF 385 (396)
T ss_pred EE-ec----------CCCCceEEEEEe--eCCEEEEEEEECCHH--HHHHHHHHHHCCCCC
Confidence 11 10 112223544444 468999999999842 234455567776653
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=355.07 Aligned_cols=369 Identities=20% Similarity=0.285 Sum_probs=270.2
Q ss_pred EEEECCChhHHHHHHHHHhC---CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 26 LFVIGAGSGGVRAARFSANF---GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 26 vvIIGgG~aGl~aA~~l~~~---g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
|||||||+||+.+|.+|++. +++|+|||+ .+.... ..|..+..+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~------e~~~~y-------~r~~L~~~l-------------------- 47 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGE------EPHPNY-------NRILLSSVL-------------------- 47 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeC------CCCCCc-------ccccccHHH--------------------
Confidence 68999999999999998874 569999994 221110 001000000
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
.+ ..++.++ .......+++.+++++.++ +..+|+....|.+.+|. ++.||+||||||+.|+.|+
T Consensus 48 ~g--~~~~~~l-----------~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~--~~~yD~LVlATGs~p~~p~ 112 (785)
T TIGR02374 48 QG--EADLDDI-----------TLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGR--TLSYDKLILATGSYPFILP 112 (785)
T ss_pred CC--CCCHHHc-----------cCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCc--EeeCCEEEECCCCCcCCCC
Confidence 00 0011111 1111233456799999885 77889888888887765 7999999999999999999
Q ss_pred CCCCCc--c---cChHHHhccc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHHHH
Q 042564 182 IPGQEL--A---ITSDEALSLE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVARNL 252 (498)
Q Consensus 182 i~g~~~--~---~~~~~~~~l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l 252 (498)
+||.+. + .+.++...+. ...++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++...+.+.+.+
T Consensus 113 ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l 192 (785)
T TIGR02374 113 IPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQREL 192 (785)
T ss_pred CCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHH
Confidence 999753 2 3444443322 34689999999999999999999999999999999988765 8999999999999
Q ss_pred HhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeE
Q 042564 253 EGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIW 332 (498)
Q Consensus 253 ~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iy 332 (498)
++.||++++++.+.++..++....+.+.+|+++++|.||+++|.+|+.++ +++++++++ |+|.||+++||++||||
T Consensus 193 ~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~l--a~~~gl~~~--ggI~Vd~~~~Ts~p~Iy 268 (785)
T TIGR02374 193 EQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDEL--AVSAGIKVN--RGIIVNDSMQTSDPDIY 268 (785)
T ss_pred HHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHH--HHhcCCccC--CCEEECCCcccCCCCEE
Confidence 99999999999999997665556788899999999999999999999986 567788776 57999999999999999
Q ss_pred EecccCCC----CCChHHHHHHHHHHHHHHhCCC-CCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecC
Q 042564 333 AVGDVTNR----MNLTPVALMEGTCFAKTVFGGQ-PCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFN 407 (498)
Q Consensus 333 a~GD~~~~----~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~ 407 (498)
|+|||+.. ..++..|.+||+++|.||+|.. .............+.+.+++++|...... ...... +
T Consensus 269 A~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~------~~~~~~--~- 339 (785)
T TIGR02374 269 AVGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETE------RTTSIK--I- 339 (785)
T ss_pred EeeecceeCCcccccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCC------CcEEEE--E-
Confidence 99999964 3467789999999999999865 22222222222345578899999765321 111111 1
Q ss_pred CCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhc
Q 042564 408 PMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDS 465 (498)
Q Consensus 408 ~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~ 465 (498)
.......|.|++++ +++|+|++++|+.. + ...+..++.++..+.+...
T Consensus 340 ------~d~~~~~y~kl~~~--~~rLlGavlvgd~~-~-~~~L~~li~~~~~l~~~~~ 387 (785)
T TIGR02374 340 ------YDEQKGIYKKLVLS--DDKLLGAVLFGDTS-D-YGRLLDMVLKQADISEDPA 387 (785)
T ss_pred ------EcCCCCEEEEEEEE--CCEEEEEEEECCHH-H-HHHHHHHHHcCCCCCcChh
Confidence 12234468999996 56899999999753 2 3556666777766654433
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=307.84 Aligned_cols=282 Identities=23% Similarity=0.337 Sum_probs=216.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+++|||||||+||+.+|..|.+.+.+|+|||+...+ .+..++|. + .
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~-------------~~~~~l~~------------------~---~ 55 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM-------------LFTPLLPQ------------------T---T 55 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc-------------chhhhHHH------------------h---c
Confidence 468999999999999999998778999999941111 01111110 0 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEe----------CCCceEEEEcCeEEEc
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQ----------LDGTKLSYSAKHILIA 172 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~----------~~g~~~~~~~d~liiA 172 (498)
....++.. +...+...+...+++++.+++..+|.....|.+ .+| .+++||+||||
T Consensus 56 --~g~~~~~~-----------~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g--~~i~yD~LViA 120 (424)
T PTZ00318 56 --TGTLEFRS-----------ICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNT--FSVPYDKLVVA 120 (424)
T ss_pred --ccCCChHH-----------hHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCc--eEecCCEEEEC
Confidence 00111111 111233445557899999999999876655554 233 37999999999
Q ss_pred CCCCCCCCCCCCCCc----ccChHHHhccc--------------------cCCCeEEEEcCCHHHHHHHHHHHH------
Q 042564 173 TGSRAQRAPIPGQEL----AITSDEALSLE--------------------ELPKRAVVLGGGYIAVEFASIWRG------ 222 (498)
Q Consensus 173 tG~~p~~p~i~g~~~----~~~~~~~~~l~--------------------~~~~~v~ViG~G~~g~e~a~~l~~------ 222 (498)
||+.|..|.+||.+. ..+.++...+. ...++++|||+|++|+|+|..|.+
T Consensus 121 tGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~ 200 (424)
T PTZ00318 121 HGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDV 200 (424)
T ss_pred CCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999742 22333322110 012489999999999999999875
Q ss_pred --------CCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEec
Q 042564 223 --------MGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFAT 294 (498)
Q Consensus 223 --------~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~ 294 (498)
.+.+|+++++.+.+++.+++++.+.+++.|++.||++++++.|.++..+ .+++++|+++++|.+|+++
T Consensus 201 ~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~ 276 (424)
T PTZ00318 201 RNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWST 276 (424)
T ss_pred HhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEcc
Confidence 3789999999999999999999999999999999999999999998543 3668889999999999999
Q ss_pred CCCcCCCCCCcccCCceeCCCCCeEcCCCCC-CCCCCeEEecccCCC-----CCChHHHHHHHHHHHHHHhC
Q 042564 295 GRAPNTKRLNLKAVGVEVDQTGAVKVDENSR-TNVPSIWAVGDVTNR-----MNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 295 G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~-t~~~~iya~GD~~~~-----~~~~~~A~~~g~~aa~~i~~ 360 (498)
|.+|+. + +++++++++++|+|.||+++| |++|||||+|||+.. ++.+..|.+||+++|+||..
T Consensus 277 G~~~~~-~--~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 277 GVGPGP-L--TKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred CCCCcc-h--hhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 999985 3 567788888889999999999 599999999999973 56788999999999999864
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=295.82 Aligned_cols=282 Identities=25% Similarity=0.304 Sum_probs=221.7
Q ss_pred CccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
+.+|||||||.+|+.+|..|.+. +.+|+|||+...|.-.+ +++.. .
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p-------------------lL~ev-----a-------- 50 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP-------------------LLYEV-----A-------- 50 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch-------------------hhhhh-----h--------
Confidence 46899999999999999999996 48999999532221111 11100 0
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
...++. ..+...+...++.. +++++.+++..||.+..+|.+.+++ .+.||+||+|+|+.+..
T Consensus 51 ----~g~l~~-----------~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~--~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 51 ----TGTLSE-----------SEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLG--EISYDYLVVALGSETNY 113 (405)
T ss_pred ----cCCCCh-----------hheeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCc--cccccEEEEecCCcCCc
Confidence 001111 11222334455544 4999999999999999999887743 89999999999999999
Q ss_pred CCCCCC-Cc---ccChHHHhccc-----------cCC-----CeEEEEcCCHHHHHHHHHHHHCC-------------Cc
Q 042564 180 APIPGQ-EL---AITSDEALSLE-----------ELP-----KRAVVLGGGYIAVEFASIWRGMG-------------ST 226 (498)
Q Consensus 180 p~i~g~-~~---~~~~~~~~~l~-----------~~~-----~~v~ViG~G~~g~e~a~~l~~~g-------------~~ 226 (498)
+.+||. ++ ..+.+++.+++ ..+ -+++|+|||++|+|+|..|.++- .+
T Consensus 114 fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~ 193 (405)
T COG1252 114 FGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELR 193 (405)
T ss_pred CCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccE
Confidence 999996 33 34445543311 111 27999999999999999887541 38
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe-EEEcCEEEEecCCCcCCCCCCc
Q 042564 227 VDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE-EIVADVVLFATGRAPNTKRLNL 305 (498)
Q Consensus 227 V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~~l~l 305 (498)
|+++++.+++||.+++++++..++.|++.||++++++.|++++.+. |++++|+ +|++|.+|||+|.+++...
T Consensus 194 V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~--- 266 (405)
T COG1252 194 VILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLL--- 266 (405)
T ss_pred EEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhh---
Confidence 9999999999999999999999999999999999999999996554 7777777 5999999999999999874
Q ss_pred cc-CCceeCCCCCeEcCCCCCC-CCCCeEEecccCCC------CCChHHHHHHHHHHHHHHhC
Q 042564 306 KA-VGVEVDQTGAVKVDENSRT-NVPSIWAVGDVTNR------MNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 306 ~~-~gi~~~~~g~i~vd~~~~t-~~~~iya~GD~~~~------~~~~~~A~~~g~~aa~~i~~ 360 (498)
++ .+.+.|+.|++.||+++++ ++|||||+|||+.. |+.+..|.+||+.+|+||..
T Consensus 267 ~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 267 KDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred hhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence 55 4788888999999999997 99999999999964 57788999999999999863
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=288.45 Aligned_cols=283 Identities=28% Similarity=0.347 Sum_probs=209.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
|||+|||||+||+++|..|++.|.+|+|+| +...||.|.....+ ..++.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~gg~~~~~~~~---------------~~~~~~~~--- 52 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIE----------GMEPGGQLTTTTEV---------------ENYPGFPE--- 52 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEe----------ccCCCcceeecccc---------------cccCCCCC---
Confidence 699999999999999999999999999999 44467776432111 01111110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
.+... .+...+...+++.+++++...+..+++. .+.+.+.++. .+.||+||+|||+.|..|+
T Consensus 53 ---~~~~~-----------~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~--~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 53 ---GISGP-----------ELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGK--EYTAKAVIIATGASARKLG 116 (300)
T ss_pred ---CCChH-----------HHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCC--EEEeCEEEECCCCCcccCC
Confidence 00001 1223344456667899888767766543 4667666654 8999999999999999998
Q ss_pred CCCCCccc-----ChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhC-
Q 042564 182 IPGQELAI-----TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR- 255 (498)
Q Consensus 182 i~g~~~~~-----~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~- 255 (498)
+||.+... ...........+++++|+|+|.+|+|+|..+.+.+.+|+++.+.+.+. .. ..+.+.+++.
T Consensus 117 i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~--~~----~~~~~~l~~~~ 190 (300)
T TIGR01292 117 IPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR--AE----KILLDRLRKNP 190 (300)
T ss_pred CCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--cC----HHHHHHHHhCC
Confidence 98864211 110000111246799999999999999999999999999999987542 22 3345666676
Q ss_pred CCEEEcCccEEEEEEeCCeEEEEEC-----CCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCC
Q 042564 256 GINLHPRTTIKELIKSEEGVKVITD-----HGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPS 330 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~~~~v~~~-----~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~ 330 (498)
||++++++.+.++..++....+++. +++++++|.+++|+|++|+.++ ++.. +.++++|++.||++++|++||
T Consensus 191 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~--l~~~-~~~~~~g~i~v~~~~~t~~~~ 267 (300)
T TIGR01292 191 NIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGL-LELDEGGYIVTDEGMRTSVPG 267 (300)
T ss_pred CeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHH--HHHh-heecCCCcEEECCCCccCCCC
Confidence 9999999999999765533334332 2357999999999999999987 4444 677888999999999999999
Q ss_pred eEEecccCC-CCCChHHHHHHHHHHHHHHh
Q 042564 331 IWAVGDVTN-RMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 331 iya~GD~~~-~~~~~~~A~~~g~~aa~~i~ 359 (498)
|||+|||+. .++.+..|+.||+.||.+|.
T Consensus 268 vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 268 VFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred EEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 999999998 57788999999999999986
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=284.43 Aligned_cols=288 Identities=22% Similarity=0.282 Sum_probs=208.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
++.+||+||||||||++||..|++.|++++++| ....||.|....-+ +.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie----------~~~~gg~~~~~~~~--------------------~~~ 53 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLIT----------GMEKGGQLTTTTEV--------------------ENW 53 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEE----------eecCCCceecCceE--------------------CCC
Confidence 457899999999999999999999999999999 44567777533211 011
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
+. ....+++..+..+ +.......++++..+.+..++ .+.+.+..+++ .+.||+||+|||+.|+
T Consensus 54 ~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~---~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 54 PG-DPNDLTGPLLMER-----------MHEHATKFETEIIFDHINKVDLQNRPFRLTGDSG---EYTCDALIIATGASAR 118 (321)
T ss_pred CC-CCCCCCHHHHHHH-----------HHHHHHHCCCEEEeeEEEEEEecCCeEEEEecCC---EEEECEEEECCCCCCC
Confidence 10 0122344333322 233334455666666554443 34556654332 6899999999999999
Q ss_pred CCCCCCCCcc-----cChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 042564 179 RAPIPGQELA-----ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLE 253 (498)
Q Consensus 179 ~p~i~g~~~~-----~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~ 253 (498)
.|++||.+.. ............+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+. .++.+.+.+.+.++
T Consensus 119 ~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~ 196 (321)
T PRK10262 119 YLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVE 196 (321)
T ss_pred CCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhcc
Confidence 9999985421 1111111122357899999999999999999999999999999987642 45677888889999
Q ss_pred hCCCEEEcCccEEEEEEeCCe-EEEEECC------CeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCC----
Q 042564 254 GRGINLHPRTTIKELIKSEEG-VKVITDH------GEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDE---- 322 (498)
Q Consensus 254 ~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~------g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~---- 322 (498)
+.||++++++.+.++..++.+ ..+++.+ .+++++|.|++++|++||..++ + .++.++ +|+|.||+
T Consensus 197 ~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~--~-~~l~~~-~g~i~vd~~~~~ 272 (321)
T PRK10262 197 NGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHG 272 (321)
T ss_pred CCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHh--h-cccccc-CCEEEECCCCcc
Confidence 999999999999999765433 2344432 2369999999999999999864 2 245554 58899997
Q ss_pred -CCCCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 323 -NSRTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 323 -~~~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
+++|++|+|||+|||++. ......|+.+|..||..|.
T Consensus 273 ~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 273 NATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 311 (321)
T ss_pred cccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHH
Confidence 789999999999999965 4566679999999998764
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=300.97 Aligned_cols=285 Identities=24% Similarity=0.284 Sum_probs=205.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|...|||+||||||||++||..|++.|++|+|+| +..+||+|....+++. ++
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE----------~~~~GG~~~~~~~i~~---------------~p--- 52 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIE----------KDDFGGQITITSEVVN---------------YP--- 52 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEe----------cCCCCceEEecccccc---------------CC---
Confidence 3456999999999999999999999999999999 5568999865444320 00
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+........+ ...+...+.+.+++++.+.+..++.. .+.+...++ .+.+++||||||++|
T Consensus 53 ----g~~~~~~~~l-----------~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g---~~~a~~lVlATGa~p 114 (555)
T TIGR03143 53 ----GILNTTGPEL-----------MQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG---DYKTLAVLIATGASP 114 (555)
T ss_pred ----CCcCCCHHHH-----------HHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCC---EEEEeEEEECCCCcc
Confidence 0001111111 22233445567899887777666543 355665544 578999999999999
Q ss_pred CCCCCCCCCcccChHHH------hccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHH
Q 042564 178 QRAPIPGQELAITSDEA------LSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARN 251 (498)
Q Consensus 178 ~~p~i~g~~~~~~~~~~------~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~ 251 (498)
+.|++||.+.. +.... ......+++++|||+|++|+|+|..|.++|.+|+++++.+.+. .+..+. .+.
T Consensus 115 ~~~~ipG~~~~-~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~--~~~~~~---~~~ 188 (555)
T TIGR03143 115 RKLGFPGEEEF-TGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT--CAKLIA---EKV 188 (555)
T ss_pred CCCCCCCHHHh-CCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc--cCHHHH---HHH
Confidence 99999986421 11110 0111246899999999999999999999999999999987642 233332 233
Q ss_pred HHhCCCEEEcCccEEEEEEeCCeEEEE---ECCCeE--E--EcCE----EEEecCCCcCCCCCCcccCCceeCCCCCeEc
Q 042564 252 LEGRGINLHPRTTIKELIKSEEGVKVI---TDHGEE--I--VADV----VLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320 (498)
Q Consensus 252 l~~~Gv~i~~~~~v~~i~~~~~~~~v~---~~~g~~--i--~~D~----vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~v 320 (498)
++..||++++++.|.++..++....+. ..+|+. + ++|. |++++|++|++.++ + .+++++++|+|.|
T Consensus 189 ~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~--~-~~l~l~~~G~I~v 265 (555)
T TIGR03143 189 KNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELF--K-GVVELDKRGYIPT 265 (555)
T ss_pred HhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHH--h-hhcccCCCCeEEe
Confidence 445699999999999997544322222 235653 2 3676 99999999999973 3 3578888899999
Q ss_pred CCCCCCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 321 DENSRTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 321 d~~~~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
|++++|++|+|||+|||+.. +..+..|..||++||.+|.
T Consensus 266 d~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 266 NEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred CCccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 99999999999999999853 4556789999999999973
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=304.04 Aligned_cols=284 Identities=25% Similarity=0.340 Sum_probs=209.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..|||+||||||||++||..|++.|++|+|++ . .+||+|.+.-.++ .+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~----------~-~~GG~~~~~~~~~------------------~~--- 258 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA----------E-RIGGQVKDTVGIE------------------NL--- 258 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe----------c-CCCCccccCcCcc------------------cc---
Confidence 46999999999999999999999999999998 2 4788875321111 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
...+...+.++ ...+...+++.+++++.++ +..++ .+.+.+...+|. .+.||++|+|||+.|+
T Consensus 259 -~~~~~~~~~~l-----------~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~--~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 259 -ISVPYTTGSQL-----------AANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGE--VLKAKSVIVATGARWR 324 (515)
T ss_pred -cccCCCCHHHH-----------HHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCC--EEEeCEEEECCCCCcC
Confidence 00111223222 2233344556789988764 55453 345777776665 7999999999999999
Q ss_pred CCCCCCCCccc-----ChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 042564 179 RAPIPGQELAI-----TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLE 253 (498)
Q Consensus 179 ~p~i~g~~~~~-----~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~ 253 (498)
.|++||.+... ...........+++++|||+|++|+|+|..|++.+.+|+++++.+.+.. .+.+.+.++
T Consensus 325 ~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~ 398 (515)
T TIGR03140 325 KLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLK 398 (515)
T ss_pred CCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHh
Confidence 99999853211 0000001112468999999999999999999999999999998776532 234566676
Q ss_pred h-CCCEEEcCccEEEEEEeCCeE-EEEECC---C--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCC
Q 042564 254 G-RGINLHPRTTIKELIKSEEGV-KVITDH---G--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRT 326 (498)
Q Consensus 254 ~-~Gv~i~~~~~v~~i~~~~~~~-~v~~~~---g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t 326 (498)
+ .||++++++.+.++..+++.+ .+.+.+ + +++++|.|++++|++|+++++ +.. ++++++|+|.||+++||
T Consensus 399 ~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l--~~~-~~~~~~G~I~vd~~~~T 475 (515)
T TIGR03140 399 SLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDERGRT 475 (515)
T ss_pred cCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHH--hhh-cccCCCCeEEECCCCCC
Confidence 6 599999999999997764443 355432 2 469999999999999999974 444 77888899999999999
Q ss_pred CCCCeEEecccCCC-CCChHHHHHHHHHHHHHHhC
Q 042564 327 NVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 327 ~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~~ 360 (498)
++|+|||+|||+.. ...+..|+.+|..||.++..
T Consensus 476 s~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 476 SVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred CCCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence 99999999999985 35677899999999998864
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=292.67 Aligned_cols=372 Identities=23% Similarity=0.302 Sum_probs=273.2
Q ss_pred ccEEEECCChhHHHHHHHHHh---CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 24 FDLFVIGAGSGGVRAARFSAN---FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
..++|||.|.+|..+..++.+ .-++|+++-. .+.... + . .
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~------Ep~~nY------~-----------------R--------i 46 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGE------EPRPNY------N-----------------R--------I 46 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEecc------CCCccc------c-----------------c--------e
Confidence 579999999999999999988 3468888872 111110 0 0 0
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
.+ +..++. +..++++...-.+++++++|+++.+. +.++|+....|.++.|. .+.||+||+||||.|++
T Consensus 47 ~L--------s~vl~~-~~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g~--~~~YDkLilATGS~pfi 115 (793)
T COG1251 47 LL--------SSVLAG-EKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGR--TVSYDKLIIATGSYPFI 115 (793)
T ss_pred ee--------ccccCC-CccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCCc--EeecceeEEecCccccc
Confidence 00 000000 00111222222345677899999987 77999999999988876 89999999999999999
Q ss_pred CCCCCCCc-----ccChHHHhccc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHH
Q 042564 180 APIPGQEL-----AITSDEALSLE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVAR 250 (498)
Q Consensus 180 p~i~g~~~-----~~~~~~~~~l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~ 250 (498)
|++||.+. ..+.+|...+. .-.++.+|||+|..|+|+|..|.+.|.++++++..+.++.. +|+.....|+.
T Consensus 116 ~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~ 195 (793)
T COG1251 116 LPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRR 195 (793)
T ss_pred cCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHH
Confidence 99999863 34555554422 23456899999999999999999999999999999887765 89999999999
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPS 330 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~ 330 (498)
.+++.|++++++....++..++....+.++||+.+++|.|++|+|.+||..+ ..++|+.+++ +|.||++|||++|+
T Consensus 196 ~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~el--a~~aGlavnr--GIvvnd~mqTsdpd 271 (793)
T COG1251 196 KLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDEL--AKEAGLAVNR--GIVVNDYMQTSDPD 271 (793)
T ss_pred HHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHh--HHhcCcCcCC--CeeecccccccCCC
Confidence 9999999999999999998766568899999999999999999999999998 6889999987 69999999999999
Q ss_pred eEEecccCCC----CCChHHHHHHHHHHHHHHhCCCCCC-CCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEe
Q 042564 331 IWAVGDVTNR----MNLTPVALMEGTCFAKTVFGGQPCK-PDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSS 405 (498)
Q Consensus 331 iya~GD~~~~----~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~ 405 (498)
|||+|+|+.. +.+...+..|++++|+|+.+..... ......+.-..+...+.+.|--. +. .+- ...++.
T Consensus 272 IYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~-e~--~~~-~~iv~~-- 345 (793)
T COG1251 272 IYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQ-ET--EGA-ESIVFR-- 345 (793)
T ss_pred eeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeeccchh-hc--CCC-ceEEEe--
Confidence 9999999964 7788899999999999999875432 11111111122333444444332 11 111 111111
Q ss_pred cCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcC
Q 042564 406 FNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDST 466 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~ 466 (498)
+.....|-|+++ ++++|+|+.++|+.+. =..|-.+|..+..+.++.+.
T Consensus 346 ---------D~~~~iYKrlvL--~dd~IvgavL~GDt~d--~~~l~~li~~~~~~se~r~~ 393 (793)
T COG1251 346 ---------DEQRGIYKKLVL--KDDKIVGAVLYGDTSD--GGWLLDLILKGADISEIRDT 393 (793)
T ss_pred ---------cccccceeEEEE--eCCeEEEEEEEeeccc--chHHHHHHhcCCCccccchh
Confidence 222334667777 5679999999999532 13455668888888777653
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=286.20 Aligned_cols=278 Identities=24% Similarity=0.329 Sum_probs=211.6
Q ss_pred cEEEECCChhHHHHHHHHHh---CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 25 DLFVIGAGSGGVRAARFSAN---FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+|||||||+||+.+|.+|++ .+.+|+|||++..+ .+..++|.- .
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~-------------~~~~~~~~~----~---------------- 47 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT-------------PYSGMLPGM----I---------------- 47 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC-------------cccchhhHH----H----------------
Confidence 48999999999999999964 46899999942111 111112200 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
. ...+.. ++...+.+.+++.+++++.+++..+|+....|.+.+|+ +++||+||||||+.|..|+
T Consensus 48 -~--g~~~~~-----------~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~--~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 48 -A--GHYSLD-----------EIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRP--PLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred -h--eeCCHH-----------HhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCC--cccccEEEEccCCCCCCCC
Confidence 0 000111 11122334556679999999999999887788887775 7999999999999999999
Q ss_pred CCCCC-cc---cChHHHhc--------c--ccCCCeEEEEcCCHHHHHHHHHHHH----CC--CcEEEEeeCCCCCCCCC
Q 042564 182 IPGQE-LA---ITSDEALS--------L--EELPKRAVVLGGGYIAVEFASIWRG----MG--STVDLLFRKELPLRGFD 241 (498)
Q Consensus 182 i~g~~-~~---~~~~~~~~--------l--~~~~~~v~ViG~G~~g~e~a~~l~~----~g--~~V~lv~~~~~~l~~~~ 241 (498)
+||.. .. .+.+++.. . ....++++|+|+|++|+|+|..|.+ .| .+|+++ ..+.+++.++
T Consensus 112 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~ 190 (364)
T TIGR03169 112 VEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFP 190 (364)
T ss_pred CCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCC
Confidence 99852 22 22222221 1 1235799999999999999999875 34 589999 5677777788
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD 321 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd 321 (498)
+++.+.+.+.+++.||++++++.+.++.. + .+.+.+|+++++|.+|+|+|.+|+.. +...++.++++|+|.||
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~---l~~~gl~~~~~g~i~vd 263 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVD 263 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCChhhH---HHHcCCCcCCCCeEEEC
Confidence 99999999999999999999999998853 2 46777888999999999999999864 45567888888999999
Q ss_pred CCCCC-CCCCeEEecccCCC-----CCChHHHHHHHHHHHHHHh
Q 042564 322 ENSRT-NVPSIWAVGDVTNR-----MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 322 ~~~~t-~~~~iya~GD~~~~-----~~~~~~A~~~g~~aa~~i~ 359 (498)
+++|| ++|||||+|||+.. ++.+..|.+||+++|+||.
T Consensus 264 ~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 307 (364)
T TIGR03169 264 PTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLR 307 (364)
T ss_pred CccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHH
Confidence 99998 99999999999963 3456789999999999985
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=291.50 Aligned_cols=275 Identities=27% Similarity=0.341 Sum_probs=201.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+||||||||+++|..|++.|++|+|+|+ ...+||.+.+ + +|.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~---------~~~~GG~l~~-g-ip~---------------------- 178 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEA---------LHKPGGVVTY-G-IPE---------------------- 178 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEec---------CCCCCcEeee-c-CCC----------------------
Confidence 357999999999999999999999999999994 3346666421 1 110
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC-CCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS-RAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~-~p~~p 180 (498)
..++ .++.. .....+.+.|++++.++.. . ..+...+. ...||+||||||+ .|+.|
T Consensus 179 ----~~~~-~~~~~-----------~~~~~l~~~gv~~~~~~~v---~--~~v~~~~~---~~~yd~viiAtGa~~p~~~ 234 (449)
T TIGR01316 179 ----FRLP-KEIVV-----------TEIKTLKKLGVTFRMNFLV---G--KTATLEEL---FSQYDAVFIGTGAGLPKLM 234 (449)
T ss_pred ----ccCC-HHHHH-----------HHHHHHHhCCcEEEeCCcc---C--CcCCHHHH---HhhCCEEEEeCCCCCCCcC
Confidence 0011 11111 1122345679999887532 1 12222222 3469999999998 69999
Q ss_pred CCCCCCc--ccChHHHhcc---------------ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHH
Q 042564 181 PIPGQEL--AITSDEALSL---------------EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDE 243 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~l---------------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~ 243 (498)
++||.+. +++..+++.. ...+++|+|||+|++|+|+|..+.++|.+|+++++.+.......
T Consensus 235 ~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~-- 312 (449)
T TIGR01316 235 NIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR-- 312 (449)
T ss_pred CCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC--
Confidence 9998753 4554444321 12458999999999999999999999999999998764211111
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEEEC---------CC-----------eEEEcCEEEEecCCCcCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVITD---------HG-----------EEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~~---------~g-----------~~i~~D~vi~a~G~~p~~~ 301 (498)
....+.+++.||++++++.+.++..++++ + .|++. +| .++++|.||+|+|+.|+..
T Consensus 313 --~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~ 390 (449)
T TIGR01316 313 --VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI 390 (449)
T ss_pred --HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch
Confidence 22335577889999999999999764332 2 33332 22 2699999999999999987
Q ss_pred CCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 302 RLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 302 ~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
+ ++..+++++++|+|.||++++|++|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 391 ~--l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 391 M--AETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred h--hhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 6 5677899998899999999999999999999999888889999999999999985
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=269.95 Aligned_cols=364 Identities=22% Similarity=0.311 Sum_probs=260.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC--cEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA--KVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
...++|||+|++|..|+..+++.|. +++++-++...+-+. ..
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr--~~---------------------------------- 117 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDR--AR---------------------------------- 117 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccc--hh----------------------------------
Confidence 3579999999999999999999765 777776322221110 00
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+..........+.....+++++.+++++.++ ++.+|-...++.+.+|+ .+.|++|+||||+.|+.
T Consensus 118 ------------Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge--~~kys~LilATGs~~~~ 183 (478)
T KOG1336|consen 118 ------------LSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNGE--TLKYSKLIIATGSSAKT 183 (478)
T ss_pred ------------cccceeeccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCCc--eeecceEEEeecCcccc
Confidence 0000001111122222345677899999987 77889888999888876 99999999999999999
Q ss_pred CCCCCCCc-----ccChHHHhc---cccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHH
Q 042564 180 APIPGQEL-----AITSDEALS---LEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVAR 250 (498)
Q Consensus 180 p~i~g~~~-----~~~~~~~~~---l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~ 250 (498)
|++||.+. +...++... .......|+++|+|++|+|++..+...+.+||++++.+.++++ +.+.+.+.+++
T Consensus 184 l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~ 263 (478)
T KOG1336|consen 184 LDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYED 263 (478)
T ss_pred CCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHH
Confidence 99999752 223333322 2233678999999999999999999999999999999999986 89999999999
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNV 328 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~ 328 (498)
.++++||++++++.+.++....++ ..|.+.+|+++++|+|++.+|.+||+.++ +. ++.++++|+|.||+.+||++
T Consensus 264 y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~--~~-g~~~~~~G~i~V~~~f~t~~ 340 (478)
T KOG1336|consen 264 YYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFL--EK-GILLDSKGGIKVDEFFQTSV 340 (478)
T ss_pred HHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccc--cc-cceecccCCEeehhceeecc
Confidence 999999999999999999877644 77889999999999999999999999984 44 88899999999999999999
Q ss_pred CCeEEecccCCCC----------CChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEE--EeccCCeeEeeCCHHHHHHcCC
Q 042564 329 PSIWAVGDVTNRM----------NLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCA--VFCIPPLSVVGLSEEQAIEQGK 396 (498)
Q Consensus 329 ~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~~~~vG~~e~~a~~~~~ 396 (498)
|||||+||++..+ ..+..|..+|+-+...+....... +...|.+ .+....+-+.|.+ +
T Consensus 341 ~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~--~~~lPyf~t~~f~~~~~~~G~g--------~ 410 (478)
T KOG1336|consen 341 PNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDA--YDYLPYFYTRFFSLSWRFAGDG--------V 410 (478)
T ss_pred CCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCccc--ccccchHHHHHhhhhccccCcC--------c
Confidence 9999999999752 234467777875555554322222 3344432 1111111112211 1
Q ss_pred CCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHh
Q 042564 397 GDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFD 464 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~ 464 (498)
.+..... ..+...|...++ + +..+|+..-+-. .+..+.++-.++++..+..+.
T Consensus 411 ~~~v~~G-----------~~e~~~f~ay~~--k-~~~v~a~~~~g~-~~~~~~~a~l~~~~~~v~~~~ 463 (478)
T KOG1336|consen 411 GDVVLFG-----------DLEPGSFGAYWI--K-GDKVGAVAEGGR-DEEVSQFAKLARQGPEVTSLK 463 (478)
T ss_pred cceeeec-----------ccccccceeeEe--e-ccEEEEEeccCC-ChHHHHHHHHHhcCCcchhhh
Confidence 1111110 122233666666 4 777787765543 478899999999998877643
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=293.26 Aligned_cols=284 Identities=25% Similarity=0.342 Sum_probs=210.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..|||+||||||||++||.+|++.|++|+|++ . .+||+|...--++ ++.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~----------~-~~GG~~~~~~~~~---------------~~~----- 258 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVA----------E-RFGGQVLDTMGIE---------------NFI----- 258 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe----------c-CCCCeeeccCccc---------------ccC-----
Confidence 46999999999999999999999999999998 3 3788874211111 000
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
..+...+.++ ...+...+++.++++..++ +..++. +.+.+.+.+|. .+.||.||+|||+.|+
T Consensus 259 --~~~~~~~~~l-----------~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~--~i~a~~vViAtG~~~r 323 (517)
T PRK15317 259 --SVPETEGPKL-----------AAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGA--VLKAKTVILATGARWR 323 (517)
T ss_pred --CCCCCCHHHH-----------HHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCC--EEEcCEEEECCCCCcC
Confidence 0112233332 2334455666789888764 656654 36777776665 7999999999999999
Q ss_pred CCCCCCCCcc-----cChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 042564 179 RAPIPGQELA-----ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLE 253 (498)
Q Consensus 179 ~p~i~g~~~~-----~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~ 253 (498)
.|++||.+.. ............+++|+|||+|++|+|+|..|+..+.+|+++++.+.+.. + +.+.+.+.
T Consensus 324 ~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~--~----~~l~~~l~ 397 (517)
T PRK15317 324 NMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA--D----QVLQDKLR 397 (517)
T ss_pred CCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc--c----HHHHHHHh
Confidence 9989886321 10101111112468999999999999999999999999999999876432 2 34455565
Q ss_pred h-CCCEEEcCccEEEEEEeCCeE-EEEEC---CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCC
Q 042564 254 G-RGINLHPRTTIKELIKSEEGV-KVITD---HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRT 326 (498)
Q Consensus 254 ~-~Gv~i~~~~~v~~i~~~~~~~-~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t 326 (498)
+ .||++++++.+.++..+++.+ .+.+. +| +++++|.+++++|++||++++ +.. +.++++|+|.||+++||
T Consensus 398 ~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l--~~~-v~~~~~g~i~vd~~l~T 474 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWL--KGT-VELNRRGEIIVDARGAT 474 (517)
T ss_pred cCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHH--hhh-eeeCCCCcEEECcCCCC
Confidence 5 599999999999998764442 34443 33 369999999999999999974 444 78888899999999999
Q ss_pred CCCCeEEecccCCC-CCChHHHHHHHHHHHHHHhC
Q 042564 327 NVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 327 ~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~~ 360 (498)
++|+|||+|||+.. .+....|+.+|..||.+++.
T Consensus 475 s~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 475 SVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFD 509 (517)
T ss_pred CCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHH
Confidence 99999999999985 46688999999999998763
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=264.94 Aligned_cols=279 Identities=31% Similarity=0.442 Sum_probs=206.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCc-EEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAK-VGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~-V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
+.|||+|||||||||+||.++++.+++ ++|+| ....||.-.... .+.+++.+.-
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~----------~~~~gg~~~~~~---------------~venypg~~~ 56 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILE----------GGEPGGQLTKTT---------------DVENYPGFPG 56 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEe----------cCCcCCccccce---------------eecCCCCCcc
Confidence 469999999999999999999999998 77777 455554421110 1122222211
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
.....+++.. +.+.....++++....+..++.. .+.|.+.++ ++++++||||||..++
T Consensus 57 ------~~~g~~L~~~-----------~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~---~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 57 ------GILGPELMEQ-----------MKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKG---TYEAKAVIIATGAGAR 116 (305)
T ss_pred ------CCchHHHHHH-----------HHHHHhhcCeEEEEEEEEEEeecCceEEEEECCC---eEEEeEEEECcCCccc
Confidence 1222333333 23344557888888777776654 688888776 4999999999999999
Q ss_pred CCCCCCCC--------cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHH
Q 042564 179 RAPIPGQE--------LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVAR 250 (498)
Q Consensus 179 ~p~i~g~~--------~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~ 250 (498)
.|.+||.. ++.+++. ....++|+|||+|.+++|.|.+|...+.+|++++|.+.+-. . +.+.+
T Consensus 117 ~~~~~~e~e~~g~gv~yc~~cdg----~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra--~----~~~~~ 186 (305)
T COG0492 117 KLGVPGEEEFEGKGVSYCATCDG----FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA--E----EILVE 186 (305)
T ss_pred CCCCCcchhhcCCceEEeeecCc----cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc--C----HHHHH
Confidence 99887532 2333333 22457999999999999999999999999999999887432 3 33445
Q ss_pred HHHhC-CCEEEcCccEEEEEEeCCeEEEEECC--C--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCC
Q 042564 251 NLEGR-GINLHPRTTIKELIKSEEGVKVITDH--G--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSR 325 (498)
Q Consensus 251 ~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~ 325 (498)
.+++. +|.+++++.+.++..++ ...+++.+ + +.+.+|-+++++|..|++++ ++..+. ++++|+|.||+.++
T Consensus 187 ~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~ 262 (305)
T COG0492 187 RLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEME 262 (305)
T ss_pred HHHhcCCeEEEeCCceeEEecCc-cceEEEEecCCceEEEEeceEEEecCCCCchHH--Hhhccc-cCCCCcEEcCCCcc
Confidence 55555 89999999999998765 22344433 3 26889999999999999987 455556 78899999999999
Q ss_pred CCCCCeEEecccCCCCC-ChHHHHHHHHHHHHHHh
Q 042564 326 TNVPSIWAVGDVTNRMN-LTPVALMEGTCFAKTVF 359 (498)
Q Consensus 326 t~~~~iya~GD~~~~~~-~~~~A~~~g~~aa~~i~ 359 (498)
||+|+|||+||++..+. ++..|..+|-.||.++.
T Consensus 263 TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 263 TSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAE 297 (305)
T ss_pred cCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHH
Confidence 99999999999998743 67788889988888764
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=285.77 Aligned_cols=277 Identities=23% Similarity=0.320 Sum_probs=201.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..+||+||||||||++||..|++.|++|+|+|+ ...+||.|.+ .+|. | .
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~---------~~~~GG~l~~--gip~------------------~--~ 187 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEA---------LHEPGGVLVY--GIPE------------------F--R 187 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEec---------CCCCCCeeee--cCCC------------------c--c
Confidence 457999999999999999999999999999994 3456777632 1220 0 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC-CCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS-RAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~-~p~~p 180 (498)
.. -..+. ......+++.|++++.++... .. +...+. ...+.||+||||||+ .|+.+
T Consensus 188 l~------~~~~~-----------~~~~~~~~~~gv~i~~~~~v~---~~--v~~~~~-~~~~~~d~viiAtGa~~~~~l 244 (464)
T PRK12831 188 LP------KETVV-----------KKEIENIKKLGVKIETNVVVG---KT--VTIDEL-LEEEGFDAVFIGSGAGLPKFM 244 (464)
T ss_pred CC------ccHHH-----------HHHHHHHHHcCCEEEcCCEEC---Cc--CCHHHH-HhccCCCEEEEeCCCCCCCCC
Confidence 00 00111 111234556799988876331 11 222221 124579999999998 69999
Q ss_pred CCCCCC--cccChHHHhcc--------------ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-CCCCCCHH
Q 042564 181 PIPGQE--LAITSDEALSL--------------EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-PLRGFDDE 243 (498)
Q Consensus 181 ~i~g~~--~~~~~~~~~~l--------------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-~l~~~~~~ 243 (498)
++||.+ .+++..+++.. ...+++|+|||+|++|+|+|..+.++|.+|+++++.+. .++....+
T Consensus 245 ~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e 324 (464)
T PRK12831 245 GIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEE 324 (464)
T ss_pred CCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHH
Confidence 999975 35665555421 13468999999999999999999999999999998653 23322222
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEEEC------------------CCe--EEEcCEEEEecCCCcCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVITD------------------HGE--EIVADVVLFATGRAPNTK 301 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~~------------------~g~--~i~~D~vi~a~G~~p~~~ 301 (498)
+ +.+++.||++++++.+.++..++++ + .+.+. +|+ .+++|.||+|+|+.|+..
T Consensus 325 ----~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 399 (464)
T PRK12831 325 ----V-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL 399 (464)
T ss_pred ----H-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChh
Confidence 1 3356789999999999998764432 2 22221 222 599999999999999997
Q ss_pred CCCccc-CCceeCCCCCeEcCCC-CCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 302 RLNLKA-VGVEVDQTGAVKVDEN-SRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 302 ~l~l~~-~gi~~~~~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
+ +.. .|++++++|+|.||++ ++||.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 400 ~--~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 400 I--SSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred h--hcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 6 344 6888988899999998 999999999999999988888999999999999984
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=286.56 Aligned_cols=275 Identities=24% Similarity=0.330 Sum_probs=199.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+||||||||++||..|++.|++|+|+|+ ...+||.+.+ .+|. +.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek---------~~~~GG~lr~--~IP~------------------~R-- 586 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFER---------EENAGGVVKN--IIPQ------------------FR-- 586 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEec---------ccccCcceee--eccc------------------cc--
Confidence 357999999999999999999999999999994 3456777643 2331 10
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~p 180 (498)
+. .+.+. ...+.+.+.|+++..++.. .+...+. ....||+||||||+++ ..+
T Consensus 587 ------lp-~evL~-----------~die~l~~~GVe~~~gt~V-------di~le~L--~~~gYDaVILATGA~~~~~l 639 (1019)
T PRK09853 587 ------IP-AELIQ-----------HDIEFVKAHGVKFEFGCSP-------DLTVEQL--KNEGYDYVVVAIGADKNGGL 639 (1019)
T ss_pred ------cc-HHHHH-----------HHHHHHHHcCCEEEeCcee-------EEEhhhh--eeccCCEEEECcCCCCCCCC
Confidence 00 11111 1123445679999887533 1222222 2566999999999974 455
Q ss_pred CCCCCC-cccChHHHhc-------cccCCCeEEEEcCCHHHHHHHHHHHHC-C-CcEEEEeeCC-CCCCCCCHHHHHHHH
Q 042564 181 PIPGQE-LAITSDEALS-------LEELPKRAVVLGGGYIAVEFASIWRGM-G-STVDLLFRKE-LPLRGFDDEMRAVVA 249 (498)
Q Consensus 181 ~i~g~~-~~~~~~~~~~-------l~~~~~~v~ViG~G~~g~e~a~~l~~~-g-~~V~lv~~~~-~~l~~~~~~~~~~l~ 249 (498)
+++|.+ .+++..+++. ....+++|+|||+|++|+|+|..+.+. | .+|++++|.+ ..++..++++ .
T Consensus 640 ~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEl----e 715 (1019)
T PRK09853 640 KLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEY----E 715 (1019)
T ss_pred CCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHH----H
Confidence 777754 2444333322 123478999999999999999998887 4 3899999875 3455444433 3
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEE-----------------EEECCCeEEEcCEEEEecCCCcCCCCCCcccCCcee
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVK-----------------VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEV 312 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~-----------------v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~ 312 (498)
+.+ +.||++++...+.++..++ .+. +...++.++++|.||+|+|..|+.++ ++..|+.+
T Consensus 716 ~Al-eeGVe~~~~~~p~~I~~dG-~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel--le~~GL~l 791 (1019)
T PRK09853 716 EAL-EDGVEFKELLNPESFDADG-TLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL--LKANGIPL 791 (1019)
T ss_pred HHH-HcCCEEEeCCceEEEEcCC-cEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH--HHhcCccc
Confidence 333 4699999998888885322 221 12233457999999999999999987 56788988
Q ss_pred CCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 313 DQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 313 ~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
+++|+|.||++++|+.|+|||+|||+.++.++..|+.+|+.||++|.+..
T Consensus 792 d~~G~I~VDetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 792 DKKGWPVVDANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred cCCCCEEeCCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 88899999999999999999999999888889999999999999998643
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=262.97 Aligned_cols=289 Identities=26% Similarity=0.362 Sum_probs=198.9
Q ss_pred cccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhh
Q 042564 17 EEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDAR 96 (498)
Q Consensus 17 ~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~ 96 (498)
+.++....+|+|||||++|+.+|..|++.|++|+++|+ ...+||.... + +|
T Consensus 12 ~~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~---------~~~~gg~~~~-~-~~------------------ 62 (352)
T PRK12770 12 EKPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDK---------LPEPGGLMLF-G-IP------------------ 62 (352)
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeC---------CCCCCceeee-c-Cc------------------
Confidence 33444456999999999999999999999999999994 2334443210 0 00
Q ss_pred cCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe-C------CEEEEEeCCCceEEEEcCeE
Q 042564 97 SYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG-P------NEVEVTQLDGTKLSYSAKHI 169 (498)
Q Consensus 97 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~-~------~~~~v~~~~g~~~~~~~d~l 169 (498)
........ +....+. +.+.+++++.++....+ . ..+.......+...++||+|
T Consensus 63 --------~~~~~~~~-----------~~~~~~~-l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 122 (352)
T PRK12770 63 --------EFRIPIER-----------VREGVKE-LEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAV 122 (352)
T ss_pred --------ccccCHHH-----------HHHHHHH-HHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEE
Confidence 00001000 1111122 33458888887644321 1 11111111111124789999
Q ss_pred EEcCCC-CCCCCCCCCCCc--ccChHHHhc-----------cccC----CCeEEEEcCCHHHHHHHHHHHHCCCc-EEEE
Q 042564 170 LIATGS-RAQRAPIPGQEL--AITSDEALS-----------LEEL----PKRAVVLGGGYIAVEFASIWRGMGST-VDLL 230 (498)
Q Consensus 170 iiAtG~-~p~~p~i~g~~~--~~~~~~~~~-----------l~~~----~~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv 230 (498)
|||||+ .|..|++||.+. +++..+... .... .++++|+|+|++|+|+|..|...|.+ |+++
T Consensus 123 viAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi 202 (352)
T PRK12770 123 LIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLA 202 (352)
T ss_pred EEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 999999 578888998653 344332211 1112 47999999999999999999999997 9999
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE--------------------CCCeEEEcCEE
Q 042564 231 FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT--------------------DHGEEIVADVV 290 (498)
Q Consensus 231 ~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~--------------------~~g~~i~~D~v 290 (498)
++.+...... .....+.|+++||++++++.+.++..++....+++ .+++.+++|.+
T Consensus 203 ~~~~~~~~~~----~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~v 278 (352)
T PRK12770 203 YRRTINEAPA----GKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTV 278 (352)
T ss_pred eecchhhCCC----CHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEE
Confidence 9865421111 13344568889999999999999875543223322 12347999999
Q ss_pred EEecCCCcCCCCCCccc-CCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhC
Q 042564 291 LFATGRAPNTKRLNLKA-VGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 291 i~a~G~~p~~~~l~l~~-~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 360 (498)
|+++|++|+..+ ..+ .|+.++++|+|.||++++|+.|+|||+|||+..+.....|+.||+.+|++|..
T Consensus 279 i~a~G~~p~~~l--~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 279 VFAIGEIPTPPF--AKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred EECcccCCCchh--hhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHH
Confidence 999999999876 333 78888888999999999999999999999998888899999999999999853
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=273.75 Aligned_cols=275 Identities=24% Similarity=0.360 Sum_probs=198.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+||||||||+++|..|++.|++|+|+|+ ...+||...+ + +|. +
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~---------~~~~gG~l~~-g-ip~------------------~--- 186 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEA---------RDKAGGLLRY-G-IPE------------------F--- 186 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEcc---------CCCCCcEeec-c-CCC------------------c---
Confidence 347999999999999999999999999999994 2345554211 1 110 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p 180 (498)
.. ..++ .......+.+.++++..++... . .+...+. .+.||+||+|||+. |..+
T Consensus 187 -----~~-~~~~-----------~~~~~~~l~~~gv~~~~~~~v~---~--~v~~~~~---~~~~d~vvlAtGa~~~~~~ 241 (457)
T PRK11749 187 -----RL-PKDI-----------VDREVERLLKLGVEIRTNTEVG---R--DITLDEL---RAGYDAVFIGTGAGLPRFL 241 (457)
T ss_pred -----cC-CHHH-----------HHHHHHHHHHcCCEEEeCCEEC---C--ccCHHHH---HhhCCEEEEccCCCCCCCC
Confidence 00 0111 1122234556789998876431 1 1222221 37899999999985 7777
Q ss_pred CCCCCCc--ccChHHHhcc-------c--cCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCC-CCCCCCHHHHHH
Q 042564 181 PIPGQEL--AITSDEALSL-------E--ELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKEL-PLRGFDDEMRAV 247 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~l-------~--~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~-~l~~~~~~~~~~ 247 (498)
++||.+. +++..+++.. . ..+++|+|||+|.+|+|+|..+.+.|. +|+++++.+. .++....
T Consensus 242 ~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~----- 316 (457)
T PRK11749 242 GIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE----- 316 (457)
T ss_pred CCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----
Confidence 8888653 4444333221 1 246899999999999999999999998 8999998654 2332222
Q ss_pred HHHHHHhCCCEEEcCccEEEEEEeCCe---EEEEE-----------------CCCeEEEcCEEEEecCCCcCCCCCCccc
Q 042564 248 VARNLEGRGINLHPRTTIKELIKSEEG---VKVIT-----------------DHGEEIVADVVLFATGRAPNTKRLNLKA 307 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~~~~~---~~v~~-----------------~~g~~i~~D~vi~a~G~~p~~~~l~l~~ 307 (498)
..+.+++.||++++++.+.++..++++ +.+.. .+++++++|.||+|+|++|+..++ ...
T Consensus 317 ~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~-~~~ 395 (457)
T PRK11749 317 EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLIL-STT 395 (457)
T ss_pred HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhh-ccc
Confidence 245677899999999999999766543 33221 123479999999999999997653 235
Q ss_pred CCceeCCCCCeEcCC-CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 308 VGVEVDQTGAVKVDE-NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 308 ~gi~~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
.++.++++|+|.||+ +++|++|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 396 ~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 396 PGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred cCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 678888889999998 8899999999999999877788999999999999985
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-31 Score=283.76 Aligned_cols=274 Identities=25% Similarity=0.374 Sum_probs=199.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..+||+||||||||++||..|++.|++|+|+|+ ...+||...+ .+|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~---------~~~~GG~l~~--gip----------------------- 475 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEA---------LHEIGGVLKY--GIP----------------------- 475 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCeeee--cCC-----------------------
Confidence 457999999999999999999999999999994 2445665321 122
Q ss_pred cccccccCHH-HHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC-CCCC
Q 042564 102 VHEKIDFDWK-KLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS-RAQR 179 (498)
Q Consensus 102 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~-~p~~ 179 (498)
.+.+. .+.. ...+.+.+.|+++..++.. ... ++..+. ....||+||||||+ .|+.
T Consensus 476 -----~~rlp~~~~~-----------~~~~~l~~~gv~~~~~~~v---~~~--v~~~~l--~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 476 -----EFRLPKKIVD-----------VEIENLKKLGVKFETDVIV---GKT--ITIEEL--EEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -----CCCCCHHHHH-----------HHHHHHHHCCCEEECCCEE---CCc--CCHHHH--hhcCCCEEEEeCCCCCCCC
Confidence 11111 1111 1123345679999887532 111 222221 25679999999998 5998
Q ss_pred CCCCCCC--cccChHHHhcc--------------ccCCCeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCC-CCCCCC
Q 042564 180 APIPGQE--LAITSDEALSL--------------EELPKRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKEL-PLRGFD 241 (498)
Q Consensus 180 p~i~g~~--~~~~~~~~~~l--------------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~-~l~~~~ 241 (498)
+++||.+ .+++..+++.. ...+++|+|||+|++|+|+|..+.++|.+ |+++++.+. .++...
T Consensus 533 l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~ 612 (752)
T PRK12778 533 MNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARL 612 (752)
T ss_pred CCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH
Confidence 9999875 35555554321 12358999999999999999999999997 999998754 233222
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEEC---------CC-----------eEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITD---------HG-----------EEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~---------~g-----------~~i~~D~vi~a~G~~p~ 299 (498)
.++ +.+++.||++++++.+.++..++++ ..+.+. +| .++++|.||+|+|+.|+
T Consensus 613 ~e~-----~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~ 687 (752)
T PRK12778 613 EEV-----KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPN 687 (752)
T ss_pred HHH-----HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCC
Confidence 222 3467789999999999998765432 223221 12 25899999999999999
Q ss_pred CCCCCccc-CCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 300 TKRLNLKA-VGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 300 ~~~l~l~~-~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
..+ +.. .++.++++|+|.||++++|+.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 688 ~~l--~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~ 746 (752)
T PRK12778 688 PLV--PSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAID 746 (752)
T ss_pred ccc--cccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 875 333 4788998899999999999999999999999888888999999999999985
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=280.16 Aligned_cols=274 Identities=23% Similarity=0.356 Sum_probs=196.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..+||+||||||||++||+.|++.|++|+|+|+ ...+||.+.+. +|. +.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek---------~~~lGG~l~~~--IP~------------------~r-- 584 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEK---------KEKPGGVVKNI--IPE------------------FR-- 584 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEec---------ccccCceeeec--ccc------------------cC--
Confidence 357999999999999999999999999999995 34578876431 331 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~p 180 (498)
+. .+.+. .....+.+.||++..+.. . ...+ .+ .....||+||||||+.+ ..+
T Consensus 585 ------lp-~e~l~-----------~~ie~l~~~GVe~~~g~~----~-d~~v--e~--l~~~gYDaVIIATGA~~~~~l 637 (1012)
T TIGR03315 585 ------IS-AESIQ-----------KDIELVKFHGVEFKYGCS----P-DLTV--AE--LKNQGYKYVILAIGAWKHGPL 637 (1012)
T ss_pred ------CC-HHHHH-----------HHHHHHHhcCcEEEEecc----c-ceEh--hh--hhcccccEEEECCCCCCCCCC
Confidence 00 11111 111334557899888731 1 1222 12 12456999999999874 445
Q ss_pred CCCCCC-cccChHHHhc-------cccCCCeEEEEcCCHHHHHHHHHHHHC-CC-cEEEEeeCC-CCCCCCCHHHHHHHH
Q 042564 181 PIPGQE-LAITSDEALS-------LEELPKRAVVLGGGYIAVEFASIWRGM-GS-TVDLLFRKE-LPLRGFDDEMRAVVA 249 (498)
Q Consensus 181 ~i~g~~-~~~~~~~~~~-------l~~~~~~v~ViG~G~~g~e~a~~l~~~-g~-~V~lv~~~~-~~l~~~~~~~~~~l~ 249 (498)
.++|.. .+++..+++. ....+++|+|||+|++|+|+|..+.+. |. +|++++|.. ..++..++++ .
T Consensus 638 ~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl----~ 713 (1012)
T TIGR03315 638 RLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREEL----E 713 (1012)
T ss_pred CcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHH----H
Confidence 677643 3444433332 123578999999999999999998876 75 799999876 3344444443 3
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEEEE---------------ECCCe--EEEcCEEEEecCCCcCCCCCCcccCCcee
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVKVI---------------TDHGE--EIVADVVLFATGRAPNTKRLNLKAVGVEV 312 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~---------------~~~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~ 312 (498)
+.+ +.||++++...+.++. ++.+.+. ..+|+ ++++|.||+|+|..|+.++ ++..|+++
T Consensus 714 ~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~l--le~~GL~l 788 (1012)
T TIGR03315 714 EAL-EDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPL 788 (1012)
T ss_pred HHH-HcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHH--HHhcCccc
Confidence 332 4699999988888875 2222221 11233 6899999999999999987 56788999
Q ss_pred CCCCCeEcCCC-CCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 313 DQTGAVKVDEN-SRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 313 ~~~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
+++|+|.||++ ++|+.|+|||+|||+.++..+..|+.||+.||.+|++..
T Consensus 789 d~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 789 DEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 99999999986 899999999999999888889999999999999998643
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=267.98 Aligned_cols=280 Identities=24% Similarity=0.319 Sum_probs=194.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+||||||||+++|..|++.|++|+|+|+ ...+||...+ .+|. |
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~---------~~~~GG~l~~--gip~------------------~--- 189 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFER---------ADRIGGLLRY--GIPD------------------F--- 189 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEec---------CCCCCceeee--cCCc------------------c---
Confidence 347999999999999999999999999999994 3345554211 1220 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p 180 (498)
... .++. ......+.+.|++++.++....+ +.. + .....||+||+|||+. |..+
T Consensus 190 -----~~~-~~~~-----------~~~~~~~~~~gv~~~~~~~v~~~-----~~~-~--~~~~~~d~vvlAtGa~~~~~l 244 (471)
T PRK12810 190 -----KLE-KEVI-----------DRRIELMEAEGIEFRTNVEVGKD-----ITA-E--ELLAEYDAVFLGTGAYKPRDL 244 (471)
T ss_pred -----cCC-HHHH-----------HHHHHHHHhCCcEEEeCCEECCc-----CCH-H--HHHhhCCEEEEecCCCCCCcC
Confidence 000 1111 11123455679999887643221 111 1 1135799999999997 7778
Q ss_pred CCCCCCc--ccChHHHhc--------------cccCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCCCCCCC-CH
Q 042564 181 PIPGQEL--AITSDEALS--------------LEELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELPLRGF-DD 242 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~--------------l~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~l~~~-~~ 242 (498)
++||.+. +++..+++. ....+++|+|||+|++|+|+|..+.+.|. +|+.+++.+...... +.
T Consensus 245 ~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~ 324 (471)
T PRK12810 245 GIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKN 324 (471)
T ss_pred CCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccc
Confidence 8888642 333222111 12346899999999999999998888886 788666544322111 00
Q ss_pred ----HH-HHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEE-----ECCC---------eEEEcCEEEEecCCCcCCCC
Q 042564 243 ----EM-RAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVI-----TDHG---------EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 243 ----~~-~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~-----~~~g---------~~i~~D~vi~a~G~~p~~~~ 302 (498)
.. .....+.+++.||++++++.+.+|..+++.+ .|. ..+| +++++|.||+|+|.+|+...
T Consensus 325 ~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~ 404 (471)
T PRK12810 325 NPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAG 404 (471)
T ss_pred cCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchh
Confidence 00 1113455678899999999999997544442 232 2222 47999999999999998643
Q ss_pred CCcccCCceeCCCCCeEcC-CCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 303 LNLKAVGVEVDQTGAVKVD-ENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 303 l~l~~~gi~~~~~g~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
+ ++..+++++++|++.+| ++++|+.|+|||+|||+.++.++..|+.||+.||.+|.
T Consensus 405 l-~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~ 461 (471)
T PRK12810 405 L-LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAID 461 (471)
T ss_pred h-ccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHH
Confidence 3 57788889988999998 79999999999999999987788899999999999985
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=282.56 Aligned_cols=274 Identities=22% Similarity=0.310 Sum_probs=198.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
.++|+|||||||||+||..|++.|++|+|+|+ ...+||... ..+|.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~---------~~~~GG~l~--yGIP~----------------------- 351 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA---------FHDLGGVLR--YGIPE----------------------- 351 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEee---------CCCCCceEE--ccCCC-----------------------
Confidence 57999999999999999999999999999994 345677632 12331
Q ss_pred ccccccC-HHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC-CCCCC
Q 042564 103 HEKIDFD-WKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS-RAQRA 180 (498)
Q Consensus 103 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~-~p~~p 180 (498)
+. ..+++.+ ..+.+++.|+++..+.... ..++.++. ....||+|+||||+ .|+.+
T Consensus 352 -----~rlp~~vi~~-----------~i~~l~~~Gv~f~~n~~vG-----~dit~~~l--~~~~yDAV~LAtGA~~pr~l 408 (944)
T PRK12779 352 -----FRLPNQLIDD-----------VVEKIKLLGGRFVKNFVVG-----KTATLEDL--KAAGFWKIFVGTGAGLPTFM 408 (944)
T ss_pred -----CcChHHHHHH-----------HHHHHHhhcCeEEEeEEec-----cEEeHHHh--ccccCCEEEEeCCCCCCCcC
Confidence 11 1111111 1233455799998875332 22333332 24579999999998 48888
Q ss_pred CCCCCCc--ccChHHHhcc----------------ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-CCCCCC
Q 042564 181 PIPGQEL--AITSDEALSL----------------EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-PLRGFD 241 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~l----------------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-~l~~~~ 241 (498)
++||.+. +++..+++.. ....++|+|||||.+|+++|..+.++|.+|+++++.+. .++...
T Consensus 409 ~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~ 488 (944)
T PRK12779 409 NVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARV 488 (944)
T ss_pred CCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccH
Confidence 9998643 5555554421 11358999999999999999999999999999998753 233222
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC--eE-EEEE---------C--------CC--eEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEE--GV-KVIT---------D--------HG--EEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~~-~v~~---------~--------~g--~~i~~D~vi~a~G~~p~ 299 (498)
..+.. ..+.||+++++..+.++..+++ .+ .+.+ . +| ..+++|.||+|+|+.|+
T Consensus 489 ----~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~ 563 (944)
T PRK12779 489 ----EELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTAN 563 (944)
T ss_pred ----HHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCC
Confidence 22333 3467999999999999976532 11 1111 1 12 35999999999999999
Q ss_pred CCCCCcccCCceeCCCCCeEcCC-CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 300 TKRLNLKAVGVEVDQTGAVKVDE-NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 300 ~~~l~l~~~gi~~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
.... ....+++++++|.|.||+ +++|+.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 564 ~~l~-~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~ 623 (944)
T PRK12779 564 PIMK-DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIV 623 (944)
T ss_pred hhhh-hcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHH
Confidence 7532 244578899899999997 5899999999999999988889999999999999984
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=269.21 Aligned_cols=273 Identities=24% Similarity=0.347 Sum_probs=196.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
.++|+||||||||+++|..|++.|++|+|+|+ ...+||...+ .+|. +
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~---------~~~~GG~l~~--gip~------------------~---- 239 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDA---------NEQAGGMMRY--GIPR------------------F---- 239 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEec---------CCCCCceeee--cCCC------------------C----
Confidence 47999999999999999999999999999994 3445665321 1110 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~p~ 181 (498)
. .+..+..+ ....+.+.|+++..++....+ +...+. ...||+|++|||+.+ ..++
T Consensus 240 ----~-~~~~~~~~-----------~~~~l~~~Gv~i~~~~~v~~d-----v~~~~~---~~~~DaVilAtGa~~~~~~~ 295 (652)
T PRK12814 240 ----R-LPESVIDA-----------DIAPLRAMGAEFRFNTVFGRD-----ITLEEL---QKEFDAVLLAVGAQKASKMG 295 (652)
T ss_pred ----C-CCHHHHHH-----------HHHHHHHcCCEEEeCCcccCc-----cCHHHH---HhhcCEEEEEcCCCCCCCCC
Confidence 0 01111111 112345578988876532211 111111 235999999999985 4677
Q ss_pred CCCCCc--ccChHHHhc------cccCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCC-CCCCCCHHHHHHHHHH
Q 042564 182 IPGQEL--AITSDEALS------LEELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKEL-PLRGFDDEMRAVVARN 251 (498)
Q Consensus 182 i~g~~~--~~~~~~~~~------l~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~-~l~~~~~~~~~~l~~~ 251 (498)
+||.+. +++..+++. ....+++|+|||+|++|+|+|..+.++|. +|+++++.+. .++..+.++ .+.
T Consensus 296 ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei----~~a 371 (652)
T PRK12814 296 IPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI----EEA 371 (652)
T ss_pred CCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH----HHH
Confidence 888653 444444432 12346899999999999999999999987 5999998764 355444433 222
Q ss_pred HHhCCCEEEcCccEEEEEEeCCeEEEE---EC---------------CCe--EEEcCEEEEecCCCcCCCCCCcccCCce
Q 042564 252 LEGRGINLHPRTTIKELIKSEEGVKVI---TD---------------HGE--EIVADVVLFATGRAPNTKRLNLKAVGVE 311 (498)
Q Consensus 252 l~~~Gv~i~~~~~v~~i~~~~~~~~v~---~~---------------~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~ 311 (498)
.+.||++++++.+.++..+++.+.++ +. +|+ .+++|.||+|+|..|+..+ ++..|+.
T Consensus 372 -~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~l--l~~~gl~ 448 (652)
T PRK12814 372 -LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI--AEAAGIG 448 (652)
T ss_pred -HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccc--ccccCcc
Confidence 35699999999999987655543222 11 122 5899999999999999987 5667888
Q ss_pred eCCCCCeEcCC-CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 312 VDQTGAVKVDE-NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 312 ~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
++.+|+|.||+ +++|+.|+|||+||++..+.++..|+.+|+.||.+|.
T Consensus 449 ~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 449 TSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred ccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 88889999997 6899999999999999888888999999999999873
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=274.81 Aligned_cols=276 Identities=21% Similarity=0.310 Sum_probs=194.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
.++|+|||||||||+||..|++.|++|+|+|+ ...+||...+ .+|. +
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~---------~~~~GG~l~~--gip~------------------~---- 476 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEA---------LHVVGGVLQY--GIPS------------------F---- 476 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEec---------CCCCcceeec--cCCc------------------c----
Confidence 57999999999999999999999999999994 3445654321 1220 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p~ 181 (498)
. ...+++. ...+.+.+.|+++..++... ..+.+. +- .....||+||||||+. |+.++
T Consensus 477 ----r-l~~e~~~-----------~~~~~l~~~Gv~~~~~~~vg---~~~~~~--~l-~~~~~yDaViIATGa~~pr~l~ 534 (1006)
T PRK12775 477 ----R-LPRDIID-----------REVQRLVDIGVKIETNKVIG---KTFTVP--QL-MNDKGFDAVFLGVGAGAPTFLG 534 (1006)
T ss_pred ----C-CCHHHHH-----------HHHHHHHHCCCEEEeCCccC---CccCHH--HH-hhccCCCEEEEecCCCCCCCCC
Confidence 0 0111111 12234556799998875321 112221 10 0024689999999984 89899
Q ss_pred CCCCC--cccChHHHhcc---------------ccCCCeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCCC-CCCCCH
Q 042564 182 IPGQE--LAITSDEALSL---------------EELPKRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKELP-LRGFDD 242 (498)
Q Consensus 182 i~g~~--~~~~~~~~~~l---------------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~~-l~~~~~ 242 (498)
+||.+ .+++..+++.. ...+++|+|||+|++|+++|..+.++|.+ |+++.+.... ++....
T Consensus 535 IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~ 614 (1006)
T PRK12775 535 IPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIE 614 (1006)
T ss_pred CCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHH
Confidence 99964 35555544321 12468999999999999999999999985 7888765431 221111
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEE---------C--------CC--eEEEcCEEEEecCCCcCCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVIT---------D--------HG--EEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~---------~--------~g--~~i~~D~vi~a~G~~p~~~ 301 (498)
-.+.+++.||++++++.+.++..++++ ..+.+ . +| .++++|.||+|+|+.|+..
T Consensus 615 -----e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 689 (1006)
T PRK12775 615 -----EIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPI 689 (1006)
T ss_pred -----HHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChh
Confidence 124567789999999999998754332 22222 1 12 2599999999999999987
Q ss_pred CCCcccCCceeCCCCCeEcCC-----CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 302 RLNLKAVGVEVDQTGAVKVDE-----NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 302 ~l~l~~~gi~~~~~g~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
++ ....++.++++|.|.+|+ +++||+|+|||+||++.++.++..|+.+|+.||.+|.
T Consensus 690 ~~-~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 690 IT-QSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred hh-hccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHH
Confidence 53 123478888889999996 7899999999999999988889999999999999973
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=252.56 Aligned_cols=275 Identities=24% Similarity=0.334 Sum_probs=193.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+||||||+|+++|..|++.|++|+++|+ ...+||...+ ++|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~---------~~~~gG~l~~--gip~~--------------------- 187 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDR---------HPEIGGLLTF--GIPSF--------------------- 187 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEec---------CCCCCceeee--cCccc---------------------
Confidence 347999999999999999999999999999994 3445665321 23310
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC-CC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ-RA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~-~p 180 (498)
..+ .++ .......+.+.|++++.++... . . +...+ ....||.||+|||+.+. .+
T Consensus 188 -----~~~-~~~-----------~~~~~~~~~~~Gv~~~~~~~v~--~-~--~~~~~---~~~~~D~vilAtGa~~~~~~ 242 (467)
T TIGR01318 188 -----KLD-KAV-----------LSRRREIFTAMGIEFHLNCEVG--R-D--ISLDD---LLEDYDAVFLGVGTYRSMRG 242 (467)
T ss_pred -----cCC-HHH-----------HHHHHHHHHHCCCEEECCCEeC--C-c--cCHHH---HHhcCCEEEEEeCCCCCCcC
Confidence 000 111 1112244566799988765221 1 1 11111 13479999999999874 45
Q ss_pred CCCCCCc--ccChHHH--------hcc---------ccCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCC-CCCC
Q 042564 181 PIPGQEL--AITSDEA--------LSL---------EELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKEL-PLRG 239 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~--------~~l---------~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~-~l~~ 239 (498)
++||.+. +++..++ ..+ ....++++|+|+|.+|+++|..+.++|. +|+++++.+. .++.
T Consensus 243 ~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~ 322 (467)
T TIGR01318 243 GLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG 322 (467)
T ss_pred CCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC
Confidence 7888643 3322211 111 1235899999999999999999999996 7999998764 3444
Q ss_pred CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEEE---C------C-----------CeEEEcCEEEEecCCC
Q 042564 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVIT---D------H-----------GEEIVADVVLFATGRA 297 (498)
Q Consensus 240 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~---~------~-----------g~~i~~D~vi~a~G~~ 297 (498)
.+.++ +.+++.||++++++.+.++..++++ + .+++ . + ...+++|.||+|+|+.
T Consensus 323 ~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~ 397 (467)
T TIGR01318 323 SRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQ 397 (467)
T ss_pred CHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCC
Confidence 44332 3456789999999999999764332 2 2222 0 1 2368999999999999
Q ss_pred cCCCCCCcccCCceeCCCCCeEcC----CCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 298 PNTKRLNLKAVGVEVDQTGAVKVD----ENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 298 p~~~~l~l~~~gi~~~~~g~i~vd----~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
|+...+ ++..+++++++|+|.|| ++++|+.|+|||+|||+..+.++..|+.+|+.||.+|.
T Consensus 398 p~~~~~-~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 398 PHAMPW-LAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred CCcccc-ccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence 986432 56678888888999999 68899999999999999888888899999999999985
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=262.29 Aligned_cols=275 Identities=24% Similarity=0.353 Sum_probs=191.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+||||||||+++|..|++.|++|+|+|+ ...+||...+ .+|. +
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~---------~~~~GG~l~~--gip~------------------~--- 373 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDR---------HPEIGGLLTF--GIPA------------------F--- 373 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCceeee--cCCC------------------c---
Confidence 357999999999999999999999999999994 3455665321 2231 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~p 180 (498)
.+. ..++ ......+++.|+++..++....+ +...+ ....||.|++|||+.+ ..+
T Consensus 374 -----~l~-~~~~-----------~~~~~~~~~~Gv~~~~~~~v~~~-----i~~~~---~~~~~DavilAtGa~~~~~l 428 (654)
T PRK12769 374 -----KLD-KSLL-----------ARRREIFSAMGIEFELNCEVGKD-----ISLES---LLEDYDAVFVGVGTYRSMKA 428 (654)
T ss_pred -----cCC-HHHH-----------HHHHHHHHHCCeEEECCCEeCCc-----CCHHH---HHhcCCEEEEeCCCCCCCCC
Confidence 000 1111 11123445678888876522111 11111 1246999999999864 456
Q ss_pred CCCCCCc--ccChH--------HHhcc---------ccCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCCC-CCC
Q 042564 181 PIPGQEL--AITSD--------EALSL---------EELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELP-LRG 239 (498)
Q Consensus 181 ~i~g~~~--~~~~~--------~~~~l---------~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~-l~~ 239 (498)
.++|.+. +++.. ....+ ....++|+|||+|++|+++|..+.+.|. +|+++++.+.. ++.
T Consensus 429 ~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~ 508 (654)
T PRK12769 429 GLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG 508 (654)
T ss_pred CCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC
Confidence 6776542 22211 11111 1235799999999999999999889986 69999986543 443
Q ss_pred CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC-e-EEEEE---------CCC---------e--EEEcCEEEEecCCC
Q 042564 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEE-G-VKVIT---------DHG---------E--EIVADVVLFATGRA 297 (498)
Q Consensus 240 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~-~~v~~---------~~g---------~--~i~~D~vi~a~G~~ 297 (498)
.+.+ .+.+++.||++++++.+.++..+++ . ..|++ .+| + ++++|.||+|+|+.
T Consensus 509 ~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~ 583 (654)
T PRK12769 509 SKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFN 583 (654)
T ss_pred CHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCC
Confidence 3332 3457788999999999999875432 2 22322 112 2 59999999999999
Q ss_pred cCCCCCCcccCCceeCCCCCeEcCC----CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 298 PNTKRLNLKAVGVEVDQTGAVKVDE----NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 298 p~~~~l~l~~~gi~~~~~g~i~vd~----~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
|+...+ ++..+++++++|.|.||+ +++|++|+|||+||++.++.++..|+.+|+.||++|.
T Consensus 584 p~~~~~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~ 648 (654)
T PRK12769 584 PHGMPW-LESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGII 648 (654)
T ss_pred CCcccc-ccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHH
Confidence 996432 577889999999999986 4899999999999999988889999999999999985
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=244.39 Aligned_cols=278 Identities=25% Similarity=0.330 Sum_probs=188.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
.++|+|||||++|+++|..|++.|++|+|+|+ ...+||.+.+ .+|. +
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~---------~~~~gG~l~~--gip~------------------~---- 189 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFER---------EDRCGGLLMY--GIPN------------------M---- 189 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEec---------CCCCCceeec--cCCC------------------c----
Confidence 46999999999999999999999999999994 3345665421 1120 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p~ 181 (498)
.++ ..+. ....+.+++.|++++.++....+ +.. + .....||.|++|||+. |..++
T Consensus 190 ----~~~-~~~~-----------~~~~~~~~~~Gv~~~~~~~v~~~-----~~~-~--~~~~~~d~VilAtGa~~~~~l~ 245 (485)
T TIGR01317 190 ----KLD-KAIV-----------DRRIDLLSAEGIDFVTNTEIGVD-----ISA-D--ELKEQFDAVVLAGGATKPRDLP 245 (485)
T ss_pred ----cCC-HHHH-----------HHHHHHHHhCCCEEECCCEeCCc-----cCH-H--HHHhhCCEEEEccCCCCCCcCC
Confidence 001 0111 11123456679999887643211 111 1 1246799999999998 88888
Q ss_pred CCCCCc--ccChHHHh----------------ccccCCCeEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCCCCCCC-
Q 042564 182 IPGQEL--AITSDEAL----------------SLEELPKRAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELPLRGFD- 241 (498)
Q Consensus 182 i~g~~~--~~~~~~~~----------------~l~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~l~~~~- 241 (498)
+||.+. +++..+++ ......++|+|||+|++|+|+|..+.+.| .+|+++++.+..+....
T Consensus 246 i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~ 325 (485)
T TIGR01317 246 IPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAK 325 (485)
T ss_pred CCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhccc
Confidence 998652 33322211 01124689999999999999987777776 47999988765432211
Q ss_pred --------H--HHHHHHHHHHHhCCCEE-EcCccEEEEEEeC-Ce-EEEEE--------CCC-----------eEEEcCE
Q 042564 242 --------D--EMRAVVARNLEGRGINL-HPRTTIKELIKSE-EG-VKVIT--------DHG-----------EEIVADV 289 (498)
Q Consensus 242 --------~--~~~~~l~~~l~~~Gv~i-~~~~~v~~i~~~~-~~-~~v~~--------~~g-----------~~i~~D~ 289 (498)
. ++.....+..+..|+.+ ++++.+.+|..++ +. ..+.+ .+| .++++|.
T Consensus 326 ~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~ 405 (485)
T TIGR01317 326 DNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADL 405 (485)
T ss_pred ccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCE
Confidence 1 12222334344457654 4677788886643 22 22221 133 2699999
Q ss_pred EEEecCCC-cCCCCCCcccCCceeCCCCCeE-cCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 290 VLFATGRA-PNTKRLNLKAVGVEVDQTGAVK-VDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 290 vi~a~G~~-p~~~~l~l~~~gi~~~~~g~i~-vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
||+|+|.. |+..+ ++..+++++++|.+. +|++++|+.|+|||+|||+.++.+...|+.+|+.||.+|.
T Consensus 406 Vi~AiG~~~p~~~~--~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~ 475 (485)
T TIGR01317 406 VLLAMGFVGPEQIL--LDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVD 475 (485)
T ss_pred EEEccCcCCCcccc--ccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999996 88876 567788888888885 5678999999999999999888888899999999999974
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-27 Score=237.19 Aligned_cols=323 Identities=27% Similarity=0.299 Sum_probs=237.6
Q ss_pred hCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCCCCCC---cccChHHHhccc---cCCCeEEE
Q 042564 134 NAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQE---LAITSDEALSLE---ELPKRAVV 206 (498)
Q Consensus 134 ~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i~g~~---~~~~~~~~~~l~---~~~~~v~V 206 (498)
+.++++..++ +..+|+....+.+.+| ++.||++++|||++|..++..... ...+..+...+. ...++++|
T Consensus 65 ~~~i~~~~~~~v~~id~~~~~v~~~~g---~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 141 (415)
T COG0446 65 ATGIDVRTGTEVTSIDPENKVVLLDDG---EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVV 141 (415)
T ss_pred hhCCEEeeCCEEEEecCCCCEEEECCC---cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEE
Confidence 4578887765 7788988888888776 789999999999999987611111 122333333222 12589999
Q ss_pred EcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCC-HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEE---EEECCC
Q 042564 207 LGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFD-DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK---VITDHG 282 (498)
Q Consensus 207 iG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~---v~~~~g 282 (498)
+|+|++|+|+|..+++.|.+|++++..+++++.+. +++.+.+.+.+++.||+++++..+.+|....+... +...++
T Consensus 142 vG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 221 (415)
T COG0446 142 VGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG 221 (415)
T ss_pred ECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC
Confidence 99999999999999999999999999999888766 88999999999999999999999999987665433 577788
Q ss_pred eEEEcCEEEEecCCCcCCCCCCcccCC-ceeCCCCCeEcCCCCCCC-CCCeEEecccCCC----------CCChHHHHHH
Q 042564 283 EEIVADVVLFATGRAPNTKRLNLKAVG-VEVDQTGAVKVDENSRTN-VPSIWAVGDVTNR----------MNLTPVALME 350 (498)
Q Consensus 283 ~~i~~D~vi~a~G~~p~~~~l~l~~~g-i~~~~~g~i~vd~~~~t~-~~~iya~GD~~~~----------~~~~~~A~~~ 350 (498)
..+++|.+++++|.+||..+ .++.+ .....+|+|.||+.++|+ .++|||+|||+.. ...+..|..+
T Consensus 222 ~~~~~d~~~~~~g~~p~~~l--~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~ 299 (415)
T COG0446 222 EEIKADLVIIGPGERPNVVL--ANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAA 299 (415)
T ss_pred cEEEeeEEEEeecccccHHH--HhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhh
Confidence 89999999999999999765 33433 145567889999999997 9999999998853 3356688999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccc-ccCCceeEEEEEEECC
Q 042564 351 GTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTI-SGRQEKTVMKLVVDAE 429 (498)
Q Consensus 351 g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~kl~~~~~ 429 (498)
+++++.++.+. ..........+..........+|+++. ..... + .............. .........|++++.+
T Consensus 300 ~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (415)
T COG0446 300 GRIAAENIAGA-LRIPGLLGTVISDVGDLCAASTGLTEG--KERGI-D-VVLVVSGGKDPRAHLYPGAELVGIKLVGDAD 374 (415)
T ss_pred hHHHHHHhccc-cccccccCceEEEEcCeEEEEecCCcc--cccce-e-eeEEEeccCcccccccCCCCeEEEEEEEcCc
Confidence 99999999875 222122222223334567788899987 22211 1 11111111111111 1222334788899989
Q ss_pred CCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcC
Q 042564 430 TEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVG 468 (498)
Q Consensus 430 ~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~ 468 (498)
+++++|++. -. ....+..+..++..+.++.++.....
T Consensus 375 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (415)
T COG0446 375 TGRILGGQE-LE-VLKRIGALALAIGLGDTVAELDALDA 411 (415)
T ss_pred ccceehhhh-HH-HHhhhhhhhhhhhhcCchhhhhhccc
Confidence 999999999 44 66788899999999999988876543
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=225.65 Aligned_cols=285 Identities=24% Similarity=0.343 Sum_probs=204.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
++++|||+|+|.+|.+....+-..-++|++|.+ +... +..--.|+.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSP---------RnyF----lFTPLLpS~--------------------- 99 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSP---------RNYF----LFTPLLPST--------------------- 99 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEecc---------ccce----EEeeccCCc---------------------
Confidence 467899999999999999999888899999993 1110 000001110
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHH--hCCcEEEEeEEEEEeCCEEEEEe----CC--CceEEEEcCeEEEcC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLS--NAGVKLYEGEGKIVGPNEVEVTQ----LD--GTKLSYSAKHILIAT 173 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~gv~~~~~~~~~i~~~~~~v~~----~~--g~~~~~~~d~liiAt 173 (498)
.-..++.+.+.+... .+.+ ..++.++...+..+|+....|+. .+ .....+.||+||+|+
T Consensus 100 --~vGTve~rSIvEPIr-----------~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~ 166 (491)
T KOG2495|consen 100 --TVGTVELRSIVEPIR-----------AIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAV 166 (491)
T ss_pred --cccceeehhhhhhHH-----------HHhhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEec
Confidence 001122222222111 1112 22688888888888887665543 12 224678999999999
Q ss_pred CCCCCCCCCCCCC-ccc---ChHHHhc-------------cccC-------CCeEEEEcCCHHHHHHHHHHHHC------
Q 042564 174 GSRAQRAPIPGQE-LAI---TSDEALS-------------LEEL-------PKRAVVLGGGYIAVEFASIWRGM------ 223 (498)
Q Consensus 174 G~~p~~p~i~g~~-~~~---~~~~~~~-------------l~~~-------~~~v~ViG~G~~g~e~a~~l~~~------ 223 (498)
|+.++.+.+||.. +.+ ..++..+ +..+ --+++|||||++|+|+|..|+.+
T Consensus 167 GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~ 246 (491)
T KOG2495|consen 167 GAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLR 246 (491)
T ss_pred cCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHH
Confidence 9999999999973 211 1111111 1111 12889999999999999998765
Q ss_pred --------CCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe--EEEcCEEEEe
Q 042564 224 --------GSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE--EIVADVVLFA 293 (498)
Q Consensus 224 --------g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~D~vi~a 293 (498)
..+||+++..+++|+.||..+.+..++.+.+.||++.+++.|..+.. ..+.+...+|+ +|++-+++|+
T Consensus 247 k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~--~~I~~~~~~g~~~~iPYG~lVWa 324 (491)
T KOG2495|consen 247 KIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE--KTIHAKTKDGEIEEIPYGLLVWA 324 (491)
T ss_pred HhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecC--cEEEEEcCCCceeeecceEEEec
Confidence 45899999999999999999999999999999999999999998843 34555555664 6899999999
Q ss_pred cCCCcCCCCCCcccCCceeCCCC--CeEcCCCCCC-CCCCeEEecccCCC---CCChHHHHHHHHHHHHHH
Q 042564 294 TGRAPNTKRLNLKAVGVEVDQTG--AVKVDENSRT-NVPSIWAVGDVTNR---MNLTPVALMEGTCFAKTV 358 (498)
Q Consensus 294 ~G~~p~~~~l~l~~~gi~~~~~g--~i~vd~~~~t-~~~~iya~GD~~~~---~~~~~~A~~~g~~aa~~i 358 (498)
||..|..-. +.+.-++++.| .+.||++||. +.+||||+|||+.. .+++.+|.+||.++|+++
T Consensus 325 tG~~~rp~~---k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~f 392 (491)
T KOG2495|consen 325 TGNGPRPVI---KDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNF 392 (491)
T ss_pred CCCCCchhh---hhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHH
Confidence 998876643 22233344545 8999999997 89999999999943 557889999999999986
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=250.08 Aligned_cols=275 Identities=23% Similarity=0.363 Sum_probs=192.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
.++|+||||||+|+++|..|++.|++|+|+|+ ...+||.. ..|..|.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~---------~~~~GG~l-~~gip~~----------------------- 356 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDR---------HPEIGGML-TFGIPPF----------------------- 356 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeC---------CCCCCCee-eccCCcc-----------------------
Confidence 57899999999999999999999999999994 33455552 2232221
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~p~ 181 (498)
.++. .++ ......+.+.|++++.++... . .+...+ ....||.|++|||+.+ ..++
T Consensus 357 ----~l~~-~~~-----------~~~~~~~~~~Gv~~~~~~~v~---~--~~~~~~---l~~~~DaV~latGa~~~~~~~ 412 (639)
T PRK12809 357 ----KLDK-TVL-----------SQRREIFTAMGIDFHLNCEIG---R--DITFSD---LTSEYDAVFIGVGTYGMMRAD 412 (639)
T ss_pred ----cCCH-HHH-----------HHHHHHHHHCCeEEEcCCccC---C--cCCHHH---HHhcCCEEEEeCCCCCCCCCC
Confidence 1111 111 112234566799988765221 1 111111 1356899999999874 4566
Q ss_pred CCCCCc--ccChH--------HHhcc---------ccCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCCC-CCCC
Q 042564 182 IPGQEL--AITSD--------EALSL---------EELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELP-LRGF 240 (498)
Q Consensus 182 i~g~~~--~~~~~--------~~~~l---------~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~-l~~~ 240 (498)
+||.+. +++.- +...+ ....++++|+|+|.+++++|..+.++|. +|+++++.+.. ++..
T Consensus 413 i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~ 492 (639)
T PRK12809 413 LPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGS 492 (639)
T ss_pred CCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC
Confidence 777542 23221 11111 1135899999999999999999888885 79999987643 4434
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEEE---C------CC-----------eEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVIT---D------HG-----------EEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~---~------~g-----------~~i~~D~vi~a~G~~p 298 (498)
..++. .+++.||++++++.+.+|..++++ + .+.+ . +| ..+++|.||+|+|+.|
T Consensus 493 ~~e~~-----~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 493 RKEVV-----NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred HHHHH-----HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence 33332 356789999999999999754432 2 2211 1 12 2689999999999999
Q ss_pred CCCCCCcccCCceeCCCCCeEcCC----CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhC
Q 042564 299 NTKRLNLKAVGVEVDQTGAVKVDE----NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 299 ~~~~l~l~~~gi~~~~~g~i~vd~----~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 360 (498)
+...+ ++..+++++++|.|.+|+ +++|+.|+|||+||++.++.++..|+.+|+.||++|..
T Consensus 568 ~~~~~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 568 HAMPW-LQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred Ccccc-ccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 75432 567889999889999986 48999999999999998888889999999999999863
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=250.29 Aligned_cols=274 Identities=22% Similarity=0.317 Sum_probs=184.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+|||+|+||+++|..|++.|++|+|+|+ ....||...+ .+|. +
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~---------~~~~gG~~~~--~i~~------------------~--- 329 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYES---------LSKPGGVMRY--GIPS------------------Y--- 329 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCceEee--cCCc------------------c---
Confidence 457899999999999999999999999999994 2334444211 1110 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p 180 (498)
.+ ..+++.+ ....+++.|++++.++....+ +...+ ....||+||+|||+. |+.+
T Consensus 330 -----~~-~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~~-----~~~~~---~~~~yD~vilAtGa~~~r~l 384 (604)
T PRK13984 330 -----RL-PDEALDK-----------DIAFIEALGVKIHLNTRVGKD-----IPLEE---LREKHDAVFLSTGFTLGRST 384 (604)
T ss_pred -----cC-CHHHHHH-----------HHHHHHHCCcEEECCCEeCCc-----CCHHH---HHhcCCEEEEEcCcCCCccC
Confidence 00 0111111 123456678998877533211 11111 135799999999987 6778
Q ss_pred CCCCCCc--ccChHHHhc-c----------ccCCCeEEEEcCCHHHHHHHHHHHHCCC------cEEEEeeC--CCCCCC
Q 042564 181 PIPGQEL--AITSDEALS-L----------EELPKRAVVLGGGYIAVEFASIWRGMGS------TVDLLFRK--ELPLRG 239 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~-l----------~~~~~~v~ViG~G~~g~e~a~~l~~~g~------~V~lv~~~--~~~l~~ 239 (498)
++||.+. +++..++.. + ...+++|+|||||++|+|+|..+.+++. +|+++... ...++.
T Consensus 385 ~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~ 464 (604)
T PRK13984 385 RIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA 464 (604)
T ss_pred CCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC
Confidence 8998753 333333221 1 1236899999999999999999998753 67876432 222332
Q ss_pred CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEEC-------------------CCeEEEcCEEEEecCCCcC
Q 042564 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVITD-------------------HGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 240 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~-------------------~g~~i~~D~vi~a~G~~p~ 299 (498)
...+ +.+ +.+.||+++++..+.++..+++.+ .+++. +++++++|.||+|+|+.|+
T Consensus 465 ~~~e----~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~ 539 (604)
T PRK13984 465 DMEE----IEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD 539 (604)
T ss_pred CHHH----HHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence 2222 222 345799999998888886544332 22221 1236999999999999999
Q ss_pred CCCCCcc-cCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 300 TKRLNLK-AVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 300 ~~~l~l~-~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
++++..+ ..++++ ++|+|.||++++|++|+|||+||++..+.+ ..|+.+|+.||++|.
T Consensus 540 ~~~l~~~~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~~-v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 540 YSYLPEELKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGPDI-IHGVADGYWAAEGID 598 (604)
T ss_pred hhhhhhhhccCccc-cCCeEEeCCCCccCCCCEEEecCcCCchHH-HHHHHHHHHHHHHHH
Confidence 9875311 124555 368899999999999999999999987754 679999999999984
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=249.31 Aligned_cols=281 Identities=17% Similarity=0.153 Sum_probs=186.8
Q ss_pred ccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhc
Q 042564 18 EQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARS 97 (498)
Q Consensus 18 ~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~ 97 (498)
+.+...+||+||||||||++||+.|++.|++|+|+|+ ...+||.......
T Consensus 158 ~~~~~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~---------~~~~GG~~~~~~~--------------------- 207 (985)
T TIGR01372 158 DKVNAHCDVLVVGAGPAGLAAALAAARAGARVILVDE---------QPEAGGSLLSEAE--------------------- 207 (985)
T ss_pred hhhcccCCEEEECCCHHHHHHHHHHHhCCCcEEEEec---------CCCCCCeeecccc---------------------
Confidence 3344568999999999999999999999999999994 3345666432110
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeE-EEEEeCCE-EE-EEe------------CCCce
Q 042564 98 YGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGE-GKIVGPNE-VE-VTQ------------LDGTK 161 (498)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~-~~~i~~~~-~~-v~~------------~~g~~ 161 (498)
... ..+..++... ....+... +++++.++ +..+..+. +. +.. .....
T Consensus 208 ---~~~---g~~~~~~~~~-----------~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~ 270 (985)
T TIGR01372 208 ---TID---GKPAADWAAA-----------TVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERL 270 (985)
T ss_pred ---ccC---CccHHHHHHH-----------HHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccce
Confidence 000 1111111111 11222323 47777654 43443321 11 100 00112
Q ss_pred EEEEcCeEEEcCCCCCCCCCCCCCCc--ccChHHHh---cc-c-cCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 042564 162 LSYSAKHILIATGSRAQRAPIPGQEL--AITSDEAL---SL-E-ELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRK 233 (498)
Q Consensus 162 ~~~~~d~liiAtG~~p~~p~i~g~~~--~~~~~~~~---~l-~-~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~ 233 (498)
..+.|++||||||+.++.|++||.+. +++..... .. . ..+++++|+|+|++++|+|..|.+.|. .|+++++.
T Consensus 271 ~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~ 350 (985)
T TIGR01372 271 WRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR 350 (985)
T ss_pred EEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence 36899999999999999999998754 44433222 11 1 135899999999999999999999996 57788765
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC----CCeEEEcCEEEEecCCCcCCCCCCcccCC
Q 042564 234 ELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD----HGEEIVADVVLFATGRAPNTKRLNLKAVG 309 (498)
Q Consensus 234 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~----~g~~i~~D~vi~a~G~~p~~~~l~l~~~g 309 (498)
+.+ ...+.+.+++.||++++++.+.++..++....|++. ++++++||.|+++.|+.||+++. ..++
T Consensus 351 ~~~--------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~--~~lg 420 (985)
T TIGR01372 351 ADV--------SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLF--SQRG 420 (985)
T ss_pred cch--------hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHH--HhcC
Confidence 432 334567788999999999999999765543334433 45679999999999999999873 4444
Q ss_pred --ceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 310 --VEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 310 --i~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
+.+++.....+ -.|++|+||++||+++.. ....|..+|+.||..++
T Consensus 421 ~~~~~~~~~~~~~---~~t~v~gVyaaGD~~g~~-~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 421 GKLAWDAAIAAFL---PGDAVQGCILAGAANGLF-GLAAALADGAAAGAAAA 468 (985)
T ss_pred CCeeeccccCcee---cCCCCCCeEEeeccCCcc-CHHHHHHHHHHHHHHHH
Confidence 33343211111 137899999999998754 55679999999998874
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=197.99 Aligned_cols=269 Identities=23% Similarity=0.282 Sum_probs=189.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+.+|+|||+|||+.+||+++++...|.+|+|.- .-..-..||+... -..+++++.|...+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~-----~~~~i~pGGQLtT---------------TT~veNfPGFPdgi 67 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGM-----MANGIAPGGQLTT---------------TTDVENFPGFPDGI 67 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeee-----eccCcCCCceeee---------------eeccccCCCCCccc
Confidence 347999999999999999999999999999920 0001123444221 11233344443222
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
. -.+++++. ++...+.|.+++..++..+| ...+++.++.+ .+.+|.+|+|||+..+..
T Consensus 68 ~------G~~l~d~m-----------rkqs~r~Gt~i~tEtVskv~~sskpF~l~td~~---~v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 68 T------GPELMDKM-----------RKQSERFGTEIITETVSKVDLSSKPFKLWTDAR---PVTADAVILATGASAKRL 127 (322)
T ss_pred c------cHHHHHHH-----------HHHHHhhcceeeeeehhhccccCCCeEEEecCC---ceeeeeEEEecccceeee
Confidence 2 23333333 34455679999998877665 34566666443 789999999999998888
Q ss_pred CCCCC-Cc-c----cChHHHhcc---ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHH-H
Q 042564 181 PIPGQ-EL-A----ITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA-R 250 (498)
Q Consensus 181 ~i~g~-~~-~----~~~~~~~~l---~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~-~ 250 (498)
.+||. +. + ++.....+- -...|..+|||||.+++|-|.+|.+.+.+|+++.|.+.+- .++.++ +
T Consensus 128 ~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fR------As~~Mq~r 201 (322)
T KOG0404|consen 128 HLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFR------ASKIMQQR 201 (322)
T ss_pred ecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhh------HHHHHHHH
Confidence 88876 21 1 222222221 1235788999999999999999999999999999987642 233333 3
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCe---EEEE---ECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCC-C
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEG---VKVI---TDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDE-N 323 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~---~~v~---~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~-~ 323 (498)
..+..+|++++|+.+.+...+++. +.+. +.+.+.++++-+++++|..|++.++ +. ++++|++|+|.+-+ .
T Consensus 202 a~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l--~g-qve~d~~GYi~t~pgt 278 (322)
T KOG0404|consen 202 AEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFL--KG-QVELDEDGYIVTRPGT 278 (322)
T ss_pred HhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHh--cC-ceeeccCceEEeccCc
Confidence 445569999999888877665432 3332 2233468999999999999999984 44 79999999999985 6
Q ss_pred CCCCCCCeEEecccCCC
Q 042564 324 SRTNVPSIWAVGDVTNR 340 (498)
Q Consensus 324 ~~t~~~~iya~GD~~~~ 340 (498)
..||+|++||+||+...
T Consensus 279 s~TsvpG~FAAGDVqD~ 295 (322)
T KOG0404|consen 279 SLTSVPGVFAAGDVQDK 295 (322)
T ss_pred ccccccceeeccccchH
Confidence 68999999999999874
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=227.25 Aligned_cols=282 Identities=20% Similarity=0.268 Sum_probs=185.4
Q ss_pred CCccEEEECCChhHHHHHHHHHh--CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
..++|+||||||||++||..|++ .|++|+|+|+ ...+||.. ..|..|.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~---------~p~pgGlv-r~gvaP~-------------------- 74 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIER---------LPTPFGLV-RSGVAPD-------------------- 74 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEec---------CCCCcceE-eeccCCC--------------------
Confidence 35689999999999999999987 7999999994 33455543 2222221
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-C
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-Q 178 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~ 178 (498)
+.. ...+...+..++...+++++.+... . ..++.++. ...||.||+|||+.+ +
T Consensus 75 ----------~~~--------~k~v~~~~~~~~~~~~v~~~~nv~v--g---~dvtl~~L---~~~yDaVIlAtGa~~~~ 128 (491)
T PLN02852 75 ----------HPE--------TKNVTNQFSRVATDDRVSFFGNVTL--G---RDVSLSEL---RDLYHVVVLAYGAESDR 128 (491)
T ss_pred ----------cch--------hHHHHHHHHHHHHHCCeEEEcCEEE--C---ccccHHHH---hhhCCEEEEecCCCCCC
Confidence 000 0111222333455567887664321 1 11222221 347999999999986 6
Q ss_pred CCCCCCCCc--ccChHHHhc----------cc---cCCCeEEEEcCCHHHHHHHHHHHHC--------------------
Q 042564 179 RAPIPGQEL--AITSDEALS----------LE---ELPKRAVVLGGGYIAVEFASIWRGM-------------------- 223 (498)
Q Consensus 179 ~p~i~g~~~--~~~~~~~~~----------l~---~~~~~v~ViG~G~~g~e~a~~l~~~-------------------- 223 (498)
.+++||.+. +++..++.. +. ...++|+|||+|++|+|+|..|.+.
T Consensus 129 ~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~ 208 (491)
T PLN02852 129 RLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGS 208 (491)
T ss_pred CCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhC
Confidence 778998653 455554421 11 2368999999999999999998775
Q ss_pred CC-cEEEEeeCCCCCCCC-CHH-------------------------------------HHHHHHHHHHh---------C
Q 042564 224 GS-TVDLLFRKELPLRGF-DDE-------------------------------------MRAVVARNLEG---------R 255 (498)
Q Consensus 224 g~-~V~lv~~~~~~l~~~-~~~-------------------------------------~~~~l~~~l~~---------~ 255 (498)
+. +|+++.|....-..| .++ ..+.+.+...+ +
T Consensus 209 ~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~ 288 (491)
T PLN02852 209 SVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQR 288 (491)
T ss_pred CCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCc
Confidence 55 599998876311000 111 11222222222 5
Q ss_pred CCEEEcCccEEEEEEe--C-Ce-EEEEEC-----------------CCe--EEEcCEEEEecCCC--cCCCC-CCcccCC
Q 042564 256 GINLHPRTTIKELIKS--E-EG-VKVITD-----------------HGE--EIVADVVLFATGRA--PNTKR-LNLKAVG 309 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~--~-~~-~~v~~~-----------------~g~--~i~~D~vi~a~G~~--p~~~~-l~l~~~g 309 (498)
+|.+++.....+|..+ + +. ..+.+. +|+ +++||.||.++|+. |...+ ++ ...+
T Consensus 289 ~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~-~~~g 367 (491)
T PLN02852 289 ELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFD-HKRG 367 (491)
T ss_pred eEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccc-cCcC
Confidence 7999999888888742 1 12 222221 232 58999999999998 55542 21 3346
Q ss_pred ceeCCCCCeEcCCCCCCCCCCeEEecccCCCCC-ChHHHHHHHHHHHHHHhC
Q 042564 310 VEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMN-LTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 310 i~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 360 (498)
+..+.+|+|.+|+.++|++|+|||+|||..++. +...++.+|+.++++|..
T Consensus 368 v~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~ 419 (491)
T PLN02852 368 VVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAE 419 (491)
T ss_pred eeECCCceEEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHH
Confidence 777888999999888999999999999998754 777889999999998863
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=230.57 Aligned_cols=306 Identities=17% Similarity=0.157 Sum_probs=193.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCch--------hhHHHHHHhHhhHH
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCV--------PKKILVYGASFGGE 91 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~--------p~~~l~~~~~~~~~ 91 (498)
+...++|+|||||+|||+||++|++.|.+|+++|+ ...+||+|.+.... |.+...+.+.+...
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~---------~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L 77 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFER---------EKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESL 77 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEec---------CCCCcceeecCCCcCCCccccCCCCcccchhhhhhh
Confidence 33457999999999999999999999999999995 56689999765322 21111111111111
Q ss_pred Hhh-------hhcCCcccccc-cccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcE--EEEeE-EEEEe--CCEEEEEeCC
Q 042564 92 LED-------ARSYGWEVHEK-IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVK--LYEGE-GKIVG--PNEVEVTQLD 158 (498)
Q Consensus 92 ~~~-------~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~-~~~i~--~~~~~v~~~~ 158 (498)
..+ +..|.+..... ...+...+ . ...++.++++.+.+..++. +..++ +..++ .+.+.|...+
T Consensus 78 ~tn~p~~~m~f~dfp~~~~~~~~~~~~~~f-p----~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~ 152 (461)
T PLN02172 78 RTNLPRECMGYRDFPFVPRFDDESRDSRRY-P----SHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKN 152 (461)
T ss_pred hccCCHhhccCCCCCCCcccccccCcCCCC-C----CHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEc
Confidence 111 11222110000 00000000 0 1123445556666667766 44443 55554 3567777643
Q ss_pred C--ceEEEEcCeEEEcCC--CCCCCCCCCCCCc----ccChHHHhcccc-CCCeEEEEcCCHHHHHHHHHHHHCCCcEEE
Q 042564 159 G--TKLSYSAKHILIATG--SRAQRAPIPGQEL----AITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGSTVDL 229 (498)
Q Consensus 159 g--~~~~~~~d~liiAtG--~~p~~p~i~g~~~----~~~~~~~~~l~~-~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l 229 (498)
+ ...+..||+||+||| +.|++|.+||.+. .+.+.++..... ..|+|+|||+|.+|+|+|..|...+.+|++
T Consensus 153 ~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l 232 (461)
T PLN02172 153 SGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHI 232 (461)
T ss_pred CCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEE
Confidence 2 223568999999999 7899999999753 223333332222 468999999999999999999999999999
Q ss_pred EeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCC
Q 042564 230 LFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVG 309 (498)
Q Consensus 230 v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g 309 (498)
+.|...... . +.+......+..+..|..+..++ .|++.||+.+++|.||+|||++|+.+++ +.
T Consensus 233 ~~r~~~~~~-~---------~~~~~~~~~v~~~~~I~~~~~~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL--~~-- 295 (461)
T PLN02172 233 ASRASESDT-Y---------EKLPVPQNNLWMHSEIDTAHEDG---SIVFKNGKVVYADTIVHCTGYKYHFPFL--ET-- 295 (461)
T ss_pred EEeeccccc-c---------ccCcCCCCceEECCcccceecCC---eEEECCCCCccCCEEEECCcCCcccccc--Cc--
Confidence 998754211 0 01111223455566676664332 3888999999999999999999999984 32
Q ss_pred ceeCCCCCeEcCCC---------CCCC-CCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 310 VEVDQTGAVKVDEN---------SRTN-VPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 310 i~~~~~g~i~vd~~---------~~t~-~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
.|.+.+|++ +-.. .|+++.+|=.. .....+.+..|++++|+.+.|..
T Consensus 296 -----~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~-~~~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 296 -----NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPA-MGIQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred -----ccceeeCCCcchhhHHhhcCCCCCCcEEEEeccc-cccCchhHHHHHHHHHHHHcCCC
Confidence 233444432 1123 48999999653 23455788999999999998754
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=216.30 Aligned_cols=279 Identities=25% Similarity=0.361 Sum_probs=195.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
-|||+||||||||-+||++++|.|.+.-|+- ..+||+.+..-.|. +| +
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a-----------erfGGQvldT~~IE------------------Nf-I-- 258 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA-----------ERFGGQVLDTMGIE------------------NF-I-- 258 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh-----------hhhCCeeccccchh------------------he-e--
Confidence 5999999999999999999999999887774 45777753221111 00 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe-----CCEEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG-----PNEVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~-----~~~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
..+...-+++... ++...+++.|+++... +..+. .+...|++.+|. .+.++.+|+|||++
T Consensus 259 -sv~~teGpkl~~a-----------le~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGa--vLkaktvIlstGAr 324 (520)
T COG3634 259 -SVPETEGPKLAAA-----------LEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGA--VLKARTVILATGAR 324 (520)
T ss_pred -ccccccchHHHHH-----------HHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCc--eeccceEEEecCcc
Confidence 0011112223333 3333444555555432 33332 346788888886 89999999999999
Q ss_pred CCCCCCCCCCc--------ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHH
Q 042564 177 AQRAPIPGQEL--------AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVV 248 (498)
Q Consensus 177 p~~p~i~g~~~--------~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l 248 (498)
.+-.++||-+. +-+++..+ ...|+|+|||||.+|+|.|..|+..-..||+++..+.+- .-+.+
T Consensus 325 WRn~nvPGE~e~rnKGVayCPHCDGPL---F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------AD~VL 395 (520)
T COG3634 325 WRNMNVPGEDEYRNKGVAYCPHCDGPL---FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------ADAVL 395 (520)
T ss_pred hhcCCCCchHHHhhCCeeeCCCCCCcc---cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh------hHHHH
Confidence 99889998643 22222211 236899999999999999999998888999998755421 12345
Q ss_pred HHHHHhC-CCEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcC
Q 042564 249 ARNLEGR-GINLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD 321 (498)
Q Consensus 249 ~~~l~~~-Gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd 321 (498)
++.+... +|+++.|...++|.++++. ..+.+ .+|+ .++-+-|++-+|..||++| |+.. +++++.|-|.||
T Consensus 396 q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~W--Lkg~-vel~~rGEIivD 472 (520)
T COG3634 396 QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVD 472 (520)
T ss_pred HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhH--hhch-hhcCcCccEEEe
Confidence 5555544 8999999999999888655 23333 2344 4566779999999999999 5655 889999999999
Q ss_pred CCCCCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 322 ENSRTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 322 ~~~~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
....||+|+|||+|||... ++....|+.+|..|+-..+
T Consensus 473 ~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AF 511 (520)
T COG3634 473 ARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAF 511 (520)
T ss_pred cCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhh
Confidence 9999999999999999975 3444456666665555443
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=226.27 Aligned_cols=272 Identities=27% Similarity=0.400 Sum_probs=185.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
...+|+|||+||+|+++|..|++.|++|+++|+ ...+||... . .+|. |
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~---------~~~~GG~l~-~-gip~------------------~--- 183 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEA---------GPKLGGMMR-Y-GIPA------------------Y--- 183 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCeee-e-cCCC------------------c---
Confidence 346899999999999999999999999999994 344565421 1 1220 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~p 180 (498)
.+. .++... ....+.+.|+++..+.....+. .. + .....||.|++|||+.+ ..+
T Consensus 184 -----~~~-~~~~~~-----------~l~~~~~~Gv~~~~~~~~~~~~---~~---~--~~~~~~D~Vi~AtG~~~~~~~ 238 (564)
T PRK12771 184 -----RLP-REVLDA-----------EIQRILDLGVEVRLGVRVGEDI---TL---E--QLEGEFDAVFVAIGAQLGKRL 238 (564)
T ss_pred -----cCC-HHHHHH-----------HHHHHHHCCCEEEeCCEECCcC---CH---H--HHHhhCCEEEEeeCCCCCCcC
Confidence 000 111111 1123445788877754221110 00 0 01235899999999874 344
Q ss_pred CCCCCCc--ccChHHHhc------cccCCCeEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCC-CCCCCHHHHHHHHH
Q 042564 181 PIPGQEL--AITSDEALS------LEELPKRAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELP-LRGFDDEMRAVVAR 250 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~------l~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~-l~~~~~~~~~~l~~ 250 (498)
.+++.+. .+...++.. .....++++|+|+|.++++++..+.+++ .+|+++.+.+.. ++....++ +
T Consensus 239 ~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~-----~ 313 (564)
T PRK12771 239 PIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEI-----E 313 (564)
T ss_pred CCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHH-----H
Confidence 5666532 222222211 1224689999999999999999999988 679999886542 33333322 2
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCe-EE-----EEE----CC-------C--eEEEcCEEEEecCCCcCCCCCCccc-CCc
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEG-VK-----VIT----DH-------G--EEIVADVVLFATGRAPNTKRLNLKA-VGV 310 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~-~~-----v~~----~~-------g--~~i~~D~vi~a~G~~p~~~~l~l~~-~gi 310 (498)
...+.||++++++.+.++..++++ .. +.. .+ | .++++|.||+|+|..|+..++ ++ .++
T Consensus 314 ~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~--~~~~gl 391 (564)
T PRK12771 314 EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGL--ESVPGV 391 (564)
T ss_pred HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhh--hhccCc
Confidence 345679999999999999765433 11 221 12 2 369999999999999998774 43 567
Q ss_pred eeCCCCCeEcCC-CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHH
Q 042564 311 EVDQTGAVKVDE-NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358 (498)
Q Consensus 311 ~~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i 358 (498)
. +++|+|.||+ +++|++|+|||+||++.++.++..|+.+|+.||.+|
T Consensus 392 ~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i 439 (564)
T PRK12771 392 E-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNI 439 (564)
T ss_pred c-cCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHH
Confidence 7 7789999998 789999999999999988888999999999999987
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=203.19 Aligned_cols=225 Identities=20% Similarity=0.390 Sum_probs=183.4
Q ss_pred hCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC-CCCC--------CcccChHHHhcccc---C
Q 042564 134 NAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQ--------ELAITSDEALSLEE---L 200 (498)
Q Consensus 134 ~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~-i~g~--------~~~~~~~~~~~l~~---~ 200 (498)
+-||-+..|. ++.+|.....|.+.||. ++.||+++||||.+|.... +... ..+....|+.+++. .
T Consensus 269 nGGvAvl~G~kvvkid~~d~~V~LnDG~--~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~ae 346 (659)
T KOG1346|consen 269 NGGVAVLRGRKVVKIDEEDKKVILNDGT--TIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAE 346 (659)
T ss_pred cCceEEEeccceEEeecccCeEEecCCc--EeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhh
Confidence 3589999997 77899998889998987 9999999999999997653 2211 12455666666543 3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC----CCcEEEEeeCCCCCCC-CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGM----GSTVDLLFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV 275 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~----g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~ 275 (498)
.++|.|||+|+.|-|+|..|.+. |.+|+-+......+.. ++.-++++-.+.+++.||.++.|..|.++......+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl 426 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNL 426 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccce
Confidence 47999999999999999998753 7788877665544444 667888898999999999999999999998777778
Q ss_pred EEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCC-CCeEcCCCCCCCCCCeEEecccCCC---------CCChH
Q 042564 276 KVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQT-GAVKVDENSRTNVPSIWAVGDVTNR---------MNLTP 345 (498)
Q Consensus 276 ~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~-g~i~vd~~~~t~~~~iya~GD~~~~---------~~~~~ 345 (498)
.+.++||.++..|+|++|+|..||+++ .+..|+++|++ |++.||..++. ..|||++||.+.. ...+.
T Consensus 427 ~lkL~dG~~l~tD~vVvavG~ePN~el--a~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF~D~~LGrRRVehhd 503 (659)
T KOG1346|consen 427 VLKLSDGSELRTDLVVVAVGEEPNSEL--AEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACFEDGVLGRRRVEHHD 503 (659)
T ss_pred EEEecCCCeeeeeeEEEEecCCCchhh--cccccceeecccCcEEeeheeec-ccceeeecchhhhhcccccceeccccc
Confidence 999999999999999999999999998 67788988864 78999998875 4789999999863 23445
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 042564 346 VALMEGTCFAKTVFGGQP 363 (498)
Q Consensus 346 ~A~~~g~~aa~~i~~~~~ 363 (498)
.|.-.||.|++||.|..+
T Consensus 504 havvSGRLAGENMtgAak 521 (659)
T KOG1346|consen 504 HAVVSGRLAGENMTGAAK 521 (659)
T ss_pred cceeeceecccccccccC
Confidence 788899999999987543
|
|
| >PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-24 Score=173.56 Aligned_cols=110 Identities=32% Similarity=0.504 Sum_probs=101.3
Q ss_pred CcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHH
Q 042564 371 VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGI 450 (498)
Q Consensus 371 ~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~ 450 (498)
+|+++|++|++++||+||+||+++++ ++.+....+....++...+.+.+|+|+++|+++++|+|+|++|++|.|+|+.+
T Consensus 1 vP~~vft~p~ia~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~ 79 (110)
T PF02852_consen 1 VPTVVFTDPEIASVGLTEEEARKQGI-DYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINEL 79 (110)
T ss_dssp CEEEEESSSEEEEEES-HHHHHHHTS-GEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHH
T ss_pred CCEEEECCCceEEEccCHHHHHhccC-ceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHH
Confidence 58999999999999999999999854 68888888888888877777899999999999999999999999999999999
Q ss_pred HHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 451 AVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 451 ~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
+++|++++|++++.+.+++|||++|.+.+++
T Consensus 80 ~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 80 ALAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp HHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred HHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 9999999999999999999999999988753
|
; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B .... |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=199.82 Aligned_cols=306 Identities=22% Similarity=0.250 Sum_probs=160.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc-----Cch---hhHHHHHHhHhhHHHhhh
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR-----GCV---PKKILVYGASFGGELEDA 95 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~-----g~~---p~~~l~~~~~~~~~~~~~ 95 (498)
++|+|||||++||++|..|.+.|.+++++|+ ...+||.|.+. ||- ++ +... ....+..+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~---------~~~iGG~W~~~~~~~~g~~~~y~s-l~~n---~sk~~~~f 68 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEK---------SDDIGGLWRYTENPEDGRSSVYDS-LHTN---TSKEMMAF 68 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEES---------SSSSSGGGCHSTTCCCSEGGGSTT--B-S---S-GGGSCC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEec---------CCCCCccCeeCCcCCCCccccccc-eEEe---eCchHhcC
Confidence 5799999999999999999999999999997 77899998643 221 11 0000 01111122
Q ss_pred hcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcE--EEEeE-EEEE---eC----CEEEEEeC-CCceEEE
Q 042564 96 RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVK--LYEGE-GKIV---GP----NEVEVTQL-DGTKLSY 164 (498)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~-~~~i---~~----~~~~v~~~-~g~~~~~ 164 (498)
..|.++-+...-..-.++.++.+.+ .++.++. +..++ +..+ ++ +.+.|... +|+..+.
T Consensus 69 sdfp~p~~~p~f~~~~~v~~Yl~~Y-----------a~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~ 137 (531)
T PF00743_consen 69 SDFPFPEDYPDFPSHSEVLEYLESY-----------AEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETE 137 (531)
T ss_dssp TTS-HCCCCSSSEBHHHHHHHHHHH-----------HHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEE
T ss_pred CCcCCCCCCCCCCCHHHHHHHHHHH-----------HhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEE
Confidence 2333221111112223333333333 3333321 11222 2222 21 46888764 4555567
Q ss_pred EcCeEEEcCC--CCCCCCC--CCCCCc----ccChHHHhcccc-CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 165 SAKHILIATG--SRAQRAP--IPGQEL----AITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 165 ~~d~liiAtG--~~p~~p~--i~g~~~----~~~~~~~~~l~~-~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.||+||+||| +.|++|. +||.+. ++++.++.+.+. ..|+|+|||+|.+|+++|..+.....+|++..|...
T Consensus 138 ~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 138 EFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp EECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred EeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 7999999999 5688885 889763 456666655333 468999999999999999999999999999888764
Q ss_pred C-CCCC-------CH----------------HHHHHHH-HH--------------------------------HHhCCCE
Q 042564 236 P-LRGF-------DD----------------EMRAVVA-RN--------------------------------LEGRGIN 258 (498)
Q Consensus 236 ~-l~~~-------~~----------------~~~~~l~-~~--------------------------------l~~~Gv~ 258 (498)
. +++. |. .+.+.+. +. +....|.
T Consensus 218 wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~ 297 (531)
T PF00743_consen 218 WVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIK 297 (531)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 2211 00 0111110 00 0011111
Q ss_pred EEcCccEEEEEEeCCeEEEEECCCeEE-EcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCC---CCCCCCeEEe
Q 042564 259 LHPRTTIKELIKSEEGVKVITDHGEEI-VADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS---RTNVPSIWAV 334 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~~~v~~~~g~~i-~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~---~t~~~~iya~ 334 (498)
+. ..|.++. + -.|.+.||+++ ++|.||+|||++....+|+ +.-+.... +.+..-.++ .-..|++..+
T Consensus 298 vk--~~I~~~~--~--~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~--~~~~~~~~-~~~~LYk~vfp~~~~~ptLafI 368 (531)
T PF00743_consen 298 VK--PDIKRFT--E--NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLD--ESLIKVDD-NRVRLYKHVFPPNLDHPTLAFI 368 (531)
T ss_dssp -E--E-EEEE---S--SEEEETTSEEEEE-SEEEE---EE---TTB---TTTT-S-S-SSSSEETTTEETETTSTTEEES
T ss_pred cc--ccccccc--c--ccccccccccccccccccccccccccccccc--cccccccc-cccccccccccccccccccccc
Confidence 11 1122221 1 23678899875 6999999999999998853 33233322 223232322 1246899999
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 335 GDVTNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 335 GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
|=+.......+.+..|++++|+-+.|..
T Consensus 369 G~~~~~g~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 369 GLVQPFGSIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp S-SBSSS-HHHHHHHHHHHHHHHHTTSS
T ss_pred cccccccccccccccccccccccccccc
Confidence 9765433456789999999999998754
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=177.81 Aligned_cols=184 Identities=36% Similarity=0.478 Sum_probs=125.0
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccccc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHE 104 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~~ 104 (498)
||+|||||+||++||.+|++.+.+|+|+|+ . .+.|.+..|+|...+.............
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 59 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEK----------S--PGTPYNSGCIPSPLLVEIAPHRHEFLPA--------- 59 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESS----------S--SHHHHHHSHHHHHHHHHHHHHHHHHHHH---------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEec----------c--cccccccccccccccccccccccccccc---------
Confidence 799999999999999999999999999983 2 2456667788876665544322211100
Q ss_pred ccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEE-eEEEEEeCCEE-------EEE-eCCCceEEEEcCeEEEcCCC
Q 042564 105 KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE-GEGKIVGPNEV-------EVT-QLDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~-~~~~~i~~~~~-------~v~-~~~g~~~~~~~d~liiAtG~ 175 (498)
..+ .+.+.+.+.++++.. ..+..++.... .+. ...+...++.||+||+|||+
T Consensus 60 -----------------~~~--~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 60 -----------------RLF--KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp -----------------HHG--HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred -----------------ccc--ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcc
Confidence 000 111222334666633 33444433211 221 12334568999999999999
Q ss_pred CCCCCCCCCCC------cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHH
Q 042564 176 RAQRAPIPGQE------LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA 249 (498)
Q Consensus 176 ~p~~p~i~g~~------~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~ 249 (498)
.|+.|++||.+ ...++.++......+++++|||
T Consensus 121 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG----------------------------------------- 159 (201)
T PF07992_consen 121 RPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG----------------------------------------- 159 (201)
T ss_dssp EEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES-----------------------------------------
T ss_pred ccceeecCCCccccccccccccccccccccccccccccc-----------------------------------------
Confidence 99999999863 2345555665555677999999
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
...+. +..+++++++|++.||+++||+.|
T Consensus 160 --------------------------------------------------~~~l~-~~~~~~~~~~g~i~vd~~~~t~~~ 188 (201)
T PF07992_consen 160 --------------------------------------------------TEFLA-EKLGVELDENGFIKVDENLQTSVP 188 (201)
T ss_dssp --------------------------------------------------TTTST-HHTTSTBTTTSSBEEBTTSBBSST
T ss_pred --------------------------------------------------ccccc-cccccccccccccccccccccccc
Confidence 44432 778899999999999999999999
Q ss_pred CeEEecccCCC
Q 042564 330 SIWAVGDVTNR 340 (498)
Q Consensus 330 ~iya~GD~~~~ 340 (498)
||||+|||++.
T Consensus 189 ~Iya~GD~a~~ 199 (201)
T PF07992_consen 189 GIYAAGDCAGI 199 (201)
T ss_dssp TEEE-GGGBEE
T ss_pred ccccccccccc
Confidence 99999999863
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-21 Score=191.08 Aligned_cols=279 Identities=28% Similarity=0.362 Sum_probs=191.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+|.||||||||+++|..|++.|++|+++|+ ....||...+ | ||.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~---------~~~~GGll~y-G-IP~------------------------ 168 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFER---------VALDGGLLLY-G-IPD------------------------ 168 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCC---------cCCCceeEEe-c-Cch------------------------
Confidence 6899999999999999999999999999995 4555665321 1 331
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRAPI 182 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p~i 182 (498)
+.. -..+.....+++++.|++++.+..... .++.+ ...-.||.++++||+. |+..++
T Consensus 169 ----~kl----------~k~i~d~~i~~l~~~Gv~~~~~~~vG~-----~it~~---~L~~e~Dav~l~~G~~~~~~l~i 226 (457)
T COG0493 169 ----FKL----------PKDILDRRLELLERSGVEFKLNVRVGR-----DITLE---ELLKEYDAVFLATGAGKPRPLDI 226 (457)
T ss_pred ----hhc----------cchHHHHHHHHHHHcCeEEEEcceECC-----cCCHH---HHHHhhCEEEEeccccCCCCCCC
Confidence 000 011122233556778899988653321 12111 1134569999999954 777788
Q ss_pred CCCC--cccChHHHhc------cc-----cC----CCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCCC--CCCCCH
Q 042564 183 PGQE--LAITSDEALS------LE-----EL----PKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELP--LRGFDD 242 (498)
Q Consensus 183 ~g~~--~~~~~~~~~~------l~-----~~----~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~--l~~~~~ 242 (498)
||.+ .++...+++. +. .. .++++|||+|.++++++....+.|+ +|+.+.+...- ...++.
T Consensus 227 ~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~ 306 (457)
T COG0493 227 PGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPT 306 (457)
T ss_pred CCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccc
Confidence 8875 2333333221 11 11 2899999999999999999889998 67777532221 111222
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEE-----EC--------------CCe--EEEcCEEEEecCCCcC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVI-----TD--------------HGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~-----~~--------------~g~--~i~~D~vi~a~G~~p~ 299 (498)
.-.+...+...++|+...+.....++..++++ + .+. .. .|+ .+.+|.|+.|+|+.++
T Consensus 307 ~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~ 386 (457)
T COG0493 307 WAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGD 386 (457)
T ss_pred cchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCC
Confidence 22344556677889988888888888765443 2 121 11 122 5779999999999998
Q ss_pred CCCCCcccCCceeCCCCCeEcCCCC-CCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 300 TKRLNLKAVGVEVDQTGAVKVDENS-RTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 300 ~~~l~l~~~gi~~~~~g~i~vd~~~-~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
.........++..+..|.|.+++.+ +|+.|++||.||+..+..+...|+.+|+.+|+.|-
T Consensus 387 ~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 387 ATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred cccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHHhhh
Confidence 7653233346788889999999998 99999999999999988899999999999998763
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=166.08 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=119.5
Q ss_pred EEEcCCHHHHHHH-HHHH----HCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEE-E
Q 042564 205 VVLGGGYIAVEFA-SIWR----GMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKV-I 278 (498)
Q Consensus 205 ~ViG~G~~g~e~a-~~l~----~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v-~ 278 (498)
.|++.+.+|+|.+ ..+. ++|++|+++...+..++. .++.+.+.+.+++.|++++.++.|.++..+++++.. .
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG--~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~ 296 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG--LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVW 296 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch--HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence 7789999999998 7775 479999999988887765 478889999999999999999999999877665443 3
Q ss_pred ECCCe--EEEcCEEEEecCCCcCCCCC---------------------------------CcccCCceeCCCCCeEcCCC
Q 042564 279 TDHGE--EIVADVVLFATGRAPNTKRL---------------------------------NLKAVGVEVDQTGAVKVDEN 323 (498)
Q Consensus 279 ~~~g~--~i~~D~vi~a~G~~p~~~~l---------------------------------~l~~~gi~~~~~g~i~vd~~ 323 (498)
..+++ .+.+|.||+|+|+.++..+. ++...|+.+|+. ...+|..
T Consensus 297 ~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~~~~ 375 (422)
T PRK05329 297 TRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPLDSQ 375 (422)
T ss_pred eeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCcccCC
Confidence 33443 58999999999986554320 124456666654 5666777
Q ss_pred CCCCCCCeEEecccCCCCCCh------HHHHHHHHHHHHHHhC
Q 042564 324 SRTNVPSIWAVGDVTNRMNLT------PVALMEGTCFAKTVFG 360 (498)
Q Consensus 324 ~~t~~~~iya~GD~~~~~~~~------~~A~~~g~~aa~~i~~ 360 (498)
.++..+|+||+|++.+++..+ -+|+..|-.|+++|..
T Consensus 376 g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 376 GGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAE 418 (422)
T ss_pred CCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence 778899999999999986554 3788889899988864
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-18 Score=178.87 Aligned_cols=280 Identities=16% Similarity=0.204 Sum_probs=156.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHH-hhhh-cCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGEL-EDAR-SYG 99 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~-~~~~-~~g 99 (498)
..++|+||||||||++||+.|++.|++|+++|+ ....|+.-... -| ......+...+ ...+ .+|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~---------~~i~gl~~~~~--~~---i~~~~~~~~~L~er~p~~~G 447 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG---------LKITLLPFDVH--KP---IKFWHEYKNLLSERMPRGFG 447 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc---------ccccccccccc--cc---cchhhhhccchhhhccccCC
Confidence 357899999999999999999999999999994 11111110000 00 00000001111 0111 021
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC-CC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS-RA 177 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~-~p 177 (498)
-.......++|.. ..++. ....+.. .++.++.+..... .++.++ .....||.|+||||+ .|
T Consensus 448 G~~~yGIp~R~~k------~~l~~----i~~il~~g~~v~~~~gv~lG~-----dit~ed--l~~~gyDAV~IATGA~kp 510 (1028)
T PRK06567 448 GVAEYGITVRWDK------NNLDI----LRLILERNNNFKYYDGVALDF-----NITKEQ--AFDLGFDHIAFCIGAGQP 510 (1028)
T ss_pred cccccCccccchH------HHHHH----HHHHHhcCCceEEECCeEECc-----cCCHHH--HhhcCCCEEEEeCCCCCC
Confidence 1111111133321 11111 1122222 2455554432111 111111 124679999999999 69
Q ss_pred CCCCCCCCCc--ccChHHHhccc--------------cCCCeEEEEcCCHHHHHHHHHHHH-------------------
Q 042564 178 QRAPIPGQEL--AITSDEALSLE--------------ELPKRAVVLGGGYIAVEFASIWRG------------------- 222 (498)
Q Consensus 178 ~~p~i~g~~~--~~~~~~~~~l~--------------~~~~~v~ViG~G~~g~e~a~~l~~------------------- 222 (498)
+.+++||.+. +++..+++... ...++|+|||||.+|+|+|.....
T Consensus 511 r~L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~ 590 (1028)
T PRK06567 511 KVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLT 590 (1028)
T ss_pred CCCCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcc
Confidence 9999999753 55555543211 124799999999999999983221
Q ss_pred --------------------------------CCCcEEEEeeCCCC-CCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 223 --------------------------------MGSTVDLLFRKELP-LRGFDDEMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 223 --------------------------------~g~~V~lv~~~~~~-l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
.|. |++++|...- +|.... -.+.+. ...+.||.++++....+|.
T Consensus 591 ~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~-~~eEv~-~A~eEGV~f~~~~~P~~i~ 667 (1028)
T PRK06567 591 EEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKL-NHEELI-YALALGVDFKENMQPLRIN 667 (1028)
T ss_pred cccHHHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCCCC-CHHHHH-HHHHcCcEEEecCCcEEEE
Confidence 232 8888876532 222100 012222 2346799999999999987
Q ss_pred EeCCe--EEEEEC--------------C-C---------------eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCC
Q 042564 270 KSEEG--VKVITD--------------H-G---------------EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGA 317 (498)
Q Consensus 270 ~~~~~--~~v~~~--------------~-g---------------~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~ 317 (498)
.++++ ..+++. + + .+++||.||+|+|..||+.+. ..
T Consensus 668 ~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~---------~~--- 735 (1028)
T PRK06567 668 VDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD---------ED--- 735 (1028)
T ss_pred ecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc---------cc---
Confidence 65432 212110 1 1 368899999999999999862 00
Q ss_pred eEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHH
Q 042564 318 VKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358 (498)
Q Consensus 318 i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i 358 (498)
+..+-++.+++|+- .+..|+.+|+.++.+|
T Consensus 736 ---~~s~~~d~~~~f~G--------tvv~A~as~k~~~~~i 765 (1028)
T PRK06567 736 ---KYSYFGDCNPKYSG--------SVVKALASSKEGYDAI 765 (1028)
T ss_pred ---ccccccCCCCcccc--------HHHHHHHHHHhHHHHH
Confidence 11233345556654 6678999999999988
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-18 Score=153.75 Aligned_cols=188 Identities=23% Similarity=0.264 Sum_probs=107.4
Q ss_pred EEECCChhHHHHHHHHHhCCCc-EEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccccc
Q 042564 27 FVIGAGSGGVRAARFSANFGAK-VGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEK 105 (498)
Q Consensus 27 vIIGgG~aGl~aA~~l~~~g~~-V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~~~ 105 (498)
+||||||+||++|.+|.+.|.+ |+|+|+ ...+||.+......++- .. +.... ..++.. ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~---------~~~~Gg~w~~~~~~~~~---~~---~~~~~--~~~~~~--~~ 61 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLER---------NDRPGGVWRRYYSYTRL---HS---PSFFS--SDFGLP--DF 61 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEES---------SSSSTTHHHCH-TTTT----BS---SSCCT--GGSS----CC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeC---------CCCCCCeeEEeCCCCcc---cc---Ccccc--ccccCC--cc
Confidence 7999999999999999999999 999995 45788887543211100 00 00000 000000 00
Q ss_pred cccCHHHHHHH----HHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEeCCCceEEEEcCeEEEcCCC--C
Q 042564 106 IDFDWKKLLQK----KTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQLDGTKLSYSAKHILIATGS--R 176 (498)
Q Consensus 106 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~~~g~~~~~~~d~liiAtG~--~ 176 (498)
..+.+...-.. .....+++.++++.+.++.++++..++ +..+ +.+.+.|+..++ +.+++|+||+|||. .
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~--~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 62 ESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDG--RTIRADRVVLATGHYSH 139 (203)
T ss_dssp CHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS---EEEEEEEEE---SSCS
T ss_pred cccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEec--ceeeeeeEEEeeeccCC
Confidence 01111111000 001123445567777777788866654 3333 445599988887 38889999999994 8
Q ss_pred CCCCCCCC-CC-cccChHHHhcccc-CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 177 AQRAPIPG-QE-LAITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 177 p~~p~i~g-~~-~~~~~~~~~~l~~-~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
|+.|.++| .+ ..+++.++..... ..++|+|||+|.+|++++..|.+.|.+|+++.|++.
T Consensus 140 p~~p~~~g~~~~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 140 PRIPDIPGSAFRPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp B---S-TTGGCSEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCccccccccccceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 99999999 32 3445555444333 368999999999999999999999999999999864
|
... |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-18 Score=177.66 Aligned_cols=275 Identities=23% Similarity=0.353 Sum_probs=171.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
-++|.|||+|||||+||-+|-+.|+-|+++|+ ...+||.. .||++
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer---------~dr~ggll-------------------------~ygip- 1829 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYER---------SDRVGGLL-------------------------MYGIP- 1829 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEe---------cCCcCcee-------------------------eecCC-
Confidence 46899999999999999999999999999995 55666652 12222
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p~ 181 (498)
.....+... +..-+++.+.||+++.++.. ..+ |.. | ...-.+|.+|+|+|++ |+..+
T Consensus 1830 ----nmkldk~vv----------~rrv~ll~~egi~f~tn~ei--gk~---vs~-d--~l~~~~daiv~a~gst~prdlp 1887 (2142)
T KOG0399|consen 1830 ----NMKLDKFVV----------QRRVDLLEQEGIRFVTNTEI--GKH---VSL-D--ELKKENDAIVLATGSTTPRDLP 1887 (2142)
T ss_pred ----ccchhHHHH----------HHHHHHHHhhCceEEeeccc--ccc---ccH-H--HHhhccCeEEEEeCCCCCcCCC
Confidence 222222111 11124556679999886422 111 322 2 1245689999999976 88888
Q ss_pred CCCCCc--ccChH---------------HHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCC---------
Q 042564 182 IPGQEL--AITSD---------------EALSLEELPKRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKE--------- 234 (498)
Q Consensus 182 i~g~~~--~~~~~---------------~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~--------- 234 (498)
+||-+. +.-.. +...+....|+|+|||||.+|.++...-.++|++ |.-++--+
T Consensus 1888 v~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~ 1967 (2142)
T KOG0399|consen 1888 VPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPD 1967 (2142)
T ss_pred CCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCC
Confidence 998652 11011 1112334578999999999999998777777764 33333222
Q ss_pred CCCCCCCH----HH-HHHHHHHHHhCCCEEEc------------CccEEEE-------EEeCCe-EEE-EEC-CCeEEEc
Q 042564 235 LPLRGFDD----EM-RAVVARNLEGRGINLHP------------RTTIKEL-------IKSEEG-VKV-ITD-HGEEIVA 287 (498)
Q Consensus 235 ~~l~~~~~----~~-~~~l~~~l~~~Gv~i~~------------~~~v~~i-------~~~~~~-~~v-~~~-~g~~i~~ 287 (498)
.++|.++. +. .+...+.+ |-+.++ +..|+.+ ++++.+ ... +.. +.+.++|
T Consensus 1968 npwpqwprvfrvdygh~e~~~~~---g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~ea 2044 (2142)
T KOG0399|consen 1968 NPWPQWPRVFRVDYGHAEAKEHY---GSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEA 2044 (2142)
T ss_pred CCCccCceEEEeecchHHHHHHh---CCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeec
Confidence 12332211 00 01111111 211111 1122221 222222 111 121 2346899
Q ss_pred CEEEEecCCCcCCCCCCcccCCceeCCCCCeEcC-CCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHH
Q 042564 288 DVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD-ENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358 (498)
Q Consensus 288 D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i 358 (498)
|+||+|.|+....... .++.+++.++++.|.+- +.+.|.++.|||+|||..+..+..+|+++||-+|+.+
T Consensus 2045 dlv~lamgf~gpe~~~-~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2045 DLVILAMGFVGPEKSV-IEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred ceeeeeccccCcchhh-hhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHH
Confidence 9999999987665543 57788999988776654 5689999999999999999999999999999999875
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-17 Score=159.96 Aligned_cols=256 Identities=22% Similarity=0.265 Sum_probs=136.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCC-CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFG-AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.||+|+||.||++|+.|..|.+.+ .+++++|+ .+.....-|..+ .++.+. ...+...-..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~------~~~f~Wh~gmll-----------~~~~~q--~~fl~Dlvt~ 62 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLER------RPSFSWHPGMLL-----------PGARMQ--VSFLKDLVTL 62 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-------SS--TTGGG-------------SS-B-S--S-TTSSSSTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEec------CCCCCcCCccCC-----------CCCccc--cccccccCcC
Confidence 489999999999999999999855 89999994 222111112111 010000 0000010000
Q ss_pred cccccccCHHHHHHHHHH------------HHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC------CEEEEEe--CCCc
Q 042564 102 VHEKIDFDWKKLLQKKTD------------EILRLNGIYKRLLSNAGVKLYEGE-GKIVGP------NEVEVTQ--LDGT 160 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~------~~~~v~~--~~g~ 160 (498)
......+.|..++..... ...++..+++....+..-.+..+. +..|+. ..+.|.+ .+|.
T Consensus 63 ~~P~s~~sflnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~ 142 (341)
T PF13434_consen 63 RDPTSPFSFLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGD 142 (341)
T ss_dssp T-TTSTTSHHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-
T ss_pred cCCCCcccHHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCC
Confidence 111123444333322211 113455666666655554355554 444432 1367765 4565
Q ss_pred eEEEEcCeEEEcCCCCCCCCCC----CCCCcccChHHHhcc---ccCCCeEEEEcCCHHHHHHHHHHHHCCC--cEEEEe
Q 042564 161 KLSYSAKHILIATGSRAQRAPI----PGQELAITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRGMGS--TVDLLF 231 (498)
Q Consensus 161 ~~~~~~d~liiAtG~~p~~p~i----~g~~~~~~~~~~~~l---~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv~ 231 (498)
...+.+++||+|||..|.+|.. ++.+.++.+.++... ...+++|+|||||.+|.|++..|.+.+. +|+++.
T Consensus 143 ~~~~~ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~ 222 (341)
T PF13434_consen 143 GETYRARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWIS 222 (341)
T ss_dssp EEEEEESEEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEE
T ss_pred eeEEEeCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEE
Confidence 6799999999999999999853 222445555555432 3356899999999999999999988764 899999
Q ss_pred eCCCCCCC---------CCHHHHHH-------------------------------H-----HHHH-HhCCCEEEcCccE
Q 042564 232 RKELPLRG---------FDDEMRAV-------------------------------V-----ARNL-EGRGINLHPRTTI 265 (498)
Q Consensus 232 ~~~~~l~~---------~~~~~~~~-------------------------------l-----~~~l-~~~Gv~i~~~~~v 265 (498)
|+..+.+. ++++..+. + ++.+ .+..+.++.+++|
T Consensus 223 R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v 302 (341)
T PF13434_consen 223 RSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEV 302 (341)
T ss_dssp SSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEE
T ss_pred CCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEE
Confidence 98865432 23332221 1 1122 2345889999999
Q ss_pred EEEEEeCC-eEEEEECC-----CeEEEcCEEEEecCCC
Q 042564 266 KELIKSEE-GVKVITDH-----GEEIVADVVLFATGRA 297 (498)
Q Consensus 266 ~~i~~~~~-~~~v~~~~-----g~~i~~D~vi~a~G~~ 297 (498)
++++..++ ++.+.+.+ ..++++|.||+|||++
T Consensus 303 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 303 TSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred EEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 99998885 67777653 2368899999999975
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.7e-18 Score=170.03 Aligned_cols=189 Identities=22% Similarity=0.228 Sum_probs=122.0
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCc-EEEEccCCCCCCCCcCCCccccccc---cCc---hhhHHHHHHhHhhHHH
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAK-VGICELPFHPISSEVIGGVGGTCVI---RGC---VPKKILVYGASFGGEL 92 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~-V~lvek~~~~~~~~~~~~~GG~~~~---~g~---~p~~~l~~~~~~~~~~ 92 (498)
+..++||+|||||++|+++|++|++.|.. ++++|| ...+||+|.+ .++ .|+..+
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek---------~~~~Gg~W~~~ry~~l~~~~p~~~~---------- 65 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEK---------RDDVGGTWRYNRYPGLRLDSPKWLL---------- 65 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEc---------cCCcCCcchhccCCceEECCchhee----------
Confidence 34568999999999999999999999998 999996 5678888643 111 121111
Q ss_pred hhhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE--EEEE-eCCEEEEEeCCCceEEEEcCeE
Q 042564 93 EDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE--GKIV-GPNEVEVTQLDGTKLSYSAKHI 169 (498)
Q Consensus 93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~--~~~i-~~~~~~v~~~~g~~~~~~~d~l 169 (498)
.++.+.+... .....+..+..+. ..+++.+-....+.+.... +... +...+.|+.+++...++.+|.|
T Consensus 66 -~~~~~p~~~~-~~~~~~~~~~~y~-------~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~v 136 (443)
T COG2072 66 -GFPFLPFRWD-EAFAPFAEIKDYI-------KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFV 136 (443)
T ss_pred -ccCCCccCCc-ccCCCcccHHHHH-------HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEE
Confidence 1111111100 0000111111111 1222222222233333332 2222 3357888887765333779999
Q ss_pred EEcCC--CCCCCCCCCCCCc----ccChHHHhcc-ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 170 LIATG--SRAQRAPIPGQEL----AITSDEALSL-EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 170 iiAtG--~~p~~p~i~g~~~----~~~~~~~~~l-~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
|+||| +.|++|.++|.+. ++++.++.+- .-.+|+|+|||+|.+|++++..|.+.|.+|+++.|++..
T Consensus 137 V~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 137 VVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred EEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 99999 7799999999864 4455555443 335799999999999999999999999999999998854
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-17 Score=143.16 Aligned_cols=184 Identities=22% Similarity=0.293 Sum_probs=117.4
Q ss_pred CEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCCCCCC-cc---cChHHHhcc---ccCCCeEEEEcCCHHHHHHHHHHHH
Q 042564 150 NEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQE-LA---ITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRG 222 (498)
Q Consensus 150 ~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i~g~~-~~---~~~~~~~~l---~~~~~~v~ViG~G~~g~e~a~~l~~ 222 (498)
...-+.+.+|. .+.|++|+++||++|..-. .|.+ .+ .+.+....+ ....|.|.|+|.|-+++|++..+.
T Consensus 79 ~ehci~t~~g~--~~ky~kKOG~tg~kPklq~-E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk- 154 (334)
T KOG2755|consen 79 SEHCIHTQNGE--KLKYFKLCLCTGYKPKLQV-EGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK- 154 (334)
T ss_pred ccceEEecCCc--eeeEEEEEEecCCCcceee-cCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh-
Confidence 34445566766 8899999999999997642 2222 21 233332222 234689999999999999998876
Q ss_pred CCCcEEEEeeCCCCCCC-CCHHHHHHHHHHHHhC----CCEE--------EcC-----------------c---------
Q 042564 223 MGSTVDLLFRKELPLRG-FDDEMRAVVARNLEGR----GINL--------HPR-----------------T--------- 263 (498)
Q Consensus 223 ~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~----Gv~i--------~~~-----------------~--------- 263 (498)
+.+|+|....+.+... +++.+.+.+...+... -+.+ +.+ -
T Consensus 155 -~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~ese 233 (334)
T KOG2755|consen 155 -ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESE 233 (334)
T ss_pred -cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhh
Confidence 5678888887776554 6777666655444110 0000 000 0
Q ss_pred ---------cEEEEEEeCCeEEEEEC---CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 264 ---------TIKELIKSEEGVKVITD---HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 264 ---------~v~~i~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
.+..+....+...++.. .+ ..+.+|.+++|+|..||.++ .-...++..++|++.||+.|+|+.|
T Consensus 234 er~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~--~~~~~lq~~edggikvdd~m~tslp 311 (334)
T KOG2755|consen 234 NRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEW--AMNKMLQITEDGGIKVDDAMETSLP 311 (334)
T ss_pred hhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceE--EecChhhhccccCeeehhhcccccc
Confidence 00000000000111111 11 25779999999999999995 3444567778899999999999999
Q ss_pred CeEEecccCCC
Q 042564 330 SIWAVGDVTNR 340 (498)
Q Consensus 330 ~iya~GD~~~~ 340 (498)
++||+||+...
T Consensus 312 dvFa~gDvctt 322 (334)
T KOG2755|consen 312 DVFAAGDVCTT 322 (334)
T ss_pred ceeeecceecc
Confidence 99999999873
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-16 Score=155.42 Aligned_cols=299 Identities=19% Similarity=0.207 Sum_probs=168.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchh---hHHHH-HHhHhhHHHhhhhc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVP---KKILV-YGASFGGELEDARS 97 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p---~~~l~-~~~~~~~~~~~~~~ 97 (498)
...+|+|||||||||++|+.|.+.|++|+++|+ ...+||.|.+.--.. +.++- .-.........+++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr---------~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~d 75 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFER---------TDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSD 75 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEe---------cCCccceEeecCcccccccchhhhhhccCChhhhcCCC
Confidence 356999999999999999999999999999996 677899886542111 11000 00112222223333
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCc----EEEEeEEE--EEeCCEEEEEeCCCc--eEEEEcCeE
Q 042564 98 YGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGV----KLYEGEGK--IVGPNEVEVTQLDGT--KLSYSAKHI 169 (498)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv----~~~~~~~~--~i~~~~~~v~~~~g~--~~~~~~d~l 169 (498)
|.+.-.. ...+... .++.++++.+.+..++ .+-...+. .++.+.|.|...+.. ....-+|.|
T Consensus 76 fpf~~~~------~~~~p~~----~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~V 145 (448)
T KOG1399|consen 76 FPFPERD------PRYFPSH----REVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAV 145 (448)
T ss_pred CCCcccC------cccCCCH----HHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEE
Confidence 3332210 1111111 1223334444444443 22221112 222257888775432 257789999
Q ss_pred EEcCCCC--CCCCCCCCC--Cc----ccChHHHhcccc-CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCC
Q 042564 170 LIATGSR--AQRAPIPGQ--EL----AITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF 240 (498)
Q Consensus 170 iiAtG~~--p~~p~i~g~--~~----~~~~~~~~~l~~-~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~ 240 (498)
++|||-. |++|.++|. +. ++++.++...+. ..|+|+|||.|.+|+|++..+.....+|++..+ .......
T Consensus 146 vVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~~ 224 (448)
T KOG1399|consen 146 VVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHVE 224 (448)
T ss_pred EEcccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-ccccccc
Confidence 9999965 888988883 22 455566554332 358999999999999999999988888888765 2000000
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~v 320 (498)
.+. . ...++..+. .+..+..++ .+...++....+|.+|+|||+.-...++. ..+ .+.+
T Consensus 225 ~~~-------~-~~~~~~~~~--~i~~~~e~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~--~~~-------~~~~ 282 (448)
T KOG1399|consen 225 PPE-------I-LGENLWQVP--SIKSFTEDG---SVFEKGGPVERVDRIIFCTGYKYKFPFLE--TLG-------LGTV 282 (448)
T ss_pred ccc-------e-eecceEEcc--ccccccCcc---eEEEcCceeEEeeeEEEeeeeEeecceec--cCC-------ceee
Confidence 000 0 011222221 144442222 24455666788999999999988887742 211 1222
Q ss_pred CCCC-----CCCCCCeEEecccCCCC----CChHHHHHHHHHHHHHHhCCC
Q 042564 321 DENS-----RTNVPSIWAVGDVTNRM----NLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 321 d~~~-----~t~~~~iya~GD~~~~~----~~~~~A~~~g~~aa~~i~~~~ 362 (498)
++.. ..-.|..++-|...... ...+....|++.+++.+.|..
T Consensus 283 ~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~ 333 (448)
T KOG1399|consen 283 RDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRL 333 (448)
T ss_pred ccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCC
Confidence 2211 12234444444222111 234566788999999888764
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.1e-17 Score=146.87 Aligned_cols=282 Identities=20% Similarity=0.305 Sum_probs=175.4
Q ss_pred CCccEEEECCChhHHHHHHHHHh-CC-CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN-FG-AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~-~g-~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
.++.|+|||||.+|+.+|..+.+ .| -+|.+||....|+-+|...-+||..- .+....+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~------------------~l~~srr-- 97 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLK------------------SLDSSRR-- 97 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchh------------------hhhhccC--
Confidence 57899999999999999999987 44 49999997666666654444444421 0000000
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
...+ +--.+..++...+..+++..-.|.+++|+ +++||++|||+|..-..
T Consensus 98 ------~~a~----------------------liP~~a~wi~ekv~~f~P~~N~v~t~gg~--eIsYdylviA~Giql~y 147 (446)
T KOG3851|consen 98 ------KQAS----------------------LIPKGATWIKEKVKEFNPDKNTVVTRGGE--EISYDYLVIAMGIQLDY 147 (446)
T ss_pred ------cccc----------------------cccCCcHHHHHHHHhcCCCcCeEEccCCc--EEeeeeEeeeeeceecc
Confidence 0000 00011112222223346666777777876 99999999999988777
Q ss_pred CCCCCCCc---------ccChH-------HHhcccc------CCC-eEEEEcCCHHHHHHHHH-HHHCCC--cEEEEeeC
Q 042564 180 APIPGQEL---------AITSD-------EALSLEE------LPK-RAVVLGGGYIAVEFASI-WRGMGS--TVDLLFRK 233 (498)
Q Consensus 180 p~i~g~~~---------~~~~~-------~~~~l~~------~~~-~v~ViG~G~~g~e~a~~-l~~~g~--~V~lv~~~ 233 (498)
-.|+|+.. .++.. .+.+.+. .|. .+-..|+-.-.+-+++. ++++|. ++.++...
T Consensus 148 ~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~T 227 (446)
T KOG3851|consen 148 GKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNT 227 (446)
T ss_pred chhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEec
Confidence 77777521 11111 1111111 122 22234555555555554 556665 45566554
Q ss_pred CCCCCC-C-CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEE-ECC-Ce--EEEcCEEEEecCCCcCCCCCCccc
Q 042564 234 ELPLRG-F-DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVI-TDH-GE--EIVADVVLFATGRAPNTKRLNLKA 307 (498)
Q Consensus 234 ~~~l~~-~-~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~-~~~-g~--~i~~D~vi~a~G~~p~~~~l~l~~ 307 (498)
. ++. | -+...+.+++..++++|++....++.++..+++....+ +.+ |. +++++++-+.....+... +.+
T Consensus 228 s--l~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~---l~~ 302 (446)
T KOG3851|consen 228 S--LPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEV---LAN 302 (446)
T ss_pred C--ccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhh---hhc
Confidence 3 333 2 35577889999999999999999999987766543332 222 43 578888877666555443 344
Q ss_pred CCceeCCCCCeEcCC-CCCC-CCCCeEEecccCCCCCC--hHHHHHHHHHHHHHHh
Q 042564 308 VGVEVDQTGAVKVDE-NSRT-NVPSIWAVGDVTNRMNL--TPVALMEGTCFAKTVF 359 (498)
Q Consensus 308 ~gi~~~~~g~i~vd~-~~~t-~~~~iya~GD~~~~~~~--~~~A~~~g~~aa~~i~ 359 (498)
+.+ .|+.|++.||. .+|. ..||||+||||.+.|.. +..+..|..++-+|+.
T Consensus 303 s~~-adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 303 SDL-ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred Ccc-cCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHH
Confidence 544 47889999997 5664 89999999999997544 3334567778888864
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-15 Score=140.40 Aligned_cols=324 Identities=20% Similarity=0.191 Sum_probs=184.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCC-CcEEEEccCCCCCCCCcCCCccccccccCc---hhh-HHHH---HHhHhhHH
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFG-AKVGICELPFHPISSEVIGGVGGTCVIRGC---VPK-KILV---YGASFGGE 91 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek~~~~~~~~~~~~~GG~~~~~g~---~p~-~~l~---~~~~~~~~ 91 (498)
|+..+|+|.||-||+-|+.|+.|...+ .+++.+|+ .+......|..+ .|| +|- |-|. .....+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLer------kp~F~WHpGmll-egstlQv~FlkDLVTl~~PTs~ySF 74 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLER------KPDFSWHPGMLL-EGSTLQVPFLKDLVTLVDPTSPYSF 74 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEec------CCCCCcCCCccc-CCccccccchhhhccccCCCCchHH
Confidence 556799999999999999999999854 78999994 333333334422 121 110 0000 00000111
Q ss_pred HhhhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EE---EEeCCE---EEEEeCCCceEEE
Q 042564 92 LEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GK---IVGPNE---VEVTQLDGTKLSY 164 (498)
Q Consensus 92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~---~i~~~~---~~v~~~~g~~~~~ 164 (498)
++.+...+ +...+-+.+.+.-.+ .++..+.+...... -.+..++ +. .++.+. ..+.+.++. .+
T Consensus 75 LNYL~~h~----RLy~Fl~~e~f~i~R---~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~--~y 144 (436)
T COG3486 75 LNYLHEHG----RLYEFLNYETFHIPR---REYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGT--VY 144 (436)
T ss_pred HHHHHHcc----hHhhhhhhhcccccH---HHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCc--EE
Confidence 11111100 000000000000011 22333333333222 1122222 22 222222 224444554 89
Q ss_pred EcCeEEEcCCCCCCCCC----CCCCCcccChHHHhc-cccC--CCeEEEEcCCHHHHHHHHHHHHC----CCcEEEEeeC
Q 042564 165 SAKHILIATGSRAQRAP----IPGQELAITSDEALS-LEEL--PKRAVVLGGGYIAVEFASIWRGM----GSTVDLLFRK 233 (498)
Q Consensus 165 ~~d~liiAtG~~p~~p~----i~g~~~~~~~~~~~~-l~~~--~~~v~ViG~G~~g~e~a~~l~~~----g~~V~lv~~~ 233 (498)
+++.|||.+|.+|.+|+ +++ +.++.+.++.+ ..++ .++|.|||+|.+|.|+-..|... ..++.|+.|+
T Consensus 145 ~ar~lVlg~G~~P~IP~~f~~l~~-~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~ 223 (436)
T COG3486 145 RARNLVLGVGTQPYIPPCFRSLIG-ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRS 223 (436)
T ss_pred EeeeEEEccCCCcCCChHHhCcCc-cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeecc
Confidence 99999999999999995 333 33555555543 3222 34599999999999998887653 4468899999
Q ss_pred CCCCCC---------CCHHHHHH-----------------------------------HHHHHH--hCCCEEEcCccEEE
Q 042564 234 ELPLRG---------FDDEMRAV-----------------------------------VARNLE--GRGINLHPRTTIKE 267 (498)
Q Consensus 234 ~~~l~~---------~~~~~~~~-----------------------------------l~~~l~--~~Gv~i~~~~~v~~ 267 (498)
..++|. |.|+.... +++.+. +..+.++.+++|..
T Consensus 224 ~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~ 303 (436)
T COG3486 224 SGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQS 303 (436)
T ss_pred CCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceee
Confidence 877653 22222221 111221 34788999999999
Q ss_pred EEEeCCe-EEEEEC---C--CeEEEcCEEEEecCCCcCCC-CCCcccCCceeCCCCCeEcCCCCCCC-----CCCeEEec
Q 042564 268 LIKSEEG-VKVITD---H--GEEIVADVVLFATGRAPNTK-RLNLKAVGVEVDQTGAVKVDENSRTN-----VPSIWAVG 335 (498)
Q Consensus 268 i~~~~~~-~~v~~~---~--g~~i~~D~vi~a~G~~p~~~-~l~l~~~gi~~~~~g~i~vd~~~~t~-----~~~iya~G 335 (498)
++..+++ +.+.+. . .++++.|.||+|||++.... ++..-...+.++++|...|+..++.. .-.||+.|
T Consensus 304 ~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn 383 (436)
T COG3486 304 VEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQN 383 (436)
T ss_pred eecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEec
Confidence 9988876 665542 2 24788999999999986555 43211234677888999999876542 13599999
Q ss_pred ccCCC-----CCChHHHHHHHHHHHHHHhCCC
Q 042564 336 DVTNR-----MNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 336 D~~~~-----~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
-+... +.+.-.|.+.+. +++.++|..
T Consensus 384 ~e~htHGig~pdLsl~a~Raa~-I~~~L~g~~ 414 (436)
T COG3486 384 AELHTHGIGAPDLSLGAWRAAV-ILNSLLGRE 414 (436)
T ss_pred ccccccccCCccchHHHHHHHH-HHHHHhCcC
Confidence 77653 555566766665 455566654
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-16 Score=151.47 Aligned_cols=196 Identities=20% Similarity=0.291 Sum_probs=125.7
Q ss_pred CCceEEEEcCeEEEcCCCCCCCCCCC---C---CCcccChHHHhccc----------------cCCCeEEEE---cCCH-
Q 042564 158 DGTKLSYSAKHILIATGSRAQRAPIP---G---QELAITSDEALSLE----------------ELPKRAVVL---GGGY- 211 (498)
Q Consensus 158 ~g~~~~~~~d~liiAtG~~p~~p~i~---g---~~~~~~~~~~~~l~----------------~~~~~v~Vi---G~G~- 211 (498)
+++..++....+|+|||..++.+.-. | ...++|.-++.++. ..||+|+.| |+-.
T Consensus 293 ~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~ 372 (622)
T COG1148 293 EPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDF 372 (622)
T ss_pred CCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCc
Confidence 44556788999999999887765311 1 13355555544422 246888765 5443
Q ss_pred -------H------HHHHHHHHHHC--CCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E
Q 042564 212 -------I------AVEFASIWRGM--GSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V 275 (498)
Q Consensus 212 -------~------g~e~a~~l~~~--g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~ 275 (498)
+ ++.-|+.+++. ..+|++++..-+-+ ....-+.+.+.-++.||.++.+ .+.+|...+++ +
T Consensus 373 ~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRaf---G~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l 448 (622)
T COG1148 373 QVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAF---GKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKL 448 (622)
T ss_pred ccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeecc---CccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCee
Confidence 1 22223333333 45788887754433 3333333434334679999988 66677665554 4
Q ss_pred EEEECC---Ce--EEEcCEEEEecCCCcCCCCCCc-ccCCceeCCCCCeEcC-CCC---CCCCCCeEEecccCCCCCChH
Q 042564 276 KVITDH---GE--EIVADVVLFATGRAPNTKRLNL-KAVGVEVDQTGAVKVD-ENS---RTNVPSIWAVGDVTNRMNLTP 345 (498)
Q Consensus 276 ~v~~~~---g~--~i~~D~vi~a~G~~p~~~~l~l-~~~gi~~~~~g~i~vd-~~~---~t~~~~iya~GD~~~~~~~~~ 345 (498)
.|..+| |+ ++++|+|++++|..|....-.+ +-+|+..+++|++... +.+ +|+.++||.+|-+. +|+-..
T Consensus 449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aq-gPkdI~ 527 (622)
T COG1148 449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQ-GPKDIA 527 (622)
T ss_pred EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeeccc-CCccHH
Confidence 554433 33 6889999999999997664322 4478999999998877 444 57999999999554 477778
Q ss_pred HHHHHHHHHHHHH
Q 042564 346 VALMEGTCFAKTV 358 (498)
Q Consensus 346 ~A~~~g~~aa~~i 358 (498)
.+..||..||...
T Consensus 528 ~siaqa~aAA~kA 540 (622)
T COG1148 528 DSIAQAKAAAAKA 540 (622)
T ss_pred HHHHHhHHHHHHH
Confidence 8888887776543
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-13 Score=135.58 Aligned_cols=254 Identities=17% Similarity=0.241 Sum_probs=139.8
Q ss_pred CccEEEECCChhHHHHHHHHH-hCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSA-NFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~-~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+.|+||||||||++||.+|. +.|++|+|+|+ ...+||... .|..|
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk---------~p~pgGLvR-~GVaP----------------------- 85 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEK---------LPNPYGLIR-YGVAP----------------------- 85 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEec---------CCCCccEEE-EeCCC-----------------------
Confidence 468999999999999999765 58999999995 445556532 12111
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
+ .. ..+.+...+...+...++++..+. .+.. .++.+ .....||.||+|+|+.+..++
T Consensus 86 -d---h~-----------~~k~v~~~f~~~~~~~~v~f~gnv--~VG~---Dvt~e---eL~~~YDAVIlAtGA~~l~ip 142 (506)
T PTZ00188 86 -D---HI-----------HVKNTYKTFDPVFLSPNYRFFGNV--HVGV---DLKME---ELRNHYNCVIFCCGASEVSIP 142 (506)
T ss_pred -C---Cc-----------cHHHHHHHHHHHHhhCCeEEEeee--EecC---ccCHH---HHHhcCCEEEEEcCCCCCCCC
Confidence 0 01 112222333344445567766321 1111 11111 123479999999998865444
Q ss_pred CC----------CCC------cccChHHHh-------------c----cc--cCCCeEEEEcCCHHHHHHHHHH------
Q 042564 182 IP----------GQE------LAITSDEAL-------------S----LE--ELPKRAVVLGGGYIAVEFASIW------ 220 (498)
Q Consensus 182 i~----------g~~------~~~~~~~~~-------------~----l~--~~~~~v~ViG~G~~g~e~a~~l------ 220 (498)
++ |.+ -.++..++. . +. ...++++|||.|+.++++|..|
T Consensus 143 i~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~ 222 (506)
T PTZ00188 143 IGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDD 222 (506)
T ss_pred cccccceeeeccccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHH
Confidence 11 111 112222211 0 10 1236899999999999999975
Q ss_pred --------------HHCCC-cEEEEeeCCCC--------------CCC----CCH-H-----------------------
Q 042564 221 --------------RGMGS-TVDLLFRKELP--------------LRG----FDD-E----------------------- 243 (498)
Q Consensus 221 --------------~~~g~-~V~lv~~~~~~--------------l~~----~~~-~----------------------- 243 (498)
++.+. +|+++.|.... ++. +++ +
T Consensus 223 L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~ 302 (506)
T PTZ00188 223 LSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEI 302 (506)
T ss_pred hhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhH
Confidence 23233 57777776521 111 000 0
Q ss_pred HHHHHHHHHH----------hCCCEEEcCccEEEEEE-eCCeEEEEEC-----------CCe--EEEcCEEEEecCCCcC
Q 042564 244 MRAVVARNLE----------GRGINLHPRTTIKELIK-SEEGVKVITD-----------HGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 244 ~~~~l~~~l~----------~~Gv~i~~~~~v~~i~~-~~~~~~v~~~-----------~g~--~i~~D~vi~a~G~~p~ 299 (498)
..+.+.+..+ .+-+.+++.....+|.. ++....+.+. .|+ .++||+|+-++|++..
T Consensus 303 ~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~ 382 (506)
T PTZ00188 303 FQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKS 382 (506)
T ss_pred HHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCC
Confidence 1122333221 13456677777777764 2222222222 233 6899999999999876
Q ss_pred CCCCCcccCCceeCCCCCeEcCCCCCC--CCCCeEEecccCCCC
Q 042564 300 TKRLNLKAVGVEVDQTGAVKVDENSRT--NVPSIWAVGDVTNRM 341 (498)
Q Consensus 300 ~~~l~l~~~gi~~~~~g~i~vd~~~~t--~~~~iya~GD~~~~~ 341 (498)
.- . |+.+|. . +.+. ..+. ..|++|++|.+-.+|
T Consensus 383 p~----~--g~pFd~-~-~~n~-~grv~~~~~g~Y~~GWiKrGP 417 (506)
T PTZ00188 383 NF----A--ENLYNQ-S-VQMF-KEDIGQHKFAIFKAGWFDKGP 417 (506)
T ss_pred CC----C--CCCccc-c-CCCC-CCcccCCCCCcEEeeecCcCC
Confidence 52 2 345552 2 2222 1221 379999999998653
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.2e-13 Score=124.54 Aligned_cols=276 Identities=20% Similarity=0.288 Sum_probs=153.9
Q ss_pred CccEEEECCChhHHHHHHHHHh--CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
...|+|||+||||+++|..|.+ .+..|.|+|| .| .++|. -+||.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek------~P---vPFGL-------------------------vRyGV 65 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEK------LP---VPFGL-------------------------VRYGV 65 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeec------CC---cccce-------------------------eeecc
Confidence 3589999999999999999988 5689999994 22 22222 12332
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQR 179 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~ 179 (498)
.-+. .........+...++.....++-+. .+. ..+.++ +.+-.||.+|||.|+. ++.
T Consensus 66 APDH--------------pEvKnvintFt~~aE~~rfsf~gNv--~vG---~dvsl~---eL~~~ydavvLaYGa~~dR~ 123 (468)
T KOG1800|consen 66 APDH--------------PEVKNVINTFTKTAEHERFSFFGNV--KVG---RDVSLK---ELTDNYDAVVLAYGADGDRR 123 (468)
T ss_pred CCCC--------------cchhhHHHHHHHHhhccceEEEecc--eec---ccccHH---HHhhcccEEEEEecCCCCcc
Confidence 2111 0111111223333333344444321 000 011111 1245799999999976 678
Q ss_pred CCCCCCC--cccChHHHhcccc------------CCCeEEEEcCCHHHHHHHHHHHHC----------------------
Q 042564 180 APIPGQE--LAITSDEALSLEE------------LPKRAVVLGGGYIAVEFASIWRGM---------------------- 223 (498)
Q Consensus 180 p~i~g~~--~~~~~~~~~~l~~------------~~~~v~ViG~G~~g~e~a~~l~~~---------------------- 223 (498)
..|||.+ .+++.+.+..+.. -.++|+|||.|..++++|..|..-
T Consensus 124 L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~ 203 (468)
T KOG1800|consen 124 LDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSN 203 (468)
T ss_pred cCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCC
Confidence 8999975 3566665544321 146999999999999999987432
Q ss_pred CCcEEEEeeCCCC--------------CCC----C--------------------CHHHHHHHHHHHHhC---------C
Q 042564 224 GSTVDLLFRKELP--------------LRG----F--------------------DDEMRAVVARNLEGR---------G 256 (498)
Q Consensus 224 g~~V~lv~~~~~~--------------l~~----~--------------------~~~~~~~l~~~l~~~---------G 256 (498)
=.+|+++.|.... ++. + -+++.+.+.+.+.++ +
T Consensus 204 VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~ 283 (468)
T KOG1800|consen 204 VKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGG 283 (468)
T ss_pred cceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCc
Confidence 1357888776531 110 0 012333333333330 1
Q ss_pred CE---EEcCccEEEEEEeCCe-----EEEE---------ECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeE
Q 042564 257 IN---LHPRTTIKELIKSEEG-----VKVI---------TDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319 (498)
Q Consensus 257 v~---i~~~~~v~~i~~~~~~-----~~v~---------~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~ 319 (498)
.+ +.+-....+|..+.++ +.++ +.+-++++|++++.++|+....-. .|+.+|.+.++.
T Consensus 284 ~k~w~~~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~-----~gipFd~~kgvv 358 (468)
T KOG1800|consen 284 SKQWHLRFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVD-----SGIPFDDKKGVV 358 (468)
T ss_pred cchhHHHHhcCHHHhccCcccccceEEEeeeehhhcccccCceEeeccceeEeeeeecccccC-----CCCCcccccCcc
Confidence 11 1111112222222111 1111 112247899999999998765532 255555544455
Q ss_pred cCCCCCC----CCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 320 VDENSRT----NVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 320 vd~~~~t----~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
-|...+. -.|++|++|-+..+ .+....+++++..+|..|.
T Consensus 359 ~n~~GrV~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~ 403 (468)
T KOG1800|consen 359 PNVNGRVLVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIV 403 (468)
T ss_pred cCCCceEEeeccCCceEEEeeeccCCcceeeehhhhHHHHHHHHH
Confidence 5554443 35999999999985 3455566777777777665
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-13 Score=102.67 Aligned_cols=80 Identities=36% Similarity=0.683 Sum_probs=75.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG 282 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g 282 (498)
+++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+++.||++++++.+.++..+++++.|+++||
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999888766888776
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=122.55 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=62.0
Q ss_pred HHHHCCCcEEEEeeCCCCCCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC-
Q 042564 219 IWRGMGSTVDLLFRKELPLRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG- 295 (498)
Q Consensus 219 ~l~~~g~~V~lv~~~~~~l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G- 295 (498)
.+.++|.+... ....+++|. -...+.+.+.+.+++.||+++++++|.+|..++....+.+++|+++.||.+|+|+|
T Consensus 87 ~~e~~Gi~~~e-~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG 165 (408)
T COG2081 87 WVEGLGIALKE-EDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGG 165 (408)
T ss_pred HHHhcCCeeEE-ccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCC
Confidence 33444544322 223344443 34578899999999999999999999999998878999999998999999999999
Q ss_pred -CCcCC
Q 042564 296 -RAPNT 300 (498)
Q Consensus 296 -~~p~~ 300 (498)
..|.+
T Consensus 166 ~S~P~l 171 (408)
T COG2081 166 KSWPKL 171 (408)
T ss_pred cCCCCC
Confidence 55543
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.2e-12 Score=123.15 Aligned_cols=321 Identities=17% Similarity=0.224 Sum_probs=168.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc----------------C---chhhHHHHHH
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR----------------G---CVPKKILVYG 85 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~----------------g---~~p~~~l~~~ 85 (498)
||+|||+|.|||++|+.|.+. .+|+|+.|..... .+..+.-||...-. | |.+..+....
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~-~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv 86 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE-SSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIV 86 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC-ccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 899999999999999999887 9999999654443 22234456654221 1 6666666666
Q ss_pred hHhhHHHhhhhcCCcccccccc--cCHH--------HHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeE-EE--EEeCC-
Q 042564 86 ASFGGELEDARSYGWEVHEKID--FDWK--------KLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGE-GK--IVGPN- 150 (498)
Q Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~-~~--~i~~~- 150 (498)
.+-...+..+..+|.++++... +.+. .++......-..+...+....++ .+|+++.+. +. .++++
T Consensus 87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~ 166 (518)
T COG0029 87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI 166 (518)
T ss_pred HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence 6667777888888988876432 1111 00000011112333333343443 689999985 33 23444
Q ss_pred E---EEEEeCCCceEEEEcCeEEEcCCCCCCCCCC-------CCC--Ccc----cChHHHhccccCCCeEEEEcCCHHHH
Q 042564 151 E---VEVTQLDGTKLSYSAKHILIATGSRAQRAPI-------PGQ--ELA----ITSDEALSLEELPKRAVVLGGGYIAV 214 (498)
Q Consensus 151 ~---~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i-------~g~--~~~----~~~~~~~~l~~~~~~v~ViG~G~~g~ 214 (498)
. +.+...+++...++++.+|||||.--.+... .|. ... ....|+. +-+..-+++-.+ +--..
T Consensus 167 ~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlE-FvQFHPT~l~~~-~~~~~ 244 (518)
T COG0029 167 GVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLE-FVQFHPTALYIP-QRRAF 244 (518)
T ss_pred eEeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCcc-ceeeccceecCC-CCccc
Confidence 2 2332232235688999999999965433211 111 000 0001110 001111222222 11112
Q ss_pred HHHHHHHHCCCcEEEEeeCCCCCCCC-------CHH-HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEE
Q 042564 215 EFASIWRGMGSTVDLLFRKELPLRGF-------DDE-MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIV 286 (498)
Q Consensus 215 e~a~~l~~~g~~V~lv~~~~~~l~~~-------~~~-~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~ 286 (498)
-+.+.++.-|.. -+-..++++++.+ +.+ ++..+...+++.|-.++++..- +... . + .+.++
T Consensus 245 LiSEAVRGEGA~-L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~V~LD~s~--~~~~--~--~----~~rFP 313 (518)
T COG0029 245 LISEAVRGEGAI-LVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGADVFLDISH--IPGD--F--F----ERRFP 313 (518)
T ss_pred eeehhhhcCccE-EECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCeEEEeccC--CCch--h--h----hhhCc
Confidence 223444444432 2234556666533 233 4455666777766666665221 1100 0 0 01121
Q ss_pred -cCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC-----CCChHHH----HHHHHHHHH
Q 042564 287 -ADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR-----MNLTPVA----LMEGTCFAK 356 (498)
Q Consensus 287 -~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~-----~~~~~~A----~~~g~~aa~ 356 (498)
........|..|..+.++.... ..+ ..|+|.||.+.||++|++||+|.|+.. ..++... .--|..+|+
T Consensus 314 ~I~~~c~~~GiD~~r~~IPV~Pa-aHY-~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~ 391 (518)
T COG0029 314 TIYAACLKAGIDPTREPIPVVPA-AHY-TMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAE 391 (518)
T ss_pred HHHHHHHHcCCCcccCccCccch-hhe-ecccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHH
Confidence 0112223455555544322111 011 147899999999999999999999863 4455544 445666777
Q ss_pred HHhCCC
Q 042564 357 TVFGGQ 362 (498)
Q Consensus 357 ~i~~~~ 362 (498)
+|.+..
T Consensus 392 ~i~~~~ 397 (518)
T COG0029 392 DIAGRL 397 (518)
T ss_pred Hhhccc
Confidence 787653
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=133.42 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=77.5
Q ss_pred cccCCCeEEEEcCCHHHHHHHHH-------HHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 197 LEELPKRAVVLGGGYIAVEFASI-------WRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 197 l~~~~~~v~ViG~G~~g~e~a~~-------l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
+...|+.++++|++.++++++.. +.+++.+|++.......+..+...+...+.+.+++.|+++++++.+.++.
T Consensus 156 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~ 235 (557)
T PRK07843 156 YGKVPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY 235 (557)
T ss_pred cccccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE
Confidence 44567889999999999998865 56667777776554444444677888889999999999999999999998
Q ss_pred EeCCe-EEEEEC-CCe--EEEcC-EEEEecC-CCcCCCC
Q 042564 270 KSEEG-VKVITD-HGE--EIVAD-VVLFATG-RAPNTKR 302 (498)
Q Consensus 270 ~~~~~-~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~ 302 (498)
.+++. ..|... +++ .+.++ .||+|+| +.+|.++
T Consensus 236 ~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m 274 (557)
T PRK07843 236 VEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQM 274 (557)
T ss_pred EeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHH
Confidence 76554 233332 443 47785 5888775 6666654
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-10 Score=111.06 Aligned_cols=150 Identities=19% Similarity=0.189 Sum_probs=96.7
Q ss_pred EEcCCHHHHHHHHHH-HHCCCcEEEEeeCCCCCCC-CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEE-EEECCC
Q 042564 206 VLGGGYIAVEFASIW-RGMGSTVDLLFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-VITDHG 282 (498)
Q Consensus 206 ViG~G~~g~e~a~~l-~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-v~~~~g 282 (498)
|+|-+... ++...| ...|+.|.-+-- +-|. ....+.+.+.+.+++.|++++.+.+|.++..+++.+. +.+.++
T Consensus 229 vlG~~~~~-~~~~~L~~~~g~~v~E~pt---lPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g 304 (419)
T TIGR03378 229 CFGLGDGL-ELLRELEQATGLTLCELPT---MPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNH 304 (419)
T ss_pred eeCCCChH-HHHHHHHHHHCCCEEeCCC---CCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCC
Confidence 44554422 222333 345777665532 2233 5678889999999999999999999999987777644 444555
Q ss_pred --eEEEcCEEEEecCCC-cCCCCCC---ccc--CCcee---------------C----CCCCeEcCCCCCC-----CCCC
Q 042564 283 --EEIVADVVLFATGRA-PNTKRLN---LKA--VGVEV---------------D----QTGAVKVDENSRT-----NVPS 330 (498)
Q Consensus 283 --~~i~~D~vi~a~G~~-p~~~~l~---l~~--~gi~~---------------~----~~g~i~vd~~~~t-----~~~~ 330 (498)
..+.+|.+|+|+|.. +.--.-. +.+ .++++ + -.-+|.+|+.+|. ..+|
T Consensus 305 ~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~N 384 (419)
T TIGR03378 305 RDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIEN 384 (419)
T ss_pred ccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCccccc
Confidence 479999999999987 3211000 000 01111 0 0124889998883 3899
Q ss_pred eEEecccCCCCCCh------HHHHHHHHHHHHHHh
Q 042564 331 IWAVGDVTNRMNLT------PVALMEGTCFAKTVF 359 (498)
Q Consensus 331 iya~GD~~~~~~~~------~~A~~~g~~aa~~i~ 359 (498)
+||+|-+.++.... -+|+..|-.||++|.
T Consensus 385 l~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 385 LYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred ceEechhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence 99999999863322 378888888888763
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-12 Score=131.27 Aligned_cols=247 Identities=22% Similarity=0.294 Sum_probs=138.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---chhhHHHHHHhHhhHHHhhhh
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---CVPKKILVYGASFGGELEDAR 96 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---~~p~~~l~~~~~~~~~~~~~~ 96 (498)
.+.++||+|||+|++|+++|+.+++.|.+|+|||| ....||+|...+ |+|.+.+...+..........
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek---------~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~ 79 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEK---------DPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPR 79 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEec---------CCCCCccccccCceeecCccHHhhhccccchHHHHH
Confidence 34578999999999999999999999999999995 345788887765 788776655443322222111
Q ss_pred cCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC
Q 042564 97 SYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 97 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~ 175 (498)
.+-.... ....+. +++. ..++.....++ .+.. .++++.... . .. .+.....-.++|.
T Consensus 80 ~~~~~~~-~~~~~~-~l~~---~~~~~s~~~~~-wl~~~~gv~~~~~~------~-----~~-----d~~~~~~~~~~gg 137 (581)
T PRK06134 80 TYLRHEL-GARYDA-ARID---AFLEAGPHMVA-FFERHTALRFADGN------A-----IP-----DYHGDTPGAATGG 137 (581)
T ss_pred HHHHHHh-CcCCCH-HHHH---HHHhccHHHHH-HHHhcCCceeeecC------C-----CC-----CCCCCCCCCCCCC
Confidence 1100000 001111 1111 11111112222 2222 345542210 0 00 0111122234555
Q ss_pred CCCCC-CCCCCCcccChHHHhccccCCCeEEEEcCCHHH-HHHHHHHHHCCCcEEEEeeCCCCCC--------------C
Q 042564 176 RAQRA-PIPGQELAITSDEALSLEELPKRAVVLGGGYIA-VEFASIWRGMGSTVDLLFRKELPLR--------------G 239 (498)
Q Consensus 176 ~p~~p-~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g-~e~a~~l~~~g~~V~lv~~~~~~l~--------------~ 239 (498)
++..| ++++.+.. +++..+...+.++.++|++.++ .+++..+...+..+.+..+..++++ .
T Consensus 138 r~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (581)
T PRK06134 138 RSLIAAPFDGRELG---ALLERLRKPLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLV 214 (581)
T ss_pred CeeccCCCChhhhh---HHHHHhccccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCccc
Confidence 55444 34443222 3444555566677888888765 6777777666555443322111111 1
Q ss_pred CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEE--CCCe-EEEc-CEEEEecCCCcCC
Q 042564 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVIT--DHGE-EIVA-DVVLFATGRAPNT 300 (498)
Q Consensus 240 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~--~~g~-~i~~-D~vi~a~G~~p~~ 300 (498)
....+.+.+.+.+++.|+++++++.++++..+++. ..|.. .++. .+.+ +.||+|+|-..+.
T Consensus 215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 215 NGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccC
Confidence 23557788888899999999999999998766544 23333 3443 5788 9999999876653
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=130.64 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=82.6
Q ss_pred hHHHhccccCCCeEEEEcCCH--HHHHHHHHHHHCCCcEEEEeeCCCCCCCC--------------CHHHHHHHHHHHHh
Q 042564 191 SDEALSLEELPKRAVVLGGGY--IAVEFASIWRGMGSTVDLLFRKELPLRGF--------------DDEMRAVVARNLEG 254 (498)
Q Consensus 191 ~~~~~~l~~~~~~v~ViG~G~--~g~e~a~~l~~~g~~V~lv~~~~~~l~~~--------------~~~~~~~l~~~l~~ 254 (498)
.+++.++...++++.|+|+++ ++.+++..+...+.+++++.+...+++.+ ...+...+.+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~ 226 (574)
T PRK12842 147 GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD 226 (574)
T ss_pred hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh
Confidence 456667777889999999998 89999999999998887765544443322 24577778888889
Q ss_pred CCCEEEcCccEEEEEEeCCe-EEEEE--CCCe-EEEcC-EEEEecCCCcCCC
Q 042564 255 RGINLHPRTTIKELIKSEEG-VKVIT--DHGE-EIVAD-VVLFATGRAPNTK 301 (498)
Q Consensus 255 ~Gv~i~~~~~v~~i~~~~~~-~~v~~--~~g~-~i~~D-~vi~a~G~~p~~~ 301 (498)
.|+++++++.|+++..+++. ..|.. .+++ .+.++ .||+|+|..++..
T Consensus 227 ~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~ 278 (574)
T PRK12842 227 LGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSHDL 278 (574)
T ss_pred CCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchH
Confidence 99999999999999876654 23433 3343 46776 7999999877543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=133.55 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=44.0
Q ss_pred cCCCcCCCCCCcccCCcee---CCCCCeEcCCCCCCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 294 TGRAPNTKRLNLKAVGVEV---DQTGAVKVDENSRTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 294 ~G~~p~~~~l~l~~~gi~~---~~~g~i~vd~~~~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
.|..|..+.+......+.. ...|+|.||.+++|++|++||+|||++. ......|.-.|++|+.++.
T Consensus 337 ~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~ 406 (897)
T PRK13800 337 RGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAA 406 (897)
T ss_pred cCCCcccccceecccccccccCCCcceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHH
Confidence 3677776654321110100 1247899999999999999999999864 3333457777888887764
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=128.13 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=31.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.++||+|||+|.||++||+.+++.|.+|+|+||
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK 47 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTK 47 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEc
Confidence 4568999999999999999999999999999996
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-10 Score=110.49 Aligned_cols=199 Identities=20% Similarity=0.218 Sum_probs=104.5
Q ss_pred CccEEEECCChhHHHHHHHHHh---CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHH-------HH-hHhhHH
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN---FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV-------YG-ASFGGE 91 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~-------~~-~~~~~~ 91 (498)
+++|+|||||++|+.+|.+|.+ ....|.|+|+ ....|+...+..--|...+- .. ...+..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~---------~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~ 71 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEP---------RPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQD 71 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEecc---------ccccCCCccCCCCCchhhhccccccccccCCCCchH
Confidence 3689999999999999999988 2224999995 44445444443333322221 11 110111
Q ss_pred H-hhhhcCCcccc--cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCC---cEEEEeEEEEE--e--CCEEEEEeCCCce
Q 042564 92 L-EDARSYGWEVH--EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAG---VKLYEGEGKIV--G--PNEVEVTQLDGTK 161 (498)
Q Consensus 92 ~-~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---v~~~~~~~~~i--~--~~~~~v~~~~g~~ 161 (498)
. +-+...+.... .....| ...+..+.-+-+.+.+.+..++.+.. +.++..++..+ + .....+...+|.
T Consensus 72 F~~WL~~~~~~~~d~~~~~~d-~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~- 149 (474)
T COG4529 72 FVRWLQKQLQRYRDPEDINHD-GQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGP- 149 (474)
T ss_pred HHHHHHhcccccCChhhcCCc-cccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCC-
Confidence 1 11111100000 000001 01111011111122222333444333 67777665543 2 234566667776
Q ss_pred EEEEcCeEEEcCCCCCCCCCC-----CCCC-c---ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCC--cEEEE
Q 042564 162 LSYSAKHILIATGSRAQRAPI-----PGQE-L---AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGS--TVDLL 230 (498)
Q Consensus 162 ~~~~~d~liiAtG~~p~~p~i-----~g~~-~---~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv 230 (498)
...+|-+|+|||..+-.++. ++.. + .+.+.....++. ..+|+|+|+|.+.++....|++.|. +||.+
T Consensus 150 -~~~ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~-~drVli~GsgLt~~D~v~~l~~~gh~g~It~i 227 (474)
T COG4529 150 -SEIADIIVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDA-DDRVLIVGSGLTSIDQVLVLRRRGHKGPITAI 227 (474)
T ss_pred -eeeeeEEEEeccCCCCCcchhhhccCCCcceeccccCCcccccccC-CCceEEecCCchhHHHHHHHhccCCccceEEE
Confidence 77899999999966444332 2221 1 122222222222 3459999999999999999998765 68999
Q ss_pred eeCC
Q 042564 231 FRKE 234 (498)
Q Consensus 231 ~~~~ 234 (498)
.|..
T Consensus 228 SRrG 231 (474)
T COG4529 228 SRRG 231 (474)
T ss_pred eccc
Confidence 8876
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=130.12 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=81.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCcccccc--cc-----------------C-chhh
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCV--IR-----------------G-CVPK 79 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~--~~-----------------g-~~p~ 79 (498)
.++||||||||.||++||+.+++. |.+|+|+||.............||.+. .. + |.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 458999999999999999999986 789999995322100000001111111 00 1 1222
Q ss_pred HHHHHHhHhhHHHhhhhcCCcccccc--cccCHHHHHHHH-----HHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--e-
Q 042564 80 KILVYGASFGGELEDARSYGWEVHEK--IDFDWKKLLQKK-----TDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--G- 148 (498)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~- 148 (498)
.+.....+..+.+..+..+|..+... ..+.+....... ...-..+...+...+++.+++++.++ +..+ +
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~ 167 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDA 167 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC
Confidence 22222333344455556677665421 111111100000 00011233444455566799999886 4433 3
Q ss_pred CCEEE---E-EeCCCceEEEEcCeEEEcCCCCCC
Q 042564 149 PNEVE---V-TQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 149 ~~~~~---v-~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
.+.+. + ...+|....+.++.||+|||....
T Consensus 168 ~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 168 DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred CCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 33322 2 233555557899999999997643
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-11 Score=124.16 Aligned_cols=46 Identities=30% Similarity=0.491 Sum_probs=36.1
Q ss_pred CCCeEcCCCCCCCCCCeEEecccCC-C-C---CC----hHHHHHHHHHHHHHHhC
Q 042564 315 TGAVKVDENSRTNVPSIWAVGDVTN-R-M---NL----TPVALMEGTCFAKTVFG 360 (498)
Q Consensus 315 ~g~i~vd~~~~t~~~~iya~GD~~~-~-~---~~----~~~A~~~g~~aa~~i~~ 360 (498)
.|+|.||.+.||++|++||+|+|+. + . .+ ...|.-.|++|++++..
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999973 2 1 11 24567788899988864
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=126.82 Aligned_cols=150 Identities=17% Similarity=0.120 Sum_probs=78.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc-------------------CchhhHHHHH
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR-------------------GCVPKKILVY 84 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~-------------------g~~p~~~l~~ 84 (498)
+||+|||||+||++||+.|++.|.+|+|+||.... ......-||.+... -|-|.-+...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~--~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 79 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK--SNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNV 79 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC--CCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 69999999999999999999999999999963210 00001112222110 0112212112
Q ss_pred HhHhhHHHhhhhcCCcccccccc---cCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEE--eCCEEE-EEeCC
Q 042564 85 GASFGGELEDARSYGWEVHEKID---FDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV--GPNEVE-VTQLD 158 (498)
Q Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i--~~~~~~-v~~~~ 158 (498)
..+....+..+..+|..+..... ..+..........-..+...+...+++.+++++.+.+..+ +.+.+. +.. +
T Consensus 80 ~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~ 158 (466)
T PRK08401 80 ISKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-C
Confidence 22223333444455655432100 0010000000011123344455556667999887765544 333432 333 4
Q ss_pred CceEEEEcCeEEEcCCCCCC
Q 042564 159 GTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 159 g~~~~~~~d~liiAtG~~p~ 178 (498)
+. .+.++.||+|||+...
T Consensus 159 g~--~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 159 GE--LLKFDATVIATGGFSG 176 (466)
T ss_pred CE--EEEeCeEEECCCcCcC
Confidence 43 6899999999997654
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=126.00 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=36.8
Q ss_pred CCCeEcCCCCCCCCCCeEEecccCCCC--------CChHHHHHHHHHHHHHHhC
Q 042564 315 TGAVKVDENSRTNVPSIWAVGDVTNRM--------NLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 315 ~g~i~vd~~~~t~~~~iya~GD~~~~~--------~~~~~A~~~g~~aa~~i~~ 360 (498)
.|+|.||.+.||.+|++||+|+++++. .....|+-.|++|++++..
T Consensus 348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~ 401 (543)
T PRK06263 348 MGGIRINEDCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAK 401 (543)
T ss_pred cCCEEECCCCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHH
Confidence 478999999999999999999997531 1123677889999999864
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-11 Score=126.39 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=36.9
Q ss_pred CeEcC-------------CCCCCCCCCeEEecccCC--CCCChHHHHHHHHHHHHHHh
Q 042564 317 AVKVD-------------ENSRTNVPSIWAVGDVTN--RMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 317 ~i~vd-------------~~~~t~~~~iya~GD~~~--~~~~~~~A~~~g~~aa~~i~ 359 (498)
+|.|| ++++|++|++||+|||++ ...+...+..+|++++.++.
T Consensus 371 Gi~vd~~~~~~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~ 428 (608)
T PRK06854 371 GYWVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAV 428 (608)
T ss_pred EEEecCcccccccccccccccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHH
Confidence 48899 899999999999999975 35677788889999998875
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=122.59 Aligned_cols=156 Identities=18% Similarity=0.281 Sum_probs=80.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCcccccccc-------------------CchhhH
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIR-------------------GCVPKK 80 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~-------------------g~~p~~ 80 (498)
.++||+|||||.||++||+.+++. |.+|+|+||.... .......-||.|... -|.|..
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~-~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM-RSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC-CCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 358999999999999999999986 5799999963211 111111123333111 122333
Q ss_pred HHHHHhHhhHHHhhhhcCCcccccccc--cCHHH--------HHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeE-EEE-E
Q 042564 81 ILVYGASFGGELEDARSYGWEVHEKID--FDWKK--------LLQKKTDEILRLNGIYKRLLSN-AGVKLYEGE-GKI-V 147 (498)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~-~~~-i 147 (498)
+.....+....+..+..+|+++..... +.... ........-..+...+...+.+ .+++++.++ +.. +
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 161 (582)
T PRK09231 82 VEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence 333333444445555667776642111 00000 0000000001122222222333 478888775 332 2
Q ss_pred -eCCEEE----EEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 148 -GPNEVE----VTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 148 -~~~~~~----v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
+++.+. +...+|....+.++.||+|||....
T Consensus 162 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 162 VDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred EeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 344433 2335665668999999999996543
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-10 Score=118.26 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=36.6
Q ss_pred CCCeEcCCCCCCCCCCeEEecccCC-C-C-------CChHHHHHHHHHHHHHHhC
Q 042564 315 TGAVKVDENSRTNVPSIWAVGDVTN-R-M-------NLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 315 ~g~i~vd~~~~t~~~~iya~GD~~~-~-~-------~~~~~A~~~g~~aa~~i~~ 360 (498)
.|+|.||.+.+|++|++||+|+|+. + . .....|.-.|++|++++..
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999973 2 1 1234577789999998864
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-10 Score=119.47 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=29.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||||||+|.||++||+++++ |.+|+||||
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK 33 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITK 33 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEec
Confidence 5799999999999999999976 899999996
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=121.70 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=82.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccC-------------------chhhH
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRG-------------------CVPKK 80 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g-------------------~~p~~ 80 (498)
.++||+|||||.||++||+.+++. |.+|+|+||....-. .....-||.|...+ |.|..
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~-~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~l 80 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS-HTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDV 80 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC-CchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHH
Confidence 358999999999999999999986 689999996322111 11112244442211 23333
Q ss_pred HHHHHhHhhHHHhhhhcCCcccccccc--cCHHH--------HHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeE-EEE-E
Q 042564 81 ILVYGASFGGELEDARSYGWEVHEKID--FDWKK--------LLQKKTDEILRLNGIYKRLLSN-AGVKLYEGE-GKI-V 147 (498)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~-~~~-i 147 (498)
+.....+....+..+..+|+++..... +.... ........-..+...+...+.+ .+|.++.++ +.. +
T Consensus 81 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 160 (580)
T TIGR01176 81 VEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLL 160 (580)
T ss_pred HHHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEE
Confidence 333333444455556667766542111 00000 0000000011222223333333 478888765 332 2
Q ss_pred -eCCEEE----EEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 148 -GPNEVE----VTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 148 -~~~~~~----v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
+.+.+. +...+|....+.++.||+|||....
T Consensus 161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 161 VDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred eeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 344432 2334666668999999999996543
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.9e-11 Score=123.65 Aligned_cols=35 Identities=37% Similarity=0.561 Sum_probs=31.5
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+.++||||||+|.||++||+.+++.| +|+|+||
T Consensus 25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK 59 (594)
T PLN02815 25 ESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITK 59 (594)
T ss_pred CcccccCEEEECccHHHHHHHHHHhhCC-CEEEEEC
Confidence 3345689999999999999999999999 9999996
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=122.86 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=31.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||+|||||.||++||+.|++.|.+|+|+||
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK 66 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCY 66 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence 368999999999999999999999999999995
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=123.21 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=30.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhC--CCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF--GAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek 54 (498)
.++||||||||.||++||++|++. |.+|+|+||
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK 36 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAK 36 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEec
Confidence 358999999999999999999986 589999996
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-11 Score=119.64 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=29.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..++||||||+|.||++||+.++ .|.+|+||||
T Consensus 2 ~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK 34 (433)
T PRK06175 2 NLYADVLIVGSGVAGLYSALNLR-KDLKILMVSK 34 (433)
T ss_pred CccccEEEECchHHHHHHHHHhc-cCCCEEEEec
Confidence 35689999999999999999985 6999999996
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-11 Score=125.06 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=30.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCC---CcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFG---AKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g---~~V~lvek 54 (498)
.++||+|||||.||++||+.+++.| .+|+|+||
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK 39 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSK 39 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEc
Confidence 4589999999999999999999998 89999996
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-10 Score=119.21 Aligned_cols=155 Identities=16% Similarity=0.160 Sum_probs=84.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc---------------------CchhhH
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR---------------------GCVPKK 80 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~---------------------g~~p~~ 80 (498)
.++||||||||.||++||+++++.|.+|+||||.... ........||.+... -|.|.-
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~-~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~l 127 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT-RSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 127 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC-CCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 4689999999999999999999999999999963211 111111123322111 123333
Q ss_pred HHHHHhHhhHHHhhhhcCCcccccccc--cCHHHHHH------------H----HHHHHHHHhHHHHHHHHhCCcEEEEe
Q 042564 81 ILVYGASFGGELEDARSYGWEVHEKID--FDWKKLLQ------------K----KTDEILRLNGIYKRLLSNAGVKLYEG 142 (498)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~------------~----~~~~~~~~~~~~~~~~~~~gv~~~~~ 142 (498)
+.....+....+..+..+|+++..... +.....-. + .+..-..+...+.....+.+|+++.+
T Consensus 128 v~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 207 (635)
T PLN00128 128 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVE 207 (635)
T ss_pred HHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 333444445555666677776643111 00000000 0 00001122233334444568999887
Q ss_pred E-EEE-E-e-CCEEE---E-EeCCCceEEEEcCeEEEcCCCCC
Q 042564 143 E-GKI-V-G-PNEVE---V-TQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 143 ~-~~~-i-~-~~~~~---v-~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+ +.. + + .+.+. + ...+|+...+.++.||+|||.-.
T Consensus 208 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 208 YFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred eEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 6 333 3 3 33322 2 22356667889999999999653
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-10 Score=118.33 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=82.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---------------------chhh
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---------------------CVPK 79 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---------------------~~p~ 79 (498)
..++||+|||||.||++||++|++. .+|+|+||.... ........||.+...+ |-|.
T Consensus 3 ~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~-~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~ 80 (583)
T PRK08205 3 QHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPT-RSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQD 80 (583)
T ss_pred ceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCC-CCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHH
Confidence 3468999999999999999999986 999999963211 1111112334332211 1111
Q ss_pred HHHHHHhHhhHHHhhhhcCCcccccccccCH-----------------HHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEe
Q 042564 80 KILVYGASFGGELEDARSYGWEVHEKIDFDW-----------------KKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG 142 (498)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 142 (498)
.+.....+....+..+..+|+++.....-.+ ..........-..+...+...+.+.+|+++.+
T Consensus 81 ~v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~ 160 (583)
T PRK08205 81 AAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVEFFNE 160 (583)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCEEEeC
Confidence 1122222334445556667776642111000 00000000001223344455556679999988
Q ss_pred E-EEE-E-eC----CEE---EE-EeCCCceEEEEcCeEEEcCCCCC
Q 042564 143 E-GKI-V-GP----NEV---EV-TQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 143 ~-~~~-i-~~----~~~---~v-~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+ +.. + +. +.+ .+ ...+++...+.++.||+|||...
T Consensus 161 ~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 161 FYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred CEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 6 333 2 33 332 22 22455555789999999999765
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-10 Score=113.24 Aligned_cols=136 Identities=24% Similarity=0.320 Sum_probs=73.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhh-------
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDAR------- 96 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~------- 96 (498)
|||+|||||+||+.+|..+++.|.+|+|+|+ ....+|.| +|.|+..-.....+.+.+..+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~---------~~~~~g~~---~c~ps~gG~a~g~l~rEidaLGG~~~~~~ 68 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTL---------NLDTIGKC---SCNPAIGGPAKGILVKEIDALGGLMGKAA 68 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEec---------ccccccCC---CccccccccccchhhhhhhcccchHHHHH
Confidence 7999999999999999999999999999994 11222222 2333221111111111111100
Q ss_pred ---cCCcccc---cccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEE--e-C-CEEEEEeCCCceEEEE
Q 042564 97 ---SYGWEVH---EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIV--G-P-NEVEVTQLDGTKLSYS 165 (498)
Q Consensus 97 ---~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i--~-~-~~~~v~~~~g~~~~~~ 165 (498)
...+... ..+.+ |. .+..-.-..+...+...+.+. +++++.+.+..+ + . ..+.|.+.+|. .+.
T Consensus 69 d~~~i~~r~ln~skgpAV-~~---~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~--~I~ 142 (617)
T TIGR00136 69 DKAGLQFRVLNSSKGPAV-RA---TRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGL--KFR 142 (617)
T ss_pred HhhceeheecccCCCCcc-cc---cHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCC--EEE
Confidence 0000000 00110 00 010111123344455555555 889988886654 2 2 23456666765 899
Q ss_pred cCeEEEcCCCCC
Q 042564 166 AKHILIATGSRA 177 (498)
Q Consensus 166 ~d~liiAtG~~p 177 (498)
++.||+|||...
T Consensus 143 Ad~VILATGtfL 154 (617)
T TIGR00136 143 AKAVIITTGTFL 154 (617)
T ss_pred CCEEEEccCccc
Confidence 999999999754
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=121.98 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||||||||.||++||+.+++.|.+|+|+||
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK 36 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISK 36 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEc
Confidence 358999999999999999999999999999996
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=115.18 Aligned_cols=85 Identities=22% Similarity=0.356 Sum_probs=57.9
Q ss_pred HHHHHHHHCCCcEEEEeeCCCCCCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEE
Q 042564 215 EFASIWRGMGSTVDLLFRKELPLRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVL 291 (498)
Q Consensus 215 e~a~~l~~~g~~V~lv~~~~~~l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi 291 (498)
++...+.++|.... .+...+++|. -..++.+.+.+.+++.||+++++++|.+|..++++ ..|.+++++.+.+|.||
T Consensus 81 d~~~ff~~~Gv~~~-~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vI 159 (409)
T PF03486_consen 81 DLIAFFEELGVPTK-IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVI 159 (409)
T ss_dssp HHHHHHHHTT--EE-E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEE
T ss_pred HHHHHHHhcCCeEE-EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEE
Confidence 56677888887654 3444555554 34678889999999999999999999999988877 78888777899999999
Q ss_pred EecCCCcCC
Q 042564 292 FATGRAPNT 300 (498)
Q Consensus 292 ~a~G~~p~~ 300 (498)
+|+|-.+..
T Consensus 160 LAtGG~S~p 168 (409)
T PF03486_consen 160 LATGGKSYP 168 (409)
T ss_dssp E----SSSG
T ss_pred EecCCCCcc
Confidence 999965543
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-09 Score=112.11 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||||||||.||++||+.+++.|.+|+||||
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK 43 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITK 43 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEc
Confidence 468999999999999999999999999999996
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-10 Score=117.98 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=29.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.++||||||+|.||++||+++++ |.+|+||||
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK 39 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITK 39 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEc
Confidence 456899999999999999999964 999999996
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.3e-10 Score=117.20 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
||||||||.||++||+.|++.|.+|+|+||
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK 30 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISK 30 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence 899999999999999999999999999996
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=115.44 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHH----hCCCcEEEEccCC
Q 042564 25 DLFVIGAGSGGVRAARFSA----NFGAKVGICELPF 56 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~----~~g~~V~lvek~~ 56 (498)
||||||||.||++||+.++ +.|.+|+|+||..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 8999999999999999998 6799999999643
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-09 Score=99.60 Aligned_cols=144 Identities=16% Similarity=0.181 Sum_probs=89.4
Q ss_pred HHHHHHHHH-CCCcEEEEeeCCCCCCC-CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEECCCeE--EEcC
Q 042564 214 VEFASIWRG-MGSTVDLLFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVITDHGEE--IVAD 288 (498)
Q Consensus 214 ~e~a~~l~~-~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~--i~~D 288 (498)
.++-..|++ .+..+..+-.. -|. +.-.+.+.+...+++.|.-+..+.+|.+.+-.++++ .|.+.+... +.+|
T Consensus 231 ~~~~~aL~~~~~~~l~elPtl---PPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~ 307 (421)
T COG3075 231 DELWDALNDVLGLALFELPTL---PPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRAD 307 (421)
T ss_pred HHHHHHHHHHhCCceeecCCC---CcchhhhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChh
Confidence 344444544 25555444221 222 456678889999999999999999999988777764 455555543 5699
Q ss_pred EEEEecCCCcCCCCCC--------cccCCceeCC-----------------CCCeEcCCCCCC-----CCCCeEEecccC
Q 042564 289 VVLFATGRAPNTKRLN--------LKAVGVEVDQ-----------------TGAVKVDENSRT-----NVPSIWAVGDVT 338 (498)
Q Consensus 289 ~vi~a~G~~p~~~~l~--------l~~~gi~~~~-----------------~g~i~vd~~~~t-----~~~~iya~GD~~ 338 (498)
..++|+|.--...+.. +-.+.+.-++ .-++.+|+.+|- .+.|+||||.+.
T Consensus 308 ~~VLAsGsffskGLvae~d~I~EPIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavl 387 (421)
T COG3075 308 FYVLASGSFFSKGLVAERDKIYEPIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVL 387 (421)
T ss_pred HeeeeccccccccchhhhhhhhcchhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHh
Confidence 9999999532221100 0000110000 013788888875 468999999999
Q ss_pred CCCCCh------HHHHHHHHHHHHHHhC
Q 042564 339 NRMNLT------PVALMEGTCFAKTVFG 360 (498)
Q Consensus 339 ~~~~~~------~~A~~~g~~aa~~i~~ 360 (498)
++.... -+|+-.|..+|+.|+.
T Consensus 388 gGfdpi~egcGsGVaivta~~aa~qi~~ 415 (421)
T COG3075 388 GGFDPIAEGCGSGVAIVTALHAAEQIAE 415 (421)
T ss_pred cCCcHHHhcCCcchHHHHHHHHHHHHHH
Confidence 874322 2577777778887764
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.1e-10 Score=117.43 Aligned_cols=34 Identities=35% Similarity=0.552 Sum_probs=31.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 55 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~ 55 (498)
.++||||||||.||++||+.|++.|.+|+||||.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 3589999999999999999999999999999963
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=114.53 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=30.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+||||||+|.||++||+++++.|.+|+||||
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK 34 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSL 34 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEc
Confidence 46999999999999999999999999999995
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-09 Score=107.98 Aligned_cols=185 Identities=15% Similarity=0.067 Sum_probs=93.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCC--CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHH----------hHhhHH
Q 042564 24 FDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYG----------ASFGGE 91 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g--~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~----------~~~~~~ 91 (498)
++|+||||||+|+++|.+|.+.+ .+|+|+|+ ...+|....+...-|++.++.. ..+..-
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp---------~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~W 72 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQ---------ADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEW 72 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEec---------CCCCCcceeecCCCChHHHHhcccccccCCChHHHHHH
Confidence 58999999999999999998754 59999994 2334433333332222222111 011111
Q ss_pred Hhh-----hhcCCccccc--ccccCHHH-HHHHHHHHHHHHhHHHHHHHHhCC--cEEEEe-EEEEE--eCCEEEEEeCC
Q 042564 92 LED-----ARSYGWEVHE--KIDFDWKK-LLQKKTDEILRLNGIYKRLLSNAG--VKLYEG-EGKIV--GPNEVEVTQLD 158 (498)
Q Consensus 92 ~~~-----~~~~g~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~~-~~~~i--~~~~~~v~~~~ 158 (498)
... ...++..... ...+-... +..+....+. .+...+.+.| +.++.+ .++.+ +.+.+.+.+.+
T Consensus 73 l~~~~~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~----~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~ 148 (534)
T PRK09897 73 LQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFL----RLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ 148 (534)
T ss_pred hhhhhHHHHHhcCCcceeecCCccCCeecchHHHHHHHH----HHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECC
Confidence 100 1111111100 00010000 1111122221 2222334455 566655 45554 34567777644
Q ss_pred CceEEEEcCeEEEcCCCCCCCCCCCCCC-cccChHHHhcccc-CCCeEEEEcCCHHHHHHHHHHHHC
Q 042564 159 GTKLSYSAKHILIATGSRAQRAPIPGQE-LAITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGM 223 (498)
Q Consensus 159 g~~~~~~~d~liiAtG~~p~~p~i~g~~-~~~~~~~~~~l~~-~~~~v~ViG~G~~g~e~a~~l~~~ 223 (498)
+ ...+.+|+||+|||..+..+. ++.. ++.+.+....+.. ...+|+|+|.|.++++.+..|...
T Consensus 149 g-g~~i~aD~VVLAtGh~~p~~~-~~~~~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 149 D-LPSETFDLAVIATGHVWPDEE-EATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred C-CeEEEcCEEEECCCCCCCCCC-hhhccccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 3 137899999999996432111 1111 1112222111111 257999999999999999888755
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-09 Score=114.40 Aligned_cols=154 Identities=20% Similarity=0.179 Sum_probs=85.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccc------------------------cccCchh
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTC------------------------VIRGCVP 78 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~------------------------~~~g~~p 78 (498)
++||||||||.||++||+.+++.|.+|+||||...... ......||.. ....|-|
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s-~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D~ 83 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS-HSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCDQ 83 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc-chHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCCH
Confidence 58999999999999999999999999999996322110 0011112211 0123555
Q ss_pred hHHHHHHhHhhHHHhhhhcCCcccccccc-----------------------c---CHHHHHHH-----HHHHHHHHhHH
Q 042564 79 KKILVYGASFGGELEDARSYGWEVHEKID-----------------------F---DWKKLLQK-----KTDEILRLNGI 127 (498)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-----------------------~---~~~~~~~~-----~~~~~~~~~~~ 127 (498)
..+.......+..+..+..+|.++..... + .+.....+ .+.....+...
T Consensus 84 ~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~~ 163 (657)
T PRK08626 84 EVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLYA 163 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHHH
Confidence 54445555555566666666665432110 0 00000000 00001112223
Q ss_pred HHHHHHhCCcEEEEeE-EEEE--eCCE---EEEEe-CCCceEEEEcCeEEEcCCCCC
Q 042564 128 YKRLLSNAGVKLYEGE-GKIV--GPNE---VEVTQ-LDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 128 ~~~~~~~~gv~~~~~~-~~~i--~~~~---~~v~~-~~g~~~~~~~d~liiAtG~~p 177 (498)
+...+.+.|++++.++ +..+ +.+. +.+.. .+|+...+.++.||||||.-.
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4444566799998886 3332 4444 33433 467666788999999999654
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=112.75 Aligned_cols=46 Identities=28% Similarity=0.549 Sum_probs=35.2
Q ss_pred CCCeEcCCCCCCCCCCeEEecccCC-C----CCC----hHHHHHHHHHHHHHHhC
Q 042564 315 TGAVKVDENSRTNVPSIWAVGDVTN-R----MNL----TPVALMEGTCFAKTVFG 360 (498)
Q Consensus 315 ~g~i~vd~~~~t~~~~iya~GD~~~-~----~~~----~~~A~~~g~~aa~~i~~ 360 (498)
.|+|.||.+.+|++|++||+|+|+. + ..+ ...|.-.|+++++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999973 2 111 23456678888888764
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-09 Score=113.93 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||||||||.||++||+++++.|.+|+||||
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK 43 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSK 43 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence 358999999999999999999999999999996
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=112.65 Aligned_cols=138 Identities=21% Similarity=0.338 Sum_probs=75.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhh-----
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDA----- 95 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~----- 95 (498)
+.+|||||||||+||+.||..+++.|.+|+|||+ . ...+|+ ..|.|+.--+..+.+.+.+..+
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~------~--~d~iG~----m~CnpsiGG~akg~lvrEidalGg~~g 69 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTH------N--LDTIGQ----MSCNPAIGGIAKGHLVREIDALGGEMG 69 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEec------c--cccccc----cCCccccccchhhHHHHHHHhcCCHHH
Confidence 3469999999999999999999999999999994 1 123443 2344432211111111111111
Q ss_pred ---hcCCcccc--c---ccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEE--eCCEEE-EEeCCCceEE
Q 042564 96 ---RSYGWEVH--E---KIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIV--GPNEVE-VTQLDGTKLS 163 (498)
Q Consensus 96 ---~~~g~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i--~~~~~~-v~~~~g~~~~ 163 (498)
...+..+. . .+.+ |. .+..-....+...+...+.+. +++++.+++..+ +.+.+. |.+.+|. .
T Consensus 70 ~~~d~~giq~r~ln~skGpAV-~s---~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~--~ 143 (618)
T PRK05192 70 KAIDKTGIQFRMLNTSKGPAV-RA---LRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGL--E 143 (618)
T ss_pred HHHhhccCceeecccCCCCce-eC---cHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCC--E
Confidence 01111100 0 0000 00 000111122334444445544 899888876654 444443 6666665 8
Q ss_pred EEcCeEEEcCCCC
Q 042564 164 YSAKHILIATGSR 176 (498)
Q Consensus 164 ~~~d~liiAtG~~ 176 (498)
+.++.||+|||..
T Consensus 144 I~Ak~VIlATGTF 156 (618)
T PRK05192 144 FRAKAVVLTTGTF 156 (618)
T ss_pred EECCEEEEeeCcc
Confidence 9999999999963
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=112.46 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 26 LFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 26 vvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|||||+|.||++||+.+++.|.+|+|+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK 29 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSY 29 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEe
Confidence 69999999999999999999999999996
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=108.40 Aligned_cols=146 Identities=19% Similarity=0.222 Sum_probs=77.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCCccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYGWEV 102 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g~~~ 102 (498)
+||+||||||||++||+.|++.|++|+|+|+. ...+..| .+|+|.+.+....-....+. .........
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~---------~~~~~~c--g~~i~~~~l~~~g~~~~~~~~~i~~~~~~~ 69 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERK---------PDNAKPC--GGAIPLCMVDEFALPRDIIDRRVTKMKMIS 69 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecC---------CCCCCCc--cccccHhhHhhccCchhHHHhhhceeEEec
Confidence 58999999999999999999999999999951 1223445 35666544422110001111 011100000
Q ss_pred ccccccCHHHHH---HHH-HHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe-----CCEEEEE--eCC-----CceEEEEc
Q 042564 103 HEKIDFDWKKLL---QKK-TDEILRLNGIYKRLLSNAGVKLYEGEGKIVG-----PNEVEVT--QLD-----GTKLSYSA 166 (498)
Q Consensus 103 ~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~-----~~~~~v~--~~~-----g~~~~~~~ 166 (498)
.....+++.... .+. .-....+...+.....+.|++++.+++..+. ...+.|+ ..+ |+..++++
T Consensus 70 p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a 149 (398)
T TIGR02028 70 PSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEV 149 (398)
T ss_pred CCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEe
Confidence 000111111000 000 0001223334445566679999888765442 1223333 222 44457999
Q ss_pred CeEEEcCCCCCCCC
Q 042564 167 KHILIATGSRAQRA 180 (498)
Q Consensus 167 d~liiAtG~~p~~p 180 (498)
+.||.|+|....+.
T Consensus 150 ~~VIgADG~~S~v~ 163 (398)
T TIGR02028 150 DAVIGADGANSRVA 163 (398)
T ss_pred CEEEECCCcchHHH
Confidence 99999999876544
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.7e-08 Score=98.24 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
...+.+.+.+.+++.|++++++++|.++..+++.+.|.+.+| ++.+|.||+|+|..+.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchH
Confidence 467888888999999999999999999987776677777776 6999999999998753
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.2e-08 Score=101.22 Aligned_cols=69 Identities=30% Similarity=0.420 Sum_probs=55.8
Q ss_pred CCccccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---chhhHHHHHHhHhhH
Q 042564 14 PNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---CVPKKILVYGASFGG 90 (498)
Q Consensus 14 ~~~~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---~~p~~~l~~~~~~~~ 90 (498)
|......+.++||||||+| +|++||+.+++.|.+|+|||| ...+||+|.+.| |+|++.+.......+
T Consensus 7 ~~~~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek---------~~~~GG~~~~~gG~~~~~~~~~~~~~g~~d 76 (564)
T PRK12845 7 PAGTPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEK---------SSYVGGSTARSGGAFWLPASPVLDEAGAGD 76 (564)
T ss_pred CCCCCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEec---------CCCCcCcccCcCCCEecCChHHHHHhCcch
Confidence 3344444557999999999 899999999999999999995 457899999998 999988876655444
Q ss_pred HH
Q 042564 91 EL 92 (498)
Q Consensus 91 ~~ 92 (498)
..
T Consensus 77 s~ 78 (564)
T PRK12845 77 TL 78 (564)
T ss_pred hH
Confidence 33
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.3e-08 Score=96.89 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEE-EEECCCeEEEcCEEEEecCCCcCC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-VITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
...+.+.+.+.+++.|++++.+++|.++..+++.+. |.+.+|+ +.+|.||+|+|.....
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 467888899999999999999999999999988876 9999997 9999999999986544
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.8e-08 Score=97.69 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
.+-+.+.+.+++.|++++.++.|.++..+++.+.....++.++.+|.||.|+|..+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 34455666777889999999999998876665544455677899999999999854
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-07 Score=94.04 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC-----eEEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG-----EEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-----~~i~~D~vi~a~G~~p 298 (498)
..+...+.+.+++.|++++.+++|.++..+++.+.+.+.++ .++.+|.||+|+|...
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 35667778888999999999999999987766665554332 3689999999999764
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.2e-08 Score=95.79 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC-eEEEEECCCeE-EEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEE-GVKVITDHGEE-IVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~-i~~D~vi~a~G~~p~~ 300 (498)
.++...+.+.++++|++++++++|..|+..++ ...+.+.+|++ ++|+.||.|.|.....
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 45778888888999999999999999999888 46677788876 9999999999975543
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.8e-08 Score=96.28 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
+++.+.+.+.+.+.|+++++++.+.++..+++.+.+.+.+|+++.+|.||.|+|..+...
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r 166 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVR 166 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchh
Confidence 467777888888889999999999999887777888888998999999999999887664
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.6e-08 Score=97.36 Aligned_cols=60 Identities=22% Similarity=0.337 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
..+.+.+.+.+++.|+++++++.|+++..+++.+.+++++|+++.+|.||.|.|..+...
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr 172 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAASTLR 172 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCchHH
Confidence 356777778888889999999999999888777888888888899999999999988653
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.3e-08 Score=98.98 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=57.7
Q ss_pred HHHHHHHCCCcEEEEeeCCCCCCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEe
Q 042564 216 FASIWRGMGSTVDLLFRKELPLRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFA 293 (498)
Q Consensus 216 ~a~~l~~~g~~V~lv~~~~~~l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a 293 (498)
+...+.+.|.+++.... .++++. ...++.+.+.+.+++.|+++++++.|.++..+++.+.+.+ +++++.+|.||+|
T Consensus 78 ~~~~~~~~Gv~~~~~~~-g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlA 155 (400)
T TIGR00275 78 LIDFFESLGLELKVEED-GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILA 155 (400)
T ss_pred HHHHHHHcCCeeEEecC-CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEEC
Confidence 33445555655554432 222222 3467888889999999999999999999977666666666 4567999999999
Q ss_pred cCCCc
Q 042564 294 TGRAP 298 (498)
Q Consensus 294 ~G~~p 298 (498)
+|..+
T Consensus 156 tG~~s 160 (400)
T TIGR00275 156 TGGLS 160 (400)
T ss_pred CCCcc
Confidence 99754
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=96.07 Aligned_cols=58 Identities=12% Similarity=0.250 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
++.+.+.+.+.+. ++++++++.+.++..+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence 3566667766665 599999999999987777788888889889999999999987765
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.3e-08 Score=94.56 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=83.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC---C--------CCCC-----CHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL---P--------LRGF-----DDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~---~--------l~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
+|+|||+|+.|+++|..|.+.|.+|+++++.+. + ++.+ +.++...+.+.+++.|+++++ ..|.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999998651 0 1222 357888888889999999998 7899
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
++..+++.+.+.+.+++++.+|.+|+|+|..|+...
T Consensus 81 ~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 81 KVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLG 116 (300)
T ss_pred EEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCC
Confidence 998877667788888888999999999999987654
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.6e-09 Score=104.13 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|||+||||||||++||+.|++.|.+|+|+||
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk 34 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEK 34 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEec
Confidence 369999999999999999999999999999996
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-07 Score=93.23 Aligned_cols=57 Identities=18% Similarity=0.182 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
..+...+.+.+.+.|++++.+++|+++..+++.+.+.+++| .+.+|.||+|+|....
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 45666677777888999999999999988777777888777 6999999999997643
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-07 Score=95.66 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
+..+...+.+.+++.|++++.++.|.++.. ++...|.+.+| ++.+|.||+|+|....
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 456778888889999999999999999975 34466777777 5999999999996543
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.3e-08 Score=98.52 Aligned_cols=142 Identities=18% Similarity=0.030 Sum_probs=73.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g~ 100 (498)
..|||+||||||||+++|..|++.|.+|+|+|+... ... .+..|+-...+ ....+.+.+. .......
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~------~~~-----p~~~g~w~~~l-~~lgl~~~l~~~w~~~~v 94 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL------SIW-----PNNYGVWVDEF-EALGLLDCLDTTWPGAVV 94 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc------chh-----ccccchHHHHH-HHCCcHHHHHhhCCCcEE
Confidence 458999999999999999999999999999994211 100 01111100000 0001111111 1111000
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
............ .+..-....+...+.+.+.+.|++++.+.+..++ .+.+.|.+++|. .+++|.||.|+|..+.
T Consensus 95 ~~~~~~~~~~~~--~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~--~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 95 YIDDGKKKDLDR--PYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGV--KIQASLVLDATGFSRC 170 (447)
T ss_pred EEeCCCCccccC--cceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCC--EEEcCEEEECcCCCcC
Confidence 000000000000 0000001122233334445678998876666553 445677777765 8999999999997765
Q ss_pred C
Q 042564 179 R 179 (498)
Q Consensus 179 ~ 179 (498)
.
T Consensus 171 l 171 (447)
T PLN02463 171 L 171 (447)
T ss_pred c
Confidence 3
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.5e-08 Score=91.18 Aligned_cols=33 Identities=36% Similarity=0.636 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||+||||||||++||+.|++.|++|+|+|+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk 56 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEec
Confidence 358999999999999999999999999999995
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.2e-07 Score=90.85 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
...+.+.+.+.+++.|++++.+++|.++..+++.+.|.+.++ ++.+|.||+|+|...
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch
Confidence 345677788888889999999999999988777777777666 699999999999753
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=95.01 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCC-CEEEcCccEEEEEEeCCeEEEEEC-CCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGRG-INLHPRTTIKELIKSEEGVKVITD-HGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~p~~ 300 (498)
.++.+.+.+.+.+.+ |+++.+++|+.+..+++.+.++++ +|++++||++|-|-|..+..
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~v 164 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAV 164 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHH
Confidence 457788888888775 999999999999998888788888 99999999999999976644
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-08 Score=100.19 Aligned_cols=33 Identities=30% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|||+||||||||+++|+.|++.|++|+|+|+
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr 70 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIER 70 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 469999999999999999999999999999996
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-07 Score=92.94 Aligned_cols=58 Identities=21% Similarity=0.386 Sum_probs=46.6
Q ss_pred HHHHHHHHH-HhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 244 MRAVVARNL-EGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 244 ~~~~l~~~l-~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
+.+.+.+.+ +..|++++++++|.+++.+++.+.|.+++|+++.+|.||.|.|..+...
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr 170 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSATR 170 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchhh
Confidence 344444444 3469999999999999877777888888898999999999999987654
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-07 Score=94.78 Aligned_cols=58 Identities=16% Similarity=0.270 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+++.|++++.++.+.+++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchh
Confidence 4566677777788999999999999988877888888899889999999999987754
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.4e-08 Score=98.28 Aligned_cols=132 Identities=19% Similarity=0.145 Sum_probs=71.6
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccc---cccCchhhHHHHHHhHhhHHH-hhhhc-CC
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTC---VIRGCVPKKILVYGASFGGEL-EDARS-YG 99 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~---~~~g~~p~~~l~~~~~~~~~~-~~~~~-~g 99 (498)
||+||||||||+++|+.|++.|.+|+|||+ . ...|+.+ .+..+++... +.... ..... +.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~------~---~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 65 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEP------H---PPIPGNHTYGVWDDDLSDLG------LADCVEHVWPDVYE 65 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEcc------C---CCCCCCccccccHhhhhhhc------hhhHHhhcCCCceE
Confidence 799999999999999999999999999995 1 2233332 1111221110 01111 11111 00
Q ss_pred ccccc-ccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe---CCEEEEEeCCCceEEEEcCeEEEcCCC
Q 042564 100 WEVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG---PNEVEVTQLDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~---~~~~~v~~~~g~~~~~~~d~liiAtG~ 175 (498)
+.... ....... +..-....+...+.+.+.+.+++++.+++..+. ...+.|...+|. +++++.||.|+|.
T Consensus 66 ~~~~~~~~~~~~~----~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~--~~~a~~VI~A~G~ 139 (388)
T TIGR01790 66 YRFPKQPRKLGTA----YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQ--RIQARLVIDARGF 139 (388)
T ss_pred EecCCcchhcCCc----eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCC--EEEeCEEEECCCC
Confidence 00000 0000000 000001223333444455668888877766553 335666666664 7999999999997
Q ss_pred CC
Q 042564 176 RA 177 (498)
Q Consensus 176 ~p 177 (498)
.+
T Consensus 140 ~s 141 (388)
T TIGR01790 140 GP 141 (388)
T ss_pred ch
Confidence 76
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.8e-08 Score=100.14 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=31.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..++||||||+|.||++||+.+++.|.+|+||||
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK 92 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEK 92 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC
Confidence 3578999999999999999999999999999995
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=95.95 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
+-+.+.+.+++.|++++.++.|+++..+++.+.....++.++.+|.||.|.|..+..
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v 166 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSML 166 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcchhh
Confidence 344556667778999999999999887665554333455679999999999986544
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-08 Score=95.14 Aligned_cols=31 Identities=39% Similarity=0.539 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~ 31 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEK 31 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 6999999999999999999999999999995
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-07 Score=95.86 Aligned_cols=35 Identities=43% Similarity=0.611 Sum_probs=32.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+..++||||||||.||+.||+.+++.|.+|+|+||
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K 37 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSK 37 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEc
Confidence 34578999999999999999999999999999996
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=100.30 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=84.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---------------------chhhH
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---------------------CVPKK 80 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---------------------~~p~~ 80 (498)
.++||+|||||.||++||+++++.|.+|+|+||....-. ......||.+...+ |-|.-
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g-~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS-HTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC-CchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 468999999999999999999999999999996322111 11111233221111 12222
Q ss_pred HHHHHhHhhHHHhhhhcCCcccccccc--cC---HHHHH---------HH----HHHHHHHHhHHHHHHHHhCCcEEEEe
Q 042564 81 ILVYGASFGGELEDARSYGWEVHEKID--FD---WKKLL---------QK----KTDEILRLNGIYKRLLSNAGVKLYEG 142 (498)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~---~~~~~---------~~----~~~~~~~~~~~~~~~~~~~gv~~~~~ 142 (498)
+.....+....+..+..+|+++..... +. +.... .+ .+..-..+...+.....+.+++++.+
T Consensus 107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 186 (617)
T PTZ00139 107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEec
Confidence 223333344455566677776643111 00 00000 00 00011233344445455679999988
Q ss_pred E-EEE-E--eCCEEE---E-EeCCCceEEEEcCeEEEcCCCCC
Q 042564 143 E-GKI-V--GPNEVE---V-TQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 143 ~-~~~-i--~~~~~~---v-~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+ +.. + +.+.+. + ...+|+...+.++.||+|||.-.
T Consensus 187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 6 332 3 233322 2 22466667889999999999653
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-07 Score=87.40 Aligned_cols=33 Identities=36% Similarity=0.556 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|||+||||||+|++||+.|++.|.+|+|+||
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk 52 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLER 52 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 368999999999999999999999999999995
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-06 Score=89.59 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEECCCeEEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
..+...+.+.+++.|++++++++|+++..+++.+ .+.+.++ ++.+|.||+|+|...
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 4567778888889999999999999998766664 4555544 689999999999754
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.7e-07 Score=90.63 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+.+. |+++++++++.+++.+++.+.+++.+|+++.+|+||-|.|..+..
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHH
Confidence 4666677777664 899999999999988777888888899999999999999987755
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-08 Score=102.44 Aligned_cols=137 Identities=29% Similarity=0.348 Sum_probs=36.1
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHH-----HHHHhHhhHHHhhhhcCC
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI-----LVYGASFGGELEDARSYG 99 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~-----l~~~~~~~~~~~~~~~~g 99 (498)
||||||||+||++||+.+++.|.+|+|||+ ...+||.....+..+..- .....-+.+........+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~---------~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~ 71 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEK---------GGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARG 71 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-S---------SSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEEC---------CccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhc
Confidence 899999999999999999999999999995 556777765444221100 111111122222222211
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEE-EE--eCC---EEEEEeCCCceEEEEcCeEEEcC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGK-IV--GPN---EVEVTQLDGTKLSYSAKHILIAT 173 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~-~i--~~~---~~~v~~~~g~~~~~~~d~liiAt 173 (498)
.. .......|..-.. -....+...+.+.+.+.|++++.++.. .+ +.+ .+.+...+| ..++.++.+|-||
T Consensus 72 ~~-~~~~~~~~~~~~~---~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaT 146 (428)
T PF12831_consen 72 GY-PQEDRYGWVSNVP---FDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDAT 146 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc-ccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 10 0000111110000 111223344555667789999988733 22 332 233433344 5689999999999
Q ss_pred CC
Q 042564 174 GS 175 (498)
Q Consensus 174 G~ 175 (498)
|.
T Consensus 147 G~ 148 (428)
T PF12831_consen 147 GD 148 (428)
T ss_dssp --
T ss_pred cc
Confidence 93
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=97.85 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=32.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|..++||||||+|+||++||++|++.|.+|+||||
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk 35 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEA 35 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 44568999999999999999999999999999995
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.5e-07 Score=90.26 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=47.9
Q ss_pred HHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 244 MRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 244 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
+...+.+.+.+ .|++++.++++.+++.+++++.+++++|+++.+|+||.|.|..+..-
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVR 170 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhH
Confidence 44455555544 47999999999999888888889999999999999999999988764
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=91.43 Aligned_cols=32 Identities=38% Similarity=0.503 Sum_probs=29.9
Q ss_pred CccEEEECCChhHHHHHHHHHhC-CCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lvek 54 (498)
++||+|||||++|++||+.|++. |++|+|+|+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk 124 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQ 124 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 68999999999999999999974 899999995
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.4e-07 Score=88.17 Aligned_cols=60 Identities=27% Similarity=0.473 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC---CCe--EEEcCEEEEecCCCcCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD---HGE--EIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~~~ 301 (498)
..+.+.+.+.+++.|+++++++.+..+..+.+++.+.+. +|+ ++.+|+||-|-|.++...
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR 175 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVR 175 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHH
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchh
Confidence 357788888888889999999999999988887555443 333 689999999999877553
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6e-07 Score=87.61 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=64.2
Q ss_pred HHHCCCcEEEEeeC-CCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCC
Q 042564 220 WRGMGSTVDLLFRK-ELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 220 l~~~g~~V~lv~~~-~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
+...|+...++.-. +++-...-+.+.+.+.+.+++.|++++++++|.+|..+++. ..+.+++|.++.+|.||+|+|+.
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 44556655555433 34444466789999999999999999999999999887764 67788899999999999999987
Q ss_pred cCCC
Q 042564 298 PNTK 301 (498)
Q Consensus 298 p~~~ 301 (498)
....
T Consensus 230 g~dw 233 (486)
T COG2509 230 GRDW 233 (486)
T ss_pred hHHH
Confidence 6554
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=96.18 Aligned_cols=30 Identities=47% Similarity=0.556 Sum_probs=27.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
||||||+|.||++||++|++.|.+|+||||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek 30 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEK 30 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEES
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEe
Confidence 899999999999999999999999999995
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-06 Score=87.76 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..+.+.+.+.+.+. ++. +++++|.++..+++.+.+++++|+++.+|.||.|.|..+..
T Consensus 111 ~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (388)
T PRK07494 111 WLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPV 169 (388)
T ss_pred HHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchh
Confidence 34566677777666 465 78999999988888888888888899999999999987654
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-07 Score=94.08 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHCCCcEEEEeeCCCCC---CCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe--CC-e--EEEEEC-C
Q 042564 211 YIAVEFASIWRGMGSTVDLLFRKELPL---RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKS--EE-G--VKVITD-H 281 (498)
Q Consensus 211 ~~g~e~a~~l~~~g~~V~lv~~~~~~l---~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~-~--~~v~~~-~ 281 (498)
.++.|+...+.++=.++.-+.....+. ....+.+...+.+.++++||++++++.|+++..+ ++ + ..|... +
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~ 271 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN 271 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence 578899888876521111111111110 1134678899999999999999999999999874 22 2 334442 2
Q ss_pred C--e---EEEcCEEEEecCCCcCCC
Q 042564 282 G--E---EIVADVVLFATGRAPNTK 301 (498)
Q Consensus 282 g--~---~i~~D~vi~a~G~~p~~~ 301 (498)
| + ..+.|.||+++|.-....
T Consensus 272 ~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 272 GKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred CceeEEEecCCCEEEEeCCcCcccc
Confidence 2 2 245899999999654443
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.5e-07 Score=89.68 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
++.+.+.+.+. .+++++++++|.+++.+++++.+++++|+++.+|.||-|.|.++..-
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccch
Confidence 34444555443 37999999999999888888888999999999999999999877664
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=95.84 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|||+||||||||+++|+.|++.|.+|+|+|+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~ 31 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLER 31 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 7999999999999999999999999999995
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-06 Score=92.45 Aligned_cols=58 Identities=33% Similarity=0.484 Sum_probs=47.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---chhhHHHHHHh
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---CVPKKILVYGA 86 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---~~p~~~l~~~~ 86 (498)
++.++||+|||+|.+|++||+.|++.|.+|+|+|| ....||+|.+.+ |+|.+.+....
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek---------~~~~gg~~~~~~g~~~~~~~~~~~~~ 65 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEK---------ASTCGGATAWSGGWMWTPGNSLARAD 65 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEec---------CCCCCccccccCCeeecCCchhhhhc
Confidence 34578999999999999999999999999999995 446789988876 77876654443
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.6e-07 Score=90.88 Aligned_cols=59 Identities=22% Similarity=0.373 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..+.+.+.+.+.+.|+++++++.|+++..+++.+.+++.+|+++.+|.||.|.|..+..
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKL 169 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHH
Confidence 45777788888888999999999999988877888888888899999999999987764
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-08 Score=99.87 Aligned_cols=126 Identities=25% Similarity=0.359 Sum_probs=65.9
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhh------HHHHHH-hHhhHHH-hhhh
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPK------KILVYG-ASFGGEL-EDAR 96 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~------~~l~~~-~~~~~~~-~~~~ 96 (498)
||+|||||+||+.||+.+++.|.+|+|+.. . ... +....|.|+ ..+..- ..+...+ ....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~-----~---~d~----i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD 68 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITH-----N---TDT----IGEMSCNPSIGGIAKGHLVREIDALGGLMGRAAD 68 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES---------GGG----TT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEee-----c---ccc----cccccchhhhccccccchhHHHhhhhhHHHHHHh
Confidence 899999999999999999999999999941 0 122 222333332 222111 0000000 0000
Q ss_pred cCCccc----------cccc--ccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEEE--eCCE-EEEEeCCCc
Q 042564 97 SYGWEV----------HEKI--DFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKIV--GPNE-VEVTQLDGT 160 (498)
Q Consensus 97 ~~g~~~----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~i--~~~~-~~v~~~~g~ 160 (498)
..+..+ ...+ .+|- ..+...+.+.+.+ .+++++.+++..+ +.+. .-|.+.+|.
T Consensus 69 ~~~i~~~~lN~skGpav~a~r~qvDr-----------~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~ 137 (392)
T PF01134_consen 69 ETGIHFRMLNRSKGPAVHALRAQVDR-----------DKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGE 137 (392)
T ss_dssp HHEEEEEEESTTS-GGCTEEEEEE-H-----------HHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSE
T ss_pred HhhhhhhcccccCCCCccchHhhccH-----------HHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCC
Confidence 111100 0001 1221 1233344445555 5899998887755 3343 445667765
Q ss_pred eEEEEcCeEEEcCCC
Q 042564 161 KLSYSAKHILIATGS 175 (498)
Q Consensus 161 ~~~~~~d~liiAtG~ 175 (498)
.+.+|.+|+|||.
T Consensus 138 --~~~a~~vVlaTGt 150 (392)
T PF01134_consen 138 --EIEADAVVLATGT 150 (392)
T ss_dssp --EEEECEEEE-TTT
T ss_pred --EEecCEEEEeccc
Confidence 8999999999997
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.1e-07 Score=90.72 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+++. |+++++++.+.++..+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchh
Confidence 3556666666666 999999999999987777788888888889999999999998764
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-07 Score=96.10 Aligned_cols=143 Identities=19% Similarity=0.213 Sum_probs=77.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHH--HHHhHhhHHHhh----h-
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL--VYGASFGGELED----A- 95 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l--~~~~~~~~~~~~----~- 95 (498)
++||+||||||+|+++|+.|++.|.+|+|+|+... ....+ . ..+++....+ +..-...+.+.. .
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~------~~~~~-~--Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~ 73 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN------QELVG-S--RAGGLHARTLEVLDQRGIADRFLAQGQVAQ 73 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC------CCCCC-c--ceeeECHHHHHHHHHcCcHHHHHhcCCccc
Confidence 48999999999999999999999999999995221 11011 0 0112222221 111111111110 0
Q ss_pred -hcCCcccccccccCHHHHHH---HH-HHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEeCCCceEEEEcC
Q 042564 96 -RSYGWEVHEKIDFDWKKLLQ---KK-TDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQLDGTKLSYSAK 167 (498)
Q Consensus 96 -~~~g~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~~~g~~~~~~~d 167 (498)
..++. ..+++..+.. .. .-....+...+.+.+++.+++++.++ +..+ +.+.+.++..+|. ++++|
T Consensus 74 ~~~~~~-----~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~--~i~a~ 146 (488)
T PRK06834 74 VTGFAA-----TRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGR--TLRAQ 146 (488)
T ss_pred cceeee-----EecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCC--EEEeC
Confidence 00110 0111110000 00 00012233445555666789998876 3333 4566777776664 79999
Q ss_pred eEEEcCCCCCCCCC
Q 042564 168 HILIATGSRAQRAP 181 (498)
Q Consensus 168 ~liiAtG~~p~~p~ 181 (498)
+||.|.|..+....
T Consensus 147 ~vVgADG~~S~vR~ 160 (488)
T PRK06834 147 YLVGCDGGRSLVRK 160 (488)
T ss_pred EEEEecCCCCCcHh
Confidence 99999998776543
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.9e-07 Score=91.96 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHh----CC--CEEEcCccEEEEEEe-CCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEG----RG--INLHPRTTIKELIKS-EEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~----~G--v~i~~~~~v~~i~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
..+...+.+.+++ .| ++++++++|++|..+ ++.+.|.+.+| ++.+|.||+|+|....
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 4677888888888 77 889999999999877 33467777777 5999999999997654
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-06 Score=91.91 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE---CCCeEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT---DHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+.+.|+++++++++.+++.+++++.+++ .+++++.+|.||.|.|.++..
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFV 170 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHH
Confidence 3456677778888999999999999988777777766 566789999999999987643
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=88.39 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=47.0
Q ss_pred HHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 244 MRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 244 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
+.+.+.+.+.+ .|++++++++++++..+++.+.+++++|+++.+|+||.|.|..+..
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWL 170 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCChh
Confidence 44555666655 4799999999999988777888889999999999999999987654
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=94.32 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAP 36 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEec
Confidence 57999999999999999999999999999995
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.3e-07 Score=94.96 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
..+.+.+.+.+++.|++++++++|.+|..+++. +.|.+.+|+++.+|.||++++...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence 568888999999999999999999999877655 578888888899999999988643
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.5e-07 Score=95.94 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=81.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---------------------chhhHH
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---------------------CVPKKI 81 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---------------------~~p~~~ 81 (498)
++||||||||.||++||+++++.|.+|+|+||...... ......||.+...+ |-|..+
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g-~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS-HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC-ccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 58999999999999999999999999999996211100 00111122221101 222223
Q ss_pred HHHHhHhhHHHhhhhcCCcccccccccCH--HHHHH-----------H----HHHHHHHHhHHHHHHHHhCCcEEEEeE-
Q 042564 82 LVYGASFGGELEDARSYGWEVHEKIDFDW--KKLLQ-----------K----KTDEILRLNGIYKRLLSNAGVKLYEGE- 143 (498)
Q Consensus 82 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~-----------~----~~~~~~~~~~~~~~~~~~~gv~~~~~~- 143 (498)
.....+....+..+..+|+++.....-.+ ...-. + ....-..+...+.....+.+++++.++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~ 165 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWY 165 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcE
Confidence 33333444555556667776643110000 00000 0 000011233333344445689988876
Q ss_pred EE-EE-e-CCEE---EE-EeCCCceEEEEcCeEEEcCCCCC
Q 042564 144 GK-IV-G-PNEV---EV-TQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 144 ~~-~i-~-~~~~---~v-~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+. .+ + .+.+ .+ ...+|....+.++.||||||.-.
T Consensus 166 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 166 ALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred EEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 33 23 2 3332 12 23466666789999999999654
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.2e-07 Score=93.35 Aligned_cols=33 Identities=39% Similarity=0.549 Sum_probs=31.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..|||+||||||||+++|..|++.|++|+|||+
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~ 139 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGP 139 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecC
Confidence 458999999999999999999999999999994
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-06 Score=90.49 Aligned_cols=34 Identities=35% Similarity=0.388 Sum_probs=32.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.++||||||+|.||++||++|++.|.+|+|+||
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK 51 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLER 51 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 4579999999999999999999999999999995
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-07 Score=94.80 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=36.5
Q ss_pred CCCccccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 13 QPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 13 ~~~~~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.|.....+...+||+||||||||+++|+.|++.|++|+|+|+
T Consensus 8 ~~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 49 (415)
T PRK07364 8 SPTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEA 49 (415)
T ss_pred CCCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEec
Confidence 344555566679999999999999999999999999999995
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.4e-07 Score=91.37 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..++.+.+.+.++..|.+++++++|.+|..++++ ..|++.+|+++.|+.||......|..
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~ 292 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDK 292 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccc
Confidence 3568888888889999999999999999876543 67888899999999999988877763
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-06 Score=93.39 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
...+...+.+.+++ |++++.+++|.++..+++.+.|.+.+|..+.+|.||+|+|....
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 45677888888888 99999999999998877777788888877889999999997653
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-06 Score=86.61 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCC-CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGRG-INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..+.+.+.+.+.+.| ++++.+++|+++..+++++.+.+++|+++.+|.||.|.|.....
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~v 165 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKV 165 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCHH
Confidence 346677777777777 99999999999988777788888899899999999999987653
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-06 Score=91.70 Aligned_cols=45 Identities=36% Similarity=0.552 Sum_probs=38.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG 75 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g 75 (498)
.++||+|||+|.+|++||+.|++.|.+|+|||| ....||+|.+.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk---------~~~~gG~~~~s~ 49 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEK---------QDKVGGSTAMSG 49 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEec---------CCCCCceeceec
Confidence 468999999999999999999999999999995 335678876654
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.6e-07 Score=92.40 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC----eEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG----EEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g----~~i~~D~vi~a~G~~p 298 (498)
+..+...+....++.|++++.+++|.++..+++.+.+.+.++ .++.++.||.|+|...
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 466767777778899999999999999987766666665543 2589999999999754
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=93.40 Aligned_cols=138 Identities=16% Similarity=0.109 Sum_probs=71.3
Q ss_pred cEEEECCChhHHHHHHHH--HhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHH-hhhhcCCcc
Q 042564 25 DLFVIGAGSGGVRAARFS--ANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGEL-EDARSYGWE 101 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l--~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~-~~~~~~g~~ 101 (498)
|||||||||||+++|.+| ++.|.+|+|||+... . .....|.| |.-.+.+.. +.+.+ ..+..+-+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~------~-~~~~~~tW--~~~~~~~~~---~~~~v~~~w~~~~v~ 68 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK------P-PWPNDRTW--CFWEKDLGP---LDSLVSHRWSGWRVY 68 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc------c-cccCCccc--ccccccccc---hHHHHheecCceEEE
Confidence 899999999999999999 779999999995211 1 11333311 111000000 00111 111111111
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
....... ... ..+..-....+...+.+.+.+.++.++...+..++.. ...|.+.+|. +++++.||-|+|..+.
T Consensus 69 ~~~~~~~-~~~-~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~--~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 69 FPDGSRI-LID-YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGR--TIRARVVVDARGPSSP 143 (374)
T ss_pred eCCCceE-Ecc-cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCC--EEEeeEEEECCCcccc
Confidence 1110000 000 0000000112223333444456777777777776544 4567777876 8999999999995543
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-06 Score=88.60 Aligned_cols=59 Identities=22% Similarity=0.438 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 243 EMRAVVARNLEG-RGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 243 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
++.+.+.+.+.+ .|+++++++++..+..++++ +.+++++|+++.+|.||-|.|..+..-
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR 168 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIR 168 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHH
Confidence 455666666654 58999999999999876555 467888898999999999999876543
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.1e-07 Score=89.22 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=29.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+|||+||||||||+++|+.|++. .+|+|+|+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~ 31 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDK 31 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEEC
Confidence 38999999999999999999999 99999995
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-07 Score=92.23 Aligned_cols=30 Identities=37% Similarity=0.501 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHhCC-CcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFG-AKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek 54 (498)
||||||||.||++||++|++.| .+|+||||
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk 31 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEK 31 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEec
Confidence 8999999999999999999999 99999995
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-06 Score=83.31 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
++.+.+.+.+ ..|++++++++|++++.+++++.+++++|+++.+|+||-|-|.++..-
T Consensus 106 ~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR 163 (372)
T PRK05868 106 DLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVR 163 (372)
T ss_pred HHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHH
Confidence 3444443322 458999999999999877778889999999999999999999877654
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.8e-06 Score=85.04 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
+..+...+.+.+.+. |++++.+++|.++... .|.+.+|+ +.+|.||+|+|...+
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCChh
Confidence 345667777777765 9999999999999642 56777774 789999999997654
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=90.37 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=35.4
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.+++++++|.+|..+++++.|++++|+++.+|.||+|+..
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCH
Confidence 6899999999999887778888888888999999999874
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.1e-06 Score=87.80 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEE--CCCe-EEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVIT--DHGE-EIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~--~~g~-~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+.+. ++++++++++.+++.+++++.+.+ .+++ ++.+|.||.|.|..+..
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~v 187 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPL 187 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHH
Confidence 4555666666664 799999999999988777765554 3454 68999999999988765
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-06 Score=89.98 Aligned_cols=99 Identities=23% Similarity=0.412 Sum_probs=69.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+|+ .+ .+ .|
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~------~~---~~---------l~------------------------- 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEM------LD---RI---------LP------------------------- 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc------CC---CC---------CC-------------------------
Confidence 5899999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.++ . .+...+.+.+++.|++++.++ +..++ .+.+.+...+|...++.+|.||+|+|..|+..
T Consensus 208 ---~~~-~-----------~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 208 ---GED-A-----------EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred ---CCC-H-----------HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 000 0 011123345567799999885 44443 45666665555435799999999999999866
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-06 Score=87.98 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
..+.+.+.+.+++.|++++++++|.+|..+++++.+...+++++.+|.||+|++..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 45788888889999999999999999988777665555677789999999999853
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-07 Score=68.22 Aligned_cols=36 Identities=36% Similarity=0.545 Sum_probs=31.4
Q ss_pred EECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 28 IIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
|||||++|+++|+.|++.|.+|+|+|+ ...+||.|.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~---------~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEK---------NDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEES---------SSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEec---------CcccCccee
Confidence 899999999999999999999999996 566777764
|
... |
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-06 Score=85.23 Aligned_cols=58 Identities=26% Similarity=0.341 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeE---EEEECCCe-EEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEG-RGINLHPRTTIKELIKSEEGV---KVITDHGE-EIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~---~v~~~~g~-~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+.+ .|++++.++.+.++..+++.+ .+...+|+ ++.+|.||.|.|.....
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~v 171 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRV 171 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHH
Confidence 455666666655 489999999999998776653 33345664 79999999999987643
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.4e-06 Score=72.61 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=24.8
Q ss_pred EEECCChhHHHHHHHHHhC-----CCcEEEEc
Q 042564 27 FVIGAGSGGVRAARFSANF-----GAKVGICE 53 (498)
Q Consensus 27 vIIGgG~aGl~aA~~l~~~-----g~~V~lve 53 (498)
+|||||++|++++.+|.+. ..+|+|+|
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd 32 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFD 32 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEc
Confidence 5999999999999999986 46999999
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=6e-06 Score=85.33 Aligned_cols=59 Identities=17% Similarity=0.352 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhCC-CEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRG-INLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G~~p~ 299 (498)
...+.+.+.+.+++.| ++++++++|+++..++++ +.+.+ .+|+ ++.++.||+|+|....
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 3467788888888876 899999999999875554 55543 3353 6899999999997653
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.47 E-value=4e-06 Score=85.24 Aligned_cols=55 Identities=24% Similarity=0.252 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEe-CCe-EEEEECCCeEEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKS-EEG-VKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
..+...+.+.+.+.|++++.+++|.++... ++. ..+.+.+| ++.++.||+|+|-.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 345566778888999999999999999754 333 45667777 59999998887754
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-05 Score=80.64 Aligned_cols=59 Identities=12% Similarity=0.286 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 242 DEMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
.++.+.+.+.+.+. +++++.++.+.++..+++++.+.++++ ++.+|+||-|-|..+..-
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKVR 163 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchhH
Confidence 45677777777776 499999999999988877888888776 899999999999887664
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=90.41 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=31.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+||+||||||+|+++|+.|++.|.+|+||||
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr 36 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDK 36 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeC
Confidence 348999999999999999999999999999995
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-06 Score=88.55 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=83.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC--CC--------C---C-CCCHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE--LP--------L---R-GFDDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~--~~--------l---~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
..+++|||||+.|+.+|..+++.|.+|+++.... .. + + ...+++.+.+.+.+++.|+++++++.+.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 3589999999999999999999999999997531 00 0 1 1345788888999999999999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
++...++...+.+.+|+.+.+|.+|+|+|.+|...
T Consensus 291 ~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~ 325 (517)
T PRK15317 291 KLEPAAGLIEVELANGAVLKAKTVILATGARWRNM 325 (517)
T ss_pred EEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCC
Confidence 99887666778888888899999999999987543
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-07 Score=82.73 Aligned_cols=33 Identities=36% Similarity=0.684 Sum_probs=28.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||+||||||+|++||+.|++.|+||+++|+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~ 48 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIER 48 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEES
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEec
Confidence 468999999999999999999999999999995
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-06 Score=88.02 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=82.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC--CCCC-----------C-CCCHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK--ELPL-----------R-GFDDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~--~~~l-----------~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
..+|+|||||+.|+.+|..+++.|.+|+++... ..+. + ...+++.+.+.+.+++.|++++.+++|.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~ 291 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEE
Confidence 468999999999999999999999999998631 1111 1 1345677888888889999999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
++..+++...+.+.+|+.+.+|.+|+|+|..|...
T Consensus 292 ~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~ 326 (515)
T TIGR03140 292 KIETEDGLIVVTLESGEVLKAKSVIVATGARWRKL 326 (515)
T ss_pred EEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCC
Confidence 99877666778888888899999999999987543
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.8e-06 Score=88.54 Aligned_cols=35 Identities=34% Similarity=0.456 Sum_probs=32.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|..++||||||+|.||++||+.+++.|.+|+||||
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK 35 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQ 35 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 44678999999999999999999999999999995
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.8e-06 Score=83.45 Aligned_cols=58 Identities=28% Similarity=0.297 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhCC-CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRG-INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
+..+.+.+.+.+++.| ..+..++.+..+..+.+...|.+.+|+ +.+|.||+|+|...+
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 3577888888899999 556668888888764234677788887 999999999996533
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.9e-06 Score=86.13 Aligned_cols=35 Identities=40% Similarity=0.560 Sum_probs=32.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|+..|||+|||||+.|+++|+.|+++|++|+||||
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk 37 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQ 37 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence 45579999999999999999999999999999996
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.3e-06 Score=76.60 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=33.4
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccC
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 55 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~ 55 (498)
.|.+..|++|||+|.-|+++|++|++.|.+++++|+-
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf 39 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQF 39 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhcCCeEEEEecc
Confidence 4556689999999999999999999999999999953
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-06 Score=90.06 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||+||||||+|+++|+.|++.|.+|+||||
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr 33 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIER 33 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 48999999999999999999999999999995
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-05 Score=84.01 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEEC-CCe--EEEc-CEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITD-HGE--EIVA-DVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~-~g~--~i~~-D~vi~a~G~~p~ 299 (498)
...+...+.+.+++.|++++.++.+.++..+++. ..|... +++ .+.+ +.||+|+|-...
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 5678888889999999999999999998765443 344443 443 4665 689999986544
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-06 Score=90.32 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=31.7
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+..+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er 41 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLER 41 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 3458999999999999999999999999999995
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-06 Score=87.27 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~ 33 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 47999999999999999999999999999995
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.6e-06 Score=76.68 Aligned_cols=97 Identities=27% Similarity=0.385 Sum_probs=68.9
Q ss_pred EEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCCCC--------------CC-------------CC---------------
Q 042564 205 VVLGGGYIAVEFASIWRGMGST-VDLLFRKELPL--------------RG-------------FD--------------- 241 (498)
Q Consensus 205 ~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~~l--------------~~-------------~~--------------- 241 (498)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+. +. +.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 99999885320 00 00
Q ss_pred -HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC--CcCCC
Q 042564 242 -DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR--APNTK 301 (498)
Q Consensus 242 -~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~~~ 301 (498)
+++.+.+++..++.++++++++.|.++..++++..|++.+++++.||.||+|+|. .|...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 1344667778888899999999999999998889999999988999999999997 55443
|
... |
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-05 Score=83.00 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHh-CCCEEEcCccEEEEEEe-CCeEEEE---ECCCe--EEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEG-RGINLHPRTTIKELIKS-EEGVKVI---TDHGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~-~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~ 299 (498)
..+.+.+.+.+.+ .|++++++++|.++..+ ++.+.+. +.+++ ++.+|.||+|+|....
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 4566777777754 59999999999999876 5455554 33442 6899999999998764
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=88.21 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=31.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhC---CCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF---GAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~---g~~V~lvek 54 (498)
.++||+||||||||+++|+.|++. |.+|+|+|+
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 358999999999999999999998 999999995
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.37 E-value=7e-06 Score=84.73 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC-eEEEEE---CCC--eEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEE-GVKVIT---DHG--EEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~v~~---~~g--~~i~~D~vi~a~G~~p~ 299 (498)
...+...+.+.+++.|++++++++|+++..+++ .+.+.+ .+| .++.+|.||+|+|....
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH
Confidence 456788888888899999999999999987544 444543 234 26899999999997653
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.7e-06 Score=85.81 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=32.9
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++.++||||||+|.||++||+.+++.|.+|+|+||
T Consensus 7 ~~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk 42 (584)
T PRK12835 7 NFDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEK 42 (584)
T ss_pred CccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEc
Confidence 345578999999999999999999999999999995
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.3e-06 Score=96.11 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||||||+|.||++||+++++.|.+|+|+||
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK 440 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEK 440 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEc
Confidence 468999999999999999999999999999995
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=81.45 Aligned_cols=60 Identities=12% Similarity=0.251 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCC---CEEEcCccEEEEEEe-------CCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 242 DEMRAVVARNLEGRG---INLHPRTTIKELIKS-------EEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ~~~~~~l~~~l~~~G---v~i~~~~~v~~i~~~-------~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
..+.+.+.+.+.+.+ +++++++++.+++.+ ++.+.+++.+|+++.+|+||-|-|..+..-
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 345566666666654 999999999999642 345788889999999999999999887664
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.7e-06 Score=83.00 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
+.+.+.+.+ ..+++++++|+.|..+..+..+++.+|..+.+|.||+++..
T Consensus 217 l~~al~~~l---~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 217 LIEALAEKL---EAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred HHHHHHHHh---hhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCH
Confidence 344444444 44489999999999887778888999999999999998754
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-06 Score=89.05 Aligned_cols=37 Identities=32% Similarity=0.412 Sum_probs=33.3
Q ss_pred ccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 18 EQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 18 ~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...+..+||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr 74 (514)
T PLN02985 38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIER 74 (514)
T ss_pred cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 3344578999999999999999999999999999995
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=86.11 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHhCC-CcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFG-AKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek 54 (498)
||+||||||+|+++|+.|++.| .+|+|+|+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~ 31 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeC
Confidence 7999999999999999999999 99999995
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=9e-06 Score=84.14 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G 295 (498)
.+.+.+.+.+.+ ++++++++|++|..+++++.|.+.+|+.+.+|.||+|+.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 455555555543 579999999999988888888888888899999999985
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.1e-07 Score=80.18 Aligned_cols=32 Identities=41% Similarity=0.648 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.||+|+||||+||+||++|++.|.||+++|+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~ 61 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFER 61 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEe
Confidence 45999999999999999999999999999995
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-05 Score=81.65 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=78.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------------------------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL------------------------------------------- 237 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l------------------------------------------- 237 (498)
+++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+-
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 5789999999999999999999999999999865320
Q ss_pred --CCC---------------CHHHHHHHHHHHHhCCCE--EEcCccEEEEEEeCCeEEEEECCC--e--EEEcCEEEEec
Q 042564 238 --RGF---------------DDEMRAVVARNLEGRGIN--LHPRTTIKELIKSEEGVKVITDHG--E--EIVADVVLFAT 294 (498)
Q Consensus 238 --~~~---------------~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~v~~~~g--~--~i~~D~vi~a~ 294 (498)
+.. ..++.+.+++..+..|+. ++++++|.++...++...|++.++ . +..+|.||+|+
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAt 169 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCN 169 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEec
Confidence 000 035667777777788888 899999999988777777776532 2 45799999999
Q ss_pred C--CCcCCCC
Q 042564 295 G--RAPNTKR 302 (498)
Q Consensus 295 G--~~p~~~~ 302 (498)
| ..|+...
T Consensus 170 G~~~~P~~P~ 179 (461)
T PLN02172 170 GHYTEPNVAH 179 (461)
T ss_pred cCCCCCcCCC
Confidence 9 4666543
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.2e-06 Score=84.16 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=36.4
Q ss_pred hCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC
Q 042564 254 GRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295 (498)
Q Consensus 254 ~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G 295 (498)
+.|=.+..++.|.+|..++++++|+..+..+..+|.+|+++.
T Consensus 218 ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiP 259 (450)
T COG1231 218 QLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIP 259 (450)
T ss_pred HhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecC
Confidence 346668888999999999999999998856799999999986
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.7e-06 Score=88.85 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr 38 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVER 38 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 358999999999999999999999999999995
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.9e-06 Score=86.37 Aligned_cols=101 Identities=18% Similarity=0.319 Sum_probs=75.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCC------CC----CC-C--HHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELP------LR----GF-D--DEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~------l~----~~-~--~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
++|+|||+|+.|+.+|..|++++ .+|+++++.+.+ ++ .. + .++.....+.+++.|++++.++.|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999999875 489999988753 11 11 1 1223334566778899999999999
Q ss_pred EEEEeCCeEEEEE-CCCeEEE--cCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVIT-DHGEEIV--ADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~-~~g~~i~--~D~vi~a~G~~p~~~~ 302 (498)
+|..+++.+.+.. .+++.+. +|.+|+|||.+|+...
T Consensus 81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 119 (444)
T PRK09564 81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP 119 (444)
T ss_pred EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCC
Confidence 9987766665553 2355666 9999999999987654
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-05 Score=84.07 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEE---CCC--eEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVIT---DHG--EEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~---~~g--~~i~~D~vi~a~G~~p 298 (498)
+..+...+.....++|++++++++|+++..+++++ .+.+ .++ ..+.+|.||.|+|...
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 35566667777888999999999999998776543 3443 233 3689999999999754
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.5e-07 Score=89.23 Aligned_cols=144 Identities=26% Similarity=0.387 Sum_probs=74.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCC-CCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPI-SSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~-~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
...|||+|||||.||+.||..+++.|.+++|+-...... ..++...+||.. .|.+-+.+--.+. ...... ...+
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~--KG~lvrEIDALGG-~Mg~~~--D~~~ 76 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPG--KGHLVREIDALGG-LMGKAA--DKAG 76 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcc--cceeEEeehhccc-hHHHhh--hhcC
Confidence 345999999999999999999999999999998311110 111222233321 0100000000000 011110 0111
Q ss_pred cccc-----cccccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEE--EeCC--EEEEEeCCCceEEEEcCeE
Q 042564 100 WEVH-----EKIDFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKI--VGPN--EVEVTQLDGTKLSYSAKHI 169 (498)
Q Consensus 100 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~--i~~~--~~~v~~~~g~~~~~~~d~l 169 (498)
+++. ..|.+. ..+.+.....+...++..+++ .++.++.+.+.. ++++ -+-|.+.+|. .+.++.|
T Consensus 77 IQ~r~LN~sKGPAVr----a~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~--~~~a~aV 150 (621)
T COG0445 77 IQFRMLNSSKGPAVR----APRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGP--EFHAKAV 150 (621)
T ss_pred CchhhccCCCcchhc----chhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCC--eeecCEE
Confidence 1110 011110 011111222344555555554 488888888663 3333 2556677776 8999999
Q ss_pred EEcCCC
Q 042564 170 LIATGS 175 (498)
Q Consensus 170 iiAtG~ 175 (498)
|++||.
T Consensus 151 VlTTGT 156 (621)
T COG0445 151 VLTTGT 156 (621)
T ss_pred EEeecc
Confidence 999995
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.2e-06 Score=83.77 Aligned_cols=101 Identities=25% Similarity=0.302 Sum_probs=77.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC------CCHHHHHHHHH------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG------FDDEMRAVVAR------------------------ 250 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~------~~~~~~~~l~~------------------------ 250 (498)
+.+|+|||||+.|+.+|..|++.|.+|+++++.+..... +.+...+.+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 468999999999999999999999999999998643321 23332222221
Q ss_pred -------------------HHHh--CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 251 -------------------NLEG--RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 251 -------------------~l~~--~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
.|.+ .++++++++.|++++.+++++.+++++|+++.+|.||.|-|..+..-
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVR 157 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHH
Confidence 1111 13568999999999888778889999999999999999999876553
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.1e-06 Score=84.77 Aligned_cols=98 Identities=24% Similarity=0.310 Sum_probs=73.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC--cEEEEeeCCCCC---CCCCHHHH---------HHHHHHHHhCCCEEEcCccEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGS--TVDLLFRKELPL---RGFDDEMR---------AVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv~~~~~~l---~~~~~~~~---------~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
.++++|||+|+.|+.+|..|++.+. +|+++.+.+... +.+.+.+. -.-.+.+.+.||+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999999876 799998765421 11222111 001244667899999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+..+. ..+.+.+|+++.+|.+|+|||.+|..
T Consensus 83 ~id~~~--~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRDT--RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECCC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 986654 35667788889999999999999865
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.3e-06 Score=84.41 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+||+||||||+|+++|+.|++.|++|+|+|+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~ 33 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEEC
Confidence 47999999999999999999999999999995
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2e-05 Score=79.84 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC---eEEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~ 297 (498)
..+.+.+.+.+++.|++++.++++.+++.+++++.+.+.++ +++.+|+||-|.|..
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCC
Confidence 45777888888888999999999999988888888888754 589999999999964
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-05 Score=82.97 Aligned_cols=97 Identities=22% Similarity=0.390 Sum_probs=66.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+++++ . ..+ .|
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~------~---~~~---------l~------------------------- 194 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDA------A---STI---------LP------------------------- 194 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEec------C---Ccc---------CC-------------------------
Confidence 4799999999999999999999999999993 1 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
..+ .. +.....+.+++.|++++.++ +..++. ..+.+.. +++ ++.+|.+++|+|.+|+..
T Consensus 195 ---~~~-~~-----------~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~--~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 195 ---REE-PS-----------VAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDE--TYRFDALLYATGRKPNTE 256 (438)
T ss_pred ---CCC-HH-----------HHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCe--EEEcCEEEEeeCCCCCcc
Confidence 000 00 11122345667899999875 555543 3455543 343 799999999999999865
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 257 ~ 257 (438)
T PRK07251 257 P 257 (438)
T ss_pred c
Confidence 3
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=80.99 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 47999999999999999999999999999995
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-06 Score=91.31 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
..+.+.+.+.+++.|++|+++++|++|..++++ +++...+|+.+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 568899999999999999999999999987764 7777777777999999998776
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.8e-05 Score=72.25 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=101.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC----------CC----------------------------CCHH
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL----------RG----------------------------FDDE 243 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l----------~~----------------------------~~~~ 243 (498)
-+|+|||+|+.|+-+|..+++.|.+|.++++...+- +. ...+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~e 101 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAE 101 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHH
Confidence 479999999999999999999999999999976431 00 1123
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCC--e-EEEEEC-----------CCeEEEcCEEEEecCCCcCCCCCCcccCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEE--G-VKVITD-----------HGEEIVADVVLFATGRAPNTKRLNLKAVG 309 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~-~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~~l~l~~~g 309 (498)
+.+.+.+...+.|++++.++.+.++..+++ . ..+.+. +...+.++.||.|||........-.+..+
T Consensus 102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~ 181 (254)
T TIGR00292 102 FISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKIV 181 (254)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHcC
Confidence 455566777788999999999999887655 2 334332 12468999999999976533211011111
Q ss_pred ceeCC-----CCCeEcCC-------CCCCCCCCeEEecccCCC----CCChH--HH-HHHHHHHHHHHhC
Q 042564 310 VEVDQ-----TGAVKVDE-------NSRTNVPSIWAVGDVTNR----MNLTP--VA-LMEGTCFAKTVFG 360 (498)
Q Consensus 310 i~~~~-----~g~i~vd~-------~~~t~~~~iya~GD~~~~----~~~~~--~A-~~~g~~aa~~i~~ 360 (498)
+.... -+..+.+. +-+--+|++|++|=.+.. |...+ .+ +.+|+.+|+.++.
T Consensus 182 ~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 182 LEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred cccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 11111 01122221 111247999999966542 22222 33 3578888887763
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-05 Score=83.18 Aligned_cols=100 Identities=26% Similarity=0.413 Sum_probs=67.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||++|+.+|..|++.|.+|+|+|+ .+ .+ .|
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~------~~---~i---------l~------------------------- 217 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEA------AD---RI---------LP------------------------- 217 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEe------cC---cc---------CC-------------------------
Confidence 5899999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe---CCEEE-EEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG---PNEVE-VTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~---~~~~~-v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
..+. .+...+.+.+++.||+++.++ +..++ .+.+. +...+|+..++.+|.+++|+|.+|+
T Consensus 218 ---~~~~------------~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 218 ---TEDA------------ELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred ---cCCH------------HHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 0010 011122344567799999886 54554 33333 3344565457999999999999988
Q ss_pred CCC
Q 042564 179 RAP 181 (498)
Q Consensus 179 ~p~ 181 (498)
...
T Consensus 283 ~~~ 285 (472)
T PRK05976 283 TEG 285 (472)
T ss_pred CCC
Confidence 653
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-05 Score=84.79 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeC--Ce-EEEEE---CCCe--EEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSE--EG-VKVIT---DHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~-~~v~~---~~g~--~i~~D~vi~a~G~~p 298 (498)
+..+...+.+..++.|++++.+++|.++..++ +. ..|.+ .+++ .+.+|.||.|+|...
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 56788888888999999999999999997653 33 33333 2343 589999999999654
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.9e-05 Score=71.14 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=99.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC----------C----------------------------CCHH
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR----------G----------------------------FDDE 243 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~----------~----------------------------~~~~ 243 (498)
-+|+|||+|+.|+-+|..+++.|.+|.++++...+-. . ...+
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~ 105 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVE 105 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHH
Confidence 4799999999999999999999999999998754310 0 1124
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCC-e-EEEEEC-----------CCeEEEcCEEEEecCCCcCCCCCCccc---
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEE-G-VKVITD-----------HGEEIVADVVLFATGRAPNTKRLNLKA--- 307 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~-~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~~l~l~~--- 307 (498)
+...+.+...+.|++++.++.+.++..+++ . ..+... +...+.++.||.|+|........-.+.
T Consensus 106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~~ 185 (257)
T PRK04176 106 AAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGPE 185 (257)
T ss_pred HHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcCC
Confidence 455567777888999999999999876554 2 223221 224789999999999654432100000
Q ss_pred CCceeCCCCCe--------EcCCCCCCCCCCeEEecccCCC----CCChH--HH-HHHHHHHHHHHhC
Q 042564 308 VGVEVDQTGAV--------KVDENSRTNVPSIWAVGDVTNR----MNLTP--VA-LMEGTCFAKTVFG 360 (498)
Q Consensus 308 ~gi~~~~~g~i--------~vd~~~~t~~~~iya~GD~~~~----~~~~~--~A-~~~g~~aa~~i~~ 360 (498)
.+..+...... .|+..-+ -+|++|++|=.+.. |...+ .+ +.+|+.+|+.++.
T Consensus 186 ~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 186 LGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred cccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHH
Confidence 01111101112 2222222 47999999976642 22222 23 4588888888764
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.8e-05 Score=76.88 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHh-CC-CEEEcCccEEEEEEeCCeEEEEECCC-----eEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEG-RG-INLHPRTTIKELIKSEEGVKVITDHG-----EEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~-~G-v~i~~~~~v~~i~~~~~~~~v~~~~g-----~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+.+ .| ..++++++++++..+++++.+.+.++ +++.+|+||-|.|..+..
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHHH
Confidence 455556666544 35 57999999999987766655555432 479999999999987654
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=80.48 Aligned_cols=30 Identities=37% Similarity=0.578 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
||+||||||+|+++|+.|++.|++|+|+|+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 799999999999999999999999999995
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.5e-06 Score=82.22 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHHhC--CCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANF--GAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek 54 (498)
||+|||||+||+++|..|++. |++|+|+|+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~ 32 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEA 32 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 899999999999999999986 999999994
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00012 Score=77.68 Aligned_cols=56 Identities=16% Similarity=0.320 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
++.+.|.+.+... .+++++.|.+++.+++.+.+++.+|+++.+|.||.|-|.+...
T Consensus 195 ~L~~~L~~alg~~--~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 195 TLQQILARAVGED--VIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred HHHHHHHhhCCCC--EEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHH
Confidence 3444444433221 3678889999988888888999999889999999999987654
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.1e-06 Score=89.22 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEEE--CCCe--EEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVIT--DHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~--~~g~--~i~~D~vi~a~G~~ 297 (498)
..+.+.+.+.+++.|++++++++|++|..++++ + .++. .+|+ .+.+|.||+++...
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 457788888898899999999999999887665 2 2332 2353 58899999998753
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.1e-05 Score=74.84 Aligned_cols=97 Identities=25% Similarity=0.275 Sum_probs=77.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC---------------------------------------C----
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR---------------------------------------G---- 239 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~---------------------------------------~---- 239 (498)
+|+|||+|+.|+-+|..|++.|.+|+++++.+..-. .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 589999999999999999999999999998853210 0
Q ss_pred ------C-CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECC-CeEEEcCEEEEecCCCcC
Q 042564 240 ------F-DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH-GEEIVADVVLFATGRAPN 299 (498)
Q Consensus 240 ------~-~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~ 299 (498)
+ -.++.+.+.+.+++.|++++.++++.++..+++.+.+.+.+ +.++.+|.||.|+|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchH
Confidence 1 12355667777888899999999999998777776666554 457999999999998754
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.1e-05 Score=80.60 Aligned_cols=184 Identities=19% Similarity=0.202 Sum_probs=116.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|.|||+|+.|+-+|..|.+.|..|++.+|++++ .|. +|+.+.++-.+.|.+.||++.+|++|-.-
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~--- 1861 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH--- 1861 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc---
Confidence 579999999999999999999999999999999975 233 78888888889999999999999776321
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCccc---CCceeC-----CCCCeEcCC-----CCCCCCCCeEEecccC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKA---VGVEVD-----QTGAVKVDE-----NSRTNVPSIWAVGDVT 338 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~---~gi~~~-----~~g~i~vd~-----~~~t~~~~iya~GD~~ 338 (498)
+. -|+-.-+-|.||+|+|..-..++- ... .|+.+. .+-.-..|. +.....+.|..+|---
T Consensus 1862 -----vs-~d~l~~~~daiv~a~gst~prdlp-v~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggd 1934 (2142)
T KOG0399|consen 1862 -----VS-LDELKKENDAIVLATGSTTPRDLP-VPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGD 1934 (2142)
T ss_pred -----cc-HHHHhhccCeEEEEeCCCCCcCCC-CCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCC
Confidence 21 122234579999999987666532 111 122110 000111222 2223445677776433
Q ss_pred CCCCChHHHHHHHHHHHHHH-hCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCC
Q 042564 339 NRMNLTPVALMEGTCFAKTV-FGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKG 397 (498)
Q Consensus 339 ~~~~~~~~A~~~g~~aa~~i-~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~ 397 (498)
.+........+.|-.-..|+ +-.+++.......||..| |.+-.|-+.-+|+++. |+
T Consensus 1935 tg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqw--prvfrvdygh~e~~~~-~g 1991 (2142)
T KOG0399|consen 1935 TGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQW--PRVFRVDYGHAEAKEH-YG 1991 (2142)
T ss_pred ccccccccchhhccceecceeecCCCCcccCCCCCCccC--ceEEEeecchHHHHHH-hC
Confidence 33333334444543333332 112222333345788777 7788899999999886 54
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-05 Score=79.51 Aligned_cols=100 Identities=16% Similarity=0.255 Sum_probs=79.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC---CC---CC----------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL---RG---FD---------------------------------- 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l---~~---~~---------------------------------- 241 (498)
..|+|||+|+.|+-+|..|.+.|.+|+++++.+... +. +.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 479999999999999999999999999999865210 00 01
Q ss_pred ----------------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 242 ----------------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ----------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
..+.+.+.+.+++.|++++++++++++..+++++.+++.+|+++.+|.||.|.|.++...
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 112233456667779999999999999988888888888888899999999999988653
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.9e-06 Score=84.09 Aligned_cols=42 Identities=31% Similarity=0.578 Sum_probs=37.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR 74 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~ 74 (498)
+|++|||||++|+++|.+|++.|.+|+|+|+ ...+||.|.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk---------~~~iGG~~~~~ 43 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEK---------RNHIGGNCYDE 43 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEec---------CCCCCCceeee
Confidence 7999999999999999999999999999995 56789988653
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.8e-05 Score=59.14 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+++|||||+.|+-+|..|++.|.+|+|+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEec
Confidence 489999999999999999999999999993
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.2e-05 Score=80.07 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=74.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC--C---------CHHHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG--F---------DDEMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~--~---------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
.++|+|||||+.|+.+|..|...+.+|+++++.+..... + ..++...+.+.++..+++++.+ +|.+|+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~Id 88 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDVD 88 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEEE
Confidence 468999999999999999887667899999987753211 1 1223334556666778888764 899998
Q ss_pred EeCCeEEEEE--------CCCeEEEcCEEEEecCCCcCCCC
Q 042564 270 KSEEGVKVIT--------DHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 270 ~~~~~~~v~~--------~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+++.+.+.. .+|+++++|.+|+|+|..|+...
T Consensus 89 ~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ 129 (424)
T PTZ00318 89 FEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN 129 (424)
T ss_pred cCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCC
Confidence 7766555522 45668999999999999987653
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.4e-05 Score=83.57 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=32.1
Q ss_pred CCCCccEEEECCChhHHHHHHHHHh-CCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek 54 (498)
|..++||+||||||+||++|+.|++ .|.+|+|||+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~ 64 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVER 64 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEc
Confidence 4557899999999999999999999 5999999994
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.2e-05 Score=86.12 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=75.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC----CCcEEEEeeCCCCC------CC-C----CHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM----GSTVDLLFRKELPL------RG-F----DDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~----g~~V~lv~~~~~~l------~~-~----~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
++|+|||+|..|+.+|..|.+. +.+|+++.+.+.+. +. + ..++.....+.+++.||+++.++.|.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 5899999999999999999765 46899998877632 11 1 11222223456778899999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+..+. ..|.+.+|+.+.+|.+|+|||.+|....
T Consensus 84 ~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p~~p~ 117 (847)
T PRK14989 84 TINRQE--KVIHSSAGRTVFYDKLIMATGSYPWIPP 117 (847)
T ss_pred EEeCCC--cEEEECCCcEEECCEEEECCCCCcCCCC
Confidence 886543 4566788888999999999999987654
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.9e-05 Score=78.99 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=73.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHC---CCcEEEEeeCCCCCC--CC---------CHHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGM---GSTVDLLFRKELPLR--GF---------DDEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~---g~~V~lv~~~~~~l~--~~---------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
+|+|||||+.|+.+|..+.+. +.+|+++++.+...- .+ ..++...+.+.+++.|++++.+ .|..|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 489999999999999998643 578999998775311 11 1223334566677789999876 78888
Q ss_pred EEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 269 IKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 269 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
..+++ .|.+.+|+++.+|.+|+|||..|....
T Consensus 80 d~~~~--~V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 80 DPDRR--KVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ecccC--EEEECCCCcccccEEEEccCCCCCCCC
Confidence 76554 577788888999999999999998754
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.5e-05 Score=72.94 Aligned_cols=101 Identities=15% Similarity=0.108 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC---C--------CCC-----CCHHHHHHHHHHHHhCCCEEEcCc
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL---P--------LRG-----FDDEMRAVVARNLEGRGINLHPRT 263 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~---~--------l~~-----~~~~~~~~l~~~l~~~Gv~i~~~~ 263 (498)
..++|+|||+|+.|+.+|..+.+.|.++.+++..+. + ++. ..+.+.+.+.+.....+++++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 357899999999999999999999999988864321 0 111 12345667777777778887776
Q ss_pred cEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 264 TIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 264 ~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+..++..++.+.+..+++ .+.+|.||+|+|..|....
T Consensus 84 ~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~~~~~ 121 (321)
T PRK10262 84 HINKVDLQNRPFRLTGDSG-EYTCDALIIATGASARYLG 121 (321)
T ss_pred EEEEEEecCCeEEEEecCC-EEEECEEEECCCCCCCCCC
Confidence 5667766655556655444 6899999999999987543
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.9e-06 Score=86.12 Aligned_cols=41 Identities=39% Similarity=0.492 Sum_probs=36.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTC 71 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~ 71 (498)
..++|||||||+|||+||++|.+.|.+|+|+|. +..+||..
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEA---------RdRvGGRI 54 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEA---------RDRVGGRI 54 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEec---------cCCcCcee
Confidence 357999999999999999999999999999995 67778774
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3e-05 Score=79.48 Aligned_cols=101 Identities=14% Similarity=0.197 Sum_probs=71.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCC--C-CCCHHH-------HHHH---HHHH-HhCCCEEEcCccE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPL--R-GFDDEM-------RAVV---ARNL-EGRGINLHPRTTI 265 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l--~-~~~~~~-------~~~l---~~~l-~~~Gv~i~~~~~v 265 (498)
++|+|||+|+.|+.+|..|+++ +.+|+++++.+.+. + .+..-+ .+.+ .+.+ ++.|++++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999887 56899999986421 1 011100 0111 1233 5579999999999
Q ss_pred EEEEEeCCeEEEEECC-Ce--EEEcCEEEEecCCCcCCCC
Q 042564 266 KELIKSEEGVKVITDH-GE--EIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 266 ~~i~~~~~~~~v~~~~-g~--~i~~D~vi~a~G~~p~~~~ 302 (498)
.+|..+++.+.+...+ ++ ++.+|.+|+|||.+|+...
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~ 121 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG 121 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCC
Confidence 9998777666655432 22 4689999999999997653
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.1e-05 Score=78.08 Aligned_cols=97 Identities=24% Similarity=0.363 Sum_probs=76.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-CC-C----------------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RG-F---------------------------------------- 240 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-~~-~---------------------------------------- 240 (498)
+|+|||+|+.|+-+|..+.+.|.+|.++++.+... +. .
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y~ 109 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPYG 109 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcce
Confidence 79999999999999999999999999999865211 10 0
Q ss_pred ---CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 241 ---DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 241 ---~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..++.+.+.+.+.+.|++++ ...|.++..+++...|++++|+++.+|.||.|+|..+..
T Consensus 110 ~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 110 RVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred eEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence 01223445566667899997 468999988877788889999899999999999987653
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.6e-05 Score=77.54 Aligned_cols=103 Identities=19% Similarity=0.114 Sum_probs=71.0
Q ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC---------CCHHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG---------FDDEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 198 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~---------~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
...+++|+|||+|+.|+++|..|++.|.+|+++++.+.+... .+.+......+.+.+.|++++.++.+..+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 345789999999999999999999999999999998765321 23333444556677779999999887654
Q ss_pred EE----eCCeEEEEE--CCCeEEEcCEEEEecCCC-cCC
Q 042564 269 IK----SEEGVKVIT--DHGEEIVADVVLFATGRA-PNT 300 (498)
Q Consensus 269 ~~----~~~~~~v~~--~~g~~i~~D~vi~a~G~~-p~~ 300 (498)
.. +++...... .++..+.+|.||+|+|.. |..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~ 133 (352)
T PRK12770 95 EPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRK 133 (352)
T ss_pred cccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCc
Confidence 32 111111111 112247899999999984 543
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.4e-05 Score=77.42 Aligned_cols=100 Identities=22% Similarity=0.279 Sum_probs=79.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCCCCC-----------CCHHHHHHHHHHHHhCC-CEEEcCccEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELPLRG-----------FDDEMRAVVARNLEGRG-INLHPRTTIK 266 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~l~~-----------~~~~~~~~l~~~l~~~G-v~i~~~~~v~ 266 (498)
.++++|+|||+-|+..+..|.+.- .+|++|++.+..+-. -+.++...+.+.++..+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 478999999999999999999874 889999998864311 13455566778888666 888876 899
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRL 303 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l 303 (498)
+|+.++. .|++.+++.+++|.+|+|+|..++....
T Consensus 82 ~ID~~~k--~V~~~~~~~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 82 DIDRDAK--KVTLADLGEISYDYLVVALGSETNYFGI 116 (405)
T ss_pred EEcccCC--EEEeCCCccccccEEEEecCCcCCcCCC
Confidence 9976554 5777777789999999999999988654
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.5e-05 Score=79.49 Aligned_cols=99 Identities=24% Similarity=0.409 Sum_probs=66.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+|+++ . ..+ .|
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~------~---~~l---------l~------------------------- 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEM------A---PQL---------LP------------------------- 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEec------C---CCc---------Cc-------------------------
Confidence 5799999999999999999999999999993 1 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
..+. ++...+.+.+++.||+++.++ +..++.. .+.+.. +|+..++.+|.|++|+|.+|+..
T Consensus 208 ---~~d~------------e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 208 ---GEDE------------DIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred ---cccH------------HHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCCccCCC
Confidence 0010 111223345667899999886 5555432 344433 34335799999999999998765
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 272 ~ 272 (458)
T PRK06912 272 Q 272 (458)
T ss_pred C
Confidence 3
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.3e-05 Score=79.84 Aligned_cols=60 Identities=27% Similarity=0.265 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECC---Ce--EEEcCEEEEecCCCcC
Q 042564 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH---GE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 240 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~i~~D~vi~a~G~~p~ 299 (498)
.|..+.-.......++|-++...+.|+.+..+++...|...| |+ .+.++.||.|+|-...
T Consensus 162 ddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 162 DDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred chHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 355677777777888999999999999999888744555443 33 5889999999996543
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.7e-05 Score=77.99 Aligned_cols=100 Identities=25% Similarity=0.301 Sum_probs=69.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-.|..+++.|.+|+|+|+ . .. +
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~------~---~~-----i------------------------------- 208 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVER------G---DR-----I------------------------------- 208 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEec------C---CC-----C-------------------------------
Confidence 4799999999999999999999999999993 1 11 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.+.+| .++...+...+++.++.+..+. +..+.. +.+.+...+|....+++|++++|+|-+|+..
T Consensus 209 -Lp~~D------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 209 -LPGED------------PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred -CCcCC------------HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 01111 1122334455666788888876 333322 2266766665433788999999999999877
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 276 ~ 276 (454)
T COG1249 276 G 276 (454)
T ss_pred C
Confidence 4
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.1e-05 Score=86.17 Aligned_cols=97 Identities=21% Similarity=0.270 Sum_probs=74.3
Q ss_pred EEEEcCCHHHHHHHHHHHHCC---CcEEEEeeCCCCC-CC--CC---------HHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 204 AVVLGGGYIAVEFASIWRGMG---STVDLLFRKELPL-RG--FD---------DEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 204 v~ViG~G~~g~e~a~~l~~~g---~~V~lv~~~~~~l-~~--~~---------~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
|+|||+|+.|+.+|..+++++ .+|+++++.+.+. .. +. +++.....+.+++.||++++++.|.+|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999988764 5899999877631 10 11 112222356678899999999999999
Q ss_pred EEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 269 IKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 269 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
..+. ..|++.+|+++.+|.+|+|||..|....
T Consensus 81 d~~~--k~V~~~~g~~~~yD~LVlATGs~p~~p~ 112 (785)
T TIGR02374 81 DTDQ--KQVITDAGRTLSYDKLILATGSYPFILP 112 (785)
T ss_pred ECCC--CEEEECCCcEeeCCEEEECCCCCcCCCC
Confidence 7554 3577788888999999999999987654
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.3e-05 Score=86.95 Aligned_cols=93 Identities=12% Similarity=0.055 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIK 270 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 270 (498)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ +|. ++.++.+...+.+++.||++++++.+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 3689999999999999999999999999999987643 222 567787777888899999999986542
Q ss_pred eCCeEEEEECCCeEEEcCEEEEecCCC-cCC
Q 042564 271 SEEGVKVITDHGEEIVADVVLFATGRA-PNT 300 (498)
Q Consensus 271 ~~~~~~v~~~~g~~i~~D~vi~a~G~~-p~~ 300 (498)
..+++++.....+|.|++|||.. |..
T Consensus 381 ----~dit~~~l~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 381 ----KTATLEDLKAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred ----cEEeHHHhccccCCEEEEeCCCCCCCc
Confidence 12455555456799999999985 543
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-05 Score=72.30 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-----EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEG-----VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQ 314 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-----~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~ 314 (498)
+...+-+.++..|-.+.+|-+++.+....+. +.|.-..++++.+..++.|+|.....- .+.+|.++++
T Consensus 198 v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~---aa~sgc~~dP 270 (453)
T KOG2665|consen 198 VTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRC---AALSGCELDP 270 (453)
T ss_pred HHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHH---HHHhCCCCCC
Confidence 4445556688889999999999998765543 333334467899999999999876543 2344555554
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=84.06 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr 64 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcc
Confidence 468999999999999999999999999999995
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.7e-05 Score=77.99 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=76.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC--------C---CC----CCHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP--------L---RG----FDDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~--------l---~~----~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
..|+|||||+.|+.+|..+++.|.+|+++++...- . +. ..+++.+.+.+.+++.|++++ +..|.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 47999999999999999999999999999975420 0 11 124567777788888899986 56788
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+..+++...+.+.++ .+.+|.+|+|||.+|....
T Consensus 84 ~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ 118 (555)
T TIGR03143 84 DVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLG 118 (555)
T ss_pred EEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCC
Confidence 8876655556666666 5889999999999987643
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.5e-05 Score=78.06 Aligned_cols=98 Identities=23% Similarity=0.293 Sum_probs=66.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+|+|||||+.|+.+|..|++.|.+|+++++ .+ .+.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~------~~---~~~----------------------------------- 173 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHR------SE---RIL----------------------------------- 173 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEC------Cc---ccC-----------------------------------
Confidence 5799999999999999999999999999993 11 100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
...++ . .+...+...+++.||+++.+. +..++.+...+...+|+ ++.+|.||+|+|.+|..+
T Consensus 174 -~~~~~-~-----------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 174 -NKLFD-E-----------EMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGG--VYQADMVILATGIKPNSE 236 (427)
T ss_pred -ccccC-H-----------HHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCC--EEEeCEEEECCCccCCHH
Confidence 00000 0 011223344567799999875 55565544333445655 799999999999988754
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.2e-05 Score=77.20 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHhCCcEEEEeEEEEE--eCC-E-EEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 123 RLNGIYKRLLSNAGVKLYEGEGKIV--GPN-E-VEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 123 ~~~~~~~~~~~~~gv~~~~~~~~~i--~~~-~-~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
.+...+.+...+.|++++.++++.+ +++ . ..|.+.+|+ ++++|.+|=|||....+
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~--~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGR--TIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSE--EEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCC--EEEEeEEEECCCccchh
Confidence 4455566666778999999986543 333 3 356677765 89999999999976544
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.6e-06 Score=76.41 Aligned_cols=43 Identities=33% Similarity=0.517 Sum_probs=39.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR 74 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~ 74 (498)
++|++|||+|.+|+..|..|++.|++|+|||| +..+||.|.-.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvek---------R~HIGGNaYde 43 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEK---------RNHIGGNAYDE 43 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEec---------cccCCCccccc
Confidence 48999999999999999999999999999997 88899999643
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-05 Score=80.96 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=70.5
Q ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------CC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------RG--FDDEMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 199 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
..+++|+|||+|+.|+++|..|.+.|.+|+++++.+.+. +. .+.++.....+.+++.||++++++.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-- 215 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-- 215 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--
Confidence 346899999999999999999999999999999877542 22 4667778888888999999999876521
Q ss_pred EeCCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 270 KSEEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 270 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
.+.+.+. .+.+|.||+|||..
T Consensus 216 ------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 ------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred ------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222222 26799999999986
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.6e-05 Score=78.81 Aligned_cols=100 Identities=33% Similarity=0.437 Sum_probs=68.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+++++ .+ .+ .|
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~------~~---~~---------l~------------------------- 209 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEA------LP---RI---------LP------------------------- 209 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEc------CC---Cc---------CC-------------------------
Confidence 5799999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCC-CceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLD-GTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~-g~~~~~~~d~liiAtG~~p~~ 179 (498)
.++. .+...+.+.+++.|++++.+. +..++ .+.+.+...+ ++..++.+|.+|+|+|.+|+.
T Consensus 210 ---~~~~------------~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 210 ---GEDK------------EISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred ---cCCH------------HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 0110 111223345667799999885 55554 3355565444 333579999999999999876
Q ss_pred CC
Q 042564 180 AP 181 (498)
Q Consensus 180 p~ 181 (498)
..
T Consensus 275 ~~ 276 (462)
T PRK06416 275 EN 276 (462)
T ss_pred CC
Confidence 54
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.9e-06 Score=79.00 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=36.8
Q ss_pred CCccEEEECCChhHHHHHHHHHh------CCCcEEEEccCCCCCCCCcCCCccccccccCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN------FGAKVGICELPFHPISSEVIGGVGGTCVIRGC 76 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~------~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~ 76 (498)
..+||+|||||||||+||++|.+ ...+|+|+|| ...+||..+--.|
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEK---------aa~~GghtlSGav 126 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEK---------AAEVGGHTLSGAV 126 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEee---------ccccCCceeccee
Confidence 36899999999999999999987 3569999996 5667777543333
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.5e-05 Score=75.53 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=71.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCCC---CCCC---------HHHHH-HHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELPL---RGFD---------DEMRA-VVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~l---~~~~---------~~~~~-~l~~~l~~~Gv~i~~~~~v~ 266 (498)
++++|||+|+.|+.+|..+++.+ .+|+++.+.+... +.+. .++.. ...+.+++.|++++.++.|.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 58999999999999999998764 5799998766421 1111 12221 13345677899999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
++..+.. .+.+ +++.+.+|.+|+|||.+|....
T Consensus 83 ~id~~~~--~v~~-~~~~~~yd~LVlATG~~~~~p~ 115 (377)
T PRK04965 83 DIDAEAQ--VVKS-QGNQWQYDKLVLATGASAFVPP 115 (377)
T ss_pred EEECCCC--EEEE-CCeEEeCCEEEECCCCCCCCCC
Confidence 9976544 3444 5668999999999999987654
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.1e-06 Score=74.07 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTC 71 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~ 71 (498)
.+|+|||+|+||++||..|+..|.+|+|+|| ..++||..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eK---------g~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEK---------GRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEc---------CCCcccch
Confidence 3799999999999999999999999999997 56677764
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.4e-05 Score=77.83 Aligned_cols=99 Identities=25% Similarity=0.354 Sum_probs=66.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+|+|+ . ..+ .|
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~------~---~~~---------l~------------------------- 209 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEF------L---DRA---------LP------------------------- 209 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEec------C---CCc---------CC-------------------------
Confidence 4799999999999999999999999999993 1 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEe--CCCceEEEEcCeEEEcCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQ--LDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~--~~g~~~~~~~d~liiAtG~~p~ 178 (498)
..+. + +...+.+.+++.||+++.++ +..++. ..+.+.. .+|+..++++|.|++|+|.+|+
T Consensus 210 ---~~d~-~-----------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 210 ---NEDA-E-----------VSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred ---ccCH-H-----------HHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 1110 0 11223345667899999885 444532 2344433 2554457999999999999887
Q ss_pred CC
Q 042564 179 RA 180 (498)
Q Consensus 179 ~p 180 (498)
..
T Consensus 275 ~~ 276 (466)
T PRK07818 275 VE 276 (466)
T ss_pred CC
Confidence 65
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.94 E-value=3e-05 Score=79.65 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=70.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CC--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LR--GFDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++ .++.++.....+.+++.||+++++..+..
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---- 208 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK---- 208 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC----
Confidence 479999999999999999999999999999987644 12 25667777777888899999999975411
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCC-CcCCC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGR-APNTK 301 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~~ 301 (498)
.+.+.+. ...+|.||+|||. .|...
T Consensus 209 ----~v~~~~~-~~~yd~viiAtGa~~p~~~ 234 (449)
T TIGR01316 209 ----TATLEEL-FSQYDAVFIGTGAGLPKLM 234 (449)
T ss_pred ----cCCHHHH-HhhCCEEEEeCCCCCCCcC
Confidence 1333322 2468999999997 56543
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.3e-05 Score=72.85 Aligned_cols=100 Identities=22% Similarity=0.314 Sum_probs=72.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC---CCCCH-----------HHH--H--HHHHHHHhCCCEEEcCcc
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL---RGFDD-----------EMR--A--VVARNLEGRGINLHPRTT 264 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l---~~~~~-----------~~~--~--~l~~~l~~~Gv~i~~~~~ 264 (498)
+|+|||+|+.|+.+|..|.+.+.+|+++++.+... ..... ... + .+.+.+...+++++.++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 58999999999999999999999999997655210 00000 011 0 333445678999999999
Q ss_pred EEEEEEeCCe-----EEE---EECCCeEEEcCEEEEecCCCcCCCC
Q 042564 265 IKELIKSEEG-----VKV---ITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 265 v~~i~~~~~~-----~~v---~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+.++...... ..+ ...++.++.+|.+|+|+|..|+...
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 126 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN 126 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence 9999877663 122 2345668999999999999887654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.3e-05 Score=76.94 Aligned_cols=97 Identities=24% Similarity=0.259 Sum_probs=67.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+|+++ . ..+.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~------~---~~~l----------------------------------- 211 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINT------R---DRLL----------------------------------- 211 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEec------C---CCcC-----------------------------------
Confidence 5799999999999999999999999999993 1 1100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+.++. .+...+.+.+++.|++++.++ +..++ .+.+.+...+|+ ++++|.+++|+|.+|+..
T Consensus 212 --~~~d~------------~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 212 --SFLDD------------EISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGK--KIKADCLLYANGRTGNTD 275 (461)
T ss_pred --CcCCH------------HHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCC--EEEeCEEEEeecCCcccc
Confidence 00110 011223344566799999875 44443 455666666664 799999999999998765
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.1e-05 Score=84.16 Aligned_cols=33 Identities=36% Similarity=0.547 Sum_probs=30.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.++||||||+| +|++||++|++.|.+|+||||
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk 37 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEA 37 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEec
Confidence 347899999999 999999999999999999995
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00058 Score=65.81 Aligned_cols=99 Identities=22% Similarity=0.263 Sum_probs=75.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCCC-----------CCC-----CCHHHHHHHHHHHHhCCCEEEcCcc
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKELP-----------LRG-----FDDEMRAVVARNLEGRGINLHPRTT 264 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~~-----------l~~-----~~~~~~~~l~~~l~~~Gv~i~~~~~ 264 (498)
-.|+|||+|+.|+-.|-.+.+.+.+ +.+++....- .|. ..+++.+.+.+.....|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 3799999999999999999999988 5555543110 121 3456777777777788999887 57
Q ss_pred EEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 265 IKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 265 v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
|.+++..++...|.+.+++ +.++.||+|+|..+....
T Consensus 83 v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 83 VEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLG 119 (305)
T ss_pred EEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCC
Confidence 7777765556788888887 999999999998776654
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.4e-06 Score=84.61 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..+.+.+.+.+++.|++++++++|.+|..+++. ..|.+.+|+++.+|.||+++|.....
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~ 288 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTF 288 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence 568888999999999999999999999876554 66778888889999999999865433
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.3e-05 Score=82.63 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=68.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ .|. ++.++...-.+.+++.||++++++.+ .+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di--- 614 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL--- 614 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE---
Confidence 579999999999999999999999999999987643 222 34455555567778889999999766 22
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.....+|.||+|||.++..
T Consensus 615 ------~le~L~~~gYDaVILATGA~~~~ 637 (1019)
T PRK09853 615 ------TVEQLKNEGYDYVVVAIGADKNG 637 (1019)
T ss_pred ------EhhhheeccCCEEEECcCCCCCC
Confidence 22233345689999999998643
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.8e-06 Score=84.52 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCC-----eEEEcCEEEEecCCC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHG-----EEIVADVVLFATGRA 297 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g-----~~i~~D~vi~a~G~~ 297 (498)
-..+.+.+.+.+++.|++|+++++|++|..+++. ..+.+.++ +++.+|.||+++...
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 4568888999999999999999999999877664 34444443 578999999998753
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.4e-05 Score=76.09 Aligned_cols=97 Identities=20% Similarity=0.304 Sum_probs=67.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+++++ +. .+ .
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~----------~~----~~----l-------------------------- 202 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYR----------GE----LI----L-------------------------- 202 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEe----------CC----CC----C--------------------------
Confidence 4799999999999999999999999999993 11 00 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+.++. .+...+...+++.|++++.++ +..++ ++.+.+...+++ .+.+|.+++|+|..|+..
T Consensus 203 --~~~d~------------~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 203 --RGFDD------------DMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGE--EIVADVVLFATGRSPNTK 266 (446)
T ss_pred --cccCH------------HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCc--EeecCEEEEeeCCCcCCC
Confidence 00110 011123344667899999875 44553 345666665654 799999999999988764
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00013 Score=73.63 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=76.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC---------------------CC--------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR---------------------GF-------------------- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~---------------------~~-------------------- 240 (498)
-+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.. .+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4799999999999999999999999999998754311 00
Q ss_pred ------------------------CHHHHHHHHHHHHhCC-CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC
Q 042564 241 ------------------------DDEMRAVVARNLEGRG-INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295 (498)
Q Consensus 241 ------------------------~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G 295 (498)
...+.+.+.+.+++.| ++++ +..+.++..+++.+.+++.+|+++.+|.||.|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG 164 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADG 164 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCC
Confidence 0122334556666776 9988 8899999877777888888888899999999999
Q ss_pred CCcCC
Q 042564 296 RAPNT 300 (498)
Q Consensus 296 ~~p~~ 300 (498)
..+..
T Consensus 165 ~~S~v 169 (388)
T PRK07608 165 AHSWV 169 (388)
T ss_pred CCchH
Confidence 87654
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00015 Score=72.85 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=73.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-----CCHHH---------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-----FDDEM--------------------------------- 244 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-----~~~~~--------------------------------- 244 (498)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+-.. +.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6999999999999999999999999999987642100 00000
Q ss_pred ---------------HHHHHHHHHhC--CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 245 ---------------RAVVARNLEGR--GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 245 ---------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
...+.+.|.+. +.++++++++++++.+++++.+++++|+++.+|.||-|.|.++..-
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHH
Confidence 01122333222 4578999999999877777888899999999999999999776553
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=73.29 Aligned_cols=97 Identities=20% Similarity=0.377 Sum_probs=75.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCCCCC---------CC-------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELPLRG---------FD------------------------------- 241 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~l~~---------~~------------------------------- 241 (498)
.|+|||+|+.|+-+|..|.+.| .+|+++++.+.+-+. +.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 4899999999999999999999 999999986421100 00
Q ss_pred ------------------------HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 242 ------------------------DEMRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 242 ------------------------~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.++.+.+.+.+.+ .|+++++++.|+++..+++++.+.+++|+++.+|.||.|.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGA 160 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCC
Confidence 1122334455555 499999999999998877788888888888999999999998
Q ss_pred CcC
Q 042564 297 APN 299 (498)
Q Consensus 297 ~p~ 299 (498)
...
T Consensus 161 ~S~ 163 (382)
T TIGR01984 161 NSK 163 (382)
T ss_pred ChH
Confidence 754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.8e-05 Score=78.26 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHHhCC-CcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFG-AKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek 54 (498)
+|+|||||++|+++|..|++.| .+|+|+|+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er 32 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEA 32 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEec
Confidence 6999999999999999999988 59999995
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00017 Score=73.12 Aligned_cols=31 Identities=35% Similarity=0.275 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|+||||||+|+++|+.|++.|++|+|+|+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 5799999999999999999999999999995
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=76.01 Aligned_cols=99 Identities=18% Similarity=0.310 Sum_probs=76.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC------------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG------------------------------------------ 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~------------------------------------------ 239 (498)
-.|+|||+|+.|+-+|..|.+.|.+|+++++.+...+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999986521000
Q ss_pred -C--------------CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC--CC-eEEEcCEEEEecCCCcCC
Q 042564 240 -F--------------DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD--HG-EEIVADVVLFATGRAPNT 300 (498)
Q Consensus 240 -~--------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~--~g-~~i~~D~vi~a~G~~p~~ 300 (498)
+ -..+.+.+.+.+++.|+++++++++.++..+++++.+.+. +| +++.+|.||.|.|.++..
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 0 0123444566677789999999999999887777666653 45 479999999999998754
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00017 Score=74.85 Aligned_cols=99 Identities=18% Similarity=0.293 Sum_probs=77.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC----------------------------------------CC-
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR----------------------------------------GF- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~----------------------------------------~~- 240 (498)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+.. .+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4799999999999999999999999999988753100 00
Q ss_pred ----------C------------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 241 ----------D------------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ----------~------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+ ..+.+.+.+.+++.|++++.+++|+++..+++++.+.+.+|+++.++.||.|.|.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 0 012223455667789999999999999888888777778888899999999999876
Q ss_pred CC
Q 042564 299 NT 300 (498)
Q Consensus 299 ~~ 300 (498)
..
T Consensus 166 ~v 167 (487)
T PRK07190 166 FV 167 (487)
T ss_pred HH
Confidence 44
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=75.52 Aligned_cols=27 Identities=41% Similarity=0.427 Sum_probs=26.1
Q ss_pred EECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 28 VIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 28 IIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|||+|.||++||++|++.|.+|+|+||
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK 27 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEA 27 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeC
Confidence 799999999999999999999999995
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.3e-05 Score=83.68 Aligned_cols=41 Identities=37% Similarity=0.436 Sum_probs=36.7
Q ss_pred CccEEEECCChhHHHHHHHHHhC-CCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF-GAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
++||+|||||++||+||++|++. |.+|+|+|+ ...+||.|.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa---------~~rvGGr~~ 53 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEA---------RDRVGGNIT 53 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEec---------CCCCCCcee
Confidence 46999999999999999999999 999999996 567888864
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=76.04 Aligned_cols=100 Identities=26% Similarity=0.330 Sum_probs=66.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+++ .+ .+ .|
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~------~~---~~---------l~------------------------- 203 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQR------SD---RL---------LP------------------------- 203 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc------CC---cC---------CC-------------------------
Confidence 5899999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeC-CCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQL-DGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~-~g~~~~~~~d~liiAtG~~p~~ 179 (498)
.++. .+...+...+++.||+++.++ +..++ .+.+.+... ++...++++|.+++|+|.+|+.
T Consensus 204 ---~~d~------------~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 204 ---REEP------------EISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred ---ccCH------------HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 0110 011223345567799999886 55553 233444432 2223579999999999999887
Q ss_pred CC
Q 042564 180 AP 181 (498)
Q Consensus 180 p~ 181 (498)
..
T Consensus 269 ~~ 270 (463)
T TIGR02053 269 DG 270 (463)
T ss_pred CC
Confidence 63
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0001 Score=75.92 Aligned_cols=98 Identities=19% Similarity=0.277 Sum_probs=68.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ ... . +
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~----------~~~----~----l-------------------------- 203 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVR----------GDA----P----L-------------------------- 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEec----------CCC----C----c--------------------------
Confidence 5899999999999999999999999999993 110 0 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC---CEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP---NEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~---~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
..++ . .+...+...+++.|++++.++ +..++. ..+.+...+|+ ++.+|.+++|+|.+|+.
T Consensus 204 --~~~~-~-----------~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~--~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 204 --RGFD-P-----------DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGE--TLTVDCLIWAIGREPNT 267 (450)
T ss_pred --cccC-H-----------HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCc--EEEeCEEEEeeCCCcCC
Confidence 0000 0 011223345567899999875 555532 23666666664 78999999999999876
Q ss_pred CC
Q 042564 180 AP 181 (498)
Q Consensus 180 p~ 181 (498)
..
T Consensus 268 ~~ 269 (450)
T PRK06116 268 DG 269 (450)
T ss_pred CC
Confidence 53
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=75.69 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=65.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+|+++ . ..+ .|
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~------~---~~~---------l~------------------------- 208 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIER------G---PRL---------LP------------------------- 208 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEc------C---CCC---------Cc-------------------------
Confidence 5899999999999999999999999999993 1 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEeC-CCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQL-DGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~~-~g~~~~~~~d~liiAtG~~p~~ 179 (498)
..+. .+...+...+++.|++++.++ +..++. +.+.+... ++...++.+|.||+|+|.+|+.
T Consensus 209 ---~~~~------------~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 209 ---REDE------------DVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred ---ccCH------------HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 0000 011223345667899999875 555543 23333321 1223479999999999999886
Q ss_pred C
Q 042564 180 A 180 (498)
Q Consensus 180 p 180 (498)
.
T Consensus 274 ~ 274 (463)
T PRK06370 274 D 274 (463)
T ss_pred C
Confidence 5
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00014 Score=68.81 Aligned_cols=53 Identities=26% Similarity=0.277 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 246 AVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 246 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+.+++.-..-+-.+.+++.|.++..-.+++.++..+|+.-.+|.||+|+-..-
T Consensus 221 ~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dq 273 (447)
T COG2907 221 AYVQRLAADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQ 273 (447)
T ss_pred HHHHHHhccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHH
Confidence 33444333334458899999999998899999988999889999999975433
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=75.76 Aligned_cols=98 Identities=22% Similarity=0.251 Sum_probs=68.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-.|..+++.|.+|+|+++ .+ .+ +
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~------~~---~~---------l-------------------------- 239 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFR------KE---LP---------L-------------------------- 239 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEe------cC---Cc---------C--------------------------
Confidence 5799999999999999999999999999993 11 10 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+.++. .+...+.+.+++.||+++.++ +..++ .+.+.+...+|+ ++.+|.+++|+|.+|+..
T Consensus 240 --~~~d~------------~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~--~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 240 --RGFDD------------EMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGE--EFVADVVLFATGRAPNTK 303 (499)
T ss_pred --cccCH------------HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCc--EEEcCEEEEeecCCCCCC
Confidence 00110 111223344567899999885 44443 345666666654 799999999999998865
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 304 ~ 304 (499)
T PLN02507 304 R 304 (499)
T ss_pred C
Confidence 3
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.4e-05 Score=78.32 Aligned_cols=31 Identities=35% Similarity=0.402 Sum_probs=29.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.||+|||||++|+.+|..|++.|.+|+|+|+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~ 31 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEM 31 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 3799999999999999999999999999994
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=75.60 Aligned_cols=98 Identities=24% Similarity=0.334 Sum_probs=68.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ . ..+ .
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~------~---~~~---------l-------------------------- 213 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSS------R---DRV---------L-------------------------- 213 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEc------C---CcC---------C--------------------------
Confidence 4799999999999999999999999999993 1 110 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+..+. . ....+...+++.||+++.++ +..+ +.+.+.+...+|+ ++++|.+++|+|.+|+..
T Consensus 214 --~~~d~-~-----------~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~--~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 214 --PGEDA-D-----------AAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGR--TVEGSHALMAVGSVPNTA 277 (466)
T ss_pred --CCCCH-H-----------HHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCc--EEEecEEEEeecCCcCCC
Confidence 00111 0 11223445667899999875 4445 3455666666664 799999999999998865
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 278 ~ 278 (466)
T PRK07845 278 G 278 (466)
T ss_pred C
Confidence 3
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.6e-05 Score=81.59 Aligned_cols=48 Identities=25% Similarity=0.483 Sum_probs=39.4
Q ss_pred HHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 248 VARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
+.+.+.+ ++++++++.|++|...++++.|++.+|+++.+|.||+|+..
T Consensus 203 l~~~l~~-~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 203 VINTLAK-GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred HHHHHhc-cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 3344433 67899999999999888888888888888999999999854
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.2e-05 Score=73.92 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+||+|||||.+|.+.|+.|++.|.+|.+||+
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIER 76 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIER 76 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEec
Confidence 468999999999999999999999999999995
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=74.50 Aligned_cols=96 Identities=31% Similarity=0.403 Sum_probs=67.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||+|++|+.+|..|++.|++|+++|+ ...+++..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~---------~~~~~~~~-------------------------------- 175 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEA---------ADRLGGQL-------------------------------- 175 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEc---------ccccchhh--------------------------------
Confidence 6899999999999999999999999999993 22222110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEE--E---EEeCCCceEEEEcCeEEEcCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEV--E---VTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~--~---v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+. ..+...+...++..||+++.+. ...++.+.. . +...++. .+.+|.+++++|.+|
T Consensus 176 ----------~~------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~g~~p 237 (415)
T COG0446 176 ----------LD------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE--EIKADLVIIGPGERP 237 (415)
T ss_pred ----------hh------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc--EEEeeEEEEeecccc
Confidence 00 2333445566777899998876 455554421 1 3333443 899999999999998
Q ss_pred C
Q 042564 178 Q 178 (498)
Q Consensus 178 ~ 178 (498)
+
T Consensus 238 ~ 238 (415)
T COG0446 238 N 238 (415)
T ss_pred c
Confidence 5
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.84 E-value=6e-05 Score=77.81 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CC--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LR--GFDDEMRAVVARNLEGRGINLHPRTTIKELIK 270 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 270 (498)
..++|+|||+|+.|+.+|..+++.|.+|+++++.+.+ ++ .++.++.....+.+++.|++++.++.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 3579999999999999999999999999999987653 12 256777777778889999999999866321
Q ss_pred eCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 271 SEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 271 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
+.+.+ ....+|.||+|+|..+..
T Consensus 218 ------~~~~~-~~~~~D~vilAtGa~~~~ 240 (467)
T TIGR01318 218 ------ISLDD-LLEDYDAVFLGVGTYRSM 240 (467)
T ss_pred ------cCHHH-HHhcCCEEEEEeCCCCCC
Confidence 11111 124699999999998754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=75.30 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=66.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+|+++ .+ .+.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~------~~---~~l----------------------------------- 219 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEA------LP---AFL----------------------------------- 219 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeC------CC---ccC-----------------------------------
Confidence 5899999999999999999999999999993 11 100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCC--CceEEEEcCeEEEcCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLD--GTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~--g~~~~~~~d~liiAtG~~p~ 178 (498)
+..+ .+ +...+...+++.|++++.++ +..++ ...+.+...+ |+...+++|.|++|+|.+|+
T Consensus 220 --~~~d-~~-----------~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 220 --AAAD-EQ-----------VAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred --CcCC-HH-----------HHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 0001 01 11112234556799999875 55554 3345554332 44457999999999999998
Q ss_pred CCC
Q 042564 179 RAP 181 (498)
Q Consensus 179 ~p~ 181 (498)
...
T Consensus 286 ~~~ 288 (475)
T PRK06327 286 TDG 288 (475)
T ss_pred CCC
Confidence 763
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.6e-05 Score=81.93 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=34.9
Q ss_pred EEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 258 NLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
+++++++|++|..+++++.|++.+|+++.+|.||+|+..
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence 799999999999887778888888989999999999874
|
|
| >PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00034 Score=74.02 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=33.6
Q ss_pred hHHHHHHHHhCCcEEEEeE-EE-EE-e-CCEE---EE-EeCCCceEEEEcCeEEEcCCCCC
Q 042564 125 NGIYKRLLSNAGVKLYEGE-GK-IV-G-PNEV---EV-TQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 125 ~~~~~~~~~~~gv~~~~~~-~~-~i-~-~~~~---~v-~~~~g~~~~~~~d~liiAtG~~p 177 (498)
...+.+...+.+|+++.++ +. .+ + .+.+ .+ ...+|+...+.++.||||||.-.
T Consensus 129 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 129 LHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 3334444556799999886 33 33 3 3332 22 23467667889999999999654
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00014 Score=74.78 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=67.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..+++.|.+|+|+++ .+ .+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~------~~---~il----------------------------------- 202 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIR------HE---RVL----------------------------------- 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEec------CC---CCC-----------------------------------
Confidence 5899999999999999999999999999993 11 100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC---CEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP---NEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~---~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
..+|. .+...+...+++.||+++.++ +..+.. +...+..++|+ ..+.+|.+++|+|.+|+.
T Consensus 203 --~~~d~------------~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~-~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 203 --RSFDS------------MISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGK-SIDDVDELIWAIGRKPNT 267 (450)
T ss_pred --cccCH------------HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCc-EEEEcCEEEEeeCCCcCc
Confidence 00110 011223344566899999875 444432 23556665552 479999999999999886
Q ss_pred C
Q 042564 180 A 180 (498)
Q Consensus 180 p 180 (498)
.
T Consensus 268 ~ 268 (450)
T TIGR01421 268 K 268 (450)
T ss_pred c
Confidence 5
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00016 Score=71.63 Aligned_cols=93 Identities=17% Similarity=0.306 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCe-EEEEEC-----CCeEEEcCEEEEecCCCcCCCCCCcccCCceeC-
Q 042564 242 DEMRAVVARNLEGR-GINLHPRTTIKELIKSEEG-VKVITD-----HGEEIVADVVLFATGRAPNTKRLNLKAVGVEVD- 313 (498)
Q Consensus 242 ~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~-~~v~~~-----~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~- 313 (498)
..+.+.+.+.+++. |++++++++|++|.+.+++ ..|.+. +..++.++.|++..|-..-.- ++.+||+-.
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~L---Lqksgi~e~~ 257 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPL---LQKSGIPEGK 257 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHH---HHHcCChhhc
Confidence 45677777778777 9999999999999998777 666552 234799999999999764332 567777422
Q ss_pred C-CCCeEcCCCCCCCCC--------CeEEeccc
Q 042564 314 Q-TGAVKVDENSRTNVP--------SIWAVGDV 337 (498)
Q Consensus 314 ~-~g~i~vd~~~~t~~~--------~iya~GD~ 337 (498)
. .|+++--.+++|+.| -||..-.+
T Consensus 258 gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 258 GYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred ccCCCcccceEEecCCHHHHHHhcceeeeeCCC
Confidence 1 233333356676544 36766544
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.81 E-value=7e-05 Score=76.85 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH--CCCcEEEEeeCCCCC--------CC--CCHHHHHHHHHHHHhCCCEEEcCccEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRG--MGSTVDLLFRKELPL--------RG--FDDEMRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~--~g~~V~lv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ....+...+.+.++..+|+++.|..+-.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46799999999999999999986 799999999988653 21 1223445566677778999988755521
Q ss_pred EEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 268 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
.+.+++-. ..+|.||+|+|..+.
T Consensus 105 --------dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 --------DVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred --------cccHHHHh-hhCCEEEEecCCCCC
Confidence 13333322 468999999999864
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=74.71 Aligned_cols=99 Identities=24% Similarity=0.311 Sum_probs=65.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..+++.|.+|+|+|+ .+ .+ .
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~------~~---~i---------l-------------------------- 210 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEY------LD---RI---------C-------------------------- 210 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeC------CC---CC---------C--------------------------
Confidence 5799999999999999999999999999993 11 10 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEe---CCCceEEEEcCeEEEcCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQ---LDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~---~~g~~~~~~~d~liiAtG~~p 177 (498)
+.++. + +...+.+.+++.||+++.++ +..+.. +.+.+.. .+|+...+.+|.|++|+|.+|
T Consensus 211 --~~~d~-~-----------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 211 --PGTDT-E-----------TAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred --CCCCH-H-----------HHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence 00110 0 11123344566799999885 445532 3444432 234345799999999999988
Q ss_pred CCC
Q 042564 178 QRA 180 (498)
Q Consensus 178 ~~p 180 (498)
+..
T Consensus 277 n~~ 279 (466)
T PRK06115 277 YTQ 279 (466)
T ss_pred ccc
Confidence 754
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.3e-05 Score=81.95 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G 295 (498)
.+.+.+.+.+. +-.++++++|++|...++++.|++.+|+++.+|.||+++.
T Consensus 243 ~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 243 SVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 34444544442 2368999999999988888899999998899999999986
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.6e-05 Score=77.39 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=68.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCH-HHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDD-EMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~-~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++. ++. ++.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 3579999999999999999999999999999986542 121 222 3666666788889999999975521
Q ss_pred EeCCeEEEEECCC-eEEEcCEEEEecCC-CcCC
Q 042564 270 KSEEGVKVITDHG-EEIVADVVLFATGR-APNT 300 (498)
Q Consensus 270 ~~~~~~~v~~~~g-~~i~~D~vi~a~G~-~p~~ 300 (498)
.+.+.+. +.+.+|.||+|||. .|..
T Consensus 217 ------~v~~~~~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 ------TVTIDELLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred ------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence 1222222 23569999999998 4644
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.9e-05 Score=77.34 Aligned_cols=34 Identities=32% Similarity=0.504 Sum_probs=31.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...|||||||||.||+.||..+++.|.+.+|+-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 4579999999999999999999999999999984
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00024 Score=72.44 Aligned_cols=99 Identities=13% Similarity=0.238 Sum_probs=73.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC----CC---CC---------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL----RG---FD--------------------------------- 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l----~~---~~--------------------------------- 241 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+..- .. +.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 98 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDADY 98 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCCC
Confidence 479999999999999999999999999999765310 00 00
Q ss_pred ----------------------HHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECC-C--eEEEcCEEEEecC
Q 042564 242 ----------------------DEMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDH-G--EEIVADVVLFATG 295 (498)
Q Consensus 242 ----------------------~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~-g--~~i~~D~vi~a~G 295 (498)
..+.+.+.+.+.+. |+++++++.+.+++.+++.+.+++.+ + .++.+|+||.|.|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG 178 (415)
T PRK07364 99 PGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADG 178 (415)
T ss_pred CceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCC
Confidence 11122233444443 79999999999998777777777753 2 3699999999999
Q ss_pred CCcCC
Q 042564 296 RAPNT 300 (498)
Q Consensus 296 ~~p~~ 300 (498)
..+..
T Consensus 179 ~~S~v 183 (415)
T PRK07364 179 ARSPI 183 (415)
T ss_pred CCchh
Confidence 87765
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.3e-05 Score=78.59 Aligned_cols=39 Identities=31% Similarity=0.398 Sum_probs=36.0
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
+|+|+|||.|||+||++|++.|++|+|+|. ...+||-|.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea---------~~~~GGk~~ 40 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEA---------RDRLGGKVA 40 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEec---------cCccCceee
Confidence 699999999999999999999999999995 677888874
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00019 Score=73.86 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=64.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+++ . ..+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~------~---~~l------------------------------------ 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNR------S---GRL------------------------------------ 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEc------C---Ccc------------------------------------
Confidence 5899999999999999999999999999993 1 110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.+.++.. + ...+...+ +.+++++.+. +..++ .+.+.+...+|+ ++.+|.|++|+|.+|+..
T Consensus 202 -l~~~d~~-~-----------~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~--~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 202 -LRHLDDD-I-----------SERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGS--TVEADVLLVATGRVPNGD 265 (451)
T ss_pred -ccccCHH-H-----------HHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCc--EeecCEEEEEECCccCcc
Confidence 0001110 0 01111222 3468888765 44453 335566666654 799999999999998875
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 266 ~ 266 (451)
T PRK07846 266 L 266 (451)
T ss_pred c
Confidence 4
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00029 Score=72.84 Aligned_cols=99 Identities=26% Similarity=0.317 Sum_probs=65.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ . ..+. |
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~------~---~~~l---------~------------------------- 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFER------G---DRIL---------P------------------------- 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEec------C---CCcC---------c-------------------------
Confidence 5899999999999999999999999999993 1 1100 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--C-EEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--N-EVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~-~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
.++ ..+...+...+++. |+++.++ +..++. + .+.+...+++..++.+|.+++|+|.+|+.
T Consensus 207 ---~~d------------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 207 ---LED------------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred ---chh------------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 000 01122233445666 8888765 444432 2 34443334444579999999999999887
Q ss_pred CC
Q 042564 180 AP 181 (498)
Q Consensus 180 p~ 181 (498)
..
T Consensus 271 ~~ 272 (460)
T PRK06292 271 DG 272 (460)
T ss_pred CC
Confidence 63
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.1e-05 Score=84.76 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHHhC--CCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANF--GAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek 54 (498)
+|+||||||||+++|+.|++. |++|+|+|+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr 33 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVER 33 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 699999999999999999997 899999994
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=70.37 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=73.7
Q ss_pred CccEEEECCChhHHHHHHHHHh--------------CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHh
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN--------------FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASF 88 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~--------------~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~ 88 (498)
.-++|||||||.|...|.+|+. ...+|+|+|. ..
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA----------~d---------------------- 265 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEA----------AD---------------------- 265 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeecc----------ch----------------------
Confidence 3589999999999999999985 2358888882 11
Q ss_pred hHHHhhhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcC
Q 042564 89 GGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAK 167 (498)
Q Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d 167 (498)
.++...+ +++..+-++.+.+.+|++..++ ++.+.+..+.+...+|+..++.|-
T Consensus 266 -----------------------~iL~mFd---krl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG 319 (491)
T KOG2495|consen 266 -----------------------HILNMFD---KRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYG 319 (491)
T ss_pred -----------------------hHHHHHH---HHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecce
Confidence 0011111 2233444567788899999996 667889999998888888899999
Q ss_pred eEEEcCCCCCCC
Q 042564 168 HILIATGSRAQR 179 (498)
Q Consensus 168 ~liiAtG~~p~~ 179 (498)
-++-|||..|+.
T Consensus 320 ~lVWatG~~~rp 331 (491)
T KOG2495|consen 320 LLVWATGNGPRP 331 (491)
T ss_pred EEEecCCCCCch
Confidence 999999987653
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00026 Score=72.72 Aligned_cols=96 Identities=28% Similarity=0.377 Sum_probs=66.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+|+++ .. . ..|
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~----------~~---~-----~l~------------------------- 195 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEA----------AS---L-----FLP------------------------- 195 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEec----------CC---C-----CCC-------------------------
Confidence 4799999999999999999999999999993 11 0 000
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
..+. .+...+.+.+++.||+++.++ +..++ .+.+.+...++ ++.+|.+++|+|.+|+..
T Consensus 196 ---~~~~------------~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g---~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 196 ---REDR------------DIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA---QLAVDALLIASGRQPATA 257 (441)
T ss_pred ---CcCH------------HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC---eEEeCEEEEeecCCcCCC
Confidence 0110 011223445677899999875 44553 34556655443 588999999999998764
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00019 Score=74.33 Aligned_cols=96 Identities=21% Similarity=0.295 Sum_probs=66.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||+|+.|+..|..|++.|.+|+++++ ..+ +|
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~----------~~~---------l~------------------------- 214 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLAR----------SRV---------LS------------------------- 214 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEC----------CCC---------CC-------------------------
Confidence 5799999999999999999999999999992 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
..+ .+ +...+...+++.||+++.+. +..++ ...+.+...++ ++.+|.|++|+|.+|+..
T Consensus 215 ---~~~-~~-----------~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~---~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 215 ---QED-PA-----------VGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG---TLRAEQLLVATGRTPNTE 276 (468)
T ss_pred ---CCC-HH-----------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC---EEEeCEEEEccCCCCCcC
Confidence 000 00 11223445667899999874 55554 33445554333 699999999999998765
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 277 ~ 277 (468)
T PRK14694 277 N 277 (468)
T ss_pred C
Confidence 3
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00036 Score=72.79 Aligned_cols=135 Identities=21% Similarity=0.260 Sum_probs=84.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------------------------------CCC---------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------------------------------RGF--------- 240 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------------------------------~~~--------- 240 (498)
.|+|+|||+|++|+-.+..+.+.|.+++++++.+.+- +.+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 3799999999999999999999999999999887431 011
Q ss_pred --CHHHHHHHHHHHHhCCC--EEEcCccEEEEEEeCC-----eEEEEECC-Ce--EEEcCEEEEecCCC--cCCCCCCcc
Q 042564 241 --DDEMRAVVARNLEGRGI--NLHPRTTIKELIKSEE-----GVKVITDH-GE--EIVADVVLFATGRA--PNTKRLNLK 306 (498)
Q Consensus 241 --~~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~-----~~~v~~~~-g~--~i~~D~vi~a~G~~--p~~~~l~l~ 306 (498)
.+++.+.++...+..++ .++++++|.++...++ ...|++.+ |+ +..+|.|++|+|.. |+.....+
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~- 159 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF- 159 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB------
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh-
Confidence 14577778888877766 5889999999987653 36676653 43 35689999999964 44331001
Q ss_pred cCCceeCCCCCeEcCCCCCC----CCCCeEEecccC
Q 042564 307 AVGVEVDQTGAVKVDENSRT----NVPSIWAVGDVT 338 (498)
Q Consensus 307 ~~gi~~~~~g~i~vd~~~~t----~~~~iya~GD~~ 338 (498)
.|++-- +|.+.--..++. ..++|-++|-..
T Consensus 160 -~G~e~F-~G~i~HS~~yr~~~~f~gKrVlVVG~g~ 193 (531)
T PF00743_consen 160 -PGLEKF-KGEIIHSKDYRDPEPFKGKRVLVVGGGN 193 (531)
T ss_dssp -CTGGGH-CSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred -hhhhcC-CeeEEccccCcChhhcCCCEEEEEeCCH
Confidence 122211 244443333332 456788888543
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=80.40 Aligned_cols=92 Identities=20% Similarity=0.264 Sum_probs=69.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
+++|+|||+|+.|+..|..|++.|.+|+++++.+.+ ++. ++.++.....+.+++.||++++++.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~----- 505 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG----- 505 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC-----
Confidence 469999999999999999999999999999986532 121 456676666777888999999986541
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCC-CcCC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGR-APNT 300 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~ 300 (498)
. .+++++.....+|.||+|+|. .|..
T Consensus 506 -~--~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 506 -K--TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -C--cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 1 133333334669999999998 4654
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00044 Score=72.95 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=75.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-----C------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-----F------------------------------------ 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-----~------------------------------------ 240 (498)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... +
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 90 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGRC 90 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCCE
Confidence 57999999999999999999999999999987521000 0
Q ss_pred ----C-----------------HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEEC--CC--eEEEcCEEEEec
Q 042564 241 ----D-----------------DEMRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVITD--HG--EEIVADVVLFAT 294 (498)
Q Consensus 241 ----~-----------------~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~~--~g--~~i~~D~vi~a~ 294 (498)
+ +.+.+.+.+.+.+ .|+++++++++++++.+++++.+++. +| +++.+|.||-|.
T Consensus 91 ~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgAD 170 (538)
T PRK06183 91 LAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCD 170 (538)
T ss_pred EEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecC
Confidence 0 0122334444544 38999999999999988888777775 46 479999999999
Q ss_pred CCCcCC
Q 042564 295 GRAPNT 300 (498)
Q Consensus 295 G~~p~~ 300 (498)
|.++..
T Consensus 171 G~~S~v 176 (538)
T PRK06183 171 GANSFV 176 (538)
T ss_pred CCchhH
Confidence 987654
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00053 Score=69.51 Aligned_cols=100 Identities=10% Similarity=0.148 Sum_probs=74.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC---------C-------------------------------CC-
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL---------R-------------------------------GF- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l---------~-------------------------------~~- 240 (498)
++|+|||||+.|+-+|..|++.|.+|+++++.+.+- + ..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 689999999999999999999999999999776310 0 00
Q ss_pred -----C------------------HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEE---CCCeEEEcCEEEEe
Q 042564 241 -----D------------------DEMRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVIT---DHGEEIVADVVLFA 293 (498)
Q Consensus 241 -----~------------------~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~i~~D~vi~a 293 (498)
+ .++.+.+.+.+.+ .+++++++++|.++..+++++.+++ .+++++.+|+||-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgA 162 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIAC 162 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEEC
Confidence 0 1222334444444 4799999999999987777776665 34457999999999
Q ss_pred cCCCcCCC
Q 042564 294 TGRAPNTK 301 (498)
Q Consensus 294 ~G~~p~~~ 301 (498)
-|.++..-
T Consensus 163 DG~~S~vR 170 (400)
T PRK06475 163 DGVWSMLR 170 (400)
T ss_pred CCccHhHH
Confidence 99877553
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=76.49 Aligned_cols=90 Identities=22% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT 279 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~ 279 (498)
..++++|+|+|.+|+++|..|.+.|.+|+++++.+. +....+.+.+++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~------------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT------------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-------------
Confidence 357899999999999999999999999999986542 233455667888899999875442
Q ss_pred CCCeEEEcCEEEEecCCCcCCCCCC-cccCCcee
Q 042564 280 DHGEEIVADVVLFATGRAPNTKRLN-LKAVGVEV 312 (498)
Q Consensus 280 ~~g~~i~~D~vi~a~G~~p~~~~l~-l~~~gi~~ 312 (498)
....+|.||+++|..|+.+.+. +++.|+++
T Consensus 75 ---~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 75 ---LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred ---ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 0245899999999999998531 24445554
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00018 Score=72.13 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHCCCcE------EEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC--e---EEEEE
Q 042564 211 YIAVEFASIWRGMGSTV------DLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEE--G---VKVIT 279 (498)
Q Consensus 211 ~~g~e~a~~l~~~g~~V------~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~---~~v~~ 279 (498)
.+++|+-..|.++=..+ .-+.+... ...+.+..-+.+.|+++||++++++.|+.|.-+.+ . ..+.+
T Consensus 173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~Y---NQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~ 249 (500)
T PF06100_consen 173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKY---NQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHI 249 (500)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCccccccCcc---ccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEE
Confidence 36788888887762222 22222110 13456888899999999999999999999976432 1 12222
Q ss_pred -CCCe--EEE---cCEEEEecCCCcCC
Q 042564 280 -DHGE--EIV---ADVVLFATGRAPNT 300 (498)
Q Consensus 280 -~~g~--~i~---~D~vi~a~G~~p~~ 300 (498)
.+|. .++ -|+|++..|..-..
T Consensus 250 ~~~g~~~~i~l~~~DlV~vT~GS~t~~ 276 (500)
T PF06100_consen 250 EQDGKEETIDLGPDDLVFVTNGSMTEG 276 (500)
T ss_pred EcCCCeeEEEeCCCCEEEEECCccccc
Confidence 3443 232 58888888865433
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.69 E-value=4e-05 Score=79.10 Aligned_cols=55 Identities=22% Similarity=0.389 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCe-----EEEcCEEEEecCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGE-----EIVADVVLFATGR 296 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~-----~i~~D~vi~a~G~ 296 (498)
..+.+.+.+.+++.|++|++++.|++|...+++ ..+++.+++ ++.+|.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 557788888888899999999999999754443 346665554 7899999999875
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0004 Score=71.52 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=64.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ .+ .+.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~------~~---~ll----------------------------------- 205 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNR------ST---KLL----------------------------------- 205 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEc------cC---ccc-----------------------------------
Confidence 5899999999999999999999999999993 11 100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+.++. ++ ...+.+.+ +.+++++.+. +..++ .+.+.+...+|+ ++++|.+++|+|.+|+..
T Consensus 206 --~~~d~-~~-----------~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~--~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 206 --RHLDE-DI-----------SDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGS--TVTADVLLVATGRVPNGD 268 (452)
T ss_pred --cccCH-HH-----------HHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCC--EEEcCEEEEeeccCcCCC
Confidence 00110 00 01112222 3478888764 44443 345666666664 799999999999998765
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 269 ~ 269 (452)
T TIGR03452 269 L 269 (452)
T ss_pred C
Confidence 3
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00035 Score=68.98 Aligned_cols=93 Identities=29% Similarity=0.396 Sum_probs=66.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEee-CCCCCC-----C-------------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFR-KELPLR-----G------------------------------------- 239 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~-~~~~l~-----~------------------------------------- 239 (498)
.|+|||||..|+|.|..+++.|.+|.++.. .+.+.. .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 489999999999999999999999999943 222110 0
Q ss_pred -----------CCH-HHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCC
Q 042564 240 -----------FDD-EMRAVVARNLEG-RGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 240 -----------~~~-~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.|. ...+.+.+.++. .+++++. .+|.++..+++. ..|.+.+|+.+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 011 133335666666 5898874 589999877665 6788999999999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00032 Score=72.80 Aligned_cols=95 Identities=23% Similarity=0.286 Sum_probs=66.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..+++.|.+|+|+++ ..+ +|
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~----------~~~---------l~------------------------- 224 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILAR----------STL---------LF------------------------- 224 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEc----------CCC---------CC-------------------------
Confidence 5799999999999999999999999999992 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.++. .+...+.+.+++.||+++.+. +..+ +.+.+.+...++ ++.+|.+++|+|..|+..
T Consensus 225 ---~~d~------------~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g---~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 225 ---REDP------------LLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG---ELRAEKLLISTGRHANTH 286 (479)
T ss_pred ---cchH------------HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC---eEEeCEEEEccCCCCCcc
Confidence 0010 111223445667899999875 4444 344566655443 588999999999998765
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00035 Score=72.36 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=29.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+++|||||+.|+..|..+++.|.+|+|||
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~ 204 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVE 204 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEe
Confidence 579999999999999999999999999999
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00039 Score=72.03 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=64.4
Q ss_pred ccEEEECCChhHHHHHHHHHh---CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 24 FDLFVIGAGSGGVRAARFSAN---FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
.+++|||||+.|+..|..++. .|.+|+|+++ . ..+
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~------~---~~i--------------------------------- 225 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYR------N---NMI--------------------------------- 225 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEec------C---Ccc---------------------------------
Confidence 579999999999999977655 4999999993 1 110
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC---CEEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP---NEVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~---~~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
.+.+|. .+...+...+++.||+++.++ +..++. ....+.+.+++ ++++|.+++|+|.+
T Consensus 226 ----l~~~d~------------~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~--~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 226 ----LRGFDS------------TLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGK--TLDVDVVMMAIGRV 287 (486)
T ss_pred ----ccccCH------------HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCC--EEEcCEEEEeeCCC
Confidence 001110 111223345667899999886 444532 23455555554 79999999999998
Q ss_pred CCCC
Q 042564 177 AQRA 180 (498)
Q Consensus 177 p~~p 180 (498)
|+..
T Consensus 288 Pn~~ 291 (486)
T TIGR01423 288 PRTQ 291 (486)
T ss_pred cCcc
Confidence 8765
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00047 Score=69.58 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=71.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-----C-------------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-----F------------------------------------- 240 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-----~------------------------------------- 240 (498)
+|+|||+|+.|+-+|..+.+.|.+|.++++.+.+... +
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 4899999999999999999999999999976532100 0
Q ss_pred ---CHHHHHHHHHHHHhCCCEEEcCccEEEEEEe-CCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 241 ---DDEMRAVVARNLEGRGINLHPRTTIKELIKS-EEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ---~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
...+.+.+.+.+.+.|++++ ...+..+..+ ++...+++.+|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 01233445566667789886 4578888766 445677888888899999999999887
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0007 Score=63.42 Aligned_cols=30 Identities=33% Similarity=0.366 Sum_probs=28.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
-|||||+|.|||+|+..+...|-.|+|+||
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek 40 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEK 40 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEec
Confidence 599999999999999999998888999996
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=74.82 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=68.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------CC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------RG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. +++++.....+.+++.||++++++.+..-
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--- 219 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD--- 219 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc---
Confidence 4799999999999999999999999999999877542 22 45667666677888899999999876311
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
+.. ++....+|.|++|+|..
T Consensus 220 -----~~~-~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 -----ISA-DELKEQFDAVVLAGGAT 239 (485)
T ss_pred -----cCH-HHHHhhCCEEEEccCCC
Confidence 110 11135689999999998
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=62.32 Aligned_cols=52 Identities=27% Similarity=0.405 Sum_probs=42.2
Q ss_pred CCccEEEECCChhHHHHHHHHHh----CCCcEEEEccCCCCCCCCcCCCccccccc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN----FGAKVGICELPFHPISSEVIGGVGGTCVI 73 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~----~g~~V~lvek~~~~~~~~~~~~~GG~~~~ 73 (498)
.++||+|||||-.|.+.|+-|++ .|.+|++||+....-+.+..-.+||.|-.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQ 140 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQ 140 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeee
Confidence 36799999999999999999986 57999999976666555555568898843
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0017 Score=63.18 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=94.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCcEEEEeeCCCCCC----------C-----------------CC-----------H
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM-GSTVDLLFRKELPLR----------G-----------------FD-----------D 242 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~-g~~V~lv~~~~~~l~----------~-----------------~~-----------~ 242 (498)
-+|+|||+|..|+-+|..+++. |.+|+++++...+-. . ++ .
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~ 172 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAA 172 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchH
Confidence 4899999999999999999875 889999998653210 0 01 1
Q ss_pred HHHHHHHH-HHHhCCCEEEcCccEEEEEEeCCe-EEEEE-------C--CC-----eEEEcCEEEEecCCCcCCCCCC--
Q 042564 243 EMRAVVAR-NLEGRGINLHPRTTIKELIKSEEG-VKVIT-------D--HG-----EEIVADVVLFATGRAPNTKRLN-- 304 (498)
Q Consensus 243 ~~~~~l~~-~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~-------~--~g-----~~i~~D~vi~a~G~~p~~~~l~-- 304 (498)
++.+.+.+ .+++.|++++.++.+.++..+++. ..+.+ . ++ ..+.++.||+|||..+......
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~~ 252 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 252 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhhh
Confidence 11222333 344578999999999998776554 33332 1 11 2589999999999665332111
Q ss_pred -cccCCcee--CCCCCeEcCC-------CCCCCCCCeEEecccCCC----CCC--hHHH-HHHHHHHHHHHhC
Q 042564 305 -LKAVGVEV--DQTGAVKVDE-------NSRTNVPSIWAVGDVTNR----MNL--TPVA-LMEGTCFAKTVFG 360 (498)
Q Consensus 305 -l~~~gi~~--~~~g~i~vd~-------~~~t~~~~iya~GD~~~~----~~~--~~~A-~~~g~~aa~~i~~ 360 (498)
+...|+.. ..-...+++. +-+--+|++|++|=.+.. +.. .-.+ +.+|+.+|+.++.
T Consensus 253 ~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~ 325 (357)
T PLN02661 253 RLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALK 325 (357)
T ss_pred cccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHH
Confidence 11122210 0001122221 112247999999966532 222 2234 4678888888764
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00035 Score=72.50 Aligned_cols=98 Identities=23% Similarity=0.201 Sum_probs=65.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-+|..+++.|.+|+|+++ ..+
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~----------~~~------------------------------------ 214 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR----------SIL------------------------------------ 214 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe----------ccc------------------------------------
Confidence 4799999999999999999999999999992 110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCc-eEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGT-KLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~-~~~~~~d~liiAtG~~p~~ 179 (498)
.+.+|. .+...+.+.+++.||+++.+. +..+. .+.+.+...+++ ..++.+|.+++|+|.+|+.
T Consensus 215 -l~~~d~------------~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 215 -LRGFDQ------------DCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred -ccccCH------------HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 000110 011223345667899999875 33332 334455544432 2479999999999998876
Q ss_pred C
Q 042564 180 A 180 (498)
Q Consensus 180 p 180 (498)
.
T Consensus 282 ~ 282 (484)
T TIGR01438 282 R 282 (484)
T ss_pred C
Confidence 5
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00044 Score=72.58 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=65.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
..+++|||||+.|+..|..+++.|.+|+++++ .+ .+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~------~~---~i----------------------------------- 272 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFAR------GN---RL----------------------------------- 272 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEe------cc---cc-----------------------------------
Confidence 35799999999999999999999999999993 11 10
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCC---EEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPN---EVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~---~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
.+.+|. + +...+...+++.||+++.+. +..++.. .+.+...++ ..++.+|.|++|+|.+|+
T Consensus 273 --l~~~d~-~-----------i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~-~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 273 --LRKFDE-T-----------IINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDG-RKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred --cccCCH-H-----------HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCC-CEEEECCEEEECcCCCCC
Confidence 001110 0 11122344567899999876 4445432 344444333 247999999999998887
Q ss_pred CC
Q 042564 179 RA 180 (498)
Q Consensus 179 ~p 180 (498)
..
T Consensus 338 ~~ 339 (561)
T PTZ00058 338 TE 339 (561)
T ss_pred cc
Confidence 54
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00036 Score=72.73 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=66.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-.|..|++.|.+|+|+++ ..+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~----------~~~------------------------------------ 216 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR----------SIP------------------------------------ 216 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc----------Ccc------------------------------------
Confidence 4799999999999999999999999999982 110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
...++. .+...+...+++.||+++.+. +..+. .+...+...+|+ ++.+|.|++|+|.+|+..
T Consensus 217 -l~~~d~------------~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~--~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 217 -LRGFDR------------QCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGT--TELFDTVLYATGRKPDIK 281 (499)
T ss_pred -cccCCH------------HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCC--EEEcCEEEEeeCCCCCcc
Confidence 000110 011223345667899999885 33332 234556665665 689999999999998765
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 282 ~ 282 (499)
T PTZ00052 282 G 282 (499)
T ss_pred c
Confidence 3
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00019 Score=80.55 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=69.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++. .+.++.+...+.+++.||++++++.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg----- 504 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG----- 504 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-----
Confidence 369999999999999999999999999999987643 122 467788888888999999999996541
Q ss_pred CCeEEEEECCC-eEEEcCEEEEecCCC-cCC
Q 042564 272 EEGVKVITDHG-EEIVADVVLFATGRA-PNT 300 (498)
Q Consensus 272 ~~~~~v~~~~g-~~i~~D~vi~a~G~~-p~~ 300 (498)
. .+++.+- +...+|.||+|||.. |..
T Consensus 505 -~--~~~~~~l~~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 505 -K--TFTVPQLMNDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred -C--ccCHHHHhhccCCCEEEEecCCCCCCC
Confidence 1 1221111 024589999999985 543
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00063 Score=69.35 Aligned_cols=97 Identities=21% Similarity=0.169 Sum_probs=71.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCCCCC-----CCH-------------HH-------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELPLRG-----FDD-------------EM------------------- 244 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~l~~-----~~~-------------~~------------------- 244 (498)
+|+|||+|+.|+-+|..|++.| .+|+++++.+.+-.. +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 599999987642100 000 00
Q ss_pred ----------------------HHHHHHHHHhC--CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 245 ----------------------RAVVARNLEGR--GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 245 ----------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
...+.+.|.+. ...++++++|.++..+++++.+.+.+|+++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 00122222221 45678899999998877778888899989999999999998764
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.1e-05 Score=80.25 Aligned_cols=33 Identities=36% Similarity=0.471 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+||+|||||++|++||..|++.|++|+|+|+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~ 191 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEG 191 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEec
Confidence 457999999999999999999999999999995
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00077 Score=70.11 Aligned_cols=96 Identities=18% Similarity=0.277 Sum_probs=71.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC------------CC----------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG------------FD---------------------------- 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~------------~~---------------------------- 241 (498)
-+|+|||+|+.|+-+|..+.+.|.+|.++++...+... ++
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 47999999999999999999999999999864321100 00
Q ss_pred ---HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEE-EEECCCeEEEcCEEEEecCCCc
Q 042564 242 ---DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-VITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ---~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p 298 (498)
..+.+.+.+.+.+.|+++ .++.|.++..+++... +.+.+|.++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 012244555666779998 5678999887666644 4567788899999999999887
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0017 Score=65.82 Aligned_cols=135 Identities=17% Similarity=0.157 Sum_probs=88.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-------------------------------C----------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR-------------------------------G---------- 239 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~-------------------------------~---------- 239 (498)
+++++|||+|++|+-.|..|.+.|.++++++|.+.+-. .
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 68999999999999999999999999999999874310 0
Q ss_pred -CC-HHHHHHHHHHHHhCCC--EEEcCccEEEEEEeC-CeEEEEECCC----eEEEcCEEEEecCCC--cCCCCCCcccC
Q 042564 240 -FD-DEMRAVVARNLEGRGI--NLHPRTTIKELIKSE-EGVKVITDHG----EEIVADVVLFATGRA--PNTKRLNLKAV 308 (498)
Q Consensus 240 -~~-~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~-~~~~v~~~~g----~~i~~D~vi~a~G~~--p~~~~l~l~~~ 308 (498)
.. .++.+.|....+.-++ .+.+++++..+.... +...|.+.+. +...+|.|++|+|.. |+...+ ...
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~--~g~ 163 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI--PGP 163 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC--CCC
Confidence 01 1355556666666665 578888888888777 4677766543 356799999999987 555432 221
Q ss_pred CceeCCCCCeEcCCCCCC---CCCCeEEeccc
Q 042564 309 GVEVDQTGAVKVDENSRT---NVPSIWAVGDV 337 (498)
Q Consensus 309 gi~~~~~g~i~vd~~~~t---~~~~iya~GD~ 337 (498)
+++.-+...+-.-++-.. ....|.++|--
T Consensus 164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g 195 (448)
T KOG1399|consen 164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVGCG 195 (448)
T ss_pred chhhcCCcceehhhccCcccccCceEEEECCC
Confidence 222222112222222222 45778888843
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00045 Score=73.34 Aligned_cols=95 Identities=23% Similarity=0.247 Sum_probs=65.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-.|..|++.|.+|+|+++ ..+ +|
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~----------~~~---------l~------------------------- 306 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILAR----------STL---------FF------------------------- 306 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEec----------Ccc---------cc-------------------------
Confidence 5799999999999999999999999999992 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.+|. .+...+.+.+++.||+++.++ +..+. .+.+.+...++ ++.+|.+++|+|..|+..
T Consensus 307 ---~~d~------------~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~---~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 307 ---REDP------------AIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG---ELRADKLLVATGRAPNTR 368 (561)
T ss_pred ---ccCH------------HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC---eEEeCEEEEccCCCcCCC
Confidence 0010 011223445667899999875 44443 34455555443 689999999999998865
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00028 Score=77.94 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=65.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+ .+. .+.+......+.+.+.||+++++....
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence 468999999999999999999999999999987643 122 344555555667778899998874211
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
+.+.+.+...+|.||+|+|.++..
T Consensus 612 -----~~ve~l~~~gYDaVIIATGA~~~~ 635 (1012)
T TIGR03315 612 -----LTVAELKNQGYKYVILAIGAWKHG 635 (1012)
T ss_pred -----eEhhhhhcccccEEEECCCCCCCC
Confidence 112222345689999999998644
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.59 E-value=8e-05 Score=77.17 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=36.5
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.+|+++++|++|..+++++.|++.+|+++.+|.||++++.
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence 6799999999999888889999999989999999999873
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00022 Score=76.65 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=67.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+..|..|++.|.+|+++++.+.+ ++. +..++.+...+.+.+.|+++++++.+. +
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~--- 268 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R--- 268 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C---
Confidence 479999999999999999999999999999987754 122 456666667778888999999987542 1
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
.+.+.+. ...+|.||+|+|..+.
T Consensus 269 ----dv~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 ----DITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred ----ccCHHHH-HhhcCEEEEEcCCCCC
Confidence 1122211 2358999999998764
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00087 Score=67.81 Aligned_cols=99 Identities=19% Similarity=0.316 Sum_probs=74.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCcEEEEeeCCCC---CC--------------------CCC--------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM---GSTVDLLFRKELP---LR--------------------GFD-------------- 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~---g~~V~lv~~~~~~---l~--------------------~~~-------------- 241 (498)
-+|+|||+|+.|+-+|..|++. |.+|+++++.... .+ .+.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 3699999999999999999998 9999999984100 00 000
Q ss_pred ----------------------------HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEE
Q 042564 242 ----------------------------DEMRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLF 292 (498)
Q Consensus 242 ----------------------------~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~ 292 (498)
.++.+.+.+.+.+ .|+++++++++.++..+++++.+++++|..+.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ 163 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVA 163 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEE
Confidence 0112233444444 47999999999999877777888888888899999999
Q ss_pred ecCCCcCC
Q 042564 293 ATGRAPNT 300 (498)
Q Consensus 293 a~G~~p~~ 300 (498)
|.|..+..
T Consensus 164 AdG~~S~v 171 (395)
T PRK05732 164 ADGSHSAL 171 (395)
T ss_pred ecCCChhh
Confidence 99988653
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0013 Score=68.56 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=69.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--cEEEEeeCCCCCCC-----C------------------CHHH------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGS--TVDLLFRKELPLRG-----F------------------DDEM------------ 244 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv~~~~~~l~~-----~------------------~~~~------------ 244 (498)
++|+|||+|+.|+-++..|.+.+. +|++++++..+... . .+.+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 479999999999999999987644 79999986532110 0 0001
Q ss_pred -------------------------HHH---HHHHHHhCC--CEEEcCccEEEEEEeCCeEEEEECC-CeEEEcCEEEEe
Q 042564 245 -------------------------RAV---VARNLEGRG--INLHPRTTIKELIKSEEGVKVITDH-GEEIVADVVLFA 293 (498)
Q Consensus 245 -------------------------~~~---l~~~l~~~G--v~i~~~~~v~~i~~~~~~~~v~~~~-g~~i~~D~vi~a 293 (498)
.+. +.+.+.+.| +.++.+++|+++..+++++.+.+.+ +..+.+|.||+|
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLA 161 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIA 161 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEEC
Confidence 111 223334455 7788888999998888788888755 467999999999
Q ss_pred cCCCcCC
Q 042564 294 TGRAPNT 300 (498)
Q Consensus 294 ~G~~p~~ 300 (498)
+|..++.
T Consensus 162 tGh~~p~ 168 (534)
T PRK09897 162 TGHVWPD 168 (534)
T ss_pred CCCCCCC
Confidence 9975543
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00025 Score=73.40 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=67.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------C--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------R--GFDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
+++|+|||+|+.|+..|..|.+.|.+|+++++.+.+. + .++.++.....+.+.+.||++++++.+..-
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~--- 219 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKD--- 219 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCc---
Confidence 4799999999999999999999999999999876542 1 135566666677788899999999765310
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+.. +.....+|.||+|+|..+
T Consensus 220 -----~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 220 -----ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred -----CCH-HHHHhhCCEEEEecCCCC
Confidence 100 111246899999999973
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00023 Score=76.42 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=70.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------C--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------R--GFDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+..|..|++.|.+|+++++.+.+. + .++.++.+...+.+++.||++++++.+..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---- 385 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---- 385 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC----
Confidence 5899999999999999999999999999999887532 1 25677777777888999999999976631
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+ ....+|.|++|+|..+..
T Consensus 386 ----~~~~~~-l~~~~DaV~latGa~~~~ 409 (639)
T PRK12809 386 ----DITFSD-LTSEYDAVFIGVGTYGMM 409 (639)
T ss_pred ----cCCHHH-HHhcCCEEEEeCCCCCCC
Confidence 011211 124689999999987543
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0014 Score=66.28 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=74.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC--C---------------------------------------C-
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL--R---------------------------------------G- 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l--~---------------------------------------~- 239 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... . .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 479999999999999999999999999999875310 0 0
Q ss_pred -----C-------------CHHHHHHHHHHHHhCCCEEEcCccEEEEEE-eCCeEEEEE-CCCe--EEEcCEEEEecCCC
Q 042564 240 -----F-------------DDEMRAVVARNLEGRGINLHPRTTIKELIK-SEEGVKVIT-DHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 240 -----~-------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~~~v~~-~~g~--~i~~D~vi~a~G~~ 297 (498)
+ ...+.+.+.+...+.|+++++++++.+++. +++...|++ .+|+ ++.+|.||-|-|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~ 162 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFH 162 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCC
Confidence 0 012233344445667999999999999876 455566666 4664 68999999999988
Q ss_pred cCCC
Q 042564 298 PNTK 301 (498)
Q Consensus 298 p~~~ 301 (498)
...-
T Consensus 163 S~vR 166 (392)
T PRK08243 163 GVSR 166 (392)
T ss_pred Cchh
Confidence 7654
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00027 Score=71.87 Aligned_cols=90 Identities=19% Similarity=0.222 Sum_probs=69.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------CC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------RG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+.+|..|++.|..|+++++.+..- |. ++.++.+...+.|++.|++|+.++.+-.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---- 198 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---- 198 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC----
Confidence 4799999999999999999999999999999887541 22 5778999999999999999999977631
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
.+++++ ..-+.|.|++++|..-.
T Consensus 199 ----~it~~~-L~~e~Dav~l~~G~~~~ 221 (457)
T COG0493 199 ----DITLEE-LLKEYDAVFLATGAGKP 221 (457)
T ss_pred ----cCCHHH-HHHhhCEEEEeccccCC
Confidence 011111 12335999999996433
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0013 Score=64.24 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=30.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.+|+|||||.+|+++|..|.+.|++|+|+|+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~ 33 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLES 33 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEee
Confidence 35899999999999999999999999999995
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00088 Score=66.40 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=76.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
...|+++|+|..|+-+|..|...+++|++|++ .. .|+|.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~----------e~--------~~~~~----------------------- 251 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFP----------EP--------WLLPR----------------------- 251 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEcc----------Cc--------cchhh-----------------------
Confidence 45699999999999999999999999999992 11 12221
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEE-EEe----CCEEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGK-IVG----PNEVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~-~i~----~~~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
-....+.+.+..++++.||+++.++.. .++ .+...|.+.+|. ++.+|.||+.+|++|
T Consensus 252 ----------------lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~--~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 252 ----------------LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGK--TLEADLVVVGIGIKP 313 (478)
T ss_pred ----------------hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCC--EeccCeEEEeecccc
Confidence 111223444567788899999999844 332 244667777876 999999999999999
Q ss_pred CCCCCC
Q 042564 178 QRAPIP 183 (498)
Q Consensus 178 ~~p~i~ 183 (498)
+.+.+.
T Consensus 314 ~t~~~~ 319 (478)
T KOG1336|consen 314 NTSFLE 319 (478)
T ss_pred cccccc
Confidence 988655
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.49 E-value=9.4e-05 Score=71.69 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEe--CCe---EEEEECCCe----EEEcCEEEEecCCCcCCCCCCcccCCc
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKS--EEG---VKVITDHGE----EIVADVVLFATGRAPNTKRLNLKAVGV 310 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~---~~v~~~~g~----~i~~D~vi~a~G~~p~~~~l~l~~~gi 310 (498)
....+...++..++++++++.|++|..+ +.. +.+...++. .+.++.||+|.|.--...+ |..+|+
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~L--Ll~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRL--LLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHH--HHHTTE
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhh--hccccc
Confidence 4455666666669999999999999654 333 333444443 4678999999997555444 334444
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00043 Score=66.37 Aligned_cols=100 Identities=25% Similarity=0.420 Sum_probs=71.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||..||..+.-..+.|.+|++||- ...+||.
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf---------~~~i~~~--------------------------------- 249 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEF---------LDQIGGV--------------------------------- 249 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEe---------hhhhccc---------------------------------
Confidence 4799999999999999999999999999991 1222211
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe---CCEEEEEe---CCCceEEEEcCeEEEcCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG---PNEVEVTQ---LDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~---~~~~~v~~---~~g~~~~~~~d~liiAtG~~ 176 (498)
+| .++...+++.+.+.|+.+..++ +...+ .+.+.+.. .+++.+++++|.+++++|-+
T Consensus 250 ----mD------------~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 250 ----MD------------GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred ----cC------------HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence 11 1223345567778899999987 33332 22444443 34667889999999999999
Q ss_pred CCCCC
Q 042564 177 AQRAP 181 (498)
Q Consensus 177 p~~p~ 181 (498)
|+.-.
T Consensus 314 P~t~G 318 (506)
T KOG1335|consen 314 PFTEG 318 (506)
T ss_pred ccccC
Confidence 98753
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00098 Score=61.59 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=30.4
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCC------CcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFG------AKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g------~~V~lvek 54 (498)
|...++++|+|||+.|..+|+.|++.+ ..|+|+|+
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs 47 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFES 47 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEee
Confidence 334578999999999999999999966 79999994
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0016 Score=65.73 Aligned_cols=97 Identities=23% Similarity=0.256 Sum_probs=70.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC-CCCC-----------CCC------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRK-ELPL-----------RGF------------------------------ 240 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~-~~~l-----------~~~------------------------------ 240 (498)
+|+|||+|+.|+-+|..|++.|.+|.++++. +... ..+
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999987 2110 000
Q ss_pred --------CH-HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECC------C--eEEEcCEEEEecCCCcCC
Q 042564 241 --------DD-EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH------G--EEIVADVVLFATGRAPNT 300 (498)
Q Consensus 241 --------~~-~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~------g--~~i~~D~vi~a~G~~p~~ 300 (498)
+. .+-+.+.+.+.+.|++++.. .++++..+++.+.+++.+ | .++.+|.||.|.|..+..
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 00 12223455566779999765 588888777776676543 2 368999999999976644
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.001 Score=69.98 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=64.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..+++.|.+|+|+++ . ..+.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~------~---~~il----------------------------------- 288 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIR------Q---KKVL----------------------------------- 288 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEe------c---cccc-----------------------------------
Confidence 5899999999999999999999999999993 1 1100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe---CCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG---PNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~---~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+.++ ..+...+...+++.||+++.+. +..+. .+.+.+...++ ....+|.+++|+|.+|+.
T Consensus 289 --~~~d------------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g--~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 289 --RGFD------------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG--TVEGFSHVMFATGRKPNT 352 (558)
T ss_pred --cccC------------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe--EEEecCEEEEeeccccCC
Confidence 0000 0111223345567899999875 33442 34455554443 244589999999999876
Q ss_pred C
Q 042564 180 A 180 (498)
Q Consensus 180 p 180 (498)
.
T Consensus 353 ~ 353 (558)
T PLN02546 353 K 353 (558)
T ss_pred C
Confidence 5
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=68.65 Aligned_cols=94 Identities=29% Similarity=0.391 Sum_probs=67.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC-CC--CC------------------CC---------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE-LP--LR------------------GF--------------------- 240 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~-~~--l~------------------~~--------------------- 240 (498)
.|+|||||+.|++.|..+++.|.+|.++++.. .+ ++ .+
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s 85 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS 85 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence 69999999999999999999999999999873 11 00 00
Q ss_pred ------------CH-HHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCC
Q 042564 241 ------------DD-EMRAVVARNLEGR-GINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 241 ------------~~-~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
|. .+...+.+.+.+. |++++ ...|.++..+++. ..|.+.+|..+.|+.||+|+|..
T Consensus 86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 00 0122344445544 88876 4568887665555 45788889999999999999953
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00012 Score=72.87 Aligned_cols=31 Identities=39% Similarity=0.410 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.||+|||||++|+.+|+.|++.|.+|+|+|+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~ 33 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEM 33 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 5899999999999999999999999999994
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0016 Score=58.04 Aligned_cols=160 Identities=19% Similarity=0.271 Sum_probs=97.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-------CC-------------------------------H
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-------FD-------------------------------D 242 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-------~~-------------------------------~ 242 (498)
...|+|+|+|++|+..|..|++.|.+|.+++++-.+-.. |. .
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 358999999999999999999999999999987643110 11 1
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCC-e-EEEEEC-----------CCeEEEcCEEEEecCCCcCCCCCCccc--
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEE-G-VKVITD-----------HGEEIVADVVLFATGRAPNTKRLNLKA-- 307 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~-~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~~l~l~~-- 307 (498)
++...+....-+.|++++....|.++.-.++ + ..+.+. |--.++++.||-|||.....-.+-.+.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 1222334444567899999999999876555 3 223221 223688999999999765443210111
Q ss_pred -CCceeCCCCCeEcCC-------CCCCCCCCeEEecccCCC----CCCh--HHH-HHHHHHHHHHHhC
Q 042564 308 -VGVEVDQTGAVKVDE-------NSRTNVPSIWAVGDVTNR----MNLT--PVA-LMEGTCFAKTVFG 360 (498)
Q Consensus 308 -~gi~~~~~g~i~vd~-------~~~t~~~~iya~GD~~~~----~~~~--~~A-~~~g~~aa~~i~~ 360 (498)
+++++...+..+.+. +-+--.||+|++|=.+.. +... -.+ ..+|+.+|+.++.
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHH
Confidence 122222111222221 112257999999966542 2222 233 3578888877653
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0004 Score=74.93 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=67.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------C--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------R--GFDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+..|..|++.|.+|+++++.+.+. + .++.++.....+.+++.|+++++++.+..
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---- 402 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---- 402 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC----
Confidence 5799999999999999999999999999999876531 2 24566776667788889999999976521
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
.+.+.+ ....+|.|++|+|..+.
T Consensus 403 ----~i~~~~-~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 403 ----DISLES-LLEDYDAVFVGVGTYRS 425 (654)
T ss_pred ----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 011111 12368999999998654
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00014 Score=75.15 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeC--Ce----EEEEECCC---eEEEcCEEEEecCCC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSE--EG----VKVITDHG---EEIVADVVLFATGRA 297 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~----~~v~~~~g---~~i~~D~vi~a~G~~ 297 (498)
...+.+.+.+.+++.|++|++++.|++|..++ ++ ..+.+.+| +.+++|.||+|++..
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 44466778888889999999999999998753 21 23345433 568999999999854
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0015 Score=65.43 Aligned_cols=96 Identities=20% Similarity=0.293 Sum_probs=72.1
Q ss_pred eEEEEcCCHHHHHHHHHH--HHCCCcEEEEeeCCCCC-C------CCCHH------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIW--RGMGSTVDLLFRKELPL-R------GFDDE------------------------------ 243 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l--~~~g~~V~lv~~~~~~l-~------~~~~~------------------------------ 243 (498)
.|+|||+|+.|+-+|..| .+.|.+|.++++.+... + .+.++
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 489999999999999999 77899999998765430 0 01111
Q ss_pred --------HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 244 --------MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 244 --------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
+.+.+.+.+...| .++.+..|.+|..+++...+++++|+++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 2222445555344 566788999999888878889999999999999999996654
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0028 Score=63.04 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=69.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC--C----C---CCHH------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL--R----G---FDDE------------------------------ 243 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l--~----~---~~~~------------------------------ 243 (498)
+|+|||+|+.|+-+|..|++. .+|+++++.+..- + . +.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 689999999999999999998 9999999875210 0 0 0000
Q ss_pred -------------------HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE-CCCe--EEEcCEEEEecCCCcCC
Q 042564 244 -------------------MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT-DHGE--EIVADVVLFATGRAPNT 300 (498)
Q Consensus 244 -------------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~ 300 (498)
+.+.+.+ ....|+++++++.+..+..+++++.+.+ .+|+ ++.+|.||.|.|..+..
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMV 159 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence 0011222 2346899999999999988777777765 4564 68999999999987654
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00071 Score=68.67 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHH-HHCCCcEEEEeeCCCCCC--------CC--CHHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIW-RGMGSTVDLLFRKELPLR--------GF--DDEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l-~~~g~~V~lv~~~~~~l~--------~~--~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
.+++|+|||+|+.|+.+|..| .+.|.+|+++++.+.+.. .. -..+...+.+.+...+++++.|..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 468999999999999999965 467999999999887532 11 124555555666667888875533311
Q ss_pred EEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 269 IKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 269 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
.++.++ -...+|.||+|+|..+.
T Consensus 117 -------Dvt~ee-L~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 -------DLKMEE-LRNHYNCVIFCCGASEV 139 (506)
T ss_pred -------ccCHHH-HHhcCCEEEEEcCCCCC
Confidence 011111 12368999999998754
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0023 Score=64.72 Aligned_cols=98 Identities=27% Similarity=0.354 Sum_probs=75.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC------------------CCCCC-----------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP------------------LRGFD----------------------- 241 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~------------------l~~~~----------------------- 241 (498)
.|+|||+|+.|.-+|..+++.|.+|.++++++.+ .+.+.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~ 84 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV 84 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence 6999999999999999999999999999987632 11111
Q ss_pred ----------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE-CCCeEEEcCEEEEecCCCcCC
Q 042564 242 ----------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT-DHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~-~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..+-+++.+..++.|++++.++.+..+..++++..+.. .++.++.++.||.|.|.....
T Consensus 85 ~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 85 PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSAL 154 (396)
T ss_pred CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHH
Confidence 11233466777789999999999999998887755444 444679999999999976544
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00094 Score=66.75 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=64.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCC-----CCCHHHH----H-------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPLR-----GFDDEMR----A------------------------- 246 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l~-----~~~~~~~----~------------------------- 246 (498)
.|+|||+|..|+.+|..|.+. |.+|.++++.+.+.+ .+..++. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 489999999999999999987 999999998763322 1111111 1
Q ss_pred ---------HHHHH-HHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 247 ---------VVARN-LEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 247 ---------~l~~~-l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+. +++.+..++++..|.++ +.++ +++.+|+++.+|.||.|.|..+..
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v--~~~~--v~l~dg~~~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL--DADG--VDLAPGTRINARSVIDCRGFKPSA 140 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEE--eCCE--EEECCCCEEEeeEEEECCCCCCCc
Confidence 11122 22223346778888888 3344 444788899999999999988653
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0022 Score=55.64 Aligned_cols=42 Identities=33% Similarity=0.665 Sum_probs=34.9
Q ss_pred CCCEEE-cCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 255 RGINLH-PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 255 ~Gv~i~-~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.|+++. ...+|.++...+++..+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 355554 345899999888888899999999999999999996
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0024 Score=65.32 Aligned_cols=133 Identities=18% Similarity=0.256 Sum_probs=84.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCCC----------------------CCC--C--------CHHHHHHH
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKELP----------------------LRG--F--------DDEMRAVV 248 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~~----------------------l~~--~--------~~~~~~~l 248 (498)
.+|+|||+|.+|+-.|..|.+.|.. +.++++.+.+ ++. + -.++...+
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence 4799999999999999999999998 9999988621 010 1 01256677
Q ss_pred HHHHHhCCCE--EEcCccEEEEEEeC--CeEEEEECCCeE--EEcCEEEEecCC--CcCCCCCCcccCCceeCCCCCeEc
Q 042564 249 ARNLEGRGIN--LHPRTTIKELIKSE--EGVKVITDHGEE--IVADVVLFATGR--APNTKRLNLKAVGVEVDQTGAVKV 320 (498)
Q Consensus 249 ~~~l~~~Gv~--i~~~~~v~~i~~~~--~~~~v~~~~g~~--i~~D~vi~a~G~--~p~~~~l~l~~~gi~~~~~g~i~v 320 (498)
...+++.++. +..++.|..+..++ +...|+++++.. +.+|.||+|||. .|+...+ .|++.- .|.+.-
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~----~G~~~f-~g~~~H 163 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF----AGLDEF-KGRILH 163 (443)
T ss_pred HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC----CCccCC-CceEEc
Confidence 7777776554 34455555554444 357888887765 559999999996 3333221 222211 222222
Q ss_pred CC----CCCCCCCCeEEecccCC
Q 042564 321 DE----NSRTNVPSIWAVGDVTN 339 (498)
Q Consensus 321 d~----~~~t~~~~iya~GD~~~ 339 (498)
-. ...-.-++|-+||--+.
T Consensus 164 S~~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 164 SADWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred hhcCCCccccCCCeEEEECCCcc
Confidence 21 12335678999986654
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0029 Score=65.83 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=29.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..+++|||+|++|+.+|..|++.|.+|+++|
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d 46 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVD 46 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3579999999999999999999999999999
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00024 Score=76.74 Aligned_cols=33 Identities=36% Similarity=0.391 Sum_probs=31.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...+|+|||||++|++||+.|++.|++|+|+|+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~ 269 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEG 269 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999999999995
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0013 Score=70.24 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+++|||||+.|+..|..+++.|.+|+|||
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe 342 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFE 342 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEe
Confidence 479999999999999999999999999999
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00023 Score=75.44 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=32.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHh-CCCcEEEEccC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSAN-FGAKVGICELP 55 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek~ 55 (498)
|...||+||||||+||+.+|.+|++ .|.+|+|+|+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG 38 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG 38 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCC
Confidence 4456999999999999999999999 89999999954
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0023 Score=65.81 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=52.1
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCc
Q 042564 227 VDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 227 V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
-.+..+++..+ .+..+.+.+....++.|+.++.++.|++|....++ ..|++.-|. +++..+|-|+|+..
T Consensus 174 g~Ly~P~DG~~--DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 174 GGLYSPGDGVM--DPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWA 243 (856)
T ss_pred eeeecCCCccc--CHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHH
Confidence 34555554332 23456778888889999999999999999766554 567777774 99999999999865
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.003 Score=66.90 Aligned_cols=99 Identities=20% Similarity=0.319 Sum_probs=72.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC------------------------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR------------------------------------------ 238 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~------------------------------------------ 238 (498)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+....
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 35799999999999999999999999999997752100
Q ss_pred --C-------C--------------------------C-HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEE--
Q 042564 239 --G-------F--------------------------D-DEMRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVIT-- 279 (498)
Q Consensus 239 --~-------~--------------------------~-~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~-- 279 (498)
. + + ..+.+.+.+.+++ .|+++++++.++++..+++++.+++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~ 166 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED 166 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence 0 0 0 0022234444444 4899999999999988777666655
Q ss_pred -CCCe--EEEcCEEEEecCCCcC
Q 042564 280 -DHGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 280 -~~g~--~i~~D~vi~a~G~~p~ 299 (498)
.+|+ ++.+|.||.|.|.++.
T Consensus 167 ~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 167 LDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred CCCCcEEEEEEEEEEecCCcchH
Confidence 3353 6899999999997664
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00027 Score=73.35 Aligned_cols=31 Identities=35% Similarity=0.709 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|||+|||+||+|+.+|..|++.|++|++||+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~ 31 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEI 31 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEec
Confidence 6999999999999999999999999999995
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.005 Score=65.19 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=33.9
Q ss_pred HhHHHHHHHHhCCcEEEEeE-EE-EE-eCCEEE---E-EeCCCceEEEEcCeEEEcCCCCC
Q 042564 124 LNGIYKRLLSNAGVKLYEGE-GK-IV-GPNEVE---V-TQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 124 ~~~~~~~~~~~~gv~~~~~~-~~-~i-~~~~~~---v-~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+...+.+.+.+.+|+++.++ +. .+ +.+.+. + ...+|....+.++.||||||.-.
T Consensus 121 i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 121 ILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred HHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 33444455556789998886 33 23 333332 2 23456667889999999999653
|
coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase. |
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00038 Score=73.05 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeC--Ce----EEEEE---CCCeEEEcCEEEEecCCC
Q 042564 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSE--EG----VKVIT---DHGEEIVADVVLFATGRA 297 (498)
Q Consensus 240 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~----~~v~~---~~g~~i~~D~vi~a~G~~ 297 (498)
+...+.+.+.+.++++|++|++++.|++|..+. ++ ..+.+ .+++.+.+|.||+|++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 445688889999999999999999999998763 22 34555 334568999999999864
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00034 Score=65.77 Aligned_cols=45 Identities=31% Similarity=0.378 Sum_probs=36.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVI 73 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~ 73 (498)
..+||+|||+|.|||.||.+|+..|++|+++|++. ...+||+..|
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg-------eqnlGGQAfW 48 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG-------EQNLGGQAFW 48 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccc-------cccccceeee
Confidence 35899999999999999999999999999999421 3456676544
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0036 Score=63.19 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=71.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC--CC-----CC--------------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL--RG-----FD-------------------------------- 241 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l--~~-----~~-------------------------------- 241 (498)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .. +.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 3579999999999999999999999999999876310 00 00
Q ss_pred ---------------------HHHHHHHHHHHHhCCCEEEcCccEEEEEE-eCCeEEEEEC-CCe--EEEcCEEEEecCC
Q 042564 242 ---------------------DEMRAVVARNLEGRGINLHPRTTIKELIK-SEEGVKVITD-HGE--EIVADVVLFATGR 296 (498)
Q Consensus 242 ---------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~~~v~~~-~g~--~i~~D~vi~a~G~ 296 (498)
..+...+.+.+.+.|+.++++..+..+.. +++...|++. +|+ ++.+|+||-|-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCC
Confidence 01122344555566888888877776654 3445566664 675 6899999999998
Q ss_pred CcCCC
Q 042564 297 APNTK 301 (498)
Q Consensus 297 ~p~~~ 301 (498)
++..-
T Consensus 162 ~S~VR 166 (390)
T TIGR02360 162 HGVSR 166 (390)
T ss_pred chhhH
Confidence 77553
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00033 Score=74.04 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
..+.+.+.+.+++.|++|+++++|++|..++++ ..+.+.+|+.+.+|.||+|++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 567788888888899999999999999875554 4477788888999999999863
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0034 Score=70.89 Aligned_cols=102 Identities=20% Similarity=0.108 Sum_probs=70.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC----------C-CHHHHHHHHHHHHhC-CCEEEcCccEEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG----------F-DDEMRAVVARNLEGR-GINLHPRTTIKEL 268 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~----------~-~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i 268 (498)
..+|+|||+|+.|+..|..+.+.|.+|++++..+.+-.. . ..++...+.+.++.. +++++.++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 468999999999999999999999999999987643211 1 123434455666656 5999999988877
Q ss_pred EEeCCeEEEE-----E----C---CC--eEEEcCEEEEecCCCcCCCC
Q 042564 269 IKSEEGVKVI-----T----D---HG--EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 269 ~~~~~~~~v~-----~----~---~g--~~i~~D~vi~a~G~~p~~~~ 302 (498)
........+. + . .+ ..+.+|.||+|||..|....
T Consensus 243 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~p 290 (985)
T TIGR01372 243 YDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLV 290 (985)
T ss_pred ecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCC
Confidence 4321111111 0 0 01 15889999999999876543
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0048 Score=64.49 Aligned_cols=95 Identities=25% Similarity=0.322 Sum_probs=68.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC------------------CCCC---C--------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP------------------LRGF---D-------------------- 241 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~------------------l~~~---~-------------------- 241 (498)
.|+|||+|..|+++|..+++.|.+|.++++.... ...+ +
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 5899999999999999999999999999875311 0000 0
Q ss_pred -------------H-HHHHHHHHHHHhC-CCEEEcCccEEEEEEe-C-CeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 242 -------------D-EMRAVVARNLEGR-GINLHPRTTIKELIKS-E-EGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 -------------~-~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~-~-~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+ .+...+.+.+++. ++.++.+ .+.++..+ + ....|.+.+|..+.||.||+|+|...
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 0 1112345556665 7888765 66666544 3 33678888888999999999999875
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0012 Score=70.01 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------C--CCCHHHHHHHHHHHHhCCCEEEcCccE-EEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------R--GFDDEMRAVVARNLEGRGINLHPRTTI-KELI 269 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v-~~i~ 269 (498)
..++|+|||+|++|+.+|..+++.|.+|+++++.+.+. + .++.++...-.+.+.+.|++++.++.+ .++.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 35799999999999999999999999999999765431 1 245555555556677889999988665 3321
Q ss_pred EeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 270 KSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 270 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+. ....+|.||+|+|..+..
T Consensus 216 ~~~----------~~~~~D~Vi~AtG~~~~~ 236 (564)
T PRK12771 216 LEQ----------LEGEFDAVFVAIGAQLGK 236 (564)
T ss_pred HHH----------HHhhCCEEEEeeCCCCCC
Confidence 110 012479999999987543
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=70.76 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=67.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CC--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LR--GFDDEMRAVVARNLEGRGINLHPRTTIKELIK 270 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 270 (498)
..++|+|||+|+.|+..|..|.+.|.+|+++++.+.+ ++ .+..++.....+.+++.|++++.++.|..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 3578999999999999999999999999999887653 11 134555555567788899999999776320
Q ss_pred eCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 271 SEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 271 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+..++ ....+|.||+|+|..+
T Consensus 360 ------~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 ------IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred ------CCHHH-HHhcCCEEEEEcCcCC
Confidence 11111 1357999999999764
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00049 Score=68.07 Aligned_cols=41 Identities=32% Similarity=0.373 Sum_probs=34.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCC-CcEEEEccCCCCCCCCcCCCccccc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFG-AKVGICELPFHPISSEVIGGVGGTC 71 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek~~~~~~~~~~~~~GG~~ 71 (498)
...+|||||||.||++||.+|-+.| .+|+|+|. ...+||..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa---------~dRIGGRI 61 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEA---------SDRIGGRI 61 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEe---------ccccCceE
Confidence 4568999999999999999999755 59999995 56677764
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00053 Score=74.23 Aligned_cols=33 Identities=36% Similarity=0.478 Sum_probs=30.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...+|+|||||++|+.+|..|++.|++|+|+|+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~ 215 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEG 215 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEc
Confidence 357999999999999999999999999999995
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00061 Score=76.57 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=36.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
..+||+|||||++|+++|+.|++.|++|+|+|+ ...+||.|.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa---------~~~vGGri~ 733 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEA---------RSRIGGRVY 733 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEee---------ccCCCCcee
Confidence 357999999999999999999999999999995 445677653
|
|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00064 Score=71.32 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=33.1
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.|..+||+||||+|++|...|.+|++.|.+|+|+|.
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEa 38 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEA 38 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeC
Confidence 455679999999999999999999999999999994
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00082 Score=68.67 Aligned_cols=94 Identities=31% Similarity=0.386 Sum_probs=27.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC------------C--------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL------------R-------------------------------- 238 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l------------~-------------------------------- 238 (498)
.|+|||||+.|+-.|...++.|.+|.|+++.+.+- .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 48999999999999999999999999999987431 0
Q ss_pred -----CCCHH-HHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECC--C-eEEEcCEEEEecCC
Q 042564 239 -----GFDDE-MRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDH--G-EEIVADVVLFATGR 296 (498)
Q Consensus 239 -----~~~~~-~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~--g-~~i~~D~vi~a~G~ 296 (498)
.++++ ....+.+.+.+.|+++++++.|.++..+++. ..|++.+ | .++.++.+|-|||.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01111 1123456666789999999999999887654 3444432 3 47899999999994
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.012 Score=59.58 Aligned_cols=97 Identities=21% Similarity=0.245 Sum_probs=65.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC------------C--CCH--------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR------------G--FDD-------------------------- 242 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~------------~--~~~-------------------------- 242 (498)
+|+|||+|+.|+-+|..+++.|.+|.++++...... . +.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 589999999999999999999999999998643100 0 000
Q ss_pred ------------HHHHHHHHHHHhCCCEEEcCccEEEEEE---eCCeEEEEE--CC-----C--eEEEcCEEEEecCCCc
Q 042564 243 ------------EMRAVVARNLEGRGINLHPRTTIKELIK---SEEGVKVIT--DH-----G--EEIVADVVLFATGRAP 298 (498)
Q Consensus 243 ------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~---~~~~~~v~~--~~-----g--~~i~~D~vi~a~G~~p 298 (498)
.+-+.+.+...+.|++++.++ +..+.. .++...+++ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 011224455667799998774 666642 123344443 21 3 3689999999999877
Q ss_pred CC
Q 042564 299 NT 300 (498)
Q Consensus 299 ~~ 300 (498)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 55
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0019 Score=70.52 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
.+++|+|||+|+.|+.+|..|.+.|.+|+++++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 4689999999999999999999999999999974
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.004 Score=63.94 Aligned_cols=53 Identities=30% Similarity=0.431 Sum_probs=38.8
Q ss_pred HHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 248 VARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
|.+...+.||+++.+ .|..+..++++ ..|.+.+|+++.+|.+|-|+|+.....
T Consensus 160 L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~ 214 (454)
T PF04820_consen 160 LRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLA 214 (454)
T ss_dssp HHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCC
T ss_pred HHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhh
Confidence 566777889999988 57777666555 578889999999999999999976553
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0056 Score=56.35 Aligned_cols=93 Identities=19% Similarity=0.257 Sum_probs=68.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC----------C----------CHHHHHH---------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG----------F----------DDEMRAV--------------- 247 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~----------~----------~~~~~~~--------------- 247 (498)
+|+|||+|..|+-+|..|+..|.+|++++++..+-.+ + ++.+...
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 6899999999999999999999999999987632100 1 1111111
Q ss_pred ---------------------------HHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe-EEEcCEEEEecCC
Q 042564 248 ---------------------------VARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE-EIVADVVLFATGR 296 (498)
Q Consensus 248 ---------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~i~~D~vi~a~G~ 296 (498)
+.+.| ....++.++++|+++...++..++.+++|. ...+|.|++++..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCC
Confidence 22222 335778889999999888878899986665 5779999999765
|
|
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00099 Score=65.34 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
..++..+.+.+++.|-+|.++++|++|.-+.+. ..|.++||+++.+..|+..++..-
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWD 321 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHH
Confidence 568888999999999999999999999887754 789999999999988887776543
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.019 Score=60.08 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=72.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-----C--C--------------------------------C-
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR-----G--F--------------------------------D- 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~-----~--~--------------------------------~- 241 (498)
-.|+|||+|..|+-.|..+++.|.+|.++++.+..-. . + +
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~ 141 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK 141 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 3699999999999999999999999999987653100 0 0 0
Q ss_pred ------------------------------------------------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC
Q 042564 242 ------------------------------------------------DEMRAVVARNLEGRGINLHPRTTIKELIKSEE 273 (498)
Q Consensus 242 ------------------------------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~ 273 (498)
..+.+.+.+.+++.|+++++++.++++..+++
T Consensus 142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g 221 (506)
T PRK06481 142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG 221 (506)
T ss_pred HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC
Confidence 11334455666778999999999999986554
Q ss_pred e---EEEEECCCe--EEEcCEEEEecC-CCcCCCC
Q 042564 274 G---VKVITDHGE--EIVADVVLFATG-RAPNTKR 302 (498)
Q Consensus 274 ~---~~v~~~~g~--~i~~D~vi~a~G-~~p~~~~ 302 (498)
. +.+...+++ .+.++.||+|+| +.+|.++
T Consensus 222 ~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m 256 (506)
T PRK06481 222 KVTGVKVKINGKETKTISSKAVVVTTGGFGANKDM 256 (506)
T ss_pred EEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHH
Confidence 3 233334433 588999999997 7777665
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.016 Score=60.62 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=37.3
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCeEEEEECC---Ce--EEEcCEEEEecCCCc
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEGVKVITDH---GE--EIVADVVLFATGRAP 298 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~i~~D~vi~a~G~~p 298 (498)
...+.|++++.+++|.++..+++.+.+.+.+ |+ ++.++.||.|+|...
T Consensus 164 ~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 164 DAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 3556799999999999998776666565543 43 689999999999754
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0042 Score=62.50 Aligned_cols=34 Identities=26% Similarity=0.197 Sum_probs=31.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
+|+|||||..|+|+|..|++.|.+|+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999976653
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.024 Score=58.23 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC------------C--CCHH----------------------
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR------------G--FDDE---------------------- 243 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~------------~--~~~~---------------------- 243 (498)
..-+|+|||+|+.|.-+|..|++.|.+|.++++...... . +.++
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 345899999999999999999999999999998742100 0 0111
Q ss_pred ----------------HHHHHHHHHHhCCCEEEcCccEEEEEEe---CCeEEEEECC-------C--eEEEcCEEEEecC
Q 042564 244 ----------------MRAVVARNLEGRGINLHPRTTIKELIKS---EEGVKVITDH-------G--EEIVADVVLFATG 295 (498)
Q Consensus 244 ----------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~---~~~~~v~~~~-------g--~~i~~D~vi~a~G 295 (498)
+-+.+.+...+.|++++.+ .+.++... ++.+.+.+.+ | .++.+|.||-|.|
T Consensus 118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG 196 (450)
T PLN00093 118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADG 196 (450)
T ss_pred ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence 1123445566779999765 46666532 2234454422 3 4799999999999
Q ss_pred CCcCC
Q 042564 296 RAPNT 300 (498)
Q Consensus 296 ~~p~~ 300 (498)
..+..
T Consensus 197 ~~S~v 201 (450)
T PLN00093 197 ANSRV 201 (450)
T ss_pred cchHH
Confidence 76544
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.025 Score=58.13 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCEEEcCccEEEEEEeCC-e---EEEEECCCe--EEEcCEEEEecCC-CcCCCC
Q 042564 246 AVVARNLEGRGINLHPRTTIKELIKSEE-G---VKVITDHGE--EIVADVVLFATGR-APNTKR 302 (498)
Q Consensus 246 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~---~~v~~~~g~--~i~~D~vi~a~G~-~p~~~~ 302 (498)
+.+.+.+++.|+++++++.++++..+++ . +.+...+++ .+.++.||+|+|- ..|.++
T Consensus 134 ~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m 197 (439)
T TIGR01813 134 QKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEM 197 (439)
T ss_pred HHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHH
Confidence 4455566778999999999999987543 2 233334454 4789999999994 444443
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0054 Score=60.89 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=60.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC----------CCCCHH---HHHHHHHHHHhCCCEEEcCccEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL----------RGFDDE---MRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l----------~~~~~~---~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
.++++|||||..|++.|..|++.|.+|+++++.+.+- |..|-. +...+.+.-...+|++++.++|.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 5799999999999999999999999999999988642 221111 112233444456899999999999
Q ss_pred EEEeCCeEEEEECC
Q 042564 268 LIKSEEGVKVITDH 281 (498)
Q Consensus 268 i~~~~~~~~v~~~~ 281 (498)
+.+.-+..+|....
T Consensus 204 v~G~vGnF~vki~k 217 (622)
T COG1148 204 VSGSVGNFTVKIEK 217 (622)
T ss_pred ecccccceEEEEec
Confidence 98776666666543
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.012 Score=61.58 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=76.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCcEEEEeeCCCC----------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM---GSTVDLLFRKELP----------LRG--FDDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~---g~~V~lv~~~~~~----------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
.+++|||.|..|.-+...+.+. -..+|++...+++ ++. --+++.-.-.+..+++||+++.+..+.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~ 83 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI 83 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence 5799999999999998888874 3467777654432 111 123344445677889999999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRL 303 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l 303 (498)
.|... ...|+++.|.++.+|.+|+|||..|....+
T Consensus 84 ~idr~--~k~V~t~~g~~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 84 QIDRA--NKVVTTDAGRTVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred EeccC--cceEEccCCcEeecceeEEecCccccccCC
Confidence 99654 356888899999999999999999998764
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.002 Score=62.93 Aligned_cols=31 Identities=29% Similarity=0.545 Sum_probs=27.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCc--EEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAK--VGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~--V~lvek 54 (498)
.+|+|+|||++||++|++|++++.+ |+|+|+
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea 44 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEA 44 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEec
Confidence 5899999999999999999997765 566994
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.021 Score=51.06 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=70.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC--------C--------CCCC-----CCHHHHHHHHHHHHhCCCEEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE--------L--------PLRG-----FDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~--------~--------~l~~-----~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
.+|+|||+|+.+...|..+.+...+-.+++-.- . -+|. ..+++.+.+++...+.|.+++
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~ 88 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEII 88 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceee
Confidence 589999999999999888877644433333110 0 1222 467899999999999999998
Q ss_pred cCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 261 PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.. .|.++.....-..+.+ +.+.+.+|.||+|||.....-.
T Consensus 89 tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~ 128 (322)
T KOG0404|consen 89 TE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH 128 (322)
T ss_pred ee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee
Confidence 77 6777766555555555 4446899999999997655443
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.029 Score=60.20 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=68.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCcEEEEeeCCCCCCC-----------------------------------C-----
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM-GSTVDLLFRKELPLRG-----------------------------------F----- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~-g~~V~lv~~~~~~l~~-----------------------------------~----- 240 (498)
-+|+|||+|+.|+-+|..|+++ |.+|.++++.+..... +
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~~ 112 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDPA 112 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCCc
Confidence 4799999999999999999995 9999999877521000 0
Q ss_pred --------------------------C-HHHHHHHHHHHHhCC--CEEEcCccEEEEEEeCC---eEEEEEC------CC
Q 042564 241 --------------------------D-DEMRAVVARNLEGRG--INLHPRTTIKELIKSEE---GVKVITD------HG 282 (498)
Q Consensus 241 --------------------------~-~~~~~~l~~~l~~~G--v~i~~~~~v~~i~~~~~---~~~v~~~------~g 282 (498)
. ..+.+.+.+.+.+.| +.+++++++++++.+++ .+.+++. +|
T Consensus 113 ~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g 192 (634)
T PRK08294 113 DPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEG 192 (634)
T ss_pred cccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCC
Confidence 0 013333455565555 57788999999976542 3666664 35
Q ss_pred --eEEEcCEEEEecCCCc
Q 042564 283 --EEIVADVVLFATGRAP 298 (498)
Q Consensus 283 --~~i~~D~vi~a~G~~p 298 (498)
+++.+|+||-|-|.++
T Consensus 193 ~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 193 EEETVRAKYVVGCDGARS 210 (634)
T ss_pred ceEEEEeCEEEECCCCch
Confidence 5799999999999754
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.034 Score=57.63 Aligned_cols=99 Identities=25% Similarity=0.326 Sum_probs=68.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-C--------------CC--------C-----------------C-
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-L--------------RG--------F-----------------D- 241 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-l--------------~~--------~-----------------~- 241 (498)
.|+|||+|..|+-.|..+++.|.+|.++++.+.. . .. . +
T Consensus 6 DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (466)
T PRK08274 6 DVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRTDE 85 (466)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCCCH
Confidence 6999999999999999999999999999876420 0 00 0 0
Q ss_pred ---------------------------------------------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E
Q 042564 242 ---------------------------------------------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V 275 (498)
Q Consensus 242 ---------------------------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~ 275 (498)
..+...+.+.+++.|++++.+++++++..+++. .
T Consensus 86 ~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~ 165 (466)
T PRK08274 86 ALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFV 165 (466)
T ss_pred HHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEE
Confidence 112233445566789999999999999875554 3
Q ss_pred EEEE--CCC--eEEEcCEEEEecCC-CcCCC
Q 042564 276 KVIT--DHG--EEIVADVVLFATGR-APNTK 301 (498)
Q Consensus 276 ~v~~--~~g--~~i~~D~vi~a~G~-~p~~~ 301 (498)
.+.. .++ ..+.++.||+|+|- ..|.+
T Consensus 166 gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~ 196 (466)
T PRK08274 166 GARAGSAAGGAERIRAKAVVLAAGGFESNRE 196 (466)
T ss_pred EEEEEccCCceEEEECCEEEECCCCCCCCHH
Confidence 3433 233 35789999999984 44443
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.045 Score=56.63 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=28.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
..|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46899999999999999999999999998874
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.029 Score=50.37 Aligned_cols=101 Identities=27% Similarity=0.354 Sum_probs=65.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-------CC--------H-----------------------H
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-------FD--------D-----------------------E 243 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-------~~--------~-----------------------~ 243 (498)
-.|+|||+|+.|+-+|..|++.|.+|.+++++..+-.. |. . +
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~~ 97 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSVE 97 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHHH
Confidence 47999999999999999999999999999987643100 10 1 1
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeC-Ce-EEEEE------CCC-----eEEEcCEEEEecCCCcCCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSE-EG-VKVIT------DHG-----EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~-~~v~~------~~g-----~~i~~D~vi~a~G~~p~~~~ 302 (498)
....+....-+.|++++....|.++...+ ++ ..+.. ..| -.+.+..||-|||...+.-.
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~ 169 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVR 169 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTS
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHH
Confidence 22223344445899999999999987665 44 22322 122 37899999999999877654
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.00096 Score=58.71 Aligned_cols=32 Identities=41% Similarity=0.525 Sum_probs=28.7
Q ss_pred CccEEEECCChhHHHHHHHHHh--CCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN--FGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lvek 54 (498)
..||+|||+|.+||+||+..++ +..+|.+||.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~ 109 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIES 109 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEe
Confidence 3599999999999999999985 7789999993
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0028 Score=66.73 Aligned_cols=31 Identities=29% Similarity=0.250 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHHhCC-CcEEEEccC
Q 042564 25 DLFVIGAGSGGVRAARFSANFG-AKVGICELP 55 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek~ 55 (498)
|+||||||.||+.+|.+|++.+ .+|+|+|+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG 32 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAG 32 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecC
Confidence 8999999999999999999988 699999954
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0042 Score=65.76 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=30.2
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...||+||||||.||+.+|.+|++ +.+|+|+|+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~ 85 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLER 85 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEec
Confidence 346999999999999999999999 699999994
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.043 Score=57.37 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=29.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++..
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 479999999999999999999999999998764
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.027 Score=53.59 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=43.4
Q ss_pred HHHHHHhCCCEEEcCccEEEEEE---eCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 248 VARNLEGRGINLHPRTTIKELIK---SEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~---~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
++..+++.|+.++.+..+..+.. ++..+.|.+.+|..+.++.+|+++|..-|.-
T Consensus 159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~kl 215 (399)
T KOG2820|consen 159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKL 215 (399)
T ss_pred HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhh
Confidence 45677788999999998887763 3334788899999999999999999766553
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.01 Score=60.05 Aligned_cols=93 Identities=30% Similarity=0.377 Sum_probs=64.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC------------------------------------------CC-
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL------------------------------------------RG- 239 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l------------------------------------------~~- 239 (498)
.|+|||||..|+|.|.+.+++|+++.+++....-+ ..
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~s 85 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNSS 85 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccCC
Confidence 69999999999999999999999988877543110 00
Q ss_pred -----------CCHH-HHHHHHHHHHh-CCCEEEcCccEEEEEEeCC--eEEEEECCCeEEEcCEEEEecCC
Q 042564 240 -----------FDDE-MRAVVARNLEG-RGINLHPRTTIKELIKSEE--GVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 240 -----------~~~~-~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.|.. ..+.+++.++. .++.++.+ .|.++..+++ ...|++.+|..+.|+.||++||.
T Consensus 86 KGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 86 KGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 0111 12223444443 37877766 5556554333 37788999999999999999984
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.046 Score=55.70 Aligned_cols=56 Identities=27% Similarity=0.445 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecCCCcC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G~~p~ 299 (498)
+.+.+.+.+++.|+++++++.++++..+++. ..+.. .+|+ .+.++.||+|+|-...
T Consensus 143 ~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 143 LIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3444667788889999999999999887765 33333 3555 5779999999997665
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.045 Score=54.35 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=64.0
Q ss_pred HHHHHHHHHCCCcEEEEeeCCCCCCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC-eEEEcCEE
Q 042564 214 VEFASIWRGMGSTVDLLFRKELPLRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG-EEIVADVV 290 (498)
Q Consensus 214 ~e~a~~l~~~g~~V~lv~~~~~~l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~i~~D~v 290 (498)
-++..+|.++|.... .++..+++|. -..++.+.+.+.+++.||++++++.|.+| ++++..+.+.++ ..+.+|.|
T Consensus 57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~v 133 (376)
T TIGR03862 57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAV 133 (376)
T ss_pred HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEE
Confidence 356678888887643 4555666664 56789999999999999999999999999 334466666543 46999999
Q ss_pred EEecCCCcCC
Q 042564 291 LFATGRAPNT 300 (498)
Q Consensus 291 i~a~G~~p~~ 300 (498)
|+|+|-.+..
T Consensus 134 IlAtGG~s~p 143 (376)
T TIGR03862 134 VLALGGASWS 143 (376)
T ss_pred EEcCCCcccc
Confidence 9999976543
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0052 Score=63.55 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHh-CCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek 54 (498)
...+||.||||||.||+..|.+|++ ..++|+|+|+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEa 89 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEA 89 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEec
Confidence 4467999999999999999999999 6789999994
|
|
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0029 Score=63.48 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=32.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFH 57 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~ 57 (498)
.+|||+|||||..|..+|+-++-+|++|.|||+..+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF 101 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDF 101 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccc
Confidence 359999999999999999999999999999995433
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.012 Score=42.96 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=28.2
Q ss_pred EEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 206 VLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 206 ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 7999999999999999999999999998864
|
... |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.085 Score=55.06 Aligned_cols=53 Identities=26% Similarity=0.332 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCEEEcCccEEEEEEeCC-e-EEEEEC-CCe--EEEc-CEEEEecCCCc
Q 042564 246 AVVARNLEGRGINLHPRTTIKELIKSEE-G-VKVITD-HGE--EIVA-DVVLFATGRAP 298 (498)
Q Consensus 246 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~-~~v~~~-~g~--~i~~-D~vi~a~G~~p 298 (498)
+.+.+.+++.|+++++++.++++..+++ . ..|... +++ .+.+ +.||+|+|-..
T Consensus 181 ~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 181 DPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3445556677899999999999876543 2 334332 332 5778 99999999544
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.094 Score=55.35 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCC-e-EEEEE-------CCC-eEEEcCEEEEecCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEE-G-VKVIT-------DHG-EEIVADVVLFATGR 296 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~-~~v~~-------~~g-~~i~~D~vi~a~G~ 296 (498)
+...+.+.+++.||+++.++.+.++..+++ . ..+.. .++ ..+.++.||+|+|-
T Consensus 146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 146 VQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 334455556667889988989999876543 2 23322 233 36889999999985
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.039 Score=54.13 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=31.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.+|+|||||..|+-.|..|.+.|.+|.+++..+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 5799999999999999999999999999988653
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.13 Score=54.75 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=27.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.|+|||+|..|+-.|..+++.|.+|.++++..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 38899999999999999999999999988653
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.14 Score=52.35 Aligned_cols=56 Identities=14% Similarity=0.369 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCe-EEEE-ECCCe--EEEcCEEEEecCCCc
Q 042564 243 EMRAVVARNLEG-RGINLHPRTTIKELIKSEEG-VKVI-TDHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 243 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~-~~v~-~~~g~--~i~~D~vi~a~G~~p 298 (498)
.+.+.+.+.+++ .||++++++.+.++..+++. ..+. ..+++ .+.++.||+|+|-..
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 455556666654 49999999999998765554 3322 23443 588999999999643
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.15 Score=54.28 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEE---EECCCe--EEEcCEEEEecCCCc
Q 042564 246 AVVARNLEGRGINLHPRTTIKELIKSEEG-VKV---ITDHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 246 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v---~~~~g~--~i~~D~vi~a~G~~p 298 (498)
..+.+.+++.||+++.++.+.++..+++. ..+ ...+|+ .+.++.||+|||-..
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 33455566678999999999998765543 222 234554 588999999999754
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.19 Score=53.89 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHhCC-CEEEcCccEEEEEEeCCe-EEE---EECCCe--EEEcCEEEEecCC
Q 042564 248 VARNLEGRG-INLHPRTTIKELIKSEEG-VKV---ITDHGE--EIVADVVLFATGR 296 (498)
Q Consensus 248 l~~~l~~~G-v~i~~~~~v~~i~~~~~~-~~v---~~~~g~--~i~~D~vi~a~G~ 296 (498)
+.+.+++.+ |+++.++.+.++..+++. ..+ ...+++ .+.++.||+|+|-
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence 334555555 999999999998765554 223 234554 6889999999994
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.1 Score=53.71 Aligned_cols=31 Identities=35% Similarity=0.621 Sum_probs=29.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
...++|||+|..|+++|..|++.|++|+++|
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d 35 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTD 35 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3679999999999999999999999999999
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.1 Score=55.02 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=30.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
-+|+|||+|+.|+-+|..|++.|.+|+++++..
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 479999999999999999999999999999864
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.042 Score=52.46 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=74.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEe-eC-C---------CCC---CCCCHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLF-RK-E---------LPL---RGFDDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~-~~-~---------~~l---~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
+-.|+|||||+.|.-.|-+-++.|.+.-++. |- . .++ ....+.+...+.+..++..|+++.-....
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence 5689999999999999888888776654332 10 0 111 12567899999999999999999887888
Q ss_pred EEEEe---CCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 267 ELIKS---EEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 267 ~i~~~---~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
.++.. ++-..|++.+|-.+.+..+|++||.+
T Consensus 291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 291 KLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred cceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 87764 33488999999999999999999964
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.17 Score=52.71 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=38.4
Q ss_pred HHHHHHHHHHh-CCCEEEcCccEEEEEEeCCe-EEEEECC-C--eEEEcCEEEEecCCCcC
Q 042564 244 MRAVVARNLEG-RGINLHPRTTIKELIKSEEG-VKVITDH-G--EEIVADVVLFATGRAPN 299 (498)
Q Consensus 244 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~-~~v~~~~-g--~~i~~D~vi~a~G~~p~ 299 (498)
+.+.+.+.+++ .||+++.++.+.++..+++. ..+...+ + ..+.++.||+|+|-...
T Consensus 130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 130 VITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 34445555665 58999999999998765544 2243322 3 36889999999997654
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.051 Score=56.03 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=58.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD 280 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~ 280 (498)
.++++|+|+|.+|+.+|..|.+.|.+|+++++... +.+ +...+.+.+.|++++.+......
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~~~~------------ 65 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE------DQL-KEALEELGELGIELVLGEYPEEF------------ 65 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcchhH------------
Confidence 57999999999999999999999999999987541 223 22334466668877655333210
Q ss_pred CCeEEEcCEEEEecCCCcCCCC
Q 042564 281 HGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 281 ~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.-.+|.||.++|..|+...
T Consensus 66 ---~~~~d~vv~~~g~~~~~~~ 84 (450)
T PRK14106 66 ---LEGVDLVVVSPGVPLDSPP 84 (450)
T ss_pred ---hhcCCEEEECCCCCCCCHH
Confidence 1247999999999877764
|
|
| >PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.02 Score=57.87 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
.++.+.+-+...-.|-.+++++.|.+|..++++ ..|. .+|+++.|+.||....+-|
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~dpsy~p 289 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIGDPSYLP 289 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEEEGGGBG
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEECCccCc
Confidence 378888888888889999999999999876554 3343 4888999999998877766
|
This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A .... |
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.067 Score=53.26 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=28.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
.|+|||||..|+|.|.+-++.|.+.++++.+
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 7999999999999999999999998888754
|
|
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.02 Score=55.86 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.9
Q ss_pred CCccEEEECCChhHHHHHHHHHh----CCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN----FGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~----~g~~V~lvek 54 (498)
..|||+|+||||.|++.|..|.. ..+||.|+|.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~ 71 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDA 71 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEec
Confidence 37999999999999999999986 4579999993
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.2 Score=50.37 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=61.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC---CcEEEEeeCCCCC-------------------------CCCCHHHHHHHHHH--
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMG---STVDLLFRKELPL-------------------------RGFDDEMRAVVARN-- 251 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g---~~V~lv~~~~~~l-------------------------~~~~~~~~~~l~~~-- 251 (498)
.+|+|||+|++|+.+|..|.+.- ..|+++++.+.+. +..+.+..+++.+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999998752 1388888766321 11122233333221
Q ss_pred --------------------------------HHhCC---CEEEcCccEEEEEEe--CCeEEEEECCCeEEEcCEEEEec
Q 042564 252 --------------------------------LEGRG---INLHPRTTIKELIKS--EEGVKVITDHGEEIVADVVLFAT 294 (498)
Q Consensus 252 --------------------------------l~~~G---v~i~~~~~v~~i~~~--~~~~~v~~~~g~~i~~D~vi~a~ 294 (498)
+++.- +.++ .++...+... ..+..+...+|+...||.+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 11111 3332 2344444444 33466777889999999999999
Q ss_pred CCCcCCCC
Q 042564 295 GRAPNTKR 302 (498)
Q Consensus 295 G~~p~~~~ 302 (498)
|..+....
T Consensus 161 gh~~~~~~ 168 (474)
T COG4529 161 GHSAPPAD 168 (474)
T ss_pred cCCCCCcc
Confidence 98766553
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.24 Score=52.47 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEe-CCe-EEEE---ECCCe--EEEcCEEEEecCCCc
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKS-EEG-VKVI---TDHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~-~~v~---~~~g~--~i~~D~vi~a~G~~p 298 (498)
.+.+.+.+.+++.||+++.++.+.++..+ ++. ..+. ..+|+ .+.++.||+|||-..
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 56677777788889999999999999765 333 2332 33564 478999999999754
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.048 Score=60.03 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=30.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~ 235 (498)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 889999998874
|
|
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.3 Score=48.57 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=37.9
Q ss_pred HhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 124 LNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 124 ~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+...+...+++.||+++.++ +..++...+.+...++ ...+++|+||||||+.+
T Consensus 88 Vv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~-~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 88 LLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDG-QSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCC-ceEEecCEEEEcCCCcc
Confidence 34445566778899999987 5567565677765433 23689999999999754
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.24 Score=52.44 Aligned_cols=57 Identities=28% Similarity=0.321 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEE--E-CCCe--EEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVI--T-DHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~--~-~~g~--~i~~D~vi~a~G~~p 298 (498)
..+...+.+.+++.||++++++.+.++..++++ ..+. . .+|+ .+.++.||+|||-..
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 445566667777789999999999998766543 2232 2 4564 578999999999644
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.34 Score=52.20 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=34.0
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G~~ 297 (498)
.+++.||+++.++.+.++..+++. ..|.. .+|+ .+.++.||+|||-.
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 455678999999999998765544 33433 2454 58899999999963
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.31 Score=51.75 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecCC
Q 042564 245 RAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATGR 296 (498)
Q Consensus 245 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G~ 296 (498)
...+.+.+.+.||+++.++.++++..+++. ..+.. .+++ .+.++.||+|||-
T Consensus 139 ~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 139 LHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 334555556678999999999998876554 33332 2343 5789999999994
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.15 Score=49.93 Aligned_cols=49 Identities=12% Similarity=0.216 Sum_probs=36.8
Q ss_pred HHHHhCCcEEEEeE-EE--EEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 130 RLLSNAGVKLYEGE-GK--IVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 130 ~~~~~~gv~~~~~~-~~--~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.-+++.||+++.+. +. ..+...+.+.+++|. +++.|.+|+|+|-.|+.-
T Consensus 401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~--~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGS--ELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred HHHHhcCceeccchhhhhhhhhccceEEEecCCC--eeeeeeEEEEecCCCchh
Confidence 33456788888764 22 235667888888987 899999999999998754
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.37 Score=51.80 Aligned_cols=40 Identities=30% Similarity=0.418 Sum_probs=28.8
Q ss_pred CEEEcCccEEEEEEeCCe-EEEE---ECCCe--EEEcCEEEEecCC
Q 042564 257 INLHPRTTIKELIKSEEG-VKVI---TDHGE--EIVADVVLFATGR 296 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~-~~v~---~~~g~--~i~~D~vi~a~G~ 296 (498)
|+++.++.+.++..+++. ..+. ..+++ .+.++.||+|||-
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 889999889888765543 2222 23554 5789999999995
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.19 Score=49.27 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=28.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
++.|||.|.-||..|.-+++.|++|+.+|
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vD 30 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVD 30 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEe
Confidence 68999999999999999999999999999
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.3 Score=49.99 Aligned_cols=59 Identities=12% Similarity=0.215 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEe--CCe-EEEEEC-CCeEEEcCEEEEecC-CCcCCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKS--EEG-VKVITD-HGEEIVADVVLFATG-RAPNTKR 302 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~-~~v~~~-~g~~i~~D~vi~a~G-~~p~~~~ 302 (498)
+.+.+.+.+++.|++++++++++++..+ ++. +.+... ++..+.++.||+|+| +..|.++
T Consensus 125 l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~ 188 (432)
T TIGR02485 125 LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDW 188 (432)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHH
Confidence 4455666677889999999999998765 232 334443 345789999999999 4445543
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.032 Score=55.14 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=30.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL 237 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l 237 (498)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 58999999999999999999999999999987653
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.049 Score=54.70 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=31.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
++|+|||||..|+++|..|++.|.+|+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976544
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.43 Score=50.84 Aligned_cols=52 Identities=21% Similarity=0.154 Sum_probs=35.0
Q ss_pred HHHHHHHHh-CCCEEEcCccEEEEEEeCCe-EEE---EECCCe--EEEcCEEEEecCCC
Q 042564 246 AVVARNLEG-RGINLHPRTTIKELIKSEEG-VKV---ITDHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 246 ~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~-~~v---~~~~g~--~i~~D~vi~a~G~~ 297 (498)
+.+.+.+.+ .||+++.++.+.++..+++. ..+ ...+|+ .+.++.||+|||-.
T Consensus 141 ~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 141 HTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 334444444 58999999888888765543 222 224564 57899999999965
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.45 Score=50.88 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeC-Ce-EEEE---ECCCe--EEEcCEEEEecCCCc
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSE-EG-VKVI---TDHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~-~~v~---~~~g~--~i~~D~vi~a~G~~p 298 (498)
+...+.+.+++.||++++++.+.++..++ +. ..+. ..+|+ .+.++.||+|||-..
T Consensus 151 i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 151 ILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 44455556667889999999999987654 32 3333 23564 578999999998543
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.066 Score=56.07 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=32.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL 237 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l 237 (498)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~ 39 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPF 39 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 369999999999999999999999999999987653
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.66 Score=50.15 Aligned_cols=46 Identities=28% Similarity=0.360 Sum_probs=33.5
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecC
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATG 295 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G 295 (498)
+.+.+.||+++.++.+.++..+++. ..+.. .+|+ .+.++.||+|||
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 4455678999999999998876554 23322 4565 467999999999
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.43 Score=51.16 Aligned_cols=54 Identities=20% Similarity=0.168 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEE-eCCe-EEEE---ECCCe--EEEcCEEEEecCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIK-SEEG-VKVI---TDHGE--EIVADVVLFATGR 296 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~-~~v~---~~~g~--~i~~D~vi~a~G~ 296 (498)
.+...+.+.+++.||+++.++.+.++.. +++. ..+. ..+|+ .+.++.||+|||-
T Consensus 167 ~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 167 AMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 4445555556667889999999998776 3333 3333 24564 5789999999974
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.49 Score=50.61 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=24.6
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 204 AVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 204 v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
|+|||+|..|+-.|..+++.|.+|.++++.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 5788888888888888888888888887654
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.067 Score=53.61 Aligned_cols=35 Identities=23% Similarity=0.142 Sum_probs=32.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 47999999999999999999999999999998754
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.091 Score=52.66 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=32.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.++|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 468999999999999999999999999999987653
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.076 Score=53.68 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=33.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 468999999999999999999999999999998754
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.65 Score=49.49 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=35.0
Q ss_pred HHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeE-EE---EECCCe--EEEcCEEEEecCC
Q 042564 244 MRAVVARNLEG-RGINLHPRTTIKELIKSEEGV-KV---ITDHGE--EIVADVVLFATGR 296 (498)
Q Consensus 244 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~i~~D~vi~a~G~ 296 (498)
+...+.+.+.+ .+|+++.++.+.++..+++.+ .+ ...+|+ .+.++.||+|+|-
T Consensus 135 i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 135 MLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 33334444444 378888898898887655542 22 334664 6889999999984
|
|
| >TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.12 Score=52.01 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
...+...+.+.+++ |++++.+++|.+++.+++.+.+++.+|+.+.+|.||+|+|....
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 46677888888888 99999999999998877778888888887999999999997643
|
In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. |
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.73 Score=49.05 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=33.6
Q ss_pred HHHHHHHHh-CCCEEEcCccEEEEEEeCCeE-EE---EECCCe--EEEcCEEEEecCC
Q 042564 246 AVVARNLEG-RGINLHPRTTIKELIKSEEGV-KV---ITDHGE--EIVADVVLFATGR 296 (498)
Q Consensus 246 ~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~i~~D~vi~a~G~ 296 (498)
..+.+.+.+ .+|+++.++.+.++..+++.+ .+ ...+|+ .+.++.||+|+|-
T Consensus 136 ~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 136 HTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 334444444 478888888888887655542 22 234664 5789999999984
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.72 Score=49.23 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeC----Ce-EEEE---ECCCe--EEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSE----EG-VKVI---TDHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~----~~-~~v~---~~~g~--~i~~D~vi~a~G~~p 298 (498)
..+.+.+.+.+++.||+++.++.+.++..++ +. ..+. ..+++ .+.++.||+|||-..
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 4566677777888899999999999987654 32 3333 24554 578999999999654
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.053 Score=51.47 Aligned_cols=30 Identities=40% Similarity=0.374 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..|-|||||.||..||++++++|.+|.|.|
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~E 33 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYE 33 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEE
Confidence 469999999999999999999999999999
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.17 Score=49.26 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=29.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
-.|+|||+|..|.-+|..|.+-|.+|++++|.-
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 359999999999999999999999999999853
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.84 Score=49.11 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEe-CCe-EEEEE---CCCe--EEEcCEEEEecCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKS-EEG-VKVIT---DHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~-~~v~~---~~g~--~i~~D~vi~a~G~~ 297 (498)
+...+.+.+.+.||+++.++.+.++..+ ++. ..+.. .+|+ .+.++.||+|||--
T Consensus 189 i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 189 MLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 3444455555678899989888887655 333 33332 3564 57899999999853
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.064 Score=46.46 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=27.9
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+|.|||||..|.+.|..|++.|.+|.|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~ 29 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWG 29 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEe
Confidence 48999999999999999999999999999
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.078 Score=53.46 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=42.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC-CCCCCC-CCHHHHHHHHHHHHhCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK-ELPLRG-FDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~-~~~l~~-~~~~~~~~l~~~l~~~Gv 257 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++. +.+.+. -.-.+...-.+.|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 47999999999999999999999999999997 232222 122244445566777777
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.74 Score=49.13 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEe-CCe-EEEE---ECCCe--EEEcCEEEEecCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKS-EEG-VKVI---TDHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~-~~v~---~~~g~--~i~~D~vi~a~G~~ 297 (498)
+...+.+.+.+.||+++.++.+.++..+ ++. ..+. ..+|+ .+.++.||+|||--
T Consensus 145 i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 145 LLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 3334444455678888888888888764 333 3333 23554 57799999999853
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.15 Score=46.23 Aligned_cols=70 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD 280 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~ 280 (498)
.++++|||||.+|..-+..|.+.|.+|+++.+... ..+.+..++..++++....-...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~----------~~l~~l~~~~~i~~~~~~~~~~d------------ 66 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE----------SELTLLAEQGGITWLARCFDADI------------ 66 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC----------HHHHHHHHcCCEEEEeCCCCHHH------------
Q ss_pred CCeEEEcCEEEEecC
Q 042564 281 HGEEIVADVVLFATG 295 (498)
Q Consensus 281 ~g~~i~~D~vi~a~G 295 (498)
.-.+++||.|||
T Consensus 67 ---l~~~~lVi~at~ 78 (205)
T TIGR01470 67 ---LEGAFLVIAATD 78 (205)
T ss_pred ---hCCcEEEEECCC
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.34 Score=48.95 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=33.8
Q ss_pred HHHHHHh-CCCEEEcCccEEEEEEeCC-eE-EEEEC--CC--eEEEcCEEEEecCC
Q 042564 248 VARNLEG-RGINLHPRTTIKELIKSEE-GV-KVITD--HG--EEIVADVVLFATGR 296 (498)
Q Consensus 248 l~~~l~~-~Gv~i~~~~~v~~i~~~~~-~~-~v~~~--~g--~~i~~D~vi~a~G~ 296 (498)
|.+..++ .+|+++.+..+.++..+++ .+ .+.+. ++ ..+.++.||+|||-
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 4444444 5899999988888877766 33 44432 22 36789999999983
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.94 Score=43.63 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcC
Q 042564 247 VVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD 321 (498)
Q Consensus 247 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd 321 (498)
.+++.|.+.+|+++.+.. ++. ++..+.|...+|+ .+.+..+++|+|-+|..+.+ ....+.++.+|+....
T Consensus 115 IY~~~L~k~~V~~i~G~a--~f~-~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnI--pG~E~gidSDgff~Le 186 (478)
T KOG0405|consen 115 IYKRNLAKAAVKLIEGRA--RFV-SPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNI--PGAELGIDSDGFFDLE 186 (478)
T ss_pred HHHhhccccceeEEeeeE--EEc-CCCceEEEecCCeeEEEecceEEEEeCCccCCCCC--Cchhhccccccccchh
Confidence 355666677777776621 121 3345677777885 37899999999999988753 3333444555555443
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.2 Score=42.95 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=0.0
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC-
Q 042564 204 AVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG- 282 (498)
Q Consensus 204 v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g- 282 (498)
|+|+|+|.+|.-+|..|.+.|.+|+++.| .+ ..+.+++.|+.+.... ....-.........
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r------------~~-~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~ 62 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSR------------SP-RLEAIKEQGLTITGPD-----GDETVQPPIVISAPS 62 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEES------------HH-HHHHHHHHCEEEEETT-----EEEEEEEEEEESSHG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEc------------cc-cHHhhhheeEEEEecc-----cceecccccccCcch
Q ss_pred -eEEEcCEEEEec
Q 042564 283 -EEIVADVVLFAT 294 (498)
Q Consensus 283 -~~i~~D~vi~a~ 294 (498)
..-++|.||+|+
T Consensus 63 ~~~~~~D~viv~v 75 (151)
T PF02558_consen 63 ADAGPYDLVIVAV 75 (151)
T ss_dssp HHHSTESEEEE-S
T ss_pred hccCCCcEEEEEe
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.16 Score=51.14 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=32.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 47999999999999999999999999999997643
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.22 Score=49.08 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=57.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCCC-------C----------C----CCH------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELPL-------R----------G----FDD------------------ 242 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~l-------~----------~----~~~------------------ 242 (498)
.++.||.|+..+-+|..+.+.+ .++..+++.+.+- + . .+|
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 5789999999999999998876 7888888766420 0 0 000
Q ss_pred ------------HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe----EEEEEC----CCeEEEcCEEEEecCCCcCCCC
Q 042564 243 ------------EMRAVVARNLEGRGINLHPRTTIKELIKSEEG----VKVITD----HGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 243 ------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~----~~v~~~----~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+..+.++-..++..-.++.+.+|++|....+. ..|.+. +++++.|..|++++|..|..+.
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP~ 163 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIPE 163 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---G
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCCc
Confidence 01111222223335448889999999876542 667762 3468999999999999987754
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.072 Score=48.93 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=57.6
Q ss_pred EEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCCC-CCHHHHHHHHHH------HHhCCCEEE--cCccEEEEEEeC
Q 042564 204 AVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPLRG-FDDEMRAVVARN------LEGRGINLH--PRTTIKELIKSE 272 (498)
Q Consensus 204 v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l~~-~~~~~~~~l~~~------l~~~Gv~i~--~~~~v~~i~~~~ 272 (498)
.+|||||..|+.+|+.|+.+ ..+|.++..++-+-+- -...+.+.+++. ..+.|-.+. .+. |..+. .
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~~~--s 78 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVTWD--S 78 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhhhc--c
Confidence 57999999999999999876 4477777765532110 122233333221 001111111 111 33332 2
Q ss_pred CeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 273 EGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 273 ~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
....+.+.+|..+.++.+.+|+|.+|-..
T Consensus 79 ~ehci~t~~g~~~ky~kKOG~tg~kPklq 107 (334)
T KOG2755|consen 79 SEHCIHTQNGEKLKYFKLCLCTGYKPKLQ 107 (334)
T ss_pred ccceEEecCCceeeEEEEEEecCCCccee
Confidence 23457888999999999999999999875
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.21 Score=50.43 Aligned_cols=56 Identities=29% Similarity=0.407 Sum_probs=41.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC---CCCC-H--HHHHHHHHHHHhCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL---RGFD-D--EMRAVVARNLEGRGI 257 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l---~~~~-~--~~~~~l~~~l~~~Gv 257 (498)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+- +... . .+.....+.|++.|+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl 65 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGA 65 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCC
Confidence 369999999999999999999999999999987531 1111 1 234445666777776
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.11 Score=53.71 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
..++|+|||+|.+|+-+|..|.+.|.+|++++..+++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 3569999999999999999999999999999988864
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.4 Score=47.09 Aligned_cols=54 Identities=28% Similarity=0.398 Sum_probs=35.3
Q ss_pred HHHHHhCCCEEEcCccEEEEEEeCCe--EEEEE-CCCe--EEEcC-EEEEecC-CCcCCCC
Q 042564 249 ARNLEGRGINLHPRTTIKELIKSEEG--VKVIT-DHGE--EIVAD-VVLFATG-RAPNTKR 302 (498)
Q Consensus 249 ~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~-~~g~--~i~~D-~vi~a~G-~~p~~~~ 302 (498)
.+.+++.|+++++++.++++..++++ +.|.. .+++ .+.+. .||+|+| +.-|.++
T Consensus 220 ~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em 280 (584)
T PRK12835 220 RLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDW 280 (584)
T ss_pred HHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHH
Confidence 34455678999999999999875432 33333 2343 46787 5999997 4555554
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.072 Score=42.43 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=29.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...|+|||||..|..-+..|.+.|.+|+|+.+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~ 38 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISP 38 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 46899999999999999999999999999993
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 498 | ||||
| 3o0h_A | 484 | Crystal Structure Of Glutathione Reductase From Bar | 1e-105 | ||
| 4dna_A | 463 | Crystal Structure Of Putative Glutathione Reductase | 5e-96 | ||
| 1fea_A | 490 | Unliganded Crithidia Fasciculata Trypanothione Redu | 3e-92 | ||
| 1typ_A | 487 | Substrate Interactions Between Trypanothione Reduct | 5e-92 | ||
| 1tyt_A | 487 | Crystal And Molecular Structure Of Crithidia Fascic | 5e-92 | ||
| 2tpr_A | 490 | X-ray Structure Of Trypanothione Reductase From Cri | 3e-91 | ||
| 2jk6_A | 511 | Structure Of Trypanothione Reductase From Leishmani | 6e-90 | ||
| 2x50_A | 510 | Crystal Structure Of Trypanothione Reductase From L | 6e-90 | ||
| 2wba_A | 492 | Properties Of Trypanothione Reductase From T. Bruce | 3e-89 | ||
| 2woi_A | 495 | Trypanothione Reductase From Trypanosoma Brucei Len | 4e-89 | ||
| 2r9z_A | 463 | Glutathione Amide Reductase From Chromatium Gracile | 6e-87 | ||
| 1bzl_A | 486 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 4e-84 | ||
| 1nda_A | 491 | The Structure Of Trypanosoma Cruzi Trypanothione Re | 4e-84 | ||
| 1aog_A | 485 | Trypanosoma Cruzi Trypanothione Reductase (Oxidized | 4e-84 | ||
| 1gxf_A | 492 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 5e-84 | ||
| 2grt_A | 461 | Human Glutathione Reductase A34e, R37w Mutant, Oxid | 4e-83 | ||
| 1grt_A | 478 | Human Glutathione Reductase A34eR37W MUTANT Length | 4e-83 | ||
| 1xan_A | 461 | Human Glutathione Reductase In Complex With A Xanth | 2e-80 | ||
| 3djg_X | 477 | Catalytic Cycle Of Human Glutathione Reductase Near | 3e-80 | ||
| 1bwc_A | 478 | Structure Of Human Glutathione Reductase Complexed | 3e-80 | ||
| 2aaq_A | 479 | Crystal Structure Analysis Of The Human Glutahione | 3e-80 | ||
| 1gsn_A | 478 | Human Glutathione Reductase Modified By Dinitrosogl | 5e-79 | ||
| 1grg_A | 478 | Substrate Binding And Catalysis By Glutathione Redu | 5e-79 | ||
| 1dnc_A | 478 | Human Glutathione Reductase Modified By Diglutathio | 5e-79 | ||
| 1k4q_A | 463 | Human Glutathione Reductase Inactivated By Peroxyni | 9e-78 | ||
| 2cfy_A | 521 | Crystal Structure Of Human Thioredoxin Reductase 1 | 7e-77 | ||
| 2zz0_A | 513 | Crystal Structure Of Human Thioredoxin Reductase I | 8e-77 | ||
| 3qfa_A | 519 | Crystal Structure Of The Human Thioredoxin Reductas | 9e-77 | ||
| 2j3n_A | 519 | X-Ray Structure Of Human Thioredoxin Reductase 1 Le | 9e-77 | ||
| 2hqm_A | 479 | Crystal Structure Of Glutathione Reductase Glr1 Fro | 2e-76 | ||
| 1h6v_A | 499 | Mammalian Thioredoxin Reductase Length = 499 | 6e-76 | ||
| 3ean_A | 499 | Crystal Structure Of Recombinant Rat Selenoprotein | 6e-76 | ||
| 1ger_A | 450 | The Structure Of Glutathione Reductase From Escheri | 1e-73 | ||
| 3dgz_A | 488 | Crystal Structure Of Mouse Mitochondrial Thioredoxi | 9e-72 | ||
| 1zdl_A | 517 | Crystal Structure Of Mouse Thioredoxin Reductase Ty | 1e-71 | ||
| 2v6o_A | 596 | Structure Of Schistosoma Mansoni Thioredoxin-Glutat | 6e-71 | ||
| 3h4k_A | 598 | Crystal Structure Of The Wild Type Thioredoxin Glut | 6e-71 | ||
| 2x8c_A | 598 | Thioredoxin Glutathione Reductase From Schistosoma | 7e-71 | ||
| 1ges_A | 450 | Anatomy Of An Engineered Nad-Binding Site Length = | 8e-70 | ||
| 3dh9_A | 482 | Crystal Structure Of Drosophila Thioredoxin Reducta | 2e-69 | ||
| 2nvk_X | 488 | Crystal Structure Of Thioredoxin Reductase From Dro | 2e-69 | ||
| 3dgh_A | 483 | Crystal Structure Of Drosophila Thioredoxin Reducta | 3e-69 | ||
| 4b1b_A | 542 | Crystal Structure Of Plasmodium Falciparum Oxidised | 2e-63 | ||
| 1onf_A | 500 | Crystal Structure Of Plasmodium Falciparum Glutathi | 2e-61 | ||
| 1ebd_A | 455 | Dihydrolipoamide Dehydrogenase Complexed With The B | 9e-53 | ||
| 1dxl_A | 470 | Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy | 7e-49 | ||
| 3rnm_A | 495 | The Crystal Structure Of The Subunit Binding Of Hum | 3e-48 | ||
| 1zy8_A | 474 | The Crystal Structure Of Dihydrolipoamide Dehydroge | 4e-48 | ||
| 1zmc_A | 474 | Crystal Structure Of Human Dihydrolipoamide Dehydro | 5e-48 | ||
| 1lpf_A | 477 | Three-Dimensional Structure Of Lipoamide Dehydrogen | 1e-47 | ||
| 2eq6_A | 464 | Crystal Structure Of Lipoamide Dehydrogenase From T | 2e-47 | ||
| 3lad_A | 476 | Refined Crystal Structure Of Lipoamide Dehydrogenas | 7e-46 | ||
| 2eq7_A | 455 | Crystal Structure Of Lipoamide Dehydrogenase From T | 4e-44 | ||
| 3urh_A | 491 | Crystal Structure Of A Dihydrolipoamide Dehydrogena | 3e-41 | ||
| 1jeh_A | 478 | Crystal Structure Of Yeast E3, Lipoamide Dehydrogen | 6e-40 | ||
| 1zk7_A | 467 | Crystal Structure Of Tn501 Mera Length = 467 | 4e-37 | ||
| 1lvl_A | 458 | The Refined Structure Of Pseudomonas Putida Lipoami | 4e-36 | ||
| 3ii4_A | 466 | Structure Of Mycobacterial Lipoamide Dehydrogenase | 7e-36 | ||
| 2qae_A | 468 | Crystal Structure Analysis Of Trypanosoma Cruzi Lip | 8e-36 | ||
| 2a8x_A | 464 | Crystal Structure Of Lipoamide Dehydrogenase From M | 1e-35 | ||
| 3l8k_A | 466 | Crystal Structure Of A Dihydrolipoyl Dehydrogenase | 2e-33 | ||
| 1ojt_A | 482 | Structure Of Dihydrolipoamide Dehydrogenase Length | 7e-32 | ||
| 1bhy_A | 482 | Low Temperature Middle Resolution Structure Of P64k | 9e-32 | ||
| 1xdi_A | 499 | Crystal Structure Of Lpda (Rv3303c) From Mycobacter | 2e-28 | ||
| 3ic9_A | 492 | The Structure Of Dihydrolipoamide Dehydrogenase Fro | 3e-20 | ||
| 1mo9_A | 523 | Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct | 3e-18 | ||
| 2bc1_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 2e-16 | ||
| 2bc0_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 2e-16 | ||
| 3iwa_A | 472 | Crystal Structure Of A Fad-Dependent Pyridine Nucle | 2e-15 | ||
| 3kd9_A | 449 | Crystal Structure Of Pyridine Nucleotide Disulfide | 1e-14 | ||
| 1f8w_A | 447 | Crystal Structure Of Nadh Peroxidase Mutant: R303m | 8e-12 | ||
| 2cdu_A | 452 | The Crystal Structure Of Water-Forming Nad(P)h Oxid | 1e-11 | ||
| 1nhr_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 2e-11 | ||
| 1nhs_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 2e-11 | ||
| 1nhp_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 3e-11 | ||
| 1joa_A | 447 | Nadh Peroxidase With Cysteine-Sulfenic Acid Length | 3e-11 | ||
| 1nhq_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 3e-11 | ||
| 3ntd_A | 565 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 4e-10 | ||
| 2v3a_A | 384 | Crystal Structure Of Rubredoxin Reductase From Pseu | 1e-08 | ||
| 3nta_A | 574 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 2e-08 | ||
| 3nt6_A | 574 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 2e-08 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 6e-08 | ||
| 3fg2_P | 404 | Crystal Structure Of Ferredoxin Reductase For The C | 4e-07 | ||
| 2gr3_A | 408 | Crystal Structure Of Ferredoxin Reductase, Bpha4 (O | 5e-07 | ||
| 1d7y_A | 408 | Crystal Structure Of Nadh-Dependent Ferredoxin Redu | 6e-07 | ||
| 3oc4_A | 452 | Crystal Structure Of A Pyridine Nucleotide-Disulfid | 6e-07 | ||
| 3cgb_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 1e-06 | ||
| 1trb_A | 320 | Convergent Evolution Of Similar Function In Two Str | 2e-06 | ||
| 1tdf_A | 316 | Crystal Structure Of Escherichia Coli Thioredoxin R | 2e-06 | ||
| 4eqs_A | 437 | Crystal Structure Of The Y419f Mutant Of Staphyloco | 3e-06 | ||
| 4eqr_A | 437 | Crystal Structure Of The Y361f Mutant Of Staphyloco | 3e-06 | ||
| 4eqw_A | 437 | Crystal Structure Of The Y361f, Y419f Mutant Of Sta | 3e-06 | ||
| 4emw_A | 436 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 3e-06 | ||
| 4em3_A | 437 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 3e-06 | ||
| 1yqz_A | 438 | Structure Of Coenzyme A-Disulfide Reductase From St | 3e-06 | ||
| 4eqx_A | 437 | Crystal Structure Of The C43s Mutant Of Staphylococ | 3e-06 | ||
| 3ef6_A | 410 | Crystal Structure Of Toluene 2,3-Dioxygenase Reduct | 3e-06 | ||
| 1f6m_A | 320 | Crystal Structure Of A Complex Between Thioredoxin | 4e-06 | ||
| 1cl0_A | 320 | Crystal Structure Of Reduced Thioredoxin Reductase | 4e-06 | ||
| 1tde_A | 316 | Crystal Structure Of Escherichia Coli Thioredoxin R | 4e-06 | ||
| 3icr_A | 588 | Crystal Structure Of Oxidized Bacillus Anthracis Co | 6e-06 | ||
| 3f8d_A | 323 | Structure Of Sulfolobus Solfataricus Thioredoxin Re | 1e-05 | ||
| 3f8p_A | 323 | Structure Of Sulfolobus Solfataricus Trxr-B3 Length | 2e-05 | ||
| 4a5l_A | 314 | Crystal Structure Of The Thioredoxin Reductase From | 2e-05 | ||
| 3lxd_A | 415 | Crystal Structure Of Ferredoxin Reductase Arr From | 3e-05 | ||
| 3cty_A | 319 | Crystal Structure Of T. Acidophilum Thioredoxin Red | 3e-05 | ||
| 2q7v_A | 325 | Crystal Structure Of Deinococcus Radiodurans Thiore | 7e-05 | ||
| 1xhc_A | 367 | Nadh Oxidase /nitrite Reductase From Pyrococcus Fur | 9e-05 | ||
| 3itj_A | 338 | Crystal Structure Of Saccharomyces Cerevisiae Thior | 1e-04 | ||
| 3d8x_A | 326 | Crystal Structure Of Saccharomyces Cerevisiae Nadph | 1e-04 | ||
| 4gcm_A | 312 | Crystal Structure Of A Thioredoxine Reductase (Trxb | 1e-04 |
| >pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484 | Back alignment and structure |
|
| >pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463 | Back alignment and structure |
|
| >pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490 | Back alignment and structure |
|
| >pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487 | Back alignment and structure |
|
| >pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487 | Back alignment and structure |
|
| >pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490 | Back alignment and structure |
|
| >pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511 | Back alignment and structure |
|
| >pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510 | Back alignment and structure |
|
| >pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492 | Back alignment and structure |
|
| >pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495 | Back alignment and structure |
|
| >pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463 | Back alignment and structure |
|
| >pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486 | Back alignment and structure |
|
| >pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491 | Back alignment and structure |
|
| >pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485 | Back alignment and structure |
|
| >pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492 | Back alignment and structure |
|
| >pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461 | Back alignment and structure |
|
| >pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478 | Back alignment and structure |
|
| >pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461 | Back alignment and structure |
|
| >pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477 | Back alignment and structure |
|
| >pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478 | Back alignment and structure |
|
| >pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479 | Back alignment and structure |
|
| >pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By Dinitrosoglutathione Length = 478 | Back alignment and structure |
|
| >pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478 | Back alignment and structure |
|
| >pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478 | Back alignment and structure |
|
| >pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521 | Back alignment and structure |
|
| >pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513 | Back alignment and structure |
|
| >pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519 | Back alignment and structure |
|
| >pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519 | Back alignment and structure |
|
| >pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479 | Back alignment and structure |
|
| >pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499 | Back alignment and structure |
|
| >pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499 | Back alignment and structure |
|
| >pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450 | Back alignment and structure |
|
| >pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488 | Back alignment and structure |
|
| >pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517 | Back alignment and structure |
|
| >pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596 | Back alignment and structure |
|
| >pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598 | Back alignment and structure |
|
| >pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598 | Back alignment and structure |
|
| >pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450 | Back alignment and structure |
|
| >pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482 | Back alignment and structure |
|
| >pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488 | Back alignment and structure |
|
| >pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483 | Back alignment and structure |
|
| >pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542 | Back alignment and structure |
|
| >pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500 | Back alignment and structure |
|
| >pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455 | Back alignment and structure |
|
| >pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470 | Back alignment and structure |
|
| >pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495 | Back alignment and structure |
|
| >pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474 | Back alignment and structure |
|
| >pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474 | Back alignment and structure |
|
| >pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477 | Back alignment and structure |
|
| >pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 Length = 464 | Back alignment and structure |
|
| >pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476 | Back alignment and structure |
|
| >pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455 | Back alignment and structure |
|
| >pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491 | Back alignment and structure |
|
| >pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase Length = 478 | Back alignment and structure |
|
| >pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467 | Back alignment and structure |
|
| >pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458 | Back alignment and structure |
|
| >pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound To A Triazaspirodimethoxybenzoyl Inhibitor Length = 466 | Back alignment and structure |
|
| >pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468 | Back alignment and structure |
|
| >pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Mycobacterium Tuberculosis Length = 464 | Back alignment and structure |
|
| >pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466 | Back alignment and structure |
|
| >pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase Length = 482 | Back alignment and structure |
|
| >pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From Masc Data Length = 482 | Back alignment and structure |
|
| >pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium Tuberculosis Length = 499 | Back alignment and structure |
|
| >pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From Colwellia Psychrerythraea 34h. Length = 492 | Back alignment and structure |
|
| >pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523 | Back alignment and structure |
|
| >pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490 | Back alignment and structure |
|
| >pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490 | Back alignment and structure |
|
| >pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472 | Back alignment and structure |
|
| >pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide Oxidoreductase From Pyrococcus Horikoshii Length = 449 | Back alignment and structure |
|
| >pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447 | Back alignment and structure |
|
| >pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452 | Back alignment and structure |
|
| >pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447 | Back alignment and structure |
|
| >pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565 | Back alignment and structure |
|
| >pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384 | Back alignment and structure |
|
| >pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574 | Back alignment and structure |
|
| >pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404 | Back alignment and structure |
|
| >pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408 | Back alignment and structure |
|
| >pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408 | Back alignment and structure |
|
| >pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452 | Back alignment and structure |
|
| >pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two Structurally Divergent Enzymes Length = 320 | Back alignment and structure |
|
| >pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316 | Back alignment and structure |
|
| >pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436 | Back alignment and structure |
|
| >pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437 | Back alignment and structure |
|
| >pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438 | Back alignment and structure |
|
| >pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410 | Back alignment and structure |
|
| >pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 320 | Back alignment and structure |
|
| >pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From Escherichia Coli Length = 320 | Back alignment and structure |
|
| >pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316 | Back alignment and structure |
|
| >pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588 | Back alignment and structure |
|
| >pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase Mutant C147a Length = 323 | Back alignment and structure |
|
| >pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3 Length = 323 | Back alignment and structure |
|
| >pdb|4A5L|A Chain A, Crystal Structure Of The Thioredoxin Reductase From Entamoeba Histolytica Length = 314 | Back alignment and structure |
|
| >pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415 | Back alignment and structure |
|
| >pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase Length = 319 | Back alignment and structure |
|
| >pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin Reductase Length = 325 | Back alignment and structure |
|
| >pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367 | Back alignment and structure |
|
| >pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin Reductase 1 (trr1) Length = 338 | Back alignment and structure |
|
| >pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph Dependent Thioredoxin Reductase 1 Length = 326 | Back alignment and structure |
|
| >pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 721 bits (1864), Expect = 0.0
Identities = 203/483 (42%), Positives = 283/483 (58%), Gaps = 18/483 (3%)
Query: 8 DGELSQPNQEEQTH--FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIG 65
G L Q + FDFDLFVIG+GSGGVRAAR + G +V I E
Sbjct: 9 MGTLEAQTQGPGSMGSFDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE----------Y 58
Query: 66 GVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLN 125
+GGTCVIRGCVPKK+ Y + + E + +GW+ + F+W+KL+ K EI RL
Sbjct: 59 RIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADP-IFNWEKLVAAKNKEISRLE 117
Query: 126 GIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPG 184
G+Y+ L N+ V +YE V + +E++ + G + SA+ ILIATG++ I G
Sbjct: 118 GLYREGLQNSNVHIYESRAVFVDEHTLELS-VTGER--ISAEKILIATGAKIVSNSAIKG 174
Query: 185 QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEM 244
+L +TS+E LE+LPK V++GGGYI VEFA+I+ G+G LL R +L LR FD ++
Sbjct: 175 SDLCLTSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDL 234
Query: 245 RAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLN 304
R ++ + +GI++ T+ ++ +E V+ +G+ I AD V+ ATGR PNT L
Sbjct: 235 RQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLG 294
Query: 305 LKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPC 364
L+ GV+V++ GAV VDE TNV IWAVGDVT + LTPVA+ + CF K F
Sbjct: 295 LERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENTST 354
Query: 365 KPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKL 424
PDY + AVF P + VGLSEE A+ + + ++ + F PMRN +SG EK MKL
Sbjct: 355 TPDYDLITTAVFSQPEIGTVGLSEEDALHRY-KRVEIYRTVFRPMRNVLSGSPEKMFMKL 413
Query: 425 VVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVT 484
VVD E+ V+GA + G A EI Q I ++LK TK FD T+ +HP+ +EE VTM +
Sbjct: 414 VVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTMYKPS 473
Query: 485 RRV 487
Sbjct: 474 YVY 476
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 712 bits (1840), Expect = 0.0
Identities = 191/492 (38%), Positives = 277/492 (56%), Gaps = 17/492 (3%)
Query: 22 FDFDLFVIGAGSGGVRAARFSAN-FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKK 80
FDL VIGAGSGG+ A +A +G +V + ++ +GGTCV GCVPKK
Sbjct: 6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQT-SHGPPFYAALGGTCVNVGCVPKK 64
Query: 81 ILVYGASFGGELEDARSYGWEV-HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVK 138
++V GA + L ++ +GWE + +WKKL+ K + +L +N Y+ + ++ G+
Sbjct: 65 LMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLD 124
Query: 139 LYEGEGKIVGPNEVEVTQL----DGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEA 194
+ G G + N V V + K A HIL+ATGS Q IPG E I+S+EA
Sbjct: 125 FFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIEHCISSNEA 184
Query: 195 LSLEELPKRAVVLGGGYIAVEFASIWRGM---GSTVDLLFRKELPLRGFDDEMRAVVARN 251
L E P+R + +GGG+I+VEFA I+ G V L +R L LRGFD+ +R V +
Sbjct: 185 FYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQ 244
Query: 252 LEGRGINLHPRTTIKELIKSEEGVKVIT-DHGEEIVADVVLFATGRAPNTKRLNLKAVGV 310
L GI + ++ + +G K +T + G+ + DVV+ A GR P T L L VGV
Sbjct: 245 LTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGV 304
Query: 311 EVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRD 370
++ G V+VDE SRTNVP+I+A+GD+T+R+ LTPVA+ EG TVFG +P K D+
Sbjct: 305 KLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTR 364
Query: 371 VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT-VMKLVVDAE 429
V AVF IPP+ GL EE A ++ + V+ SSF P+ + ISG + K V K+V +
Sbjct: 365 VASAVFSIPPIGTCGLIEEVAAKEF-EKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHS 423
Query: 430 TEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAA 489
VLG + G APEI+Q + V L+ A + F +T+G+HP+SAEE +MR+ +
Sbjct: 424 DGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYVK 483
Query: 490 ASS---NPKTNL 498
P +NL
Sbjct: 484 GEKMEKLPDSNL 495
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 711 bits (1837), Expect = 0.0
Identities = 186/488 (38%), Positives = 280/488 (57%), Gaps = 14/488 (2%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANF-GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKK 80
+DL VIGAGSGG+ A +A+ +V + +L +GGTCV GCVPKK
Sbjct: 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK-HHGPPHYAALGGTCVNVGCVPKK 60
Query: 81 ILVYGASFGGELEDARSYGWEVH-EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVK 138
++V GA++ + ++ +GWE+ E + +WK L+ K + +N Y+ + ++ G+
Sbjct: 61 LMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT 120
Query: 139 LYEGEGKIVGPNEVEVTQLDGTKLS----YSAKHILIATGSRAQRAPIPGQELAITSDEA 194
++G G + + V V + + ++IL+ATGS Q I G +L ITS+EA
Sbjct: 121 FHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGDDLCITSNEA 180
Query: 195 LSLEELPKRAVVLGGGYIAVEFASIWRG---MGSTVDLLFRKELPLRGFDDEMRAVVARN 251
L+E PKRA+ +GGGYI++EFA I+ G VDL +R ++ LRGFD E+R +
Sbjct: 181 FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQ 240
Query: 252 LEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGV 310
L GIN+ ++ K+ +G V+ + G E DVV+ A GR P ++ L L+ GV
Sbjct: 241 LRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGV 300
Query: 311 EVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRD 370
EV + GA+KVD S+TNV +I+A+GDVT+R+ LTPVA+ EG F TVF +P D+
Sbjct: 301 EVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTK 360
Query: 371 VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVM-KLVVDAE 429
V CAVF IPP+ V G EE A ++ + V+ SSF P+ + ISG K M ++V +
Sbjct: 361 VACAVFSIPPMGVCGYVEEDAAKKY-DQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHA 419
Query: 430 TEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAA 489
+VLG M G +PEI+Q +A+ LK GA + F +T+G+HP+SAEE +MR+
Sbjct: 420 DGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAYFYEK 479
Query: 490 ASSNPKTN 497
K +
Sbjct: 480 GKRVEKID 487
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 708 bits (1829), Expect = 0.0
Identities = 205/475 (43%), Positives = 288/475 (60%), Gaps = 17/475 (3%)
Query: 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPK 79
+ FD+DLFVIG GSGGVR+ R +A G KV I E GGTCVIRGCVPK
Sbjct: 2 SAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE----------FRYGGTCVIRGCVPK 51
Query: 80 KILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKL 139
K+ VY + F EDA +GW V E FDW KL+ K EI RL G+Y++ L+NAG ++
Sbjct: 52 KLYVYASQFAEHFEDAAGFGWTVGES-RFDWAKLVAAKEQEIARLEGLYRKGLANAGAEI 110
Query: 140 YEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLE 198
+ ++ GPN V++ T +A+ I+IA G +PG EL ITS+EA L
Sbjct: 111 LDTRAELAGPNTVKLLASGKT---VTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLP 167
Query: 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258
LP+ ++ GGGYIAVEFA+I+ G+G L++R + L FD +MR + +E +GI
Sbjct: 168 ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIR 227
Query: 259 LHPRTTIKELIKSEEGVKVI-TDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGA 317
+ I+ + +G +V T EIVAD V+ A GR PNT L L+A GV ++ GA
Sbjct: 228 ILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGA 287
Query: 318 VKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFC 377
+ VD SRT+ P I+A+GDVT+R+ LTPVA+ E CF +T + P PD+ + AVF
Sbjct: 288 IIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFS 347
Query: 378 IPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGAS 437
P + VG++EE+A + +I V+ + F PM+ T+SGR+EKT+MKLVV+A KV+GA
Sbjct: 348 QPEIGTVGITEEEAARKF-QEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAH 406
Query: 438 MCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASS 492
+ G +A E+ Q + ++L+ G TK FD T+ +HP++AEE VTM + RV
Sbjct: 407 ILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRNGER 461
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 708 bits (1830), Expect = 0.0
Identities = 176/478 (36%), Positives = 261/478 (54%), Gaps = 24/478 (5%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+D VIG GSGGV +AR +A++GAK + E +GGTCV GCVPKK+
Sbjct: 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEA----------KALGGTCVNVGCVPKKV 59
Query: 82 LVYGASFGGELEDARSYGWEVH-----EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAG 136
+ Y + + A YG + E + F+W + QK+ + RLNGIY++ L
Sbjct: 60 MWYASDLATRVSHANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEK 119
Query: 137 VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR-APIPGQELAITSDEAL 195
V + G + VEV + D T YSA HIL+ATG +A IPG EL SD
Sbjct: 120 VDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGTDSDGFF 179
Query: 196 SLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255
LEE PK+ VV+G GYI +E A ++ G+GS L+ R E LR FD+ ++ + +
Sbjct: 180 RLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKE 239
Query: 256 GINLHPRTTIKELIKSEEG--VKVITDHGEEIV-ADVVLFATGRAPNTKRLNLKAVGVEV 312
GIN+H + I ++ K+ E +K+ + + I D +++ GR + + + VG+++
Sbjct: 240 GINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLG-MGSENVGIKL 298
Query: 313 DQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPC---KPDYR 369
+ + DE TNVP+I+++GDV ++ LTPVA+ G + +FG + K DY
Sbjct: 299 NSHDQIIADEYQNTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYE 358
Query: 370 DVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDA 428
+VP +F P +G+SE++AIE+ GK +I V+ S F M + + T K+V
Sbjct: 359 NVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAG 418
Query: 429 ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRR 486
EKV+G + G + EI+QG VA+K GATKA FD+ V IHP+SAEE VTMR
Sbjct: 419 PNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEELVTMRGSHHH 476
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 702 bits (1815), Expect = 0.0
Identities = 182/482 (37%), Positives = 263/482 (54%), Gaps = 28/482 (5%)
Query: 14 PNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVI 73
P +D VIG GSGG+ +AR +A GA+ + E +GGTCV
Sbjct: 11 PPPAAGAVASYDYLVIGGGSGGLASARRAAELGARAAVVES----------HKLGGTCVN 60
Query: 74 RGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLS 133
GCVPKK++ A + D YG+ E F+W+ + +K+ + RLN IY+ L+
Sbjct: 61 VGCVPKKVMWNTAVHSEFMHDHADYGFPSCEG-KFNWRVIKEKRDAYVSRLNAIYQNNLT 119
Query: 134 NAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR---APIPGQELAIT 190
+ +++ G + + + G K Y+A HILIATG + IPG L IT
Sbjct: 120 KSHIEIIRGHAAFTSDPKPTIE-VSGKK--YTAPHILIATGGMPSTPHESQIPGASLGIT 176
Query: 191 SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVAR 250
SD LEELP R+V++G GYIAVE A I +GS L+ R + LR FD +
Sbjct: 177 SDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTE 236
Query: 251 NLEGRGINLHPRTTIKELIKSEEGVKVITDHGEE---------IVADVVLFATGRAPNTK 301
LE G+ + + +KE+ K+ G++V D +L+A GR PNTK
Sbjct: 237 ELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK 296
Query: 302 RLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGG 361
L+L +G++ D G + VDE TNV I+AVGDV + LTPVA+ G A +F
Sbjct: 297 DLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY 356
Query: 362 QP-CKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQEK 419
+ K DY ++P VF PP+ VGL+E++AI + G ++ +++SF PM + ++ R+ K
Sbjct: 357 KEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTK 416
Query: 420 TVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479
VMK+V + EKV+G M G E++QG AVA+K GATKA FD+TV IHP+S+EE VT
Sbjct: 417 CVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVT 476
Query: 480 MR 481
+R
Sbjct: 477 LR 478
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 700 bits (1809), Expect = 0.0
Identities = 168/478 (35%), Positives = 251/478 (52%), Gaps = 14/478 (2%)
Query: 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVP 78
Q +D+DL VIG GS G+ A+ + GA+V + + GVGGTCV GC+P
Sbjct: 5 QGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIP 64
Query: 79 KKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVK 138
KK++ + G + +A +YGW V +KI DW KL+Q + I +N + + L + V+
Sbjct: 65 KKLMHQASLLGEAVHEAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVE 124
Query: 139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSL 197
G G V + + G + + +A+ +IA G R + IPG E ITSD+ SL
Sbjct: 125 YINGLGSFVDSHTLLAKLKSGER-TITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSL 183
Query: 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257
+ P + +V+G GYI +E A +G+G ++ R + LRGFD +M +VA ++E RGI
Sbjct: 184 DREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRGFDQQMAELVAASMEERGI 242
Query: 258 NLHPRTTIKELIKSEEGVKVIT------DHGEEIVADVVLFATGRAPNTKRLNLKAVGVE 311
+T + K ++G ++ E V D VL+A GR LNL GV
Sbjct: 243 PFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVT 302
Query: 312 VDQTGAVKVDENSRTNVPSIWAVGDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDYRD 370
V + + VD TNV +I+AVGD+ + LTPVA++ G A+ ++GG + DY+D
Sbjct: 303 VQK-DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKD 361
Query: 371 VPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQEK-TVMKLVVDA 428
V VF + VGLSEE A++Q G +I VF + P I + + +K V +
Sbjct: 362 VATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAER 421
Query: 429 ET-EKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTR 485
++V G GP A E++QG A ALK G T +TVGIHP++AEEF + R
Sbjct: 422 HGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLAITKR 479
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 696 bits (1800), Expect = 0.0
Identities = 181/469 (38%), Positives = 259/469 (55%), Gaps = 18/469 (3%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
FDL IG GSGG+ A +A FG +V + E +GGTCV GCVPKK+
Sbjct: 3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIES----------KALGGTCVNVGCVPKKV 52
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ Y + + DA +G + DW +L+ + I +N + + G+ +
Sbjct: 53 MWYASHLAEAVRDAPGFGVQASGG-TLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVD 111
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELP 201
G + V + +EV +G + SA HI+IATG R +PG EL ITSD +L++ P
Sbjct: 112 GHARFVDAHTIEV---EGQR--LSADHIVIATGGRPIVPRLPGAELGITSDGFFALQQQP 166
Query: 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261
KR ++G GYI +E A + R GS V ++ ++ L FD + A +A N+ +GI H
Sbjct: 167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHL 226
Query: 262 RTTIKELIKSEEGVKVITDHGEEIV-ADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320
+ L + +G ++ G + D V++A GRAPNT+ L L+A G+EV G V
Sbjct: 227 EFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPT 286
Query: 321 DENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQP-CKPDYRDVPCAVFCIP 379
D TNVP ++A+GD+T R LTPVA+ G A+ +F GQ K DY ++P VF P
Sbjct: 287 DAYQNTNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHP 346
Query: 380 PLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMC 439
PLS VGLSE +A E+ + V+ +SF PMR ++ KT MKLV ++V+G +
Sbjct: 347 PLSKVGLSEPEARERLGDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVI 406
Query: 440 GPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVA 488
G A E++QG AVA+K GATKA FD+TV IHP SAEE VT++ RR
Sbjct: 407 GDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELVTLKEPVRRPG 455
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 698 bits (1804), Expect = 0.0
Identities = 177/499 (35%), Positives = 277/499 (55%), Gaps = 17/499 (3%)
Query: 2 ARKMLNDGELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISS 61
+ ++ G ++ +D+DL +IG GSGG+ AA+ +A +G KV + + P
Sbjct: 11 SSGLVPRGSHMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFV-TPTPL 69
Query: 62 EVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEI 121
G+GGTCV GC+PKK++ A G L+D+R+YGW+V E + DW ++++ + I
Sbjct: 70 GTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHI 129
Query: 122 LRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181
LN Y+ L V G+ +GP+ ++ T G + YSA+ LIATG R +
Sbjct: 130 GSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLG 189
Query: 182 IPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF 240
IPG +E I+SD+ SL P + +V+G Y+A+E A G+G V ++ R + LRGF
Sbjct: 190 IPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGF 248
Query: 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG------VKVITDHGEE---IVADVVL 291
D +M + ++E GI + ++ + E G V + + EE + V+
Sbjct: 249 DQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVM 308
Query: 292 FATGRAPNTKRLNLKAVGVEVDQ-TGAVKVDENSRTNVPSIWAVGDV-TNRMNLTPVALM 349
A GR T+++ L+ VGV++++ TG + V + +TNVP I+A+GD+ +++ LTPVA+
Sbjct: 309 LAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQ 368
Query: 350 EGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNP 408
G A+ ++ G K DY +VP VF GLSEE+A+E+ G+ +I V+ S F P
Sbjct: 369 AGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWP 428
Query: 409 MRNTISGR-QEKTVMKLVVDA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDST 466
+ TI R K K++ + + E+V+G + GP A E+ QG A ALKCG TK Q DST
Sbjct: 429 LEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDST 488
Query: 467 VGIHPSSAEEFVTMRSVTR 485
+GIHP AE F T+ R
Sbjct: 489 IGIHPVCAEVFTTLSVTKR 507
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 691 bits (1787), Expect = 0.0
Identities = 165/464 (35%), Positives = 245/464 (52%), Gaps = 20/464 (4%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+D IG GSGG+ + +A +G K + E +GGTCV GCVPKK+
Sbjct: 3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEA----------KELGGTCVNVGCVPKKV 52
Query: 82 LVYGASFGGELED-ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLY 140
+ + A + YG++ F+W+ L+ +T I R++ Y+ +L V +
Sbjct: 53 MWHAAQIREAIHMYGPDYGFDTTIN-KFNWETLIASRTAYIDRIHTSYENVLGKNNVDVI 111
Query: 141 EGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEEL 200
+G + V +EV +G +A HILIATG R IPG E I SD +L L
Sbjct: 112 KGFARFVDAKTLEV---NGET--ITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPAL 166
Query: 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260
P+R V+G GYI VE + G+G+ L + PL FD + + + G LH
Sbjct: 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLH 226
Query: 261 PRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319
K ++K+ +G + + + G D +++A GR P +NL+A GV+ ++ G +
Sbjct: 227 TNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIV 286
Query: 320 VDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKP-DYRDVPCAVFCI 378
VD+ TN+ I+AVGD T + LTPVA+ G ++ +F +P + DY ++P VF
Sbjct: 287 VDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSH 346
Query: 379 PPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGAS 437
PP+ VGL+E QA EQ G + V+ SSF M ++ ++ MKLV EK++G
Sbjct: 347 PPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIH 406
Query: 438 MCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481
G E++QG AVALK GATK FD+TV IHP++AEEFVTMR
Sbjct: 407 GIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR 450
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 693 bits (1790), Expect = 0.0
Identities = 164/478 (34%), Positives = 245/478 (51%), Gaps = 15/478 (3%)
Query: 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKK 80
FDL VIG GSGG+ A+ +A G KV + + P G+GGTCV GC+PKK
Sbjct: 4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADY-VEPSPRGTKWGLGGTCVNVGCIPKK 62
Query: 81 ILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLY 140
++ A GG + DA YGWEV + + +WK + + + + LN ++ L + VK +
Sbjct: 63 LMHQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYF 122
Query: 141 EGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPG-QELAITSDEALSLE 198
+ V + V G SA+HI+IATG R + + G E ITSD+ L+
Sbjct: 123 NIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLK 182
Query: 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258
E P + +V+G Y+A+E A G+G ++ R +PLRGFD +M ++V ++E G
Sbjct: 183 ESPGKTLVVGASYVALECAGFLTGIGLDTTVMMR-SIPLRGFDQQMSSLVTEHMESHGTQ 241
Query: 259 LHPRTTIKELIKSEEGVKVIT------DHGEEIVADVVLFATGRAPNTKRLNLKAVGVEV 312
+ K +T + D VL+A GR P T+ LNL+ G+
Sbjct: 242 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGIST 301
Query: 313 D-QTGAVKVDENSRTNVPSIWAVGDVTN-RMNLTPVALMEGTCFAKTVFGGQPCKPDYRD 370
+ + + VD T+VP I+A+GDV R LTP A+ G A+ +FG DY +
Sbjct: 302 NPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSN 361
Query: 371 VPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQ-EKTVMKLVVDA 428
VP VF VGLSEE+A+ G+ + V+ + + P+ T++ R + +K+V
Sbjct: 362 VPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMR 421
Query: 429 ET-EKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTR 485
E + VLG GP A E+ QG A+ +KCGA+ AQ TVGIHP+ +EE V + R
Sbjct: 422 EPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHISKR 479
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 686 bits (1773), Expect = 0.0
Identities = 171/501 (34%), Positives = 264/501 (52%), Gaps = 23/501 (4%)
Query: 4 KMLNDGELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEV 63
K ++ EL+ E + +D+DL VIG GSGG+ A + +A +GAK + + P
Sbjct: 90 KYYSNDELAGIVNE--SKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV-EPTPIGT 146
Query: 64 IGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHE-KIDFDWKKLLQKKTDEIL 122
G+GGTCV GC+PKK++ LEDA +GW + KI +W +++ I
Sbjct: 147 TWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIG 206
Query: 123 RLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182
LN YK L + V +G+++ P+EV++T + + + I++ATG R + I
Sbjct: 207 SLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEI 266
Query: 183 PG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFD 241
PG E ITSD+ SL P + +V+G Y+A+E A +G V ++ R LRGFD
Sbjct: 267 PGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSI-LLRGFD 325
Query: 242 DEMRAVVARNLEGRGINLHPRTTIKELI--------KSEEGVKVITDH-----GEEIVAD 288
+M V +E G+ E+ ++ G+ ++ H E +
Sbjct: 326 QQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFE 385
Query: 289 VVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT-NRMNLTPVA 347
V+FA GR P ++ + VGV++D+ G V ++ +T V +++A+GD+ + LTPVA
Sbjct: 386 TVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVA 445
Query: 348 LMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSF 406
+ G A+ +F G DY +V VF GLSEE AIE+ G DI V+ S+F
Sbjct: 446 IQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNF 505
Query: 407 NPMRNTISGRQEKT-VMKLVVD-AETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFD 464
P+ T++ R++ MKLV ++ +VLG + GP A EI QG AVA+K GATKA FD
Sbjct: 506 KPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFD 565
Query: 465 STVGIHPSSAEEFVTMRSVTR 485
T+GIHP+ +E F T+ +
Sbjct: 566 RTIGIHPTCSETFTTLHVTKK 586
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 642 bits (1659), Expect = 0.0
Identities = 167/513 (32%), Positives = 259/513 (50%), Gaps = 64/513 (12%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+DL VIG GSGG+ AAR +A AKV + E +GGTCV GCVPKKI+
Sbjct: 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEK----------SRLGGTCVNVGCVPKKIM 51
Query: 83 VYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG 142
AS LE++R YG++ K F+ L++++ I RLN IY++ LS V LYEG
Sbjct: 52 FNAASVHDILENSRHYGFDT--KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEG 109
Query: 143 EGKIVGPNEVEVT---------QLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDE 193
+ N + + + ++ILIA G++ P+ G E I+SDE
Sbjct: 110 TASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGIENTISSDE 169
Query: 194 ALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLE 253
+++E K+ ++G GYIAVE ++ + +G + R LR FD+ + V+ +++
Sbjct: 170 FFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMK 228
Query: 254 GRGINLHPRTTIKELIKSEEGVKVIT--DHGEEIVADVVLFATGRAPNTKRLNLKAVGVE 311
IN+ + E+ K + I D D V++ GR+P+T+ L L+ + VE
Sbjct: 229 KNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVE 288
Query: 312 VDQTGAVKVDENSRTNVPSIWAVGD----------------------------------V 337
+ + VDEN RT+V +I+AVGD +
Sbjct: 289 TNN-NYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDI 347
Query: 338 TNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GK 396
+ LTPVA+ G A +F + K +Y+ +P +F PP+ +GLSEE AI+ GK
Sbjct: 348 FYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGK 407
Query: 397 GDILVFTSSFNPMRNTISG----RQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAV 452
++ ++ S F + ++ +EKT +KLV + E + G + G A EI+QG AV
Sbjct: 408 ENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAV 467
Query: 453 ALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTR 485
ALK ATK FD T+ IHP++AEEF+T++ +
Sbjct: 468 ALKMNATKKDFDETIPIHPTAAEEFLTLQPWMK 500
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 445 bits (1148), Expect = e-153
Identities = 104/504 (20%), Positives = 190/504 (37%), Gaps = 45/504 (8%)
Query: 13 QPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72
N +E ++D IG G+ G + + G + I + +GG+C
Sbjct: 33 IYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRW---------PFLGGSCP 83
Query: 73 IRGCVPKKILVYGASFGGELEDARSYGW-EVHEKIDFDWKKLLQKKTDEILRLNGI--YK 129
CVP + A+ W + K+++ +GI ++
Sbjct: 84 HNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQ 143
Query: 130 RLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAI 189
+ K++ + VE G + AK++++A G+ +PG
Sbjct: 144 SKEQLNLEYILNCPAKVIDNHTVEAA---GKV--FKAKNLILAVGAGPGTLDVPGVNAKG 198
Query: 190 TSDE---ALSLEELP-KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMR 245
D L+ P VV+GG AVE+ + G +L R E D+E R
Sbjct: 199 VFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETR 258
Query: 246 AVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT-----DHGEEIVADVVLFATGRAPNT 300
A V ++ +G+ + + + + + G + I D V G P +
Sbjct: 259 AYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS 318
Query: 301 KRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360
L K +G+++ G V V+E +T+VP+++AVGD+ A G A+ V
Sbjct: 319 AEL-AKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVM- 376
Query: 361 GQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQG-------------KGDILVFTSSFN 407
G+ ++ P + +S +G+ EE+A G G + +S
Sbjct: 377 GEKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDR 436
Query: 408 PMRNTISGRQEKT--VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDS 465
M K+V+DA+T KVLGA G A + Q + V +K G T +
Sbjct: 437 TMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGD 496
Query: 466 T--VGIHPSSAEEFVTMRSVTRRV 487
+ ++P+ + +R+ ++ +
Sbjct: 497 MDELFLNPTHFIQLSRLRAGSKNL 520
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 356 bits (917), Expect = e-119
Identities = 132/461 (28%), Positives = 212/461 (45%), Gaps = 26/461 (5%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+ VIG+G + AA + GA+V + E G +GGTCV GCVP KI+
Sbjct: 4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIER----------GTIGGTCVNVGCVPSKIM 53
Query: 83 VYGA-SFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL-NGIYKRLL-SNAGVKL 139
+ A E G D KLL ++ + L + Y+ +L N + +
Sbjct: 54 IRAAHIAHLRRESPFDGGIAATV-PTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITV 112
Query: 140 YEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA--ITSDEALSL 197
GE + + V +G + L+ATG+ PIPG + + TS EAL+
Sbjct: 113 VHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALAS 172
Query: 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257
+ +P+R V+G +A+E A + +GS V +L R L D + V GI
Sbjct: 173 DTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTL-FFREDPAIGEAVTAAFRAEGI 231
Query: 258 NLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGA 317
+ T ++ + + T HGE + AD +L ATGR PNT+ L L A GV V+ GA
Sbjct: 232 EVLEHTQASQVAHMDGEFVLTTTHGE-LRADKLLVATGRTPNTRSLALDAAGVTVNAQGA 290
Query: 318 VKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFC 377
+ +D+ RT+ P+I+A GD T++ VA GT A + GG D +P VF
Sbjct: 291 IVIDQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG-DAALDLTAMPAVVFT 349
Query: 378 IPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNT---ISGRQEKTVMKLVVDAETEKVL 434
P ++ VG SE +A G I + + + N ++ + +KLV++ + +++
Sbjct: 350 DPQVATVGYSEAEAHHDG---IETDSRTL-TLDNVPRALANFDTRGFIKLVIEEGSHRLI 405
Query: 435 GASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
G PEA E++Q A+A++ T + + + + E
Sbjct: 406 GVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVE 446
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-110
Identities = 106/472 (22%), Positives = 186/472 (39%), Gaps = 39/472 (8%)
Query: 24 FDLFVIGAGSGG----VRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPK 79
+ ++G G G + AA +V + + G+GG V+ CVP
Sbjct: 3 TRIVILGGGPAGYEAALVAATSHPE-TTQVTVIDC----------DGIGGAAVLDDCVPS 51
Query: 80 KILVYGASFGGELEDARSYGWEVH-EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVK 138
K + EL A G+ + + ++ + + L + GV+
Sbjct: 52 KTFIASTGLRTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQ 111
Query: 139 LYEGEGKIVGP------NEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELA 188
+ G G+++ + ++ T DG+ + A +L+ATG+ +P E
Sbjct: 112 VIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP--RILPSAQPDGERI 169
Query: 189 ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAV 247
+T + L+ LP +V+G G EF + +G V ++ + + L D + V
Sbjct: 170 LTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV-LPYEDADAALV 228
Query: 248 VARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKA 307
+ + RG+ L + ++ GV V G + L G PNT L L+
Sbjct: 229 LEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLER 288
Query: 308 VGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPD 367
VG+++ + + VD SRT I+A GD T + L VA M+G G
Sbjct: 289 VGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIR 348
Query: 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKTVMK 423
R V VF P ++ VG+ + + T P+ R +S + V K
Sbjct: 349 LRTVAATVFTRPEIAAVGVPQSVIDAGS---VAARTIML-PLRTNARAKMSEMRHGFV-K 403
Query: 424 LVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
+ T V+G + P A E++ IAVA++ T + T+ ++PS +
Sbjct: 404 IFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSG 455
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 310 bits (796), Expect = e-101
Identities = 128/470 (27%), Positives = 207/470 (44%), Gaps = 41/470 (8%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+D+ V+GAG GG AA +A G I E GG C+ GC+P K L
Sbjct: 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEP----------KYWGGVCLNVGCIPSKAL 52
Query: 83 VYGA-SFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ A +DA+++G ++ FD+ + L+ +
Sbjct: 53 LRNAELVHIFTKDAKAFGISG--EVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIH 110
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQEL---AITSDEALSLE 198
G G N + V DG S + + +IATGS +PG L +T +E +
Sbjct: 111 GYGTFADANTLLVDLNDGGTESVTFDNAIIATGSST--RLVPGTSLSANVVTYEEQILSR 168
Query: 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE-----LPLRGFDDEMRAVVARNLE 253
ELPK ++ G G I +EF + + G V ++ E LP D ++ + + +
Sbjct: 169 ELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIV---EFLPRALP--NEDADVSKEIEKQFK 223
Query: 254 GRGINLHPRTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRAPNTKRLNLKAVGV 310
G+ + T ++ + V V +E+ A+ VL A G APN + L GV
Sbjct: 224 KLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGV 283
Query: 311 EVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQP-CKPDYR 369
+ A+ VD+ RTNV I+A+GDV + L VA +G A+T+ G + D+R
Sbjct: 284 ALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHR 343
Query: 370 DVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKTVMKLV 425
+P A FC P ++ GL+E+QA +G V + F P + G V KLV
Sbjct: 344 MLPRATFCQPNVASFGLTEQQARNEG---YDVVVAKF-PFTANAKAHGVGDPSGFV-KLV 398
Query: 426 VDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
DA+ ++LG + G + E++ + +A + T ++ V HP+ +E
Sbjct: 399 ADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSE 448
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 304 bits (782), Expect = 6e-99
Identities = 138/463 (29%), Positives = 218/463 (47%), Gaps = 36/463 (7%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+DL VIGAG GG AA +A G KVG+ E +GGTC+ GC+P K L+
Sbjct: 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKE---------KALGGTCLRVGCIPSKALL 52
Query: 84 YGASFGGELEDARS--YGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ +A+ G +V + ++ D L+ K + + L G+ ++
Sbjct: 53 ETTE---RIYEAKKGLLGAKV-KGVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQ 108
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSL 197
G + + +V V + T A++ILIATGS P E +TS EALS
Sbjct: 109 GTARFLSERKVLV---EETGEELEARYILIATGSAP--LIPPWAQVDYERVVTSTEALSF 163
Query: 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRG 256
E+PKR +V+GGG I +E +W +G+ V +L + + L D E+ R + +G
Sbjct: 164 PEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI-LPTMDLEVSRAAERVFKKQG 222
Query: 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTG 316
+ + + ++ +G +V + GE + AD VL A GR P T+ L+L+ G+ D+ G
Sbjct: 223 LTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERG 282
Query: 317 AVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVF 376
+ VDE+ RT VP I+A+GDV L A EG + + DY+ +P V+
Sbjct: 283 RIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHM-VRGFGHVDYQAIPSVVY 341
Query: 377 CIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKTVMKLVVDAETEK 432
P ++ VG +EE+ QG I F P R G E + K++ A+T++
Sbjct: 342 THPEIAAVGYTEEELKAQG---IPYKVGKF-PYSASGRARAMGETEGFI-KVLAHAKTDR 396
Query: 433 VLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
+LG G +++ A+AL A+ HPS +E
Sbjct: 397 ILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSE 439
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 298 bits (765), Expect = 3e-96
Identities = 145/468 (30%), Positives = 228/468 (48%), Gaps = 34/468 (7%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+ D+ +IG G GG AA +A G K E G +GGTC+ GC+P K L
Sbjct: 6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKR---------GALGGTCLNVGCIPSKAL 56
Query: 83 VYGA-SFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
++ + + ++G +V ++ D ++ +K + L + L V +
Sbjct: 57 LHSSHMYHEAKHSFANHGVKV-SNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVK 115
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSL 197
G GK V P+E+ V ++G KHI+IATGS +PG ++ ++S AL+L
Sbjct: 116 GYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV--KSLPGVTIDEKKIVSSTGALAL 173
Query: 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRG 256
E+PK+ VV+G GYI +E S+W +GS V ++ F E+ + D E+R R+LE +G
Sbjct: 174 SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI-VPTMDAEIRKQFQRSLEKQG 232
Query: 257 INLHPRTTIKELIKSEEGVKVITDHG-----EEIVADVVLFATGRAPNTKRLNLKAVGVE 311
+ +T + + S +GVK+ + I ADVVL + GR P T LNL +GVE
Sbjct: 233 MKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVE 292
Query: 312 VDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDV 371
D+ G + V+E TNV ++A+GDV L A +G + + G+ DY V
Sbjct: 293 TDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYL-AGKVGHVDYDKV 351
Query: 372 PCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKTVMKLVVD 427
P V+ P ++ VG +EEQ E G + F P R E V K++ +
Sbjct: 352 PGVVYTNPEVASVGKTEEQVKETG---VEYRVGKF-PFMANSRAKAIDNAEGLV-KIIAE 406
Query: 428 AETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
ET+K+LG + P A E++ A+AL+ A+ HP+ +E
Sbjct: 407 KETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSE 454
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 297 bits (762), Expect = 1e-95
Identities = 142/472 (30%), Positives = 227/472 (48%), Gaps = 36/472 (7%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+DL VIG+G GG A +A G KV + E GGTC+ GC+P K L
Sbjct: 25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKR---------STYGGTCLNVGCIPSKAL 75
Query: 83 VYGA-SFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
++ + F + G EV + +K++ K + L + ++
Sbjct: 76 LHASEMFHQAQHGLEALGVEV-ANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQ 134
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA------ITSDEAL 195
G GK++G +V VT G + AK+++IATGS A IPG E+A ++S AL
Sbjct: 135 GTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDV--AGIPGVEVAFDEKTIVSSTGAL 192
Query: 196 SLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEG 254
+LE++P +V+GGG I +E S+W +G+ V ++ F + L G D E+ + R L
Sbjct: 193 ALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTI-LGGMDGEVAKQLQRMLTK 251
Query: 255 RGINLHPRTTIKELIKSEEGVKVITDHG-----EEIVADVVLFATGRAPNTKRLNLKAVG 309
+GI+ + +KS +G KV + + A+VVL ATGR P+T L L G
Sbjct: 252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAG 311
Query: 310 VEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYR 369
V +D G V++D + +T++ ++A+GDV L A EG A+ + GQ +Y
Sbjct: 312 VVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAE-IIAGQAGHVNYD 370
Query: 370 DVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKTVMKLV 425
+P V+ P ++ VG +EE+ G + F P R + + V K++
Sbjct: 371 VIPGVVYTQPEVASVGKTEEELKAAG---VAYKIGKF-PFTANGRARAMLQTDGFV-KIL 425
Query: 426 VDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477
D ET++VLG + G A E++ IAV ++ G + T HP+ +E
Sbjct: 426 ADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAV 477
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 | Back alignment and structure |
|---|
Score = 295 bits (759), Expect = 2e-95
Identities = 127/469 (27%), Positives = 218/469 (46%), Gaps = 32/469 (6%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
FD+ VIGAG GG AA SA G K + E +GG TC+ GC+P K L
Sbjct: 3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGG---TCLNVGCIPSKAL 59
Query: 83 VYGASFGGELEDAR----SYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVK 138
+ + + +A +G ++ D ++ +K + L G L+ GV
Sbjct: 60 LDSSY---KFHEAHESFKLHGIST-GEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVT 115
Query: 139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEA 194
L+EG GK++ +VEVT DG+ +++++A+GS+ IP Q++ + S A
Sbjct: 116 LFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKP--VEIPPAPVDQDVIVDSTGA 173
Query: 195 LSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLE 253
L + +P + V+G G I +E S+W +G+ V +L + L D+++ + L
Sbjct: 174 LDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF-LPAVDEQVAKEAQKILT 232
Query: 254 GRGINLHPRTTIKELIKSEEGVKVIT---DHGEEIVADVVLFATGRAPNTKRLNLKAVGV 310
+G+ + + + V V + + D ++ A GR P T L GV
Sbjct: 233 KQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGV 292
Query: 311 EVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRD 370
+D+ G + VD+ T+VP ++A+GDV L A EG A+ G + +Y
Sbjct: 293 TLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAE-RIAGHKAQMNYDL 351
Query: 371 VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKTVMKLVV 426
+P ++ P ++ VG +E+ +G + + F P R + V K++
Sbjct: 352 IPAVIYTHPEIAGVGKTEQALKAEG---VAINVGVF-PFAASGRAMAANDTAGFV-KVIA 406
Query: 427 DAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
DA+T++VLG + GP A E++Q A+A++ G + V HP+ +E
Sbjct: 407 DAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSE 455
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455 | Back alignment and structure |
|---|
Score = 292 bits (751), Expect = 2e-94
Identities = 144/466 (30%), Positives = 231/466 (49%), Gaps = 32/466 (6%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+ + V+GAG GG AA +A G KV I E +GG C+ GC+P K L
Sbjct: 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN----------LGGVCLNVGCIPSKAL 52
Query: 83 VYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG 142
+ + + + + G + E + D+ K+ + K + +L G + LL V++ +G
Sbjct: 53 ISASHRYEQAKHSEEMGIKA-ENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKG 111
Query: 143 EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQEL---AITSDEALSLEE 199
E V N V V D + +Y+ K+ +IATGSR +P + + S AL+L E
Sbjct: 112 EAYFVDANTVRVVNGDSAQ-TYTFKNAIIATGSRP--IELPNFKFSNRILDSTGALNLGE 168
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGIN 258
+PK VV+GGGYI +E + + G+ V +L E+ L GF+ +M A++ + L+ +G+
Sbjct: 169 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI-LSGFEKQMAAIIKKRLKKKGVE 227
Query: 259 LHPRTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQT 315
+ K + E+GV V + + I AD VL GR PNT L L+ +G+++
Sbjct: 228 VVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNR 287
Query: 316 GAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAV 375
G ++VD+ RT+VP+I+A+GD+ L A EG A+ G P DY +P V
Sbjct: 288 GLIEVDQQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAE-AIAGHPSAVDYVAIPAVV 346
Query: 376 FCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKTVMKLVVDAETE 431
F P + VG E+QA ++G I V + F P R + + KLVV E
Sbjct: 347 FSDPECASVGYFEQQAKDEG---IDVIAAKF-PFAANGRALALNDTDGFL-KLVVRKEDG 401
Query: 432 KVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477
++GA + GP A +++ + +A++ G T T+ HP+ E
Sbjct: 402 VIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIA 447
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 293 bits (753), Expect = 3e-94
Identities = 111/471 (23%), Positives = 176/471 (37%), Gaps = 39/471 (8%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+ D+ +IG G+ G+ A R + KV + E G G TC GC+P K+L
Sbjct: 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEG----------GAYGTTCARVGCMPSKLL 57
Query: 83 VYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL-NGIYKRLLSNAGVKLYE 141
+ A +G +V ++I + K ++++ E R + + + S
Sbjct: 58 IAAADASYHASQTDLFGIQV-DRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIR 116
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA----ITSDEALSL 197
G K + + ++V AK I+IATGSR A +T+D L
Sbjct: 117 GFAKFLDEHTLQV----DDHSQVIAKRIVIATGSRP--NYPEFLAAAGSRLLTNDNLFEL 170
Query: 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257
+LPK V G G I +E +G V + R D+EM+ +
Sbjct: 171 NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFN-EEF 229
Query: 258 NLHPRTTIKELIKSEEGVKVITDHG----EEIVADVVLFATGRAPNTKRLNLKAVGVEVD 313
+ + I+ E+ V+VI VL ATGR N +L L+ +E+D
Sbjct: 230 YFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELD 289
Query: 314 QTGAVKVDENS-RTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKP-DYRDV 371
+ + DE + +T+V I+ GD N + L A +G R
Sbjct: 290 KKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGAYPVIAQGQRRAP 349
Query: 372 PCAVFCIPPLSVVGLSEEQAIEQGKGD--ILVFTSSFNPMRNTISGR-----QEKTVMKL 424
VF P ++ VGLS Q + GR + K ++ +
Sbjct: 350 LSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQV-SFEG--QGRSRVMGKNKGLLNV 406
Query: 425 VVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
D + + LGA M GP A I +A A + T + HP E
Sbjct: 407 YADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEE 457
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 | Back alignment and structure |
|---|
Score = 290 bits (746), Expect = 2e-93
Identities = 123/471 (26%), Positives = 217/471 (46%), Gaps = 36/471 (7%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+D+ VIG G GG A+ +A G K E G +GGTC+ GC+P K L+
Sbjct: 3 YDVVVIGGGPGGYVASIKAAQLGMKTACVEKR---------GALGGTCLNVGCIPSKALL 53
Query: 84 YGA-SFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG 142
+ + + YG E + D K+ Q+K + L G + L V Y+G
Sbjct: 54 HATHLYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKG 113
Query: 143 EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLE 198
EG + + V LDG + K +IATGS +P +++ ++S AL+L
Sbjct: 114 EGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEP--TELPFLPFDEKVVLSSTGALALP 171
Query: 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLE-GRG 256
+PK VV+GGG I +E S+W +G+ V ++ F D+++ + L
Sbjct: 172 RVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRC-APTLDEDVTNALVGALAKNEK 230
Query: 257 INLHPRTTIKELIKSEEGVKVITDHG----EEIVADVVLFATGRAPNTKRLNLKAVGVEV 312
+ T + + + V + + E + + +L + GR P T L L + V
Sbjct: 231 MKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAK 290
Query: 313 DQTGAVKVDENSRTNVPSIWAVGDVTNR--MNLTPVALMEGTCFAKTVFGGQPCKPDYRD 370
++ G VK+ ++ T++P ++A+GDV ++ M L A EG A+ + G+P +Y
Sbjct: 291 NERGFVKIGDHFETSIPDVYAIGDVVDKGPM-LAHKAEDEGVACAE-ILAGKPGHVNYGV 348
Query: 371 VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKTVMKLVV 426
+P ++ +P ++ VG SE++ ++G + F P R ++ V K++V
Sbjct: 349 IPAVIYTMPEVASVGKSEDELKKEG---VAYKVGKF-PFNANSRAKAVSTEDGFV-KVLV 403
Query: 427 DAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477
D T+++LG + A E++ +A++ GA+ T HP+ +E
Sbjct: 404 DKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEAL 454
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474 | Back alignment and structure |
|---|
Score = 287 bits (738), Expect = 3e-92
Identities = 144/474 (30%), Positives = 220/474 (46%), Gaps = 39/474 (8%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
D D+ VIG+G GG AA +A G K E +GGTC+ GC+P K L
Sbjct: 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKN---------ETLGGTCLNVGCIPSKAL 56
Query: 83 VYGASFGGELEDARSYGWEVH----EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVK 138
+ + A + ++ + K++++K+ + L G L V
Sbjct: 57 LNNSH---YYHMAHGTDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVV 113
Query: 139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEA 194
G GKI G N+V T+ DG K+ILIATGS P PG ++ ++S A
Sbjct: 114 HVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEV--TPFPGITIDEDTIVSSTGA 171
Query: 195 LSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLE 253
LSL+++P++ VV+G G I VE S+W+ +G+ V + F + G D E+ R L+
Sbjct: 172 LSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQ 231
Query: 254 GRGINLHPRTTIKELIKSEEGVKVIT------DHGEEIVADVVLFATGRAPNTKRLNLKA 307
+G T + K +G ++ E I DV+L GR P TK L L+
Sbjct: 232 KQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEE 291
Query: 308 VGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPD 367
+G+E+D G + V+ +T +P+I+A+GDV L A EG + G D
Sbjct: 292 LGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVE-GMAGGAVHID 350
Query: 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKTVMK 423
Y VP ++ P ++ VG SEEQ E+G I F P R + + V K
Sbjct: 351 YNCVPSVIYTHPEVAWVGKSEEQLKEEG---IEYKVGKF-PFAANSRAKTNADTDGMV-K 405
Query: 424 LVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477
++ T++VLGA + GP A E++ A+AL+ GA+ HP+ +E F
Sbjct: 406 ILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAF 459
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 | Back alignment and structure |
|---|
Score = 287 bits (736), Expect = 7e-92
Identities = 134/476 (28%), Positives = 225/476 (47%), Gaps = 41/476 (8%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
D+ +IG G G AA +A G E G +GGTC+ GC+P K L
Sbjct: 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKR---------GKLGGTCLNVGCIPSKAL 55
Query: 83 VYGA-SFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ + F +A+ G +V+ I + + K D + +L G + L V Y+
Sbjct: 56 LNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYK 115
Query: 142 GEGKIVGPNEVEVTQLDGTKLS------YSAKHILIATGSRAQRAPIPG----QELAITS 191
G G ++ VT +DG + + K+I++ATGS P PG +E ++S
Sbjct: 116 GNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV--TPFPGIEIDEEKIVSS 173
Query: 192 DEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVAR 250
ALSL+E+PKR ++GGG I +E S++ +GS V ++ F+ ++ D E+ +
Sbjct: 174 TGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI-GASMDGEVAKATQK 232
Query: 251 NLEGRGINLHPRTTIKELIKSEEGVKVI-------TDHGEEIVADVVLFATGRAPNTKRL 303
L+ +G++ T + ++++ V T+ E + A+V+L A GR P L
Sbjct: 233 FLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGL 292
Query: 304 NLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQP 363
+ +G+EVD+ G + +D+ + P I VGDVT L A EG + +
Sbjct: 293 GAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVE-MLKTGH 351
Query: 364 CKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEK 419
+Y ++P ++ P ++ VG +EEQ E G I F P R + E
Sbjct: 352 GHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAG---IDYKIGKF-PFAANSRAKTNQDTEG 407
Query: 420 TVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
V K+++D++TE++LGA + GP A E++ +AL+ GA+ HP+ +E
Sbjct: 408 FV-KILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSE 462
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464 | Back alignment and structure |
|---|
Score = 280 bits (718), Expect = 2e-89
Identities = 161/467 (34%), Positives = 232/467 (49%), Gaps = 41/467 (8%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+DL VIG G GG AA +A G KV E VGG C+ GC+P K L
Sbjct: 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE----------VGGVCLNVGCIPTKAL 55
Query: 83 VYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG 142
++ A L+ A +G + K + D KKL + + +L G LL GV+L G
Sbjct: 56 LHAAETLHHLKVAEGFG--LKAKPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRG 113
Query: 143 EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQEL---AITSDEALSLEE 199
++VGP EVEV Y AK +++ATGS + G S AL +EE
Sbjct: 114 FARLVGPKEVEVG-----GERYGAKSLILATGSEP--LELKGFPFGEDVWDSTRALKVEE 166
Query: 200 -LPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGI 257
LPKR +V+GGG + +E ++R +G+ V L+ + E+ L D E A++ R LE GI
Sbjct: 167 GLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI-LPQGDPETAALLRRALEKEGI 225
Query: 258 NLHPRTTIKELIKSEEGVKVITDHG-----EEIVADVVLFATGRAPNTKRLNLKAVGVEV 312
+ +T K ++G+ V + EE+V D VL A GR P T+ L L+ GV+V
Sbjct: 226 RVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKV 285
Query: 313 DQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVP 372
D+ G ++V+ T+VP ++A+GD L A+ EG A+ G+ DY VP
Sbjct: 286 DERGFIRVNARMETSVPGVYAIGDAARPPLLAHKAMREGLIAAE-NAAGKDSAFDY-QVP 343
Query: 373 CAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKTVMKLVVDA 428
V+ P + VGL+EE+A G V F P+ R G E V K+V D
Sbjct: 344 SVVYTSPEWAGVGLTEEEAKRAG---YKVKVGKF-PLAASGRALTLGGAEGMV-KVVGDE 398
Query: 429 ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
ET+ +LG + GP+A E++ A+AL+ GAT TV HP+ +E
Sbjct: 399 ETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSE 445
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482 | Back alignment and structure |
|---|
Score = 279 bits (717), Expect = 6e-89
Identities = 132/477 (27%), Positives = 224/477 (46%), Gaps = 41/477 (8%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
++D+ V+G G GG AA +A+ G KV I E +GG C+ GC+P K L
Sbjct: 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERY---------KTLGGVCLNVGCIPSKAL 56
Query: 83 VYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG 142
++ A+ E+ + G + + + D L K + RL G + + V + +G
Sbjct: 57 LHNAAVIDEVRHLAANGIKY-PEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQG 115
Query: 143 EGKIVGPNEVEVTQLDGTKL----------SYSAKHILIATGSRAQRAPIPGQEL---AI 189
+G+ + P+ +EV+ G + K+ +IA GSR +P I
Sbjct: 116 DGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRV--TKLPFIPEDPRII 173
Query: 190 TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVV 248
S AL+L+E+P + +++GGG I +E +++ +GS +D++ L ++G D ++ V
Sbjct: 174 DSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL-MQGADRDLVKVW 232
Query: 249 ARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG----EEIVADVVLFATGRAPNTKRLN 304
+ E R N+ T + E+GV V + E D VL A GRAPN K ++
Sbjct: 233 QKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLIS 292
Query: 305 LKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPC 364
+ GV V G ++VD+ RTNVP I+A+GD+ + L A+ EG A+ G
Sbjct: 293 AEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAE-NCAGHKA 351
Query: 365 KPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKT 420
D R +P + P ++ VG +E A + ++F P R +G +
Sbjct: 352 YFDARVIPGVAYTSPEVAWVGETELSAKASA---RKITKANF-PWAASGRAIANGCDKPF 407
Query: 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477
KL+ DAET +++G + GP +++ + +A++ G A T+ HP+ E
Sbjct: 408 T-KLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESI 463
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 | Back alignment and structure |
|---|
Score = 279 bits (715), Expect = 7e-89
Identities = 115/475 (24%), Positives = 205/475 (43%), Gaps = 52/475 (10%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+D+ VIGAG G A A V + + G +GG C+ GCVP K +
Sbjct: 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPK---------GELGGNCLYSGCVPSKTV 54
Query: 83 VYGASFGGELEDARSYGWEVH----EKIDFDWKKLLQKKTDEI-LRLNGIYKRLLSNAGV 137
E ++ W + KI D+ + +K LR + + +
Sbjct: 55 ---------REVIQTA-WRLTNIANVKIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETL 104
Query: 138 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEAL-- 195
Y+G KI P V V +G ++ ++++IA+G+ + +PG E +TSD+
Sbjct: 105 TFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGY 164
Query: 196 --SLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNL 252
S +LP+ V++G GYI +E ASI+R MG ++ + D ++ + L
Sbjct: 165 KTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSIL 224
Query: 253 EGRGINLHPRTTIKELIKSEEGVKVITDHG-----EEIVADVVLFATGRAPNTKRLNLKA 307
+N+ + + E+ K ++ + + I + V+ A GR P +
Sbjct: 225 ---KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP-EGARE 280
Query: 308 VGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPD 367
+G+ + +TG + VDE +TN+P+++A GD A+ A D
Sbjct: 281 IGLSISKTG-IVVDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAAN-NIMANGMPVD 338
Query: 368 YRD---VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKT 420
Y D +P ++ IP LS VG+ +A + G I + + + M I G++E
Sbjct: 339 YVDVKSIPVTIYTIPSLSYVGILPSKARKMG---IEIVEAEY-NMEEDVSAQIYGQKEGV 394
Query: 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
+ KL+ + + +++GA M G + ++ + +A+ G Q S HPS+ E
Sbjct: 395 L-KLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNE 448
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 2e-87
Identities = 129/467 (27%), Positives = 209/467 (44%), Gaps = 43/467 (9%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
L +IG G GG AA + G + E +GGTC+ GC+P K L
Sbjct: 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA----------LGGTCLNIGCIPSKAL 54
Query: 83 VYGASF---GGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKL 139
++ A + G V D + + K + RL LL GVK+
Sbjct: 55 IHVAEQFHQASRFTEPSPLGISV-ASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKV 113
Query: 140 YEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQEL---AITSDEALS 196
G K++ +VEV +H+L+ATGS + +P L I+S EAL+
Sbjct: 114 VHGWAKVLDGKQVEVD-----GQRIQCEHLLLATGSSS--VELPMLPLGGPVISSTEALA 166
Query: 197 LEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGR 255
+ LP+ VV+GGGYI +E +R +G+ V ++ R+ + L +D E+ A VA +L+
Sbjct: 167 PKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI-LPTYDSELTAPVAESLKKL 225
Query: 256 GINLHPRTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRAPNTKRLNLKAVGVEV 312
GI LH +++ E G + D + AD VL A GR P TK NL+ + +++
Sbjct: 226 GIALHLGHSVE---GYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKM 282
Query: 313 DQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVP 372
+ + +DE +T++ ++WA+GDV L A+ +G A+ + G+ + + +
Sbjct: 283 NGAA-IAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAE-IIAGKARRFEPAAIA 340
Query: 373 CAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM----RNTISGRQEKTVMKLVVDA 428
F P + VVG + EQA +QG + + F P R + V ++V
Sbjct: 341 AVCFTDPEVVVVGKTPEQASQQG---LDCIVAQF-PFAANGRAMSLESKSGFV-RVVARR 395
Query: 429 ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
+ +LG G E+ A +L+ GA T+ HP+ E
Sbjct: 396 DNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGE 442
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 4e-45
Identities = 66/344 (19%), Positives = 128/344 (37%), Gaps = 53/344 (15%)
Query: 151 EVEVTQL-DGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEALSLEEL---- 200
V +S +LIATG R G++L T +A + +
Sbjct: 125 IVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETN 184
Query: 201 -PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259
+ ++GGG I +E A + +G V ++ R + +D +M + + + I +
Sbjct: 185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEI 244
Query: 260 HPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319
+K +E V TD AD+VL + G PNT L+ + + GA++
Sbjct: 245 LTNENVKAFKGNERVEAVETD-KGTYKADLVLVSVGVKPNTD-F-LEGTNIRTNHKGAIE 301
Query: 320 VDENSRTNVPSIWAVGD-------VTNRMNLTP---VALMEGTCFAKTVFGGQPCKPDYR 369
V+ +TNV ++A GD + + P A +G + + ++
Sbjct: 302 VNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDK---RRAFK 358
Query: 370 DVPC-AVFCIPPLSV--VGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ--------E 418
+ L++ GL+E++A + +
Sbjct: 359 GTLGTGIIKFMNLTLARTGLNEKEAKGLH----------IPYKTVKVDSTNMAGYYPNAK 408
Query: 419 KTVMKLVVDAETEKVLGASMCGPEAPEIMQGI---AVALKCGAT 459
+KL+ ++T+++LG + G E + + I A+AL +
Sbjct: 409 PLYLKLLYRSDTKQLLGGQVIGEE--GVDKRIDVIAMALFNKMS 450
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 2e-44
Identities = 68/336 (20%), Positives = 130/336 (38%), Gaps = 43/336 (12%)
Query: 151 EVEVTQLDGTK-LSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEALSLEEL---P 201
+ T+ + + SY +++ATG+ I G + AL+ L
Sbjct: 90 LIAWTRKEEQQWYSYD--KLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLENS 147
Query: 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLH 260
+ V+G G I +E M TV + E L + FD EM A V ++LE + + H
Sbjct: 148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFH 207
Query: 261 PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320
T+ + ++ G+ + T +EI D +FA P ++ + + V
Sbjct: 208 FEETVLGIEETANGIVLETS-EQEISCDSGIFALNLHPQLA---YLDKKIQRNLDQTIAV 263
Query: 321 DENSRTNVPSIWAVGD-------VTNRMNLTP---VALMEGTCFAKTVFGGQPCKPDYRD 370
D +T+VP+++A+GD P A+ G A + +
Sbjct: 264 DAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEK---THRFIG 320
Query: 371 VPC-AVFCIPPLSV--VGLSEEQAIEQGKGDILVFTSS-FNPMRNTISGRQEKTVMKLVV 426
+ + GL+E + + + + P+++ + + KL+
Sbjct: 321 SLRTMGTKVGDYYLASTGLTETEGLFFPQTLASIIVRQPAPPLQHG-----TEILGKLIY 375
Query: 427 DAETEKVLGASMCGPEAPEIMQGI---AVALKCGAT 459
D T++VLGA +C ++ I A++++ G T
Sbjct: 376 DKVTQRVLGAQLCSKN--NCLEKINTLALSIQTGQT 409
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 7e-44
Identities = 80/346 (23%), Positives = 137/346 (39%), Gaps = 52/346 (15%)
Query: 151 EVEVTQL-DGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEALSLEEL---- 200
VE+ L G + + +++A GS+A R P+ G +LA DEA ++
Sbjct: 98 TVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAG 157
Query: 201 -PKRAVVLGGGYIAVEFA-SIWRGMGSTVDLLFRKELPLRGFDD-EMRAVVARNLEGRGI 257
+AV++GGG+I +E A S+ G ++ + + GF + ++ +LE +
Sbjct: 158 EVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDV 217
Query: 258 NLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGA 317
+H + L V + + AD+V+ A G +PNT+ L + G+E+D GA
Sbjct: 218 VVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQ-L-ARDAGLELDPRGA 275
Query: 318 VKVDENSRTNVPSIWAVGD-------VTNRMNLTP---VALMEGTCFAKTVFGGQPCKPD 367
+ VD RT+ P I+A GD VT + P +A +G + G
Sbjct: 276 IIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADG---DAT 332
Query: 368 YRDVPC-AVFCIPPLSV--VGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ------- 417
+ + S GL+ E A+ +G ++ + +
Sbjct: 333 FPGAVGSWAVKLFEGSASGAGLTVEGALREG----------YDAVNVHVEQFDRAHFYPE 382
Query: 418 -EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGI---AVALKCGAT 459
++LVVD T +VLG + I A L T
Sbjct: 383 KTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPT 428
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 3e-43
Identities = 87/343 (25%), Positives = 148/343 (43%), Gaps = 50/343 (14%)
Query: 149 PNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEALSLEEL--- 200
V V + +G + SY +++ A G+ Q I G L +AL++ E
Sbjct: 87 TGYVRVRE-NGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEK 145
Query: 201 --PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVARNLEGRGI 257
+ V++GGGYI +E A + G V ++ R E LR FD E+ ++ L+ + +
Sbjct: 146 YKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLK-KHV 204
Query: 258 NLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGA 317
NL + ++ E KV+TD E A++V+ ATG PN + L K +GV + +TGA
Sbjct: 205 NLRLQEITMKIEGEERVEKVVTD-AGEYKAELVILATGIKPNIE-L-AKQLGVRIGETGA 261
Query: 318 VKVDENSRTNVPSIWAVGD-------VTNRMNLTP---VALMEGTCFAKTVFGGQPCKPD 367
+ +E +T+V +++A GD +T R P G + G +
Sbjct: 262 IWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGK---ELH 318
Query: 368 YRDVPC-AVFCIPPLSV--VGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ------- 417
+ V AV + + GL+E +A+++G ++ I
Sbjct: 319 FPGVLGTAVTKFMDVEIGKTGLTEMEALKEG----------YDVRTAFIKASTRPHYYPG 368
Query: 418 -EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGAT 459
+ +K VVD ET ++LG + G + + A L G T
Sbjct: 369 GREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFT 411
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 8e-43
Identities = 71/343 (20%), Positives = 130/343 (37%), Gaps = 50/343 (14%)
Query: 151 EVEVTQLD-GTKLSYSAKHILIATGSRAQRAPIPGQELAI------TSDEALSLEEL--- 200
+ + + + + ++++ G++ IPG E A + ++
Sbjct: 125 TITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDE 184
Query: 201 --PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258
P+ A V+GGG+I VE R G V L+ + D EM A V +++ +
Sbjct: 185 KKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVE 244
Query: 259 LHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318
L + ++ V + G I D+++ A G P + L K G+ + G +
Sbjct: 245 LVFEDGVDA-LEENGAVVRLKS-GSVIQTDMLILAIGVQPESS-L-AKGAGLALGVRGTI 300
Query: 319 KVDENSRTNVPSIWAVGD-------VTNRMNLTP---VALMEGTCFAKTVFGGQPCKPDY 368
KV+E +T+ P I+A+GD VT + P A +G A + G Y
Sbjct: 301 KVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSL--Y 358
Query: 369 RDVPC-AVFCIPPLSV--VGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ-------- 417
+ +V + L+V GL+E+ +
Sbjct: 359 KGTLGTSVAKVFDLTVATTGLNEKILKRLN----------IPYEVVHVQANSHAGYYPNA 408
Query: 418 EKTVMKLVVDAETEKVLGASMCGPE-APEIMQGIAVALKCGAT 459
++KL+ + ++ K+ GA G + + M IA A+K T
Sbjct: 409 TPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLT 451
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 1e-42
Identities = 56/339 (16%), Positives = 126/339 (37%), Gaps = 50/339 (14%)
Query: 151 EVEVTQL-DGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEALSLEEL---- 200
V V + S ++++ G+ A G E I ++ ++++
Sbjct: 90 TVSVLNRKTNEQFEESYDKLILSPGASA---NSLGFESDITFTLRNLEDTDAIDQFIKAN 146
Query: 201 -PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259
+ +V+G GY+++E G L+ R + + D +M + L+ R I
Sbjct: 147 QVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPY 206
Query: 260 HPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319
I + G ++ G+ D+++ G PN+K +++ +++D+ G +
Sbjct: 207 RLNEEINAI----NGNEITFKSGKVEHYDMIIEGVGTHPNSK-F-IESSNIKLDRKGFIP 260
Query: 320 VDENSRTNVPSIWAVGD-------VTNRMNLTP---VALMEGTCFAKTVFGGQPCKPDYR 369
V++ TNVP+I+A+GD + P A + A+ + G + ++
Sbjct: 261 VNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIE--FK 318
Query: 370 DVPC-AVFCIPPLSV--VGLSEEQAIEQGKGDILVFTSS---FNPMRNTISGRQEKTVMK 423
+ + VG+ + + + V + + P ++
Sbjct: 319 GFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYP-------GNSPLHLR 371
Query: 424 LVVDAETEKVLGASMCGPEAPEIMQGI---AVALKCGAT 459
+ D ++L A+ G E + I ++A+ T
Sbjct: 372 VYYDTSNRQILRAAAVGKE--GADKRIDVLSMAMMNQLT 408
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 2e-42
Identities = 76/345 (22%), Positives = 128/345 (37%), Gaps = 55/345 (15%)
Query: 151 EVEVTQL-DGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEALSLEEL---- 200
+V V L G + + ++I+ G+ IPG++L A+ L++
Sbjct: 88 QVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDP 147
Query: 201 -PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGIN 258
VV+G GYI +E A + G V ++ + PL D E V+ +E I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 259 LHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318
+ T++ KV+TD AD+V+ A G PNT +E+ G +
Sbjct: 208 IATGETVERYEGDGRVQKVVTD-KNAYDADLVVVAVGVRPNTA---WLKGTLELHPNGLI 263
Query: 319 KVDENSRTNVPSIWAVGD-------VTNRMNLTP---VALMEGTCFAKTVFGGQPCKPDY 368
K DE RT+ P ++AVGD + A +G K + +
Sbjct: 264 KTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEP---VKPF 320
Query: 369 RDVPC-AVFCIPPLSV--VGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ-------- 417
V + + G++E A + G T+
Sbjct: 321 PGVQGSSGLAVFDYKFASTGINEVMAQKLG----------KETKAVTVVEDYLMDFNPDK 370
Query: 418 EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGI---AVALKCGAT 459
+K KLV D ET ++LGA + ++ I ++A++ T
Sbjct: 371 QKAWFKLVYDPETTQILGAQLMSKA--DLTANINAISLAIQAKMT 413
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 3e-42
Identities = 69/343 (20%), Positives = 130/343 (37%), Gaps = 52/343 (15%)
Query: 151 EVEVTQL-DGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEALSLEEL---P 201
++V L + + + +++ TGS+ PIPG + + ++A L E
Sbjct: 90 TIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKA 149
Query: 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLH 260
K ++G GYI E A + V+L+ E L + FD E ++A++ E G+NL
Sbjct: 150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLV 209
Query: 261 PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320
+ + + ++ + T G+EI +D+ + G PNT+ L V + GA+
Sbjct: 210 LGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTE---LLKGKVAMLDNGAIIT 266
Query: 321 DENSRTNVPSIWAVGD-------VTNRMNLTP---VALMEGTCFAKTVFGGQPCKPDYRD 370
DE ++ I+A GD TN P A+ +G + K
Sbjct: 267 DEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTED---KVKDMG 323
Query: 371 VPC-AVFCIPPLSV--VGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ--------EK 419
+ + + G++ A I+ ++
Sbjct: 324 TQSSSGLKLYGRTYVSTGINTALAKANN----------LKVSEVIIADNYRPEFMLSTDE 373
Query: 420 TVMKLVVDAETEKVLGASMCGPEAPEIMQGI---AVALKCGAT 459
+M LV D +T +LG ++ ++ Q +V ++ T
Sbjct: 374 VLMSLVYDPKTRVILGGALSSMH--DVSQSANVLSVCIQNKNT 414
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 4e-41
Identities = 84/337 (24%), Positives = 138/337 (40%), Gaps = 66/337 (19%)
Query: 170 LIATGSRAQRAPIPGQELAITSDEALSL---------------------EELPKRAVVLG 208
+ ATGS+ PI G E+ S E + + KR V+G
Sbjct: 142 IFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVG 201
Query: 209 GGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPRTTIKE 267
GYI VE A ++ G V L+ + L +D ++ ++A+N+E GI L T+KE
Sbjct: 202 AGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKE 261
Query: 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTN 327
+ + + K+ITD E D+V+ A G PNT L +++ + GA V++ T+
Sbjct: 262 VAGNGKVEKIITD-KNEYDVDMVILAVGFRPNTT---LGNGKIDLFRNGAFLVNKRQETS 317
Query: 328 VPSIWAVGD-------VTNRMNLTP---VALMEGTCFAKTVFGGQPCKPDYRDVPC-AVF 376
+P ++A+GD T N A+ G A G + V
Sbjct: 318 IPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGT---DLEGIGVQGSNGI 374
Query: 377 CIPPLSV--VGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ---------EKTVMKLV 425
I L + GL+ E+A G F+ + Q +K+V
Sbjct: 375 SIYGLHMVSTGLTLEKAKRLG----------FDAAVTEYTDNQKPEFIEHGNFPVTIKIV 424
Query: 426 VDAETEKVLGASMCGPEAPEIMQGI---AVALKCGAT 459
D ++ ++LGA M E ++ GI ++A++ G T
Sbjct: 425 YDKDSRRILGAQMAARE--DVSMGIHMFSLAIQEGVT 459
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 4e-40
Identities = 79/363 (21%), Positives = 142/363 (39%), Gaps = 71/363 (19%)
Query: 151 EVEVTQL-DGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEALSLEEL---- 200
V V +L DG++ S +L++ G+ PIPG + + + + +
Sbjct: 90 LVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMN 149
Query: 201 -PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259
+ A V+GGG+I +E +G LL + + D EM + + +G++L
Sbjct: 150 NVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDL 209
Query: 260 HPRTTIKELIKSEE-------------------GVKVITDHGEEIVADVVLFATGRAPNT 300
T + E+ + + + +GE + D+++ A G P T
Sbjct: 210 RLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPET 269
Query: 301 KRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD-------VTNRMNLTP---VALME 350
+ L + G+ + + G +KV+ +T+ P+I+AVGD VT + L P A +
Sbjct: 270 Q-L-ARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQ 327
Query: 351 GTCFAKTVFGGQPCKPDYRDVPC-AVFCIPPLSV--VGLSEEQAIEQGKGDILVFTSSFN 407
G A +FG + Y+ A+ + L+V G +E+Q + G
Sbjct: 328 GRMAADNMFGR---EERYQGTQGTAICKVFDLAVGATGKNEKQLKQAG----------IA 374
Query: 408 PMRNTISGRQ--------EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGI---AVALKC 456
+ + E KL+ D + GA G + I + I AVA +
Sbjct: 375 FEKVYVHTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKD--GIDKRIDVMAVAQRA 432
Query: 457 GAT 459
G T
Sbjct: 433 GMT 435
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 1e-35
Identities = 59/238 (24%), Positives = 92/238 (38%), Gaps = 27/238 (11%)
Query: 153 EVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEALSL-EELP--KRA 204
++ DGT LS I+IATGSRA+ +PG +L T + L + R
Sbjct: 89 TISLDDGTTLSAD--AIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRL 146
Query: 205 VVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPRT 263
+++GGG I E A+ R +G +V +L + L R + A + L G+ + T
Sbjct: 147 LIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGT 206
Query: 264 TIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDEN 323
+ + +V+ G VAD L G P +L + G+ D V VD
Sbjct: 207 GVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPAD-QL-ARQAGLACD--RGVIVDHC 262
Query: 324 SRTNVPSIWAVGDVTNRMNLT---------PVALMEGTCFAKTVFGGQPCKPDYRDVP 372
T ++AVGDV + A + A + G +P
Sbjct: 263 GATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKN---VSAPQLP 317
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-34
Identities = 59/239 (24%), Positives = 96/239 (40%), Gaps = 31/239 (12%)
Query: 153 EVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEALSL-EELP--KRA 204
V DG L Y +++ATG+ + P T ++A + L R
Sbjct: 91 TVALSDGRTLPYG--TLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRL 148
Query: 205 VVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPRT 263
+++GGG I +E A+ R G V L+ + + R + VAR +G++L
Sbjct: 149 LIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFER 208
Query: 264 TIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDEN 323
++ V+ D G I AD+V+ G N L +A G+ D + VD
Sbjct: 209 SVTGS----VDGVVLLDDGTRIAADMVVVGIGVLAND-AL-ARAAGLACD--DGIFVDAY 260
Query: 324 SRTNVPSIWAVGDVTNRMNLT----------PVALMEGTCFAKTVFGGQPCKPDYRDVP 372
RT P ++A+GDVT + N A +G A+ + P Y ++P
Sbjct: 261 GRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA--PGYAELP 317
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-34
Identities = 61/242 (25%), Positives = 90/242 (37%), Gaps = 31/242 (12%)
Query: 153 EVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEAL----SLEELPKR 203
V DG+ + Y ++ ATG +R G +LA T ++A L+ K
Sbjct: 97 TVKLGDGSAIEYG--KLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKN 154
Query: 204 AVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPR 262
AVV+GGGYI +E A++ G V LL L R + + G++L
Sbjct: 155 AVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTG 214
Query: 263 TTIKELIKSEEGVK-VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD 321
+ + V V G I AD+V+ G P L + G V VD
Sbjct: 215 AAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV-GA-LISAGASGG--NGVDVD 270
Query: 322 ENSRTNVPSIWAVGDVTNRMNLT-----------PVALMEGTCFAKTVFGGQPCKPDYRD 370
E RT++ ++A+GD N A T AK + G Y+
Sbjct: 271 EFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP---VPYKA 327
Query: 371 VP 372
P
Sbjct: 328 TP 329
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 2e-34
Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 29/240 (12%)
Query: 153 EVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEALSL-EELP--KRA 204
++ GT + Y H+++ATG+R + +P L T DE+ L + +P K
Sbjct: 88 KLLLASGTAIEYG--HLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHV 145
Query: 205 VVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPRT 263
VV+G G+I +EFA+ R G VD++ + R E+ + G GI +H
Sbjct: 146 VVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGV 205
Query: 264 TIKELIKSEEGVK-VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDE 322
E+ + V V+ G + D+V+ G PN + A G+ + VD+
Sbjct: 206 RATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNV-EI-AAAAGLPTA--AGIIVDQ 261
Query: 323 NSRTNVPSIWAVGDVTNRMNLT----------PVALMEGTCFAKTVFGGQPCKPDYRDVP 372
T+ P I A+GD ++ A + C A + G Y P
Sbjct: 262 QLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA---KPYDGYP 318
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 6e-34
Identities = 61/245 (24%), Positives = 97/245 (39%), Gaps = 34/245 (13%)
Query: 153 EVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAI--------TSDEALSL-EELP-- 201
+V DG L Y +++ATG R + P+ + T ++A + +L
Sbjct: 92 QVILSDGRALDYD--RLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIAD 149
Query: 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLH 260
R VV+GGGYI +E A+ V LL L R + A G+++
Sbjct: 150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIR 209
Query: 261 PRTTIKELIKSEEGVK---VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGA 317
T + S + K V+ + G + AD+V+ G PN L A G++VD
Sbjct: 210 TGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNC-EL-ASAAGLQVD--NG 265
Query: 318 VKVDENSRTNVPSIWAVGDVTNRMNLT----------PVALMEGTCFAKTVFGGQPCKPD 367
+ ++E+ +T+ P I AVGD + P AL + A + G P
Sbjct: 266 IVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV---PR 322
Query: 368 YRDVP 372
P
Sbjct: 323 DEAAP 327
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 3e-32
Identities = 74/398 (18%), Positives = 140/398 (35%), Gaps = 76/398 (19%)
Query: 12 SQPNQEEQTHFDFDLFVIGAGSGGVRAARF--SANFGAKVGIC----ELPFH--PISSEV 63
P + +H F +IG G+ AAR + + GA+V I ELP+ P+S
Sbjct: 2 EVPQDKAPSHVPF--LLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLS--- 56
Query: 64 IGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILR 123
K++ + +
Sbjct: 57 ---------------KELWF------SDDPNVTKTLRFKQWNGKERSIYFQ----PPSFY 91
Query: 124 LNGIYKRLLSNAGVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181
++ + N GV + G+ K+V + V DG++++Y LIATG +
Sbjct: 92 VSAQDLPHIENGGVAVLTGK-KVVQLDVRDNMVKLNDGSQITYE--KCLIATGGTPRSLS 148
Query: 182 I---PGQELAI------TSDEALSLEEL---PKRAVVLGGGYIAVEFAS----IWRGMGS 225
G E+ + SLE++ K ++GGG++ E A R +G+
Sbjct: 149 AIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGT 208
Query: 226 TVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEE 284
V LF ++ + + + + + G+ + P ++ + S + + G +
Sbjct: 209 EVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRK 268
Query: 285 IVADVVLFATGRAPNTKRLNLKAVGVEVD-QTGAVKVDENSRTNVPSIWAVGDVTNRMNL 343
+ D ++ A G PN + L K G+E+D G +V+ + +IW GD ++
Sbjct: 269 VETDHIVAAVGLEPNVE-L-AKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDI 325
Query: 344 T---------PVALMEGTCFAKTVFGGQPCKPDYRDVP 372
A++ G + + G Y
Sbjct: 326 KLGRRRVEHHDHAVVSGRLAGENMTGA---AKPYWHQS 360
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-29
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 26/208 (12%)
Query: 157 LDGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEALSLEEL---PKRAVVLG 208
+ ++ Y +++A G+ R P+ G ++ + +R ++LG
Sbjct: 95 IGEEEVRYR--DLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLG 152
Query: 209 GGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPRTTIKE 267
G I EFA+ G +D++ E + V LEG G+ H +
Sbjct: 153 AGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLAS 212
Query: 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNL-KAVGVEVDQTGAVKVDENSRT 326
L K+ EG++ GE I D+V+ A G P T+ L A G+ V+ + VD + RT
Sbjct: 213 LKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTE---LAFAAGLAVN--RGIVVDRSLRT 267
Query: 327 NVPSIWAVGDVTNRMNLTPVALMEGTCF 354
+ +I+A+GD A ++G
Sbjct: 268 SHANIYALGD---------CAEVDGLNL 286
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 33/240 (13%)
Query: 136 GVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAI---T 190
+K+ E PN VT G K+ Y ++IA+GS A + +P + +
Sbjct: 76 NIKVITSE-FATSIDPNNKLVTLKSGEKIKYE--KLIIASGSIANKIKVPHADEIFSLYS 132
Query: 191 SDEALSLEEL---PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRA 246
D+AL +++ +A ++GGG + +E A G+ + E PL R D +
Sbjct: 133 YDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGL 192
Query: 247 VVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLK 306
+ L+ GI ++ + +E+ G+ I + V+ A G PN +K
Sbjct: 193 FLKDKLDRLGIKIYTNSNFEEM-------------GDLIRSSCVITAVGVKPNL-DF-IK 237
Query: 307 AVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMN----LTPVALMEGTCFAKTVFGGQ 362
+ + V+++ T++ I+A GDV L +A +G G
Sbjct: 238 DTEIASK--RGILVNDHMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED 295
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 23/193 (11%)
Query: 153 EVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVV 206
V G + Y +++ATG+RA+ I G+E +T +D E A++
Sbjct: 92 VVITEKGE-VPYD--TLVLATGARAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAII 148
Query: 207 LGGGYIAVEFASIWRGMGSTVDLLFRKELP--LRGFDDEMRAVVARNLEGRGINLHPRTT 264
+GGG+I +E A G V L+ G D+E+ ++ LE G+ +
Sbjct: 149 IGGGFIGLELAGNLAEAGYHVKLI---HRGAMFLGLDEELSNMIKDMLEETGVKFFLNSE 205
Query: 265 IKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS 324
+ E V+T+ I V + A G PN L + G+ + +D+N
Sbjct: 206 LLEA----NEEGVLTN-SGFIEGKVKICAIGIVPNVD-L-ARRSGIHTG--RGILIDDNF 256
Query: 325 RTNVPSIWAVGDV 337
RT+ ++A+GD
Sbjct: 257 RTSAKDVYAIGDC 269
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 2e-22
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 47/228 (20%)
Query: 136 GVKLYEGEGKIVGPNE---VEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSD 192
V YE ++ E+ D T Y A+ +L+ATG + + IP
Sbjct: 75 SVHYYEKTVVMITKQSTGLFEIVTKDHT--KYLAERVLLATGMQEEFPSIPN-------- 124
Query: 193 EALSLEEL--------P---------KRAVVLGGGY-IAVEFASIWRGMGSTVDLLFRKE 234
+ E P + +++ + + + + +
Sbjct: 125 ----VREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATN-- 178
Query: 235 LPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-VITDHGEEIVADVVLFA 293
+E+ + L + I + +I+ L +K V G I
Sbjct: 179 ------GNELSQTIMDELSNKNIPVIT-ESIRTLQGEGGYLKKVEFHSGLRIERAGGFIV 231
Query: 294 TGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRM 341
+ + + +G E+ G +D+ RT+ +I+ G+ T +
Sbjct: 232 PTFFRPNQFI--EQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQG 277
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 5e-21
Identities = 37/220 (16%), Positives = 64/220 (29%), Gaps = 48/220 (21%)
Query: 153 EVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEEL--------P--- 201
V G +A +++A G + I G L E P
Sbjct: 90 IVEIDGGR--RETAGRLILAMGVTDELPEIAG------------LRERWGSAVFHCPYCH 135
Query: 202 ------KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255
+ V+ +A+ A + G T E A L R
Sbjct: 136 GYELDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGI--------VEPDADQHALLAAR 187
Query: 256 GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQT 315
G+ + T I+E+ V+ G I + + + +G V++
Sbjct: 188 GVRVET-TRIREIAGHA---DVVLADGRSIALAGLFTQPKLRITVDWI--EKLGCAVEEG 241
Query: 316 ---GAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGT 352
+ D +T I+A GDV +A+ +G
Sbjct: 242 PMGSTIVTDPMKQTTARGIFACGDVARPAGSVALAVGDGA 281
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 74/351 (21%), Positives = 119/351 (33%), Gaps = 84/351 (23%)
Query: 10 ELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGG-VG 68
L + EE+ DFD+ ++GAG+ G AA ++A G V I + V GG
Sbjct: 4 NLHAVSSEEKER-DFDVVIVGAGAAGFSAAVYAARSGFSVAI-------LDKAVAGGLTA 55
Query: 69 GTCVIR---GCVPKKILVYGASFGGELED-ARSYGWEVHEKIDFDWKKLLQKKTDEILRL 124
++ G + G+ D A +Y + E+ +
Sbjct: 56 EAPLVENYLG-FKS---IVGSELAKLFADHAANYAKIR--------------EGVEVRSI 97
Query: 125 NGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG 184
G + N+ Y AK+++I TG+ + + G
Sbjct: 98 K--------------KTQGGFDIETNDDT----------YHAKYVIITTGTTHKHLGVKG 133
Query: 185 -QELA-------ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236
E T D L KR V +GGG A V ++
Sbjct: 134 ESEYFGKGTSYCSTCDGYLFKG---KRVVTIGGGNSGAIAAISMSEYVKNVTIIEY---- 186
Query: 237 LRGFDDEMRA--VVARNLEGRGINLHPRTTIKELIKSEEGVK------VITDHGEEIVAD 288
+ + ++ R I + E++ + V T + I D
Sbjct: 187 ----MPKYMCENAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETD 242
Query: 289 VVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN 339
V G P T L K GV++D+ G + VD RT+VP ++A GDVT+
Sbjct: 243 GVFIYVGLIPQTSFL--KDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTS 291
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 8e-15
Identities = 69/356 (19%), Positives = 116/356 (32%), Gaps = 81/356 (22%)
Query: 6 LNDGELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIG 65
++ G + + +D+ ++G+G G AA +SA G + G+ E G
Sbjct: 195 VDTGAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMG--------ERFG 246
Query: 66 G-VGGTCVIR---GCVPKKILVYGASFGGELED-ARSYGWEVHEKIDFDWKKLLQKKTDE 120
G V T I VPK G G L+ Y +V +
Sbjct: 247 GQVLDTVDIENYIS-VPK---TEGQKLAGALKAHVSDYDVDVID--------SQSASKLV 294
Query: 121 ILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180
G + ++ G A+ I+IATG++ +
Sbjct: 295 PAATEGGLHQ------IETASGA-------------------VLKARSIIIATGAKWRNM 329
Query: 181 PIPG-QELA-------ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFR 232
+PG + D L KR V+GGG VE A G+ V LL
Sbjct: 330 NVPGEDQYRTKGVTYCPHCDGPLFKG---KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF 386
Query: 233 KELPLRGFDDEMRA---VVARNLEGRGINLHPRTTIKELIKSEEGVK------VITDHGE 283
EM+A + + + +++ E+ V ++
Sbjct: 387 A--------PEMKADQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIH 438
Query: 284 EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN 339
+ + G PNT L +E ++ G + +D T+V ++A GD T
Sbjct: 439 SVALAGIFVQIGLLPNTHWLEGA---LERNRMGEIIIDAKCETSVKGVFAAGDCTT 491
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 8e-14
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 27/204 (13%)
Query: 153 EVTQLDGTKLSYSAKHILIATGSRA---QRAPIPGQEL--------AITSDEALSLEELP 201
+VT G Y+AK ++IA G A +R PG+ A+ S
Sbjct: 99 KVTTSQGNA--YTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEFQ----G 152
Query: 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261
KR +++GGG AV++A + L+ R+ R + ++ ++ + EGR + +
Sbjct: 153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ-FRAHEASVKELMKAHEEGR-LEVLT 210
Query: 262 RTTIKELIKSEEGVKVITDHGE-----EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTG 316
++ + E + H + + D VL G L G+ +++
Sbjct: 211 PYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLG--PLANWGLALEK-N 267
Query: 317 AVKVDENSRTNVPSIWAVGDVTNR 340
+KVD T++P ++A GD+
Sbjct: 268 KIKVDTTMATSIPGVYACGDIVTY 291
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 28/204 (13%)
Query: 153 EVTQLDGTKLSYSAKHILIATGSRA---QRAPIPGQEL---------AITSDEALSLEEL 200
E G Y ++ +LIA G A ++ P G A+ S E
Sbjct: 109 ETRTNTGNV--YRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFK---- 162
Query: 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260
KR V++GGG A+++ ++V L+ R +G V G I+++
Sbjct: 163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGH-EFQGHGKTAHEVERARANGT-IDVY 220
Query: 261 PRTTIKELI---KSEEGVKVITDHGEE--IVADVVLFATGRAPNTKRLNLKAVGVEVDQT 315
T + + V + + G + + AD +L G N L +E+ +
Sbjct: 221 LETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLG--PLARWDLELYE- 277
Query: 316 GAVKVDENSRTNVPSIWAVGDVTN 339
A+ VD + +T+V ++A GD+
Sbjct: 278 NALVVDSHMKTSVDGLYAAGDIAY 301
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 29/192 (15%)
Query: 164 YSAKHILIATGSRAQRAPIPG-QELA-------ITSDEALSLEELPKRAVVLGGGYIAVE 215
+ A +++ G + ++ +PG QE A +D L + V+GGG A+E
Sbjct: 112 FKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKN---RVVAVIGGGDSALE 168
Query: 216 FASIWRGMGSTVDLLFRKELPLRGFDDEMRA---VVARNLEGRGINLHPRTTIKELIKSE 272
A I + V L+ R+ D +A V + + + +KE+ +
Sbjct: 169 GAEILSSYSTKVYLIHRR--------DTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDK 220
Query: 273 --EGVK---VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTN 327
+ V + T +E+ + V G P T K+ G+E D G +KVDE RT+
Sbjct: 221 VVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFA--KSNGIETDTNGYIKVDEWMRTS 278
Query: 328 VPSIWAVGDVTN 339
VP ++A GD T+
Sbjct: 279 VPGVFAAGDCTS 290
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 36/196 (18%), Positives = 79/196 (40%), Gaps = 33/196 (16%)
Query: 163 SYSAKHILIATGSRA---QRAPIPGQEL--------AITSDEALSLEELPKRAVVLGGGY 211
++ +K ++I G+ A ++ + E + + + +R +LGGG
Sbjct: 109 THYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDDLQKFA----GRRVAILGGGD 164
Query: 212 IAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA--RNLEGRGINLHPRTTIKELI 269
AV++A + + V ++ R+ D+ RA NL +N+ ELI
Sbjct: 165 SAVDWALMLEPIAKEVSIIHRR--------DKFRAHEHSVENLHASKVNVLTPFVPAELI 216
Query: 270 KSE--EGVKVITDHGEE---IVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS 324
+ E + + G+ + D ++ G + +K G+++++ ++ V
Sbjct: 217 GEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLG--PIKNWGLDIEK-NSIVVKSTM 273
Query: 325 RTNVPSIWAVGDVTNR 340
TN+ +A GD+
Sbjct: 274 ETNIEGFFAAGDICTY 289
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 1e-12
Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 47/203 (23%)
Query: 163 SYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAV----------------- 205
+ AK +++ TGS ++A G++ E + V
Sbjct: 104 TELAKAVIVCTGSAPKKAGFKGED------------EFFGKGVSTCATCDGFFYKNKEVA 151
Query: 206 VLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA---VVARNLEGRGINLHPR 262
VLGGG A+E A + S + L+ R+ DE RA V + + I L
Sbjct: 152 VLGGGDTALEEALYLANICSKIYLIHRR--------DEFRAAPSTVEKVKKNEKIELITS 203
Query: 263 TTIKELIKSEEGV-----KVITDHGEEIVADVVLFATGRAPNTKRLN--LKAVGVEVDQT 315
++ E+ + GV K+ ++ + G + L +++
Sbjct: 204 ASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEG 263
Query: 316 GAVKVDENSRTNVPSIWAVGDVT 338
G V VD +T+V ++A GD+
Sbjct: 264 GQVSVDLKMQTSVAGLFAAGDLR 286
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 53/320 (16%), Positives = 97/320 (30%), Gaps = 70/320 (21%)
Query: 79 KKILVYGASFGG-----ELEDARSYGWE---VHEKIDFDWKKLL------QKKTDEILRL 124
K+LV G FG L+ + +++ ++ L + DE+
Sbjct: 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVD 61
Query: 125 NGIYKRLLSNAGVKLYEGEGKIVGP--NEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182
L G++ EG + + + V T+ DG+ ++++ G+ +
Sbjct: 62 ---LSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELV 118
Query: 183 PGQELAITS----DEALS----LEELPKRAVVLGGGYIAVEFASIWRGMGSTV------- 227
G + S + A LE + +G G + + V
Sbjct: 119 KGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSAC 178
Query: 228 -----------DLLFRK--------------ELPLRGFDDEMRAVVARNLEGRGINLHPR 262
F+K L R VA GI L
Sbjct: 179 EGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHN 238
Query: 263 TTIKELIKSEEGVKVITDHGEEIVADVVLFATG-RAPNTKRLNLKAVGVEV-DQTGAVKV 320
IKE+ +++ + G I AD+ + LK ++ D G +
Sbjct: 239 FKIKEI----REHEIVDEKGNTIPADITILLPPYTGNPA----LKNSTPDLVDDGGFIPT 290
Query: 321 DENSR-TNVPSIWAVGDVTN 339
D N +++AVGD +
Sbjct: 291 DLNMVSIKYDNVYAVGDANS 310
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 1e-11
Identities = 45/204 (22%), Positives = 72/204 (35%), Gaps = 48/204 (23%)
Query: 163 SYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAV----------------- 205
++ AK ++IATG +R I G+ E + V
Sbjct: 100 TFEAKSVIIATGGSPKRTGIKGES------------EYWGKGVSTCATCDGFFYKNKEVA 147
Query: 206 VLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA---VVARNLEGRGINLHPR 262
VLGGG AVE A + V L+ R+ D R + I
Sbjct: 148 VLGGGDTAVEEAIYLANICKKVYLIHRR--------DGFRCAPITLEHAKNNDKIEFLTP 199
Query: 263 TTIKELIKSEEGVK------VITDHGEEIVADVVLFATGRAPNTKRLN--LKAVGVEVDQ 314
++E+ GV T+ E+V G N L ++ + D+
Sbjct: 200 YVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDE 259
Query: 315 TGAVKVDENSRTNVPSIWAVGDVT 338
G++ VD + +TNV ++A GD+
Sbjct: 260 YGSIVVDFSMKTNVQGLFAAGDIR 283
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 7e-11
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 32/199 (16%)
Query: 157 LDGTKLSYSAKHILIATGSRAQRAPIPG-QELA-------ITSDEALSLEELPKRAVVLG 208
+ G Y AK +++ATG+ ++ IPG T D K+ VV+G
Sbjct: 103 VRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGFFYKG---KKVVVIG 159
Query: 209 GGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA---VVARNLEGRGINLHPRTTI 265
GG AVE V ++ R+ D +RA AR + T +
Sbjct: 160 GGDAAVEEGMFLTKFADEVTVIHRR--------DTLRANKVAQARAFANPKMKFIWDTAV 211
Query: 266 KELIKSEEGVK------VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319
+E I+ + V + T E+ D V G PNT + V + G V
Sbjct: 212 EE-IQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT---VSLRDDGYVD 267
Query: 320 VDENSRTNVPSIWAVGDVT 338
V + TN+P ++A GDV+
Sbjct: 268 VRDEIYTNIPMLFAAGDVS 286
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 64/339 (18%), Positives = 107/339 (31%), Gaps = 83/339 (24%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCV---P-- 78
+D+ ++G+G G AA +SA G + G+ GG + +
Sbjct: 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMG-----------ERFGGQILDTVDIENYISV 50
Query: 79 KKILVYGASFGGELED-ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGV 137
K G G L+ Y +V + G + +
Sbjct: 51 PKTE--GQKLAGALKVHVDEYDVDV--------IDSQSASKLIPAAVEGGLHQ------I 94
Query: 138 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELA-------I 189
+ G A+ I++ATG++ + +PG +
Sbjct: 95 ETASGA-------------------VLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCP 135
Query: 190 TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA--- 246
D L KR V+GGG VE A G+ V LL EM+A
Sbjct: 136 HCDGPLFKG---KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA--------PEMKADQV 184
Query: 247 VVARNLEGRGINLHPRTTIKELIKSEEGVK------VITDHGEEIVADVVLFATGRAPNT 300
+ + + +++ E+ V ++ I + G PNT
Sbjct: 185 LQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNT 244
Query: 301 KRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN 339
L VE ++ G + +D TNV ++A GD T
Sbjct: 245 NWLEGA---VERNRMGEIIIDAKCETNVKGVFAAGDCTT 280
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 37/211 (17%)
Query: 149 PNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAI--------TSDEALSL--- 197
P ++ + + + I++ATG+ A+R +PG+E D A+ +
Sbjct: 115 PFKLWTEFNEDAE-PVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRN 173
Query: 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA---VVARNLEG 254
+ L V+GGG A E A GS V +L RK D +RA + R +
Sbjct: 174 KPL----AVIGGGDSACEEAQFLTKYGSKVFMLVRK--------DHLRASTIMQKRAEKN 221
Query: 255 RGINLHPRTTIKELIKSEEGVK------VITDHGEEIVADVVLFATGRAPNTKRLNLKAV 308
I + T E + + + ++ + +A G P TK + +
Sbjct: 222 EKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQ-- 279
Query: 309 GVEVDQTGAVKVDENS-RTNVPSIWAVGDVT 338
V+ D+ G +K S T+VP +A GDV
Sbjct: 280 -VDTDEAGYIKTVPGSSLTSVPGFFAAGDVQ 309
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 53/263 (20%), Positives = 94/263 (35%), Gaps = 55/263 (20%)
Query: 131 LLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS-RAQRAPIPG----- 184
L+ + GVK+ G K + NE+ + L + Y A I G + I
Sbjct: 247 LMKDLGVKIICG--KSLSENEITLNTL--KEEGYKA--AFIGIGLPEPKTDDIFQGLTQD 300
Query: 185 ---------------QELAITSDEALSLEELPKRAVVLGGGYIAVEFA-SIWRGMGST-V 227
A L + +VLG G A + A S R G+ V
Sbjct: 301 QGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALR-CGARRV 359
Query: 228 DLLFRKELPLRGFDDEMRAVVA--RNLEGRGINLHPRTTIKELIKSEEGVKVIT------ 279
L+FR +GF +RAV + P + +++I + +
Sbjct: 360 FLVFR-----KGFV-NIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQ 413
Query: 280 --------DHGEEIV--ADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS-RTNV 328
D + + ADVV+ A G ++ ++ ++ +VD + +T+
Sbjct: 414 DETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSE 473
Query: 329 PSIWAVGDVTNRMNLTPVALMEG 351
P ++A GD+ N T ++ +G
Sbjct: 474 PWVFAGGDIVGMANTTVESVNDG 496
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 4e-10
Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 31/192 (16%)
Query: 164 YSAKHILIATGSRAQRAPIPGQELAI--------TSDEALSLEELPKRAVVLGGGYIAVE 215
+ A+ +++A G+ A+ +PG++ + T D + + V+GGG A+E
Sbjct: 113 HRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGFFFRD---QDIAVIGGGDSAME 169
Query: 216 FASIWRGMGSTVDLLFRKELPLRGFDDEMRA---VVARNLEGRGINLHPRTTIKELIKSE 272
A+ +V L+ R+ DE RA ++ R I T+ +
Sbjct: 170 EATFLTRFARSVTLVHRR--------DEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDT 221
Query: 273 --EGVKV---ITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS-RT 326
G++V T + V A G P + + ++VD G V V + T
Sbjct: 222 TVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREA---IDVDPDGYVLVQGRTTST 278
Query: 327 NVPSIWAVGDVT 338
++P ++A GD+
Sbjct: 279 SLPGVFAAGDLV 290
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 6e-10
Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 23/203 (11%)
Query: 153 EVTQLDGTKLSYSAKHILIATG--SRAQRAPIPGQELA-ITSDEALSLEELPKRAVVLGG 209
+ T Y A +I +ATG + ++ G + I + + + VV+GG
Sbjct: 122 TIATTTET---YHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFN----KGQYVVIGG 174
Query: 210 GYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNL--------EGRGINLHP 261
+ A GS + L D + +G I ++
Sbjct: 175 NESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNV 234
Query: 262 RTTIKELIKSEEGVKVITDHGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319
T+K++ + + D G+ + +L A ++ + V +Q +
Sbjct: 235 HYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPI--VQQLFVTTNQDIKL- 291
Query: 320 VDENSRTNVPSIWAVGDVTNRMN 342
+ T P+I+ +G N
Sbjct: 292 TTHDESTRYPNIFMIGATVENDN 314
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 43/290 (14%), Positives = 83/290 (28%), Gaps = 76/290 (26%)
Query: 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGAS 87
V+GAG G+ AAR G V + E + +GG V S
Sbjct: 396 VVGAGPSGLEAARALGVRGYDVVLAE------AGRDLGG---------------RVTQES 434
Query: 88 FGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV 147
L W ++ + + + L + +
Sbjct: 435 ALPGLSA---------------WGRVKEYREAVLAELPNVEIYR------------ESPM 467
Query: 148 GPNEVEVTQLDGTKLSYSAKHILIATGS--------RAQRAPIPGQELA--ITSDEALSL 197
+++ + + +H++ ATG+ R +P E + D+ +
Sbjct: 468 TGDDI---------VEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAG 518
Query: 198 EELPKRAVVL---GGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAV-VARNLE 253
+ VV+ Y+ A + G V ++ ++ + R L
Sbjct: 519 RLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLI 578
Query: 254 GRGINLHPRTTIKELIKSEEGVKVITDHGEE---IVADVVLFATGRAPNT 300
G+ + + GV V + + D V+ T R P
Sbjct: 579 ENGVARVTDHAVVAV--GAGGVTVRDTYASIERELECDAVVMVTARLPRE 626
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 42/202 (20%)
Query: 164 YSAKHILIATGSRAQRAPIPGQELAI------------TSDEALSL---EELPKRAVVLG 208
A +++A G+ A+R G + D A + + L V+G
Sbjct: 111 ILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPL----AVIG 166
Query: 209 GGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA---VVARNLEGRGINLHPRTTI 265
GG A+E A+ GS V ++ R+ D RA + R L I++ +++
Sbjct: 167 GGDSAMEEANFLTKYGSKVYIIHRR--------DAFRASKIMQQRALSNPKIDVIWNSSV 218
Query: 266 KELIKSE-----EGVKV---ITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGA 317
E G+KV +T ++ + FA G P TK L+ VE+D G
Sbjct: 219 VEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGG---VELDSDGY 275
Query: 318 VKVDENS-RTNVPSIWAVGDVT 338
V + +T+VP ++A GDV
Sbjct: 276 VVTKPGTTQTSVPGVFAAGDVQ 297
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 53/328 (16%), Positives = 96/328 (29%), Gaps = 105/328 (32%)
Query: 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGAS 87
V+GAG G+ A +A G +V + + SE+ GG I +P K
Sbjct: 378 VVGAGPAGLAFAINAAARGHQVTLFD-----AHSEI----GGQFNIAKQIPGK------- 421
Query: 88 FGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV 147
E + Y Y+R++ GV L
Sbjct: 422 --EEFYETLRY-----------------------------YRRMIEVTGVTLKLNH---- 446
Query: 148 GPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA--ITSDEALSLEELP-KRA 204
V QL ++A+G + PI G + ++ + L + +
Sbjct: 447 ---TVTADQLQA------FDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKV 497
Query: 205 VVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEM-------------------- 244
++G G I + A G + G D +
Sbjct: 498 AIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQI 557
Query: 245 ------------------RAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEE-I 285
+ L RG+ + P + +++ ++G+ V+ + + +
Sbjct: 558 VMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKI--DDDGLHVVINGETQVL 615
Query: 286 VADVVLFATGRAPNTKRLN-LKAVGVEV 312
D V+ G+ PN L G V
Sbjct: 616 AVDNVVICAGQEPNRALAQPLIDSGKTV 643
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 57/323 (17%), Positives = 107/323 (33%), Gaps = 57/323 (17%)
Query: 79 KKILVYGASFGG-----ELEDARSYGWEV-----HEKIDFDWKKLL------QKKTDEIL 122
+++ GA GG E+++A G EV ++ F + K+ D+I
Sbjct: 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY--FQFVPSNPWVGVGWKERDDIA 62
Query: 123 RLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182
+ + G+ + + +T DG + Y +++IATG + +
Sbjct: 63 FP---IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHY--DYLMIATGPKLAFENV 117
Query: 183 PGQELAI-------TSDEAL-------SLEELPKRAVVLGGGYI-----AVEFASI---- 219
PG + T D A +L P V+ A E+A I
Sbjct: 118 PGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASD 177
Query: 220 WRGMG---STVDLLFRKELP--LRGFDD---EMRAVVARNLEGRGINLHPRTTIKELIKS 271
+ G F P + + ++ + L+ GI + + ++ +
Sbjct: 178 LKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDN 237
Query: 272 EEGVKVITDHGEEIVADVVLFATG--RAPNTKRLNLKAVGVEVDQTGAVKVDENSR-TNV 328
+ V + + GE I V+ G + V + G V VDE+ R
Sbjct: 238 KMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKY 297
Query: 329 PSIWAVGDVTNRMNLTPVALMEG 351
+I+A G + + G
Sbjct: 298 ANIFAAGIAIAIPPVETTPVPTG 320
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 62/328 (18%), Positives = 99/328 (30%), Gaps = 87/328 (26%)
Query: 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGAS 87
++GAG G AAR G V + + ++E IGG + +
Sbjct: 394 IVGAGPSGSEAARVLMESGYTVHLTD------TAEKIGGH----LNQVAAL--------P 435
Query: 88 FGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV 147
GE R Y R I K L N +L G+ K +
Sbjct: 436 GLGEWSYHRDY------------------------RETQITKLLKKNKESQLALGQ-KPM 470
Query: 148 GPNEVEVTQLDGTKLSYSAKHILIATGSR--------AQRAPIPGQELA----ITSDEAL 195
++V L Y A ++IATG+R PIPG + + +T ++ +
Sbjct: 471 TADDV---------LQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVM 521
Query: 196 S-LEELPKRAVVLGGG--YIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNL 252
+++ KR V+L ++A A G V ++ L + R L
Sbjct: 522 DGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRL 581
Query: 253 EGRGINLHPRTTIKE-----------------LIKSEEGVKVITDHGEE--IVADVVLFA 293
+ GV + I D ++
Sbjct: 582 HELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLV 641
Query: 294 TGRAPNTKRLN-LKAVGVEVDQTGAVKV 320
TGR N LKA E + +
Sbjct: 642 TGRHSECTLWNELKARESEWAENDIKGI 669
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-07
Identities = 49/334 (14%), Positives = 99/334 (29%), Gaps = 93/334 (27%)
Query: 228 DLL------FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKS---EEGVK-- 276
D+L F + D +++++ + I +I S G
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILS------------KEEIDHIIMSKDAVSGTLRL 67
Query: 277 --VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK---VDENSRT-NVPS 330
+ EE+V V N K L + + E Q + +++ R N
Sbjct: 68 FWTLLSKQEEMVQKFV--EEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 331 IWAVGDVTNR-----------MNLTP---VAL--MEGTCFAKTVFGGQPCKPDYR---DV 371
++A +V+ R + L P V + + G KT C Y+ +
Sbjct: 125 VFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALDVCL-SYKVQCKM 180
Query: 372 PCAVF------CIPPLSV----------VGLSEEQAIEQGKGDILVFTSSFNPMRNTISG 415
+F C P +V + + + L S +R +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 416 RQEKTVMKLVVD----AETEKVLGASMCGPEAPEIM-----QGIAVALKCGATKAQF--D 464
+ + + LV+ A+ S C +I+ + + L T
Sbjct: 241 KPYENCL-LVLLNVQNAKAWNAFNLS-C-----KILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 465 STVGIHPSSAEE----FVTMRSVTRRVAAASSNP 494
++ + P + ++ R ++NP
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 6e-06
Identities = 40/257 (15%), Positives = 82/257 (31%), Gaps = 72/257 (28%)
Query: 65 GGVGGTC-VIRGCVPKKIL------VYGASFG--GELEDARSYGWEVHEKIDFDWKKLLQ 115
G G T + C+ K+ ++ + E ++ +ID +W
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 116 KKTDEILRLNGIY---KRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKH---- 168
++ LR++ I +RLL + K Y N + V L +AK
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKS---KPY--------ENCLLV--LLNV---QNAKAWNAF 262
Query: 169 -----ILIAT----------GSRAQRAPIPGQELAITSDEALSL---------EELPKRA 204
IL+ T + + + +T DE SL ++LP+
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 205 VVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTT 264
+ +++ A R +T D ++ D++ ++ +L L P
Sbjct: 323 LTTNPRRLSI-IAESIRDGLATWD-NWKHV-----NCDKLTTIIESSLN----VLEP-AE 370
Query: 265 IKELIKS----EEGVKV 277
+++ +
Sbjct: 371 YRKMFDRLSVFPPSAHI 387
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 8e-06
Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 45/219 (20%)
Query: 150 NEVEVTQ----LDGTKLSYSAKHILIATGSRAQRAPIPGQELAI--------TSDEALSL 197
N+V++ L+G Y+ ++IATG+ A+ +P +E TSD
Sbjct: 85 NKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGFFYR 144
Query: 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA-------VVAR 250
++ V+GGG AVE A + S V L+ R+ D RA ++ +
Sbjct: 145 N---QKVAVIGGGNTAVEEALYLSNIASEVHLIHRR--------DGFRAEKILIKRLMDK 193
Query: 251 NLEGRGINLHPRTTIKELIKSEEGVKVIT-------DHGEEIVADVVLFATGRAPNTKRL 303
G I LH T++E+ + GV + D+ E + + A G +PNT
Sbjct: 194 VENGN-IILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF 252
Query: 304 NLKAVGVEVD----QTGAVKVDENSRTNVPSIWAVGDVT 338
+ +E++ + + ++T++P ++A GDV
Sbjct: 253 EGQ---LELENGYIKVQSGIHGNATQTSIPGVFAAGDVM 288
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 1e-05
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 283 EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS-RTNVPSIWAVGDV 337
+ AD+V+ A G P ++V + G + VD + TN+ ++A GD+
Sbjct: 363 FTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 25/224 (11%), Positives = 53/224 (23%), Gaps = 64/224 (28%)
Query: 140 YEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAI-----TSDEA 194
V V DG +L + + ++++ G + + S
Sbjct: 155 PMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYL 214
Query: 195 LSLEEL------PKRAVVLGGGYIAVEFASIW--RGMGSTVDLLFRKE---------LPL 237
+ + P + ++GGG A E D++ R
Sbjct: 215 EHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVN 274
Query: 238 RGFDDEM------------------------------------RAVVARNLEGRG-INLH 260
F + + + G
Sbjct: 275 EVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFR 334
Query: 261 PRTTIKELIKSEEGVKVI-----TDHGEEIVADVVLFATGRAPN 299
TT++ + +G+++ + D V+ ATG
Sbjct: 335 CMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQ 378
|
| >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 38/240 (15%), Positives = 68/240 (28%), Gaps = 39/240 (16%)
Query: 132 LSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA--- 188
L G+++ + P++ V G + Y ++A G I G
Sbjct: 65 LRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGY--DRCVVAPGIELIYDKIEGYSEEAAA 122
Query: 189 ------ITSDEALS----LEELPKRAVVL-----------GGGY-IAVEFASIWRGMGST 226
++ LE++ V+ G Y A + A +
Sbjct: 123 KLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPM 182
Query: 227 VDLLFRKELPL----RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG 282
++ F + E I HP + + V T G
Sbjct: 183 SKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAFG 242
Query: 283 EEIVADVVLFATG-RAPNTKRLNLKAVGVEVDQTGAVKVDENS--RTNVPSIWAVGDVTN 339
+E ADV+ RA + G+ + G VD + + I +GD +
Sbjct: 243 DEFKADVINLIPPQRAGKI----AQIAGL-TNDAGWCPVDIKTFESSIHKGIHVIGDASI 297
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 42/280 (15%), Positives = 87/280 (31%), Gaps = 39/280 (13%)
Query: 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGAS 87
V+G G G+ AA+ + G V + E + + +GG T + + G S
Sbjct: 9 VVGGGISGMAAAKLLHDSGLNVVVLE------ARDRVGGRTYTLRNQKVKY---VDLGGS 59
Query: 88 FGGE-----LEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG 142
+ G L A+ G E ++ + + +L+ + G + + + +
Sbjct: 60 YVGPTQNRILRLAKELGLETYKVNEVE--RLIHHVKGKSYPFRGPFPPVWNPITYLDHNN 117
Query: 143 EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQ-----ELAITSDEALSL 197
+ + E+ K + + + + L +
Sbjct: 118 FWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAET 177
Query: 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK----ELPLRGFDDEMRAVVARNLE 253
E+ A+ F + G T ++ E G V R ++
Sbjct: 178 HEVS-----------ALWFLWYVKQCGGTTRIISTTNGGQERKFVGG---SGQVSERIMD 223
Query: 254 GRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFA 293
G + + + ++ E V V T + E A V+ A
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISA 263
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 43/222 (19%), Positives = 63/222 (28%), Gaps = 49/222 (22%)
Query: 153 EVTQLDGTKLSYSAKHILIATG--SRAQRAPIPGQE----LAITSDEALSLEELP-KRAV 205
V DG + A+ ++ ATG A G E + + S + R
Sbjct: 110 RVVARDGR--QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVA 167
Query: 206 VLGGGY----IAVEFA--------------------------SIWRGMGSTVDLLFRKEL 235
++GGG I E + +L
Sbjct: 168 IIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDL 227
Query: 236 PLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295
P GF D + + RG L + G E D V++ TG
Sbjct: 228 PPGGFGDIVMVPPVLDARARG-VLAAVPPPARF----SPTGMQWADGTERAFDAVIWCTG 282
Query: 296 RAPNTKRLNLKAVGVEVDQTGAVKVD--ENSRTNVPSIWAVG 335
P L + V G V+VD VPS+W +G
Sbjct: 283 FRPALSHLKGLDL---VTPQGQVEVDGSGLRALAVPSVWLLG 321
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 498 | |||
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 100.0 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 100.0 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 100.0 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 100.0 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.97 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.97 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.97 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.97 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.97 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.97 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.97 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.97 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.97 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.96 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.96 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.96 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.95 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.94 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.93 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.9 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.83 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.82 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.75 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.67 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.62 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.62 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.58 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.48 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 99.28 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.26 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 99.22 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 99.21 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 99.2 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 99.19 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.13 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 99.05 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 99.03 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 99.03 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 99.0 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.98 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 98.98 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.98 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.97 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.97 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.96 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.96 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 98.95 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.94 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.93 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.92 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.91 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.9 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.87 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.85 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.85 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.85 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.84 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 98.83 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.81 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.81 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.81 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.8 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.8 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.8 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.79 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.77 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.77 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.76 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.75 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.73 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.71 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.68 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.66 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.66 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.65 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.63 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.63 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.62 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.61 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.61 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.59 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.57 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.57 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.57 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.57 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.57 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.56 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.56 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.55 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.55 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.55 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.54 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.53 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.52 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.52 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.51 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.51 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.51 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.46 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.46 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.43 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.43 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.42 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.41 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.41 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.41 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.4 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.4 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.4 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.39 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 98.39 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.39 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.38 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 98.37 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.37 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 98.37 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 98.37 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 98.36 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.36 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 98.36 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.35 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 98.34 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.34 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 98.33 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.33 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.32 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.29 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.29 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 98.28 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.27 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 98.26 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 98.25 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 98.24 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.24 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.23 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 98.22 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.22 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.2 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.2 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.2 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.18 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.17 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.17 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 98.16 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.15 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.14 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 98.14 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.14 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.12 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.12 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.11 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.1 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.1 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.1 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.09 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 98.08 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.07 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.07 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 98.07 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.07 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.06 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 98.06 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 98.06 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.06 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.05 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 98.05 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.05 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.04 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 98.04 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 98.04 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.04 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 98.03 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 98.03 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.02 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.02 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 98.0 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 98.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.0 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 97.99 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 97.99 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.99 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 97.99 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.98 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 97.98 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 97.98 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 97.98 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 97.97 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 97.96 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.96 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.95 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 97.95 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 97.94 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 97.94 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 97.94 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 97.94 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 97.93 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.92 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.92 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.92 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 97.91 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 97.9 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.89 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.89 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 97.89 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 97.88 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.87 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 97.86 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.86 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 97.83 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 97.81 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 97.81 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.81 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 97.81 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.81 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 97.81 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 97.81 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.8 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 97.8 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 97.78 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 97.77 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 97.76 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 97.75 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 97.75 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.74 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.72 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.71 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 97.7 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 97.69 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.68 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.67 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.66 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.65 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.64 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.62 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.62 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.59 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.58 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.57 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.54 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.53 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.53 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.49 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.49 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.46 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.46 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.46 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.45 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.44 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.44 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.41 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.4 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.38 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 97.35 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.35 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 97.35 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.35 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.33 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.31 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 97.28 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 97.28 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 97.26 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 97.2 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.14 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.07 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 97.03 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 96.99 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.98 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.96 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 96.9 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 96.88 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 96.87 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.79 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 96.76 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 96.7 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 96.68 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 96.63 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.62 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 96.39 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 96.37 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 96.18 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 96.05 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 95.92 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.9 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 95.33 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.05 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.96 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 94.82 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.69 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 94.55 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 94.42 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.41 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 94.32 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 94.01 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 93.91 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 93.88 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 93.74 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 93.68 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 93.6 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 93.45 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 93.43 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 93.35 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 93.28 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 93.17 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 93.14 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 93.04 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 92.96 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 92.76 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 92.74 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 92.71 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 92.65 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 92.51 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 92.5 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 92.48 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 92.47 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 92.34 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 92.29 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 92.24 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.08 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 92.08 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 92.06 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 92.06 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 92.04 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 91.99 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 91.92 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 91.9 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 91.77 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 91.69 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 91.54 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 91.5 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 91.46 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 91.44 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 91.35 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 91.24 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 91.23 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 91.2 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 90.92 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 90.88 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 90.83 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 90.8 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 90.72 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 90.7 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 90.67 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 90.59 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 90.49 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 90.48 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 90.4 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 90.38 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 90.36 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 90.31 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.2 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 90.19 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 90.13 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 90.0 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 89.98 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 89.9 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.86 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 89.78 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 89.68 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 89.53 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 89.39 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 89.33 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 89.31 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 89.17 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 88.99 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 88.95 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 88.89 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 88.8 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 88.74 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 88.67 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 88.62 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 88.54 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 88.48 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 88.48 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 88.46 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 88.39 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 88.17 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 87.88 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 87.8 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 87.76 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 87.71 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 87.69 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 87.55 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 87.54 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 87.53 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 87.32 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 87.31 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 87.17 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 87.09 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 87.05 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 86.84 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 86.74 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 86.7 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 86.5 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 86.5 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 86.31 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 86.3 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 86.29 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 86.24 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 86.22 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 86.13 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 86.0 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 85.9 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 85.86 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 85.79 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 85.71 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 85.67 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 85.66 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 85.57 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 85.48 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 85.26 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 85.15 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 85.13 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 85.11 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 84.92 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 84.76 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 84.73 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 84.71 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 84.7 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 84.66 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 84.65 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 84.61 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 84.53 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 84.52 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 84.41 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 84.41 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 83.96 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 83.94 |
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-82 Score=652.91 Aligned_cols=456 Identities=33% Similarity=0.547 Sum_probs=383.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g~ 100 (498)
.+|||+||||||||+.||.++++.|++|+|||+.... ....++.+||+|+|+||+|+|.|+.+++..+..+ ....||+
T Consensus 41 ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~-~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi 119 (542)
T 4b1b_A 41 YDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPS-SQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGW 119 (542)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCC-TTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc-cccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCc
Confidence 3699999999999999999999999999999942111 1112567999999999999999999998887765 5667888
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCC--CceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLD--GTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~--g~~~~~~~d~liiAtG~~p~ 178 (498)
... ...+||..++.+++..++++...+...+++.+|+++.|.+.+++++++.|...+ +..+.++++++|||||++|.
T Consensus 120 ~~~-~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~ 198 (542)
T 4b1b_A 120 KFD-NLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPH 198 (542)
T ss_dssp EEE-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEEC
T ss_pred ccC-cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCC
Confidence 764 478999999999999999998888888999999999999999999999986542 34568999999999999999
Q ss_pred CCCCCCC--CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 179 RAPIPGQ--ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 179 ~p~i~g~--~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
.|+.++. +.++|++++++++++|++++|||||++|+|+|+.|+++|++||++.+ +++++.+|+++.+.+.+.|++.|
T Consensus 199 ~P~~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~~~D~ei~~~l~~~l~~~g 277 (542)
T 4b1b_A 199 IPDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRGFDQQCAVKVKLYMEEQG 277 (542)
T ss_dssp CCSSSBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSSTTSCHHHHHHHHHHHHHTT
T ss_pred CCCcccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccccccchhHHHHHHHHHHhhc
Confidence 9965444 34789999999999999999999999999999999999999999987 56788999999999999999999
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCe-EcCCCCCCCCCCeEEec
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV-KVDENSRTNVPSIWAVG 335 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i-~vd~~~~t~~~~iya~G 335 (498)
|.++++..+.++...++.+.+.+.+++.+.+|.|++|+|++||++.|+++..|+.++.++++ .+|+++|||+|||||+|
T Consensus 278 i~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiG 357 (542)
T 4b1b_A 278 VMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVG 357 (542)
T ss_dssp CEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTEEECT
T ss_pred ceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCCCeEEec
Confidence 99999999999999988899999999999999999999999999999999999999876654 78889999999999999
Q ss_pred ccCCC-CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCC-CEEEEEEecCCCcccc
Q 042564 336 DVTNR-MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKG-DILVFTSSFNPMRNTI 413 (498)
Q Consensus 336 D~~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~-~~~~~~~~~~~~~~~~ 413 (498)
||++. +++++.|.+||+++++|+++......+|..+|+++|++|++|+||+||+||+++++. ++.++...+.....+.
T Consensus 358 Dv~~~~p~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~VGlTE~eA~~~g~~~~v~~~~~~~~~~~~~~ 437 (542)
T 4b1b_A 358 DVAENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNNLEISA 437 (542)
T ss_dssp TSBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEEEECCHHHHHHHHCTTTEEEEEC---------
T ss_pred cccCCchhHHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEEEeCCHHHHHHhCCCCcEEEEEeeccchhhhh
Confidence 99976 689999999999999999998877789999999999999999999999999987443 5555555544333221
Q ss_pred ---------------ccCCceeEEEEEE-ECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHH
Q 042564 414 ---------------SGRQEKTVMKLVV-DAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477 (498)
Q Consensus 414 ---------------~~~~~~~~~kl~~-~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~ 477 (498)
....+.+|+|+++ ++++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|+|
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~i~~HPTlsE~l 517 (542)
T 4b1b_A 438 VHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHPTDAESF 517 (542)
T ss_dssp --------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC-----------
T ss_pred hhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccCCcCCCHHHHH
Confidence 1234678999985 567899999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 042564 478 VTM 480 (498)
Q Consensus 478 ~~~ 480 (498)
.++
T Consensus 518 ~~~ 520 (542)
T 4b1b_A 518 MNL 520 (542)
T ss_dssp ---
T ss_pred HHH
Confidence 986
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-75 Score=600.72 Aligned_cols=443 Identities=45% Similarity=0.798 Sum_probs=409.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+||||||+|+++|+.|++.|++|+||| +..+||+|.++||+|++.++..+.....+.....|++..
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liE----------k~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~ 74 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAE----------EFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTV 74 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEE
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEe----------CCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence 5999999999999999999999999999999 677999999999999999999999998888899998875
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC-CCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ-RAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~-~p~ 181 (498)
. ...++|..+..+.......+...+...+.+.+++++.+++.+++++.+.+. .++ ..+.||++|+|||+.|. .|+
T Consensus 75 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~-~~~--~~~~~d~lviAtG~~p~~~p~ 150 (463)
T 4dna_A 75 G-ESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLL-ASG--KTVTAERIVIAVGGHPSPHDA 150 (463)
T ss_dssp C-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEET-TTT--EEEEEEEEEECCCEEECCCTT
T ss_pred C-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEe-cCC--eEEEeCEEEEecCCCcccCCC
Confidence 4 357899999999998888888888888888899999999999988776653 344 38999999999999999 999
Q ss_pred CCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEc
Q 042564 182 IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 182 i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
+||.+.++++++++.+...+++++|||+|++|+|+|..+.++|.+|+++++.+.+++.+++++.+.+.+.+++.||++++
T Consensus 151 i~G~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 230 (463)
T 4dna_A 151 LPGHELCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILC 230 (463)
T ss_dssp STTGGGCBCHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCccccccHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEC
Confidence 99998889999999998899999999999999999999999999999999999999989999999999999999999999
Q ss_pred CccEEEEEEeCCe-EEEE-ECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCC
Q 042564 262 RTTIKELIKSEEG-VKVI-TDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN 339 (498)
Q Consensus 262 ~~~v~~i~~~~~~-~~v~-~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 339 (498)
++.|.++..++++ +.+. +.+|+ +++|.||+|+|++|+.++++++..|++++++|+|.||+++||++|+|||+|||++
T Consensus 231 ~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~~~ 309 (463)
T 4dna_A 231 EDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTD 309 (463)
T ss_dssp SCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGGGS
T ss_pred CCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEecCC
Confidence 9999999887555 6788 88888 9999999999999999988788899999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCce
Q 042564 340 RMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEK 419 (498)
Q Consensus 340 ~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (498)
.+++++.|..||+++|+||++......++..+|+++|++|+++++|+||+||+++| .++.++...|....+++....+.
T Consensus 310 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 388 (463)
T 4dna_A 310 RVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKF-QEIEVYRAEFRPMKATLSGRKEK 388 (463)
T ss_dssp SCCCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHHHS-SEEEEEEEEECCTTHHHHCCCCC
T ss_pred CCCChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEEECCCCeEEecCCHHHHHHcC-CCeEEEEEeccccchhhcCCCce
Confidence 99999999999999999999876666788899999999999999999999999985 46788888888888777677789
Q ss_pred eEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 420 TVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 420 ~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|++.+++
T Consensus 389 ~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 450 (463)
T 4dna_A 389 TIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMY 450 (463)
T ss_dssp EEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGGTCCC
T ss_pred EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988765
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-75 Score=602.35 Aligned_cols=445 Identities=40% Similarity=0.675 Sum_probs=404.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||+++|+.|++.|++|+||| +..+||+|.++||+|++.++..+.....+.....|++.
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE----------~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~ 88 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELGARAAVVE----------SHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFP 88 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCcc
Confidence 46899999999999999999999999999999 66889999999999999999999888888888888876
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC-
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA- 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p- 180 (498)
.. ...++|..+..+.......+...+...+.+.+++++.+++.+++++.+.+.. +++ +++||+||||||++|..|
T Consensus 89 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~-~g~--~~~~d~lviAtG~~p~~p~ 164 (478)
T 3dk9_A 89 SC-EGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV-SGK--KYTAPHILIATGGMPSTPH 164 (478)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEE-TTE--EEECSCEEECCCEEECCCC
T ss_pred CC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEE-CCE--EEEeeEEEEccCCCCCCCC
Confidence 54 3678999999999998888888888888889999999999998887766664 443 799999999999999999
Q ss_pred --CCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 181 --PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 181 --~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
++||.+.++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.+++.||+
T Consensus 165 ~~~i~G~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~ 244 (478)
T 3dk9_A 165 ESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVE 244 (478)
T ss_dssp TTTSTTGGGSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCE
T ss_pred cCCCCCCceeEchHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCE
Confidence 999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccEEEEEEeCCe--EEEEECC-------CeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 259 LHPRTTIKELIKSEEG--VKVITDH-------GEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~--~~v~~~~-------g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
+++++.|.++..++++ +.+.+.+ |+++++|.||+|+|++|+.+.+.++..|++++++|+|.||++++|++|
T Consensus 245 i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~ 324 (478)
T 3dk9_A 245 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVK 324 (478)
T ss_dssp EETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSST
T ss_pred EEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCC
Confidence 9999999999876555 5666664 267999999999999999997778889999999999999999999999
Q ss_pred CeEEecccCCCCCChHHHHHHHHHHHHHHhCC-CCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCC-CCEEEEEEecC
Q 042564 330 SIWAVGDVTNRMNLTPVALMEGTCFAKTVFGG-QPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGK-GDILVFTSSFN 407 (498)
Q Consensus 330 ~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~-~~~~~~~~~~~ 407 (498)
||||+|||++.+.+++.|..||+++|+||++. .....++..+|+++|++|++++||+||+||++++. .++.++...+.
T Consensus 325 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~ 404 (478)
T 3dk9_A 325 GIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFT 404 (478)
T ss_dssp TEEECGGGGCSSCCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEC
T ss_pred CEEEEEecCCCCccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEeeCCHHHHHhhCCCccEEEEEeecC
Confidence 99999999988999999999999999999986 34556888999999999999999999999998743 26778888888
Q ss_pred CCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 408 PMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 408 ~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
+..++...+.+.+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|+|.++
T Consensus 405 ~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 477 (478)
T 3dk9_A 405 PMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTL 477 (478)
T ss_dssp CGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGSC
T ss_pred cchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHhc
Confidence 8888776677889999999999999999999999999999999999999999999999999999999987643
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-75 Score=599.85 Aligned_cols=457 Identities=37% Similarity=0.610 Sum_probs=402.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||++||++|++.|++|+|||+............+||+|+++||+|+|.++..+.....+.....||+.
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~ 87 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWN 87 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcc
Confidence 46999999999999999999999999999999421111112234589999999999999999999988888888899988
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
......++|..+..+....++.+...+...+...+++++.+.+.+++++.+.|.+.+|. ..++||+||||||++|..|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~-~~~~~d~lviATGs~p~~p~ 166 (483)
T 3dgh_A 88 VDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGE-RTITAQTFVIAVGGRPRYPD 166 (483)
T ss_dssp CCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCC-EEEEEEEEEECCCEEECCCS
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCe-EEEEcCEEEEeCCCCcCCCC
Confidence 76556889999999999888888877777888899999999999999999999887764 57999999999999999999
Q ss_pred CCCC-CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 182 IPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 182 i~g~-~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
+||. +..+++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++ +.+++.+++++.+.+.+.+++.||+++
T Consensus 167 i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~-~~~l~~~d~~~~~~l~~~l~~~Gv~i~ 245 (483)
T 3dgh_A 167 IPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRGFDQQMAELVAASMEERGIPFL 245 (483)
T ss_dssp STTHHHHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEES-SCSSTTSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcccccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeC-CCCCcccCHHHHHHHHHHHHhCCCEEE
Confidence 9998 44678899998888899999999999999999999999999999998 467888999999999999999999999
Q ss_pred cCccEEEEEEeCCe-EEEEECCCe-----EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEe
Q 042564 261 PRTTIKELIKSEEG-VKVITDHGE-----EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAV 334 (498)
Q Consensus 261 ~~~~v~~i~~~~~~-~~v~~~~g~-----~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~ 334 (498)
+++.|.++..++++ +.+++.+++ ++++|.|++|+|++|+++++.++..|+++++ |+|.||++++|++|+|||+
T Consensus 246 ~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t~~~~IyA~ 324 (483)
T 3dgh_A 246 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEATNVANIYAV 324 (483)
T ss_dssp ETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBCSSTTEEEC
T ss_pred eCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCCccCCCCEEEE
Confidence 99999999875543 666665543 7999999999999999998777899999998 9999999999999999999
Q ss_pred cccC-CCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCccc
Q 042564 335 GDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNT 412 (498)
Q Consensus 335 GD~~-~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~ 412 (498)
|||+ +.+.+++.|.+||+++|+||++......++..+|+++|++|++++||+||+||+++ +...+.++...+.+..++
T Consensus 325 GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~ 404 (483)
T 3dgh_A 325 GDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFF 404 (483)
T ss_dssp STTBTTSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEEECCCGGGT
T ss_pred EcccCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEECCCccEEEeCCHHHHHhhCCCCCEEEEEEeecchhhh
Confidence 9998 56889999999999999999987666678889999999999999999999999986 223577777667665544
Q ss_pred ccc-CCceeEEEEEEECC-CCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 413 ISG-RQEKTVMKLVVDAE-TEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 413 ~~~-~~~~~~~kl~~~~~-~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
... ..+.+|+|+++|++ +++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|++.+++
T Consensus 405 ~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 475 (483)
T 3dgh_A 405 IPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLA 475 (483)
T ss_dssp TTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGGCC
T ss_pred hhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence 322 34678999999986 8999999999999999999999999999999999999999999999988754
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-74 Score=602.63 Aligned_cols=460 Identities=37% Similarity=0.668 Sum_probs=401.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|+.+|||+||||||||++||+.|++.|++|+|||+.... .......+||+|.++||+|+|.++..+.....+.....||
T Consensus 29 ~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~-~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g 107 (519)
T 3qfa_A 29 KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPT-PLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYG 107 (519)
T ss_dssp SSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCC-TTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc-ccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcC
Confidence 345799999999999999999999999999999941110 0011237899999999999999999998888888899999
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+.......++|..+..+.+...+.+...+...++..+|+++.+.+.+++++.+.|...+|+..+++||+||||||++|+.
T Consensus 108 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~ 187 (519)
T 3qfa_A 108 WKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY 187 (519)
T ss_dssp BCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence 88765568999999999998888888888888888999999999999999999998877765689999999999999999
Q ss_pred CCCCCCC-cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 180 APIPGQE-LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 180 p~i~g~~-~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
|++||.+ .++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++. .+++.+|+++.+.+.+.+++.||+
T Consensus 188 p~i~G~~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~GV~ 266 (519)
T 3qfa_A 188 LGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIK 266 (519)
T ss_dssp CCCTTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred CCCCCccCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-cccccCCHHHHHHHHHHHHHCCCE
Confidence 9999964 46788999998888999999999999999999999999999999984 678889999999999999999999
Q ss_pred EEcCccEEEEEEeC----CeEEEE--ECCC-e--EEEcCEEEEecCCCcCCCCCCcccCCceeC-CCCCeEcCCCCCCCC
Q 042564 259 LHPRTTIKELIKSE----EGVKVI--TDHG-E--EIVADVVLFATGRAPNTKRLNLKAVGVEVD-QTGAVKVDENSRTNV 328 (498)
Q Consensus 259 i~~~~~v~~i~~~~----~~~~v~--~~~g-~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~-~~g~i~vd~~~~t~~ 328 (498)
+++++.+.++...+ +.+.+. ..+| + .+++|.|++|+|++||++.+.++..|++++ ++|+|.||+++||++
T Consensus 267 v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~Ts~ 346 (519)
T 3qfa_A 267 FIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNV 346 (519)
T ss_dssp EEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBCSS
T ss_pred EEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCccCC
Confidence 99998888886543 334443 4455 2 578999999999999999887888999998 679999999999999
Q ss_pred CCeEEecccC-CCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCC-CCEEEEEEec
Q 042564 329 PSIWAVGDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGK-GDILVFTSSF 406 (498)
Q Consensus 329 ~~iya~GD~~-~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~-~~~~~~~~~~ 406 (498)
|||||+|||+ +.+.+++.|..||+++|+||++......++..+|+++|++|++++||+||+||++++. ..+.++...|
T Consensus 347 ~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~ 426 (519)
T 3qfa_A 347 PYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYF 426 (519)
T ss_dssp TTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEE
T ss_pred CCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEEEECCCceEEecCCHHHHHhhCCCCCEEEEEEec
Confidence 9999999998 6688999999999999999998776777889999999999999999999999998621 2577777777
Q ss_pred CCCccccccC-CceeEEEEEEEC-CCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 407 NPMRNTISGR-QEKTVMKLVVDA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 407 ~~~~~~~~~~-~~~~~~kl~~~~-~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
.+..++.... .+.+|+|+++|+ ++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|++.+++
T Consensus 427 ~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~ 503 (519)
T 3qfa_A 427 WPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLS 503 (519)
T ss_dssp CCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGGCC
T ss_pred cchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHH
Confidence 6655554332 467999999997 58999999999999999999999999999999999999999999999988765
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-75 Score=601.19 Aligned_cols=459 Identities=40% Similarity=0.704 Sum_probs=409.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHHh-CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSAN-FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSY 98 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 98 (498)
|+.+|||+||||||||+++|++|++ .|++|+|||++. .+..+.+..+||+|.++||+|+|.++..+.+...+.....|
T Consensus 4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~-~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~ 82 (495)
T 2wpf_A 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQT-SHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGF 82 (495)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS-SSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEeccc-ccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhc
Confidence 5556999999999999999999999 999999999321 11222356789999999999999999999888888888888
Q ss_pred Cccccccc--ccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCC----ceEEEEcCeEEE
Q 042564 99 GWEVHEKI--DFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDG----TKLSYSAKHILI 171 (498)
Q Consensus 99 g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g----~~~~~~~d~lii 171 (498)
++... .+ .++|..+..+....+.++...+...+++. +++++.+++.+++++.+.+...++ ....++||+|||
T Consensus 83 g~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lVi 161 (495)
T 2wpf_A 83 GWEFD-GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILL 161 (495)
T ss_dssp TEECC-GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEE
T ss_pred CcccC-CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEE
Confidence 88654 34 68999999999998888888888888888 999999999999998887753111 024799999999
Q ss_pred cCCCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHC---CCcEEEEeeCCCCCCCCCHHHHHHH
Q 042564 172 ATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGM---GSTVDLLFRKELPLRGFDDEMRAVV 248 (498)
Q Consensus 172 AtG~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~V~lv~~~~~~l~~~~~~~~~~l 248 (498)
|||++|+.|++||.+.++++++++.+...+++++|||+|++|+|+|..|.++ |.+|+++++.+.+++.+++++.+.+
T Consensus 162 ATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l 241 (495)
T 2wpf_A 162 ATGSWPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEV 241 (495)
T ss_dssp CCCEEECCCCCTTGGGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHH
T ss_pred eCCCCcCCCCCCCccccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHHH
Confidence 9999999999999887888999988888899999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhCCCEEEcCccEEEEEEeCC-eEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCC
Q 042564 249 ARNLEGRGINLHPRTTIKELIKSEE-GVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTN 327 (498)
Q Consensus 249 ~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~ 327 (498)
.+.+++.||++++++.|.++..+++ .+.+++.+|+++++|.||+|+|++||++.+.++++|++++++|+|.||+++||+
T Consensus 242 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t~ 321 (495)
T 2wpf_A 242 TKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN 321 (495)
T ss_dssp HHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBCS
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCccC
Confidence 9999999999999999999987654 377888899899999999999999999876678899999988999999999999
Q ss_pred CCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecC
Q 042564 328 VPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFN 407 (498)
Q Consensus 328 ~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~ 407 (498)
+|+|||+|||++.+++++.|.+||+++|+||++......+|..+|+++|++|++++||++|++|+++ +..+.+....|.
T Consensus 322 ~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~~~~~v~~~~~~ 400 (495)
T 2wpf_A 322 VPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKE-FEKVAVYMSSFT 400 (495)
T ss_dssp STTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEEEECCSSCEEEEECCHHHHHHH-SSEEEEEEEEEC
T ss_pred CCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhc-CCCEEEEEEecC
Confidence 9999999999998889999999999999999986656678889999999999999999999999987 456778888888
Q ss_pred CCccccccCCceeE-EEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 408 PMRNTISGRQEKTV-MKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 408 ~~~~~~~~~~~~~~-~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
+..+++....+.+| +|+++++++++|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|++.+++
T Consensus 401 ~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 475 (495)
T 2wpf_A 401 PLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMR 475 (495)
T ss_dssp CTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCC
T ss_pred chhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence 87777766678899 999999999999999999999999999999999999999999999999999999987654
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-74 Score=596.23 Aligned_cols=449 Identities=30% Similarity=0.493 Sum_probs=403.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhh-hhcC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELED-ARSY 98 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~ 98 (498)
++++|||+||||||||++||+.|++.|++|+|||+ ...+||+|.+.||+|++.++..+........ +..+
T Consensus 22 ~m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk---------~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~ 92 (491)
T 3urh_A 22 SMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEK---------RSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEAL 92 (491)
T ss_dssp ----CCEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred hcccCCEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhc
Confidence 33469999999999999999999999999999995 4679999999999999999999888776655 5778
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
|+... ...++|..+..+.......+...+...+.+.+++++.+.+.+++++.+.|.+.+|+...+.||+||||||++|.
T Consensus 93 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~ 171 (491)
T 3urh_A 93 GVEVA-NPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA 171 (491)
T ss_dssp TEECC-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECC
T ss_pred CcccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCC
Confidence 87654 46789999999999888888888888889999999999999999999999887776668999999999999863
Q ss_pred CCCCCCCC------cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHH
Q 042564 179 RAPIPGQE------LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNL 252 (498)
Q Consensus 179 ~p~i~g~~------~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l 252 (498)
.+||.+ .++++++...+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+
T Consensus 172 --~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l 249 (491)
T 3urh_A 172 --GIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRML 249 (491)
T ss_dssp --CBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHH
T ss_pred --CCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHH
Confidence 455543 367888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEcCccEEEEEEeCCeEEEEECC---C--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCC
Q 042564 253 EGRGINLHPRTTIKELIKSEEGVKVITDH---G--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTN 327 (498)
Q Consensus 253 ~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~ 327 (498)
++.||++++++.|.++..+++.+.+.+.+ | +++++|.||+|+|++|+.++++++..|++++++|+|.||+++||+
T Consensus 250 ~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~ 329 (491)
T 3urh_A 250 TKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTS 329 (491)
T ss_dssp HHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCS
T ss_pred HhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCC
Confidence 99999999999999999888777676652 4 579999999999999999988788899999999999999999999
Q ss_pred CCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecC
Q 042564 328 VPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFN 407 (498)
Q Consensus 328 ~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~ 407 (498)
+|+|||+|||++.+++++.|..||+++|++|++.. ...++..+|+++|++|++++||+||+||+++|+ ++.+....+.
T Consensus 330 ~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~ 407 (491)
T 3urh_A 330 IAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA-GHVNYDVIPGVVYTQPEVASVGKTEEELKAAGV-AYKIGKFPFT 407 (491)
T ss_dssp STTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSC-CCCCTTCCCEEECSSSCEEEEECCHHHHHHTTC-CEEEEEEEGG
T ss_pred CCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCC-cccCCCCCCEEEEccCCeEEEeCCHHHHHhCCC-CEEEEEEecC
Confidence 99999999999989999999999999999999854 456788899999999999999999999999865 7888888888
Q ss_pred CCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 408 PMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 408 ~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
...++...+.+.+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++++|||++|++.++..
T Consensus 408 ~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 482 (491)
T 3urh_A 408 ANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAVKEAAL 482 (491)
T ss_dssp GCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHH
T ss_pred cchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHH
Confidence 777776667788999999999999999999999999999999999999999999999999999999999988654
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-74 Score=596.65 Aligned_cols=452 Identities=38% Similarity=0.647 Sum_probs=401.6
Q ss_pred cccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhh
Q 042564 17 EEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDAR 96 (498)
Q Consensus 17 ~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~ 96 (498)
|..|+.+|||+|||||+||+++|++|++.|.+|+||| +..+||+|.+.||+|+|.++..+.....+....
T Consensus 5 m~~~~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE----------~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~ 74 (479)
T 2hqm_A 5 MSTNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVE----------AKALGGTCVNVGCVPKKVMWYASDLATRVSHAN 74 (479)
T ss_dssp -----CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTT
T ss_pred ccCccccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEe----------CCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHH
Confidence 4444457999999999999999999999999999999 456899999999999999999888777777677
Q ss_pred cCCcccc----c-ccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEE
Q 042564 97 SYGWEVH----E-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILI 171 (498)
Q Consensus 97 ~~g~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~lii 171 (498)
.|++... . ...++|..+..+.......+...+...+++.+++++.+++.+++++.+.+.+.+|+...+.||+||+
T Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lvi 154 (479)
T 2hqm_A 75 EYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILV 154 (479)
T ss_dssp TTTBSTTSCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEE
T ss_pred hcCcccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEE
Confidence 7776541 1 3568999999888888888888888888889999999998889988888887666545799999999
Q ss_pred cCCCCCCCC-CCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHH
Q 042564 172 ATGSRAQRA-PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVAR 250 (498)
Q Consensus 172 AtG~~p~~p-~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~ 250 (498)
|||++|..| ++||.+.++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+
T Consensus 155 AtGs~p~~p~~i~g~~~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~ 234 (479)
T 2hqm_A 155 ATGGKAIFPENIPGFELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITD 234 (479)
T ss_dssp CCCEEECCCTTSTTGGGSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCcccccchHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHH
Confidence 999999999 8999887888999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCe--EEEEECCC-eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEG--VKVITDHG-EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTN 327 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~ 327 (498)
.+++.||++++++.|.++..++++ +.+.+++| +++++|.||+|+|++||+ .+.++..|++++++|+|.||++++|+
T Consensus 235 ~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~-~l~l~~~gl~~~~~G~i~vd~~~~t~ 313 (479)
T 2hqm_A 235 HYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL-GMGSENVGIKLNSHDQIIADEYQNTN 313 (479)
T ss_dssp HHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC-CSSGGGGTCCBCTTSCBCCCTTCBCS
T ss_pred HHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc-ccChhhcCceECCCCCEeECCCCccC
Confidence 999999999999999999876544 77888899 789999999999999999 44468889999999999999999999
Q ss_pred CCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCC---CCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEE
Q 042564 328 VPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQ---PCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFT 403 (498)
Q Consensus 328 ~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~ 403 (498)
.|+|||+|||++.+.+++.|.+||+++|+||++.. +...+|..+|+++|++|+++++|++|++|+.+ +..++.+..
T Consensus 314 ~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~vGl~e~~a~~~~~~~~~~~~~ 393 (479)
T 2hqm_A 314 VPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYN 393 (479)
T ss_dssp STTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEE
T ss_pred CCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEEEeCCHHHHHhcCCCCcEEEEE
Confidence 99999999999888899999999999999999865 44567788999999999999999999999887 223488888
Q ss_pred EecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHH
Q 042564 404 SSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479 (498)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 479 (498)
..+....++.....+.+|+|+++++++++|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|++.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 469 (479)
T 2hqm_A 394 SKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEELVT 469 (479)
T ss_dssp EEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred EeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHH
Confidence 8888888876566778999999999999999999999999999999999999999999999999999999998765
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-75 Score=599.79 Aligned_cols=458 Identities=35% Similarity=0.621 Sum_probs=402.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||++||..|++.|++|+||||.... .......+||+|+++||+|+|.++..+.....+.....||+.
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~-~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~ 83 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPS-PRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWE 83 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCC-TTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccc-cccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcc
Confidence 4599999999999999999999999999999941111 011135689999999999999999999988888889999987
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
......++|..+..+.......+...+...+.+.+++++.+.+.+++++.+.|.+.+|+..+++||+||||||++|..|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~ 163 (488)
T 3dgz_A 84 VAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPT 163 (488)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCS
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCC
Confidence 76557899999999999888888888888888899999999999999999999887776568999999999999999998
Q ss_pred -CCCC-CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEE
Q 042564 182 -IPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 182 -i~g~-~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 259 (498)
+||. +..+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++. .+++.+|+++.+.+.+.+++.||++
T Consensus 164 ~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~gv~~ 242 (488)
T 3dgz_A 164 QVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLRGFDQQMSSLVTEHMESHGTQF 242 (488)
T ss_dssp SCBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCcccccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC-cccccCCHHHHHHHHHHHHHCCCEE
Confidence 9997 446788999998889999999999999999999999999999999986 4678899999999999999999999
Q ss_pred EcCccEEEEEEeCC-eEEEEECC---Ce--EEEcCEEEEecCCCcCCCCCCcccCCceeC-CCCCeEcCCCCCCCCCCeE
Q 042564 260 HPRTTIKELIKSEE-GVKVITDH---GE--EIVADVVLFATGRAPNTKRLNLKAVGVEVD-QTGAVKVDENSRTNVPSIW 332 (498)
Q Consensus 260 ~~~~~v~~i~~~~~-~~~v~~~~---g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~-~~g~i~vd~~~~t~~~~iy 332 (498)
++++.+.++...++ .+.+++.+ |+ ++++|.|++|+|++|+++++.++..|++++ ++|+|.||+++||++||||
T Consensus 243 ~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t~~~~Iy 322 (488)
T 3dgz_A 243 LKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIY 322 (488)
T ss_dssp EETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBCSSTTEE
T ss_pred EeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCccCCCCEE
Confidence 99999999987443 45565543 55 478999999999999999887888999999 7899999999999999999
Q ss_pred EecccC-CCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCc
Q 042564 333 AVGDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMR 410 (498)
Q Consensus 333 a~GD~~-~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~ 410 (498)
|+|||+ +.+.+++.|.+||+++|+||++......++..+|+++|++|++++||+||+||+++ +...+.++...|.+..
T Consensus 323 A~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~ 402 (488)
T 3dgz_A 323 AIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLE 402 (488)
T ss_dssp ECGGGBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEEECCCHH
T ss_pred EeEEecCCCCcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEEECCCCeEEEeCCHHHHHhhCCCCcEEEEEccccchh
Confidence 999998 56889999999999999999987766678889999999999999999999999976 2235777776676655
Q ss_pred cccccC-CceeEEEEEEE-CCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 411 NTISGR-QEKTVMKLVVD-AETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 411 ~~~~~~-~~~~~~kl~~~-~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
++.... .+.+|+|+++| +++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|++.+++
T Consensus 403 ~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 475 (488)
T 3dgz_A 403 FTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLH 475 (488)
T ss_dssp HHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSTHHHHTCC
T ss_pred hhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHH
Confidence 543332 36799999999 589999999999999999999999999999999999999999999999998763
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-75 Score=600.85 Aligned_cols=451 Identities=44% Similarity=0.768 Sum_probs=408.8
Q ss_pred cccCC-CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhh
Q 042564 17 EEQTH-FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDA 95 (498)
Q Consensus 17 ~~~~~-~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~ 95 (498)
+..|+ .+|||+|||||++|+++|+.|++.|++|+||| +..+||+|.++||+|++.++..+.....+...
T Consensus 19 ~~~M~~~~~DVvVIGgG~aGl~aA~~la~~G~~V~liE----------k~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~ 88 (484)
T 3o0h_A 19 PGSMGSFDFDLFVIGSGSGGVRAARLAGALGKRVAIAE----------EYRIGGTCVIRGCVPKKLYFYASQYAQEFSKS 88 (484)
T ss_dssp -----CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCEEEECcCHHHHHHHHHHHhCcCEEEEEe----------CCCCCCceeccCccccHHHHHHHHHHHHHHHH
Confidence 33444 46999999999999999999999999999999 66789999999999999999999999988888
Q ss_pred hcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC
Q 042564 96 RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~ 175 (498)
..|++... ...++|..+..+.......+...+...+.+.+++++.+.+.+++++.+.+. .++. .+.||++|+|||+
T Consensus 89 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~-~~~~--~~~~d~lviAtG~ 164 (484)
T 3o0h_A 89 IGFGWKYA-DPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELS-VTGE--RISAEKILIATGA 164 (484)
T ss_dssp GGGTBCCC-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TTCC--EEEEEEEEECCCE
T ss_pred HhCCcccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEe-cCCe--EEEeCEEEEccCC
Confidence 99988754 357899999999998898888888888999999999999999999877763 2433 8999999999999
Q ss_pred CCC-CCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHh
Q 042564 176 RAQ-RAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEG 254 (498)
Q Consensus 176 ~p~-~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~ 254 (498)
.|. .|++||.+.++++++++.+...+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++.+++++.+.+.+.+++
T Consensus 165 ~p~~~p~i~G~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~ 244 (484)
T 3o0h_A 165 KIVSNSAIKGSDLCLTSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVA 244 (484)
T ss_dssp EECCC--CBTGGGSBCTTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH
T ss_pred CcccCCCCCCccccccHHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHH
Confidence 999 9999999888899999988888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEe
Q 042564 255 RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAV 334 (498)
Q Consensus 255 ~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~ 334 (498)
.||++++++.|.++..+++++.+.+.+|+++++|.||+|+|++|+..++.++..|++++++|+|.||++++|++|+|||+
T Consensus 245 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~ 324 (484)
T 3o0h_A 245 KGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAV 324 (484)
T ss_dssp HTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEEC
T ss_pred CCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEE
Confidence 99999999999999887777888999998999999999999999999877788999999999999999999999999999
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccc
Q 042564 335 GDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTIS 414 (498)
Q Consensus 335 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 414 (498)
|||++.+++++.|..||+++|+||++......++..+|+++|++|++++||+||+||+++| .++.++...|....+++.
T Consensus 325 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g-~~~~~~~~~~~~~~~~~~ 403 (484)
T 3o0h_A 325 GDVTGHIQLTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRY-KRVEIYRTVFRPMRNVLS 403 (484)
T ss_dssp GGGGTSCCCHHHHHHHHHHHHHHHHC---CCCCCTTCCEEECCSSCEEEEECCHHHHHHHC-SEEEEEEEEECCHHHHHH
T ss_pred EecCCCCcCHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEEEECCCCEEEeeCCHHHHHHcC-CCEEEEEecCCcchhhcc
Confidence 9999989999999999999999999876666788899999999999999999999999985 467888888888777776
Q ss_pred cCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 415 GRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 415 ~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
...+.+|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++++|||++|++.+++.
T Consensus 404 ~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 471 (484)
T 3o0h_A 404 GSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTMYK 471 (484)
T ss_dssp TCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGCCCS
T ss_pred CCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHhh
Confidence 67788999999999999999999999999999999999999999999999999999999999887654
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-75 Score=594.68 Aligned_cols=443 Identities=37% Similarity=0.653 Sum_probs=399.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCC
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYG 99 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g 99 (498)
+.+|||+|||||+||+++|.+|++.|++|+||| +..+||+|.+.||+|+|.++..+.....+. ....|+
T Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE----------~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g 71 (450)
T 1ges_A 2 TKHYDYIAIGGGSGGIASINRAAMYGQKCALIE----------AKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYG 71 (450)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGT
T ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCeEEEEc----------CCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhcC
Confidence 346899999999999999999999999999999 557899999999999999999988877776 667777
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+... ...++|..+..+......++...+...+.+.+++++.+++.+++++.+.+ +|+ .++||+||+|||++|..
T Consensus 72 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~---~g~--~~~~d~lviAtGs~p~~ 145 (450)
T 1ges_A 72 FDTT-INKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NGE--TITADHILIATGGRPSH 145 (450)
T ss_dssp EEEE-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE---TTE--EEEEEEEEECCCEEECC
T ss_pred ccCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE---CCE--EEEeCEEEECCCCCCCC
Confidence 7543 35789999999988888888888888888899999999988888887666 543 79999999999999999
Q ss_pred CCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEE
Q 042564 180 APIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 180 p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 259 (498)
|++||.+.++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+++.||++
T Consensus 146 p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 225 (450)
T 1ges_A 146 PDIPGVEYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQL 225 (450)
T ss_dssp CCSTTGGGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEE
T ss_pred CCCCCccceecHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEE
Confidence 99999887889999988888899999999999999999999999999999999999999899999999999999999999
Q ss_pred EcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccC
Q 042564 260 HPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~ 338 (498)
++++.|.++..++++ +.+++.+|+++++|.||+|+|++|+++.+.++.+|++++++|+|.||+++||++|+|||+|||+
T Consensus 226 ~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~ 305 (450)
T 1ges_A 226 HTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNT 305 (450)
T ss_dssp ECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGG
T ss_pred EeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccC
Confidence 999999999876544 7788889989999999999999999987666888999998999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCCCC-CCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCccccccC
Q 042564 339 NRMNLTPVALMEGTCFAKTVFGGQPCK-PDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGR 416 (498)
Q Consensus 339 ~~~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
+.+++++.|.+||+++|+||+++.... .+|..+|+++|++|+++++|++|++|+.+ |..++.++...+....++....
T Consensus 306 ~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 385 (450)
T 1ges_A 306 GAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTH 385 (450)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSS
T ss_pred CCCccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCCcEEEEEEECchhhHHHhcC
Confidence 888899999999999999999865555 67888999999999999999999999987 3236888888887777776566
Q ss_pred CceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHH
Q 042564 417 QEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479 (498)
Q Consensus 417 ~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 479 (498)
.+.+|+|+++++++++|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|++.+
T Consensus 386 ~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 448 (450)
T 1ges_A 386 RQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVT 448 (450)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred CCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHHHh
Confidence 778999999999999999999999999999999999999999999999999999999998764
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-74 Score=597.21 Aligned_cols=457 Identities=40% Similarity=0.708 Sum_probs=409.8
Q ss_pred CCccEEEECCChhHHHHHHHHHh-CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN-FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
.+|||+||||||||+++|++|++ .|++|+|||++. .+..+.+..+||+|.++||+|+|.+++.+.....+.+...||+
T Consensus 2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~-~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 80 (490)
T 1fec_A 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK-HHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGW 80 (490)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS-SSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEeccc-ccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCc
Confidence 35899999999999999999999 999999999311 1122235678999999999999999999998888888888888
Q ss_pred cccccc--ccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEEeCCEEEEEe---CCCc-eEEEEcCeEEEcC
Q 042564 101 EVHEKI--DFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQ---LDGT-KLSYSAKHILIAT 173 (498)
Q Consensus 101 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~---~~g~-~~~~~~d~liiAt 173 (498)
... .. .++|..+..+.......+...+...+++. +++++.+++.+++++.+.+.. .+|. ...+.||+|||||
T Consensus 81 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAt 159 (490)
T 1fec_A 81 ELD-RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLAT 159 (490)
T ss_dssp ECC-GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECC
T ss_pred ccC-CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeC
Confidence 643 23 68999999999999888888888888888 999999999999999888864 2441 1489999999999
Q ss_pred CCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHC---CCcEEEEeeCCCCCCCCCHHHHHHHHH
Q 042564 174 GSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGM---GSTVDLLFRKELPLRGFDDEMRAVVAR 250 (498)
Q Consensus 174 G~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~V~lv~~~~~~l~~~~~~~~~~l~~ 250 (498)
|++|..|++||.+.++++++++.+...+++++|||+|++|+|+|..|.++ |.+|+++++.+.+++.+++++.+.+.+
T Consensus 160 Gs~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~ 239 (490)
T 1fec_A 160 GSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTE 239 (490)
T ss_dssp CEEECCCCSBTGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCccceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHHHH
Confidence 99999999999887889999999888899999999999999999999999 999999999999999999999999999
Q ss_pred HHHhCCCEEEcCccEEEEEEeCC-eEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEE-GVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
.+++.||++++++.|.++..+++ .+.+++.+|+++++|.||+|+|++|+++.+.++.+|++++++|+|.||+++||++|
T Consensus 240 ~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~~ 319 (490)
T 1fec_A 240 QLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVD 319 (490)
T ss_dssp HHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSST
T ss_pred HHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCccCCC
Confidence 99999999999999999987654 37788889988999999999999999987667889999998999999999999999
Q ss_pred CeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCC
Q 042564 330 SIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM 409 (498)
Q Consensus 330 ~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~ 409 (498)
+|||+|||++.+++++.|.+||+++|+||++......+|..+|+++|++|+++++|++|++|+++ +..+.++...|.+.
T Consensus 320 ~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~-~~~~~~~~~~~~~~ 398 (490)
T 1fec_A 320 NIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKK-YDQVAVYESSFTPL 398 (490)
T ss_dssp TEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCEEECCSSCEEEEECCHHHHHHH-CSEEEEEEEEECCH
T ss_pred CEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCccEEEECCCCeEEEeCCHHHHHhc-CCCEEEEEeecChh
Confidence 99999999998889999999999999999986666678889999999999999999999999987 45678888888877
Q ss_pred ccccccCCceeEE-EEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 410 RNTISGRQEKTVM-KLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 410 ~~~~~~~~~~~~~-kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
.+++....+.+|+ |+++++++++|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.+++
T Consensus 399 ~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 471 (490)
T 1fec_A 399 MHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMR 471 (490)
T ss_dssp HHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC
T ss_pred hhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHHH
Confidence 7777666788999 99999999999999999999999999999999999999999999999999999887644
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-73 Score=588.38 Aligned_cols=440 Identities=26% Similarity=0.430 Sum_probs=397.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
+.+|||+||||||||+++|..|++.|++|+|||| ...+||+|.++||+|++.++..+.....+.....
T Consensus 2 ~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk---------~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~--- 69 (466)
T 3l8k_A 2 SLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADP---------KGELGGNCLYSGCVPSKTVREVIQTAWRLTNIAN--- 69 (466)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECT---------TSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CccceEEEECCCHHHHHHHHHHHhCCCeEEEEEC---------CCCCCCcccccCCCchHHHHHHHHHHHHHHhccc---
Confidence 3469999999999999999999999999999996 5679999999999999999999888777766554
Q ss_pred ccccccccCHHHHHHHHHHHHHHHh--HHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLN--GIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
....++|..+..+.....+ +. ..+...+++.+++++.+++.+++++.+.|...+|+..++.||+||+|||+.|+
T Consensus 70 ---~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~ 145 (466)
T 3l8k_A 70 ---VKIPLDFSTVQDRKDYVQE-LRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETA 145 (466)
T ss_dssp ---SCCCCCHHHHHHHHHHHHH-HHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEEC
T ss_pred ---CCCCcCHHHHHHHHHhhee-ccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCcc
Confidence 2356889999888887777 76 77777888889999999999999999999888776334999999999999999
Q ss_pred CCCCCCCCcccChHHHh----ccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCC-CHHHHHHHHHHHH
Q 042564 179 RAPIPGQELAITSDEAL----SLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF-DDEMRAVVARNLE 253 (498)
Q Consensus 179 ~p~i~g~~~~~~~~~~~----~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~-~~~~~~~l~~~l~ 253 (498)
.|++||.+.+++++++. .+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+ ++++.+.+.+.++
T Consensus 146 ~p~i~G~~~~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~ 225 (466)
T 3l8k_A 146 KLRLPGVEYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK 225 (466)
T ss_dssp CCCCTTGGGSBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC
T ss_pred CCCCCCccceEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE
Confidence 99999998889999988 666778999999999999999999999999999999999999987 9999999988887
Q ss_pred hCCCEEEcCccEEEEEEeC-CeEEEEEC--CCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCC
Q 042564 254 GRGINLHPRTTIKELIKSE-EGVKVITD--HGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNV 328 (498)
Q Consensus 254 ~~Gv~i~~~~~v~~i~~~~-~~~~v~~~--~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~ 328 (498)
|++++++.|.++..++ +++.+.+. +|+ ++++|.|++|+|++|+++ +.+++.|++++++| |.||+++||++
T Consensus 226 ---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~~~G-i~vd~~~~t~~ 300 (466)
T 3l8k_A 226 ---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP-EGAREIGLSISKTG-IVVDETMKTNI 300 (466)
T ss_dssp ---CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCC-TTTGGGTCCBCSSS-BCCCTTCBCSS
T ss_pred ---EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccc-cchhhcCceeCCCC-EeECCCccCCC
Confidence 9999999999998876 67778887 666 799999999999999999 66788999999999 99999999999
Q ss_pred CCeEEecccCCCCCChHHHHHHHHHHHHHHhCC--CCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEec
Q 042564 329 PSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGG--QPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSF 406 (498)
Q Consensus 329 ~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~--~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~ 406 (498)
|+|||+|||++.+++++.|.+||+++|+||++. .....++..+|+++|++|+++++|+||+||+++|+ ++.+....+
T Consensus 301 ~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~-~~~~~~~~~ 379 (466)
T 3l8k_A 301 PNVFATGDANGLAPYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKMGI-EIVEAEYNM 379 (466)
T ss_dssp TTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCEEECSSSCEEEEECCHHHHHHHTC-CEEEEEEEG
T ss_pred CCEEEEEecCCCCccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcEEEECCCCeEEecCCHHHHHhCCC-CEEEEEEEc
Confidence 999999999999999999999999999999986 55566888999999999999999999999999865 788888888
Q ss_pred CCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 407 NPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
....+++..+.+.+|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.+++.
T Consensus 380 ~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 455 (466)
T 3l8k_A 380 EEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEIISYTAR 455 (466)
T ss_dssp GGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHHHHHHH
T ss_pred ccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHHHHHHH
Confidence 8777776666788999999999999999999999999999999999999999999999999999999999887544
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-73 Score=587.46 Aligned_cols=445 Identities=40% Similarity=0.692 Sum_probs=401.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|+++|||+|||||+||+++|.+|++.|++|+||| +..+||+|.+.||+|+|.++..+.+...+.+...|+
T Consensus 1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE----------~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g 70 (463)
T 2r9z_A 1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIE----------SKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFG 70 (463)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred CCccCcEEEECCCHHHHHHHHHHHhCCCcEEEEc----------CCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcC
Confidence 3456999999999999999999999999999999 457899999999999999999988888887777787
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+... ...++|..+..+....+..+...+...+.+.+++++.+++.+++++.+.+ +|. .++||+||+|||++|..
T Consensus 71 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~---~g~--~~~~d~lviAtGs~p~~ 144 (463)
T 2r9z_A 71 VQAS-GGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV---EGQ--RLSADHIVIATGGRPIV 144 (463)
T ss_dssp BCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE---TTE--EEEEEEEEECCCEEECC
T ss_pred cccC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE---CCE--EEEcCEEEECCCCCCCC
Confidence 7643 35789999999998888888888888888899999999988888887666 553 79999999999999999
Q ss_pred CCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEE
Q 042564 180 APIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 180 p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 259 (498)
|++||.+.++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+++.||++
T Consensus 145 p~i~G~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i 224 (463)
T 2r9z_A 145 PRLPGAELGITSDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIET 224 (463)
T ss_dssp CSCTTGGGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCccceecHHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 99999877889999988888899999999999999999999999999999999999898899999999999999999999
Q ss_pred EcCccEEEEEEeCCeEEEEECCCe-EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccC
Q 042564 260 HPRTTIKELIKSEEGVKVITDHGE-EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~ 338 (498)
++++.|.++..++++..+++.+|+ ++++|.||+|+|++|+++.+.++++|++++++|+|.||++++|++|||||+|||+
T Consensus 225 ~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~ 304 (463)
T 2r9z_A 225 HLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDIT 304 (463)
T ss_dssp ESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGG
T ss_pred EeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeecC
Confidence 999999999887767888889998 8999999999999999987656788999998999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCCCC-CCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCccccccC
Q 042564 339 NRMNLTPVALMEGTCFAKTVFGGQPCK-PDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGR 416 (498)
Q Consensus 339 ~~~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
+.+.+++.|.+||+++|.||++..... .+|..+|+++|++|+++++|++|++|+.+ | .++.++...+....+++...
T Consensus 305 ~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~g-~~~~~~~~~~~~~~~~~~~~ 383 (463)
T 2r9z_A 305 GRDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLG-DVLTVYETSFTPMRYALNEH 383 (463)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHC-SCEEEEEEEECCGGGTTSSS
T ss_pred CCcccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEEEeCCCCeEEEcCCHHHHHhcCC-CCEEEEEEEcccchhhhhcC
Confidence 888899999999999999999865554 67889999999999999999999999986 3 36888888888888877666
Q ss_pred CceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 417 QEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 417 ~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
.+.+|+|+++++++++|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|++.++.
T Consensus 384 ~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 448 (463)
T 2r9z_A 384 GPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELVTLK 448 (463)
T ss_dssp CCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGCCC
T ss_pred CCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999987643
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-73 Score=589.70 Aligned_cols=455 Identities=27% Similarity=0.444 Sum_probs=403.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhh-hhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELED-ARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~g~ 100 (498)
.+|||+|||||+||++||++|++.|++|+|||+.... .....+||+|.+.||+|++.++..+........ +..+++
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~---gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~ 78 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK---EGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGI 78 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT---TSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCcc---CCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4699999999999999999999999999999942100 011248999999999999999998877766654 467777
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
... ...++|..+..+.....+.+...+...+++.+++++.+++.+++++.+.|...+|....+.||+||+|||++|..|
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~ 157 (476)
T 3lad_A 79 STG-EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI 157 (476)
T ss_dssp ECS-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred ccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCC
Confidence 653 4678999999999988888888888888888999999999999999999988777556899999999999999877
Q ss_pred CCCCC--CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 181 PIPGQ--ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 181 ~i~g~--~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
+.++. ..++++++...+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.+++.||+
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 237 (476)
T 3lad_A 158 PPAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLK 237 (476)
T ss_dssp TTSCCCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCcccEEechhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCE
Confidence 65553 3477888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccEEEEEEeCCeEEEEECCC---eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEec
Q 042564 259 LHPRTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVG 335 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~G 335 (498)
+++++.|.++..+++.+.+.+.++ +++++|.||+|+|++|+.+.+.++..|++++++|+|.||+++||++|||||+|
T Consensus 238 v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~G 317 (476)
T 3lad_A 238 ILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIG 317 (476)
T ss_dssp EEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECG
T ss_pred EEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCCCCEEEEE
Confidence 999999999988777777777654 57999999999999999998768889999999999999999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccccc
Q 042564 336 DVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISG 415 (498)
Q Consensus 336 D~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~ 415 (498)
||++.+.+++.|..||+++|+||++.. ...++..+|+++|++|++++||+||+||+++|+ ++.+....+....++...
T Consensus 318 D~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~ 395 (476)
T 3lad_A 318 DVVRGAMLAHKASEEGVVVAERIAGHK-AQMNYDLIPAVIYTHPEIAGVGKTEQALKAEGV-AINVGVFPFAASGRAMAA 395 (476)
T ss_dssp GGSSSCCCHHHHHHHHHHHHHHHHHCC-CCCCTTCCCEEECSSSEEEEEECCHHHHHHTTC-CEEEEEEEGGGCHHHHHH
T ss_pred ccCCCcccHHHHHHHHHHHHHHhcCCC-cccCCCCCCEEEECcCCEEEeeCCHHHHHhcCC-CEEEEEEeccccchheec
Confidence 999889999999999999999999754 446788899999999999999999999999865 677877777777777666
Q ss_pred CCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 416 RQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 416 ~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
..+.+|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++..
T Consensus 396 ~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 462 (476)
T 3lad_A 396 NDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAAL 462 (476)
T ss_dssp TCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHH
T ss_pred CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999999999999999999888654
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-74 Score=592.15 Aligned_cols=452 Identities=25% Similarity=0.332 Sum_probs=399.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+||||||||++||.+|++.|++|+||| +..+||+|+++||+|+|.++..++.......+..||+..
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE----------~~~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 77 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIE----------GGAYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQV 77 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEE----------SSCSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEe----------CCCCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCC
Confidence 5899999999999999999999999999999 556999999999999999999999888888888888863
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
. ...++|..+..+.....+++...+...+... +++++.+++.+.+++.+.+ .++ ..++||+||||||++|..|+
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~--~~~--~~~~~d~lViATGs~p~~p~ 152 (492)
T 3ic9_A 78 D-RISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQV--DDH--SQVIAKRIVIATGSRPNYPE 152 (492)
T ss_dssp S-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEE--TTT--EEEEEEEEEECCCEECCCCH
T ss_pred C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEE--cCC--cEEEeCEEEEccCCCCcCCC
Confidence 2 4568999988888777776665554444443 6789999999999887766 344 38999999999999999988
Q ss_pred CCCC--CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEE
Q 042564 182 IPGQ--ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 182 i~g~--~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 259 (498)
+++. ..++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.+++. |++
T Consensus 153 ~~~~~~~~v~t~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i 231 (492)
T 3ic9_A 153 FLAAAGSRLLTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYF 231 (492)
T ss_dssp HHHTTGGGEECHHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEE
T ss_pred CCCccCCcEEcHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEE
Confidence 6553 3578999999988899999999999999999999999999999999999999989999999999999988 999
Q ss_pred EcCccEEEEEEeCCeEEEEEC--CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcC-CCCCCCCCCeEEe
Q 042564 260 HPRTTIKELIKSEEGVKVITD--HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD-ENSRTNVPSIWAV 334 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~~~v~~~--~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd-~~~~t~~~~iya~ 334 (498)
++++.|.++..+++++.+.+. +| +++++|.||+|+|++|++++++++.+|++++++|+|.|| ++++|++|+|||+
T Consensus 232 ~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~ 311 (492)
T 3ic9_A 232 DAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVA 311 (492)
T ss_dssp ETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEEC
T ss_pred EECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEE
Confidence 999999999887777777764 67 679999999999999999998889999999999999999 8999999999999
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHhC-CCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCC----CCEEEEEEecCCC
Q 042564 335 GDVTNRMNLTPVALMEGTCFAKTVFG-GQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGK----GDILVFTSSFNPM 409 (498)
Q Consensus 335 GD~~~~~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~----~~~~~~~~~~~~~ 409 (498)
|||++.+++++.|.+||+++|+||++ ......++..+|+++|++|+++++|+||+||++++. .++.+....|...
T Consensus 312 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~ 391 (492)
T 3ic9_A 312 GDANNTLTLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQ 391 (492)
T ss_dssp GGGGTSSCSHHHHHHHHHHHHHHHHHTTSCCEECCCCCEEEECSSSEEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGC
T ss_pred EecCCCCccHHHHHHHHHHHHHHHcCCCCCcccCCCCCcEEEECCCCeEEecCCHHHHHhccCccCCccEEEEEEEeccc
Confidence 99999999999999999999999997 333445678899999999999999999999998831 2688888888888
Q ss_pred ccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH-HHHHHHh
Q 042564 410 RNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR-SVTRRVA 488 (498)
Q Consensus 410 ~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~-~~~~~~~ 488 (498)
.++...+.+.+|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++. .+.+++.
T Consensus 392 ~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~~~~ 471 (492)
T 3ic9_A 392 GRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEEGLRTALRDAQQKLA 471 (492)
T ss_dssp HHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSCCCTTCTHHHHHHHHHHHHHTSS
T ss_pred hhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCChHHHHHHHHHHHHHHhh
Confidence 877666778899999999999999999999999999999999999999999999999999999999999854 4555554
Q ss_pred cc
Q 042564 489 AA 490 (498)
Q Consensus 489 ~~ 490 (498)
.+
T Consensus 472 ~~ 473 (492)
T 3ic9_A 472 IE 473 (492)
T ss_dssp SC
T ss_pred cc
Confidence 43
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-72 Score=581.52 Aligned_cols=449 Identities=27% Similarity=0.459 Sum_probs=399.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhh-hhcCCcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELED-ARSYGWE 101 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~g~~ 101 (498)
+|||+|||||+||++||.+|++.|++|+|||+ ...+||+|.+.||+|+|.++..+...+.+.. ...+|+.
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~---------~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~ 72 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEK---------RGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLM 72 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeC---------CCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 58999999999999999999999999999994 3378999999999999999988877766654 6667766
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
......++|..+..+.....+.+...+...+++.+++++.+++.+++++.+.|.+.+|+...++||+||+|||++|..|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~ 152 (468)
T 2qae_A 73 GGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELP 152 (468)
T ss_dssp CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBT
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCC
Confidence 42345678999998888888888777778888889999999988899999999887764458999999999999999998
Q ss_pred CCCCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHH-HhCCCE
Q 042564 182 IPGQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNL-EGRGIN 258 (498)
Q Consensus 182 i~g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l-~~~Gv~ 258 (498)
++|.+ .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+ ++.||+
T Consensus 153 ~~g~~~~~v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~ 232 (468)
T 2qae_A 153 FLPFDEKVVLSSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMK 232 (468)
T ss_dssp TBCCCSSSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCE
T ss_pred CCCCCcCceechHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcE
Confidence 88875 378999999888889999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEcCccEEEEEEeCCeEEEEEC--CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEe
Q 042564 259 LHPRTTIKELIKSEEGVKVITD--HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAV 334 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~~~v~~~--~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~ 334 (498)
+++++.|.++..+++++.+.+. +| +++++|.||+|+|++||++++.+++.|++++++|+|.||+++||++|+|||+
T Consensus 233 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~ 312 (468)
T 2qae_A 233 FMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAI 312 (468)
T ss_dssp EECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEEC
T ss_pred EEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCCCEEEe
Confidence 9999999999877666666665 66 5799999999999999999876788899999889999999999999999999
Q ss_pred cccCC-CCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccc
Q 042564 335 GDVTN-RMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTI 413 (498)
Q Consensus 335 GD~~~-~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
|||++ .+++++.|.+||+++|+||++.. ...++..+|+++|++|+++++|++|++|++.|+ ++.+...++....++.
T Consensus 313 GD~~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~-~~~~~~~~~~~~~~~~ 390 (468)
T 2qae_A 313 GDVVDKGPMLAHKAEDEGVACAEILAGKP-GHVNYGVIPAVIYTMPEVASVGKSEDELKKEGV-AYKVGKFPFNANSRAK 390 (468)
T ss_dssp GGGBSSSCSCHHHHHHHHHHHHHHHTTCC-CCCCTTSCCEEECSSSEEEEEECCHHHHHHTTC-CEEEEEEEGGGCHHHH
T ss_pred eccCCCCCccHhHHHHHHHHHHHHHcCCC-ccCCCCCCCEEEECCCceEEEeCCHHHHHhcCC-CEEEEEEecccchhhh
Confidence 99999 88999999999999999999753 445677899999999999999999999999854 7888888887777766
Q ss_pred ccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 414 SGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 414 ~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
....+.+|+|+++|+++++|+|++++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 391 ~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 459 (468)
T 2qae_A 391 AVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACM 459 (468)
T ss_dssp HTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTHHHHHHHHH
T ss_pred hcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHH
Confidence 566778999999999899999999999999999999999999999999999999999999999987653
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-73 Score=585.69 Aligned_cols=452 Identities=30% Similarity=0.469 Sum_probs=401.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|+.+|||+|||||+||+++|+.|++.|++|+|||+ ...+||+|.+.||+|++.++..+.....+.....+|
T Consensus 3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~---------~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~g 73 (482)
T 1ojt_A 3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVER---------YKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANG 73 (482)
T ss_dssp SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeC---------CCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCC
Confidence 44468999999999999999999999999999994 367899999999999999998888877777777777
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCC----------ceEEEEcCeE
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDG----------TKLSYSAKHI 169 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g----------~~~~~~~d~l 169 (498)
+... ...++|..+..+.......+...+...+.+.+++++.+++.+++++.+.+...+| +..+++||+|
T Consensus 74 i~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~l 152 (482)
T 1ojt_A 74 IKYP-EPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNC 152 (482)
T ss_dssp CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred cccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEE
Confidence 7653 3568899998888887777777777788888999999998888888888865443 1247999999
Q ss_pred EEcCCCCCCCCC-CCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHH
Q 042564 170 LIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVV 248 (498)
Q Consensus 170 iiAtG~~p~~p~-i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l 248 (498)
|+|||+.|..|+ ++....++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+
T Consensus 153 ViAtGs~p~~~~~i~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l 232 (482)
T 1ojt_A 153 IIAAGSRVTKLPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVW 232 (482)
T ss_dssp EECCCEEECCCSSCCCCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHH
T ss_pred EECCCCCCCCCCCCCccCcEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHH
Confidence 999999998887 6633357889999888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEcCccEEEEEEeCCeEEEEECC----CeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCC
Q 042564 249 ARNLEGRGINLHPRTTIKELIKSEEGVKVITDH----GEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS 324 (498)
Q Consensus 249 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~----g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~ 324 (498)
.+.+++.||++++++.|.++..+++...+++.+ |+++++|.||+|+|++||++++.++++|++++++|+|.||+++
T Consensus 233 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~ 312 (482)
T 1ojt_A 233 QKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQM 312 (482)
T ss_dssp HHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTS
T ss_pred HHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCc
Confidence 999999999999999999998877777777766 7789999999999999999987678899999988999999999
Q ss_pred CCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEE
Q 042564 325 RTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTS 404 (498)
Q Consensus 325 ~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~ 404 (498)
||+.|+|||+|||++.+++++.|.+||+++|+||++.. ...++..+|+++|++|++++||+||+||++.|+ ++.+...
T Consensus 313 ~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~-~~~~~~~ 390 (482)
T 1ojt_A 313 RTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHK-AYFDARVIPGVAYTSPEVAWVGETELSAKASAR-KITKANF 390 (482)
T ss_dssp BCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC-CCCCCCCCCEEECSSSCEEEEECCHHHHHHHTC-CEEEEEE
T ss_pred ccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCCC-ccCCCCCCCEEEEcCCCeEEEeCCHHHHHhcCC-CEEEEEE
Confidence 99999999999999988999999999999999999843 445678899999999999999999999999865 6888888
Q ss_pred ecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHH
Q 042564 405 SFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSV 483 (498)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~ 483 (498)
.+....++.....+.+|+|+++|+++++|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++...
T Consensus 391 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~~ 469 (482)
T 1ojt_A 391 PWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEV 469 (482)
T ss_dssp EGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHH
T ss_pred EcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHH
Confidence 8777777665567789999999999999999999999999999999999999999999999999999999998886543
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-73 Score=585.96 Aligned_cols=445 Identities=37% Similarity=0.613 Sum_probs=386.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+|||||+||+++|.+|++.|++|+||| +..+||+|.+.||+|++.++..+.+...+.+...|++..
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE----------~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~ 71 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVE----------KSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDT 71 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCC
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEe----------CCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCcc
Confidence 4899999999999999999999999999999 456899999999999999999988888888888888765
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeC---------CCceEEEEcCeEEEcC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQL---------DGTKLSYSAKHILIAT 173 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~---------~g~~~~~~~d~liiAt 173 (498)
. ..++|..+..+....+..+...+...+++.+++++.+++..++++.+.+... ++....++||+||+||
T Consensus 72 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAt 149 (500)
T 1onf_A 72 K--FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAV 149 (500)
T ss_dssp C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECC
T ss_pred C--CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECC
Confidence 4 5789999998888888888888888888899999999877777766666430 0112378999999999
Q ss_pred CCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 042564 174 GSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLE 253 (498)
Q Consensus 174 G~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~ 253 (498)
|++|..|++||.+.++++++++.+.. +++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.++
T Consensus 150 Gs~p~~p~i~G~~~~~~~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~ 228 (500)
T 1onf_A 150 GNKPVFPPVKGIENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMK 228 (500)
T ss_dssp CCCBCCCSCTTGGGCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCcccCHHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHHH
Confidence 99999999999877888888888877 99999999999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEcCccEEEEEEeCCe-EEEEECCCeE-EEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCe
Q 042564 254 GRGINLHPRTTIKELIKSEEG-VKVITDHGEE-IVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSI 331 (498)
Q Consensus 254 ~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~-i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~i 331 (498)
+.||++++++.|.++..++++ +.+.+.+|++ +++|.||+|+|++|+++.+.++++|+++ ++|+|.||+++||++|+|
T Consensus 229 ~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~t~~~~i 307 (500)
T 1onf_A 229 KNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQRTSVNNI 307 (500)
T ss_dssp HTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTCBCSSSSE
T ss_pred hCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCcccCCCCE
Confidence 999999999999999876543 7788889987 9999999999999999866568889998 789999999999999999
Q ss_pred EEecccC----------------------------------CCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEec
Q 042564 332 WAVGDVT----------------------------------NRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFC 377 (498)
Q Consensus 332 ya~GD~~----------------------------------~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~ 377 (498)
||+|||+ +.+++++.|.+||+++|+||+++.....+|..+|+++|+
T Consensus 308 ya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~ 387 (500)
T 1onf_A 308 YAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFS 387 (500)
T ss_dssp EECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCCEEECC
T ss_pred EEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCCeEEEc
Confidence 9999999 457789999999999999999866556678889999999
Q ss_pred cCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCcccc----ccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHH
Q 042564 378 IPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTI----SGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAV 452 (498)
Q Consensus 378 ~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~ 452 (498)
+|+++++|++|++|+.+ |..++.++...+....++. ....+.+|+|+++|+++++|+|+|++|+++.|+|+.+++
T Consensus 388 ~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ 467 (500)
T 1onf_A 388 HPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAV 467 (500)
T ss_dssp SSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHH
T ss_pred CcceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHH
Confidence 99999999999999987 2136788887887777664 445678999999999999999999999999999999999
Q ss_pred HHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 453 ALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 453 ~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
+|++++|++||.+++++|||++|++.++.
T Consensus 468 ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 496 (500)
T 1onf_A 468 ALKMNATKKDFDETIPIHPTAAEEFLTLQ 496 (500)
T ss_dssp HHHTTCBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred HHHcCCCHHHHhccccCCCCHHHHHHHhc
Confidence 99999999999999999999999987643
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-72 Score=577.39 Aligned_cols=440 Identities=36% Similarity=0.545 Sum_probs=394.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+|||||+||+++|..|++.|++|+||| +..+||+|.+.||+|+|.++..+.....+.....||+.
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie----------~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~- 74 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVE----------AGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLK- 74 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEE-
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEe----------CCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCC-
Confidence 5899999999999999999999999999999 44589999999999999999988877777777778876
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC-
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP- 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~- 181 (498)
....++|..++.+.....+.+...+...+++.+++++.+++.+++++.+.+. |+ +++||+||+|||++|+.|+
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~---g~--~~~~d~lViATGs~p~~p~g 148 (464)
T 2eq6_A 75 -AKPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVG---GE--RYGAKSLILATGSEPLELKG 148 (464)
T ss_dssp -CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET---TE--EEEEEEEEECCCEEECCBTT
T ss_pred -CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEc---cE--EEEeCEEEEcCCCCCCCCCC
Confidence 3467899999988888888777777777888899999999888888877662 43 7999999999999999886
Q ss_pred CCCCCcccChHHHhcccc-CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 182 IPGQELAITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 182 i~g~~~~~~~~~~~~l~~-~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
+++...++++++++.+.. .+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+++.||+++
T Consensus 149 i~~~~~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~ 228 (464)
T 2eq6_A 149 FPFGEDVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVR 228 (464)
T ss_dssp BCCSSSEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCcEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEE
Confidence 777445789999988877 8999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCccEEEEEEeCCeEEEEEC-C--Ce--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEec
Q 042564 261 PRTTIKELIKSEEGVKVITD-H--GE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVG 335 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~~-~--g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~G 335 (498)
+++.|.++..+++.+.+++. + |+ ++++|.|++|+|++|+.+++.++..|++++++|+|.||+++||+.|+|||+|
T Consensus 229 ~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~G 308 (464)
T 2eq6_A 229 TKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIG 308 (464)
T ss_dssp CSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECG
T ss_pred cCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEEe
Confidence 99999999887777777765 6 76 8999999999999999998767888999988899999999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccccc
Q 042564 336 DVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISG 415 (498)
Q Consensus 336 D~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~ 415 (498)
||++.+++++.|.+||+++|+||++.. ...++. +|+++|++|+++++|++|++|+..|+ ++.+....+....++...
T Consensus 309 D~~~~~~l~~~A~~~g~~aa~~i~g~~-~~~~~~-~p~~~~~~~~~a~vG~~e~~a~~~g~-~~~~~~~~~~~~~~~~~~ 385 (464)
T 2eq6_A 309 DAARPPLLAHKAMREGLIAAENAAGKD-SAFDYQ-VPSVVYTSPEWAGVGLTEEEAKRAGY-KVKVGKFPLAASGRALTL 385 (464)
T ss_dssp GGTCSSCCHHHHHHHHHHHHHHHTTCC-CCCCCC-CCEEECSSSEEEEEECCHHHHHHTTC-CEEEEEEEGGGCHHHHHT
T ss_pred ccCCCcccHHHHHHHHHHHHHHhcCCC-cccCCC-CCeEEECCCCEEEEeCCHHHHHhcCC-CEEEEEEEcCcchhhhhc
Confidence 999988999999999999999999743 345677 99999999999999999999999865 678888878777776555
Q ss_pred CCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 416 RQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 416 ~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
..+.+|+|+++|+++++|+|++++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 386 ~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 452 (464)
T 2eq6_A 386 GGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEAAE 452 (464)
T ss_dssp SCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHHHHHHHH
T ss_pred CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHH
Confidence 6678999999999899999999999999999999999999999999999999999999999988654
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-72 Score=578.04 Aligned_cols=449 Identities=32% Similarity=0.483 Sum_probs=399.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh--hhhcCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE--DARSYG 99 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~--~~~~~g 99 (498)
.+|||+||||||||+++|..|++.|++|+|||+ ...+||+|.+.||+|+|.++..+.....+. ....+|
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~---------~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g 75 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEK---------NETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRG 75 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEEC---------SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeC---------CCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCc
Confidence 358999999999999999999999999999994 336899999999999999998887776666 666777
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+... ...++|..+..+.....+.+...+...+++.+++++.+++.+++++.+.|.+.+|...+++||+||+|||++|..
T Consensus 76 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~ 154 (474)
T 1zmd_A 76 IEMS-EVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTP 154 (474)
T ss_dssp EEES-CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred cccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCC
Confidence 7632 356789999988888887777777788888999999999888999999998766323579999999999999999
Q ss_pred CCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-CCCHHHHHHHHHHHHhCC
Q 042564 180 APIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR-GFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 180 p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~-~~~~~~~~~l~~~l~~~G 256 (498)
|+++|.+. ++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++ .+++++.+.+.+.+++.|
T Consensus 155 p~i~g~~~~~v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~G 234 (474)
T 1zmd_A 155 FPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG 234 (474)
T ss_dssp CTTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCcEEcHHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCC
Confidence 99998753 789999988888899999999999999999999999999999999999999 799999999999999999
Q ss_pred CEEEcCccEEEEEEeCCe-EEEEE-----CCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCC
Q 042564 257 INLHPRTTIKELIKSEEG-VKVIT-----DHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPS 330 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~-~~v~~-----~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~ 330 (498)
|++++++.|.++..++++ +.+.+ .+++++++|.||+|+|++|+++++.++++|++++++|+|.||+++||+.|+
T Consensus 235 v~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~ 314 (474)
T 1zmd_A 235 FKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPN 314 (474)
T ss_dssp CEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSSTT
T ss_pred CEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCCCC
Confidence 999999999999877655 66664 466789999999999999999987678889999988999999999999999
Q ss_pred eEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCc
Q 042564 331 IWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMR 410 (498)
Q Consensus 331 iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~ 410 (498)
|||+|||++.+++++.|.+||+++|+||++.. ...+|..+|+++|++|+++++|++|++|+..|+ ++.+...++....
T Consensus 315 IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~-~~~~~~~~~~~~~ 392 (474)
T 1zmd_A 315 IYAIGDVVAGPMLAHKAEDEGIICVEGMAGGA-VHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGI-EYKVGKFPFAANS 392 (474)
T ss_dssp EEECGGGSSSCCCHHHHHHHHHHHHHHHTTCC-CCCCGGGCCEEECSSSEEEEEECCHHHHHHHTC-CEEEEEEEGGGCH
T ss_pred EEEeeecCCCCccHHHHHHHHHHHHHHhcCCC-CcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCC-CEEEEEEecccch
Confidence 99999999988999999999999999999753 445678899999999999999999999998865 7888888887777
Q ss_pred cccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 411 NTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 411 ~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
++.....+.+|+|+++++++++|+|++++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 393 ~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 464 (474)
T 1zmd_A 393 RAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANL 464 (474)
T ss_dssp HHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTCTHHHHHHHHH
T ss_pred hhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHH
Confidence 765556678999999999899999999999999999999999999999999999999999999999987654
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-72 Score=572.95 Aligned_cols=445 Identities=31% Similarity=0.531 Sum_probs=397.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+|||||+||+++|.+|++.|++|+||| +..+||+|.+.+|+|+|.++..+.....+.....+|+..
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie----------~~~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~ 72 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVE----------KGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKA 72 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEE----------CCCCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence 4899999999999999999999999999999 447899999999999999998888777777777777764
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
. ...++|..++.+.....+.+...+...+++.+++++.+++.+++++.+.|.+.+|. .+++||+||+|||++|..|++
T Consensus 73 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~-~~i~~d~lViATGs~p~~~~~ 150 (455)
T 1ebd_A 73 E-NVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSA-QTYTFKNAIIATGSRPIELPN 150 (455)
T ss_dssp C-SCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEE-EEEECSEEEECCCEEECCBTT
T ss_pred C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCc-EEEEeCEEEEecCCCCCCCCC
Confidence 3 35678999888887777777777888888889999999988899999999876652 479999999999999999988
Q ss_pred CCCCc-ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEc
Q 042564 183 PGQEL-AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 183 ~g~~~-~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
+|.+. ++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+++.||++++
T Consensus 151 ~g~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~ 230 (455)
T 1ebd_A 151 FKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVT 230 (455)
T ss_dssp BCCCSSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCccceEecHHHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEe
Confidence 88643 77888888888889999999999999999999999999999999999999989999999999999999999999
Q ss_pred CccEEEEEEeCCeEEEEEC---CCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccC
Q 042564 262 RTTIKELIKSEEGVKVITD---HGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338 (498)
Q Consensus 262 ~~~v~~i~~~~~~~~v~~~---~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~ 338 (498)
++.|.++..+++++.+.+. +++++++|.||+|+|++|+.+++.+++.|++++++|+|.||+++||++|+|||+|||+
T Consensus 231 ~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~ 310 (455)
T 1ebd_A 231 NALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIV 310 (455)
T ss_dssp SEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGS
T ss_pred CCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEEeccC
Confidence 9999999887766666654 4567999999999999999998767888999998899999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCc
Q 042564 339 NRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQE 418 (498)
Q Consensus 339 ~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
+.+++++.|.+||+++|+||++. ....++..+|+++|++|+++++|++|++|+..|+ ++.+....+....++.....+
T Consensus 311 ~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~ 388 (455)
T 1ebd_A 311 PGPALAHKASYEGKVAAEAIAGH-PSAVDYVAIPAVVFSDPECASVGYFEQQAKDEGI-DVIAAKFPFAANGRALALNDT 388 (455)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTSC-CCCCCCSCCCEEECSSSCEEEEECCHHHHHTTTC-CEEEEEEEGGGCHHHHHHTCC
T ss_pred CCcccHHHHHHHHHHHHHHHcCC-CccCCCCCCCEEEECCCceEEEeCCHHHHHhcCC-CEEEEEEEcCcchHHhhcCCC
Confidence 98899999999999999999975 3445678899999999999999999999998754 788888877777776555667
Q ss_pred eeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 419 KTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 419 ~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
.+|+|+++++++++|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++.
T Consensus 389 ~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 451 (455)
T 1ebd_A 389 DGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAA 451 (455)
T ss_dssp CCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHH
T ss_pred cEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999988764
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-72 Score=582.02 Aligned_cols=449 Identities=22% Similarity=0.372 Sum_probs=400.4
Q ss_pred CccEEEECCChhHHHHHHHHHhC---CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF---GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~---g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
+|||+|||||+||+++|++|++. |.+|+||| +..+||+|.+.||+|+|.++..+.....+..+..+|
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE----------~~~~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g 71 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVID----------CDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLG 71 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEE----------SSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEe----------CCCcCCcccCcCccchHHHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999998 99999999 444899999999999999999888877777777777
Q ss_pred ccc-ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeC------CEEEEEeCCCceEEEEcCeEEEc
Q 042564 100 WEV-HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGP------NEVEVTQLDGTKLSYSAKHILIA 172 (498)
Q Consensus 100 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~------~~~~v~~~~g~~~~~~~d~liiA 172 (498)
+.. .....++|..+..+.......+...+...+++.+++++.+++.++++ +.+.|...+|+...+.||+||+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviA 151 (499)
T 1xdi_A 72 FHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVA 151 (499)
T ss_dssp BC------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEEC
T ss_pred CccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEc
Confidence 652 23456789999988888888888888888888999999999888888 67778776664347999999999
Q ss_pred CCCCCCCCCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHH
Q 042564 173 TGSRAQRAPIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVAR 250 (498)
Q Consensus 173 tG~~p~~p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~ 250 (498)
||+.|..|+++|.+. +++++++..+...+++++|||+|++|+|+|..+.++|.+|+++++.+.+++.+++++.+.+.+
T Consensus 152 TGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~ 231 (499)
T 1xdi_A 152 TGASPRILPSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEE 231 (499)
T ss_dssp CCEEECCCGGGCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHH
Confidence 999999998888753 678888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPS 330 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~ 330 (498)
.+++.||++++++.|.++..+++++.+.+.+|+++++|.||+|+|++|+++++.++++|++++++|+|.||+++||++|+
T Consensus 232 ~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t~~~~ 311 (499)
T 1xdi_A 232 SFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATG 311 (499)
T ss_dssp HHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTT
T ss_pred HHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcccCCCC
Confidence 99999999999999999987766677888888899999999999999999987778899999988999999999999999
Q ss_pred eEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCc
Q 042564 331 IWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMR 410 (498)
Q Consensus 331 iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~ 410 (498)
|||+|||++.+++++.|.+||+++|+||++......++..+|+++|++|+++++|++|++|+.+|+ ++.+....+....
T Consensus 312 IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~-~~~~~~~~~~~~~ 390 (499)
T 1xdi_A 312 IYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAGSV-AARTIMLPLRTNA 390 (499)
T ss_dssp EEECSGGGTSCSCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEECSSSEEEEEESCHHHHHHTSS-CEEEEEEESTTSH
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEEEecCCceEeCCCHHHHHhCCC-CEEEEEEecCccc
Confidence 999999999888999999999999999998644455678899999999999999999999999865 7888888887777
Q ss_pred cccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 411 NTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 411 ~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
++.....+.+|+|+++++++++|+|++++|+.+.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 391 ~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 462 (499)
T 1xdi_A 391 RAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAAR 462 (499)
T ss_dssp HHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHH
T ss_pred ceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHH
Confidence 766566678999999998899999999999999999999999999999999999999999999999887644
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-72 Score=575.63 Aligned_cols=447 Identities=28% Similarity=0.432 Sum_probs=395.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCCcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYGWE 101 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g~~ 101 (498)
+|||+||||||||+++|..|++.|.+|+||| +..+||+|.+.||+|++.++......+.+. ....+++.
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE----------~~~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~ 72 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVE----------PKYWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS 72 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEE
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEe----------CCCCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4899999999999999999999999999999 446899999999999999988877666654 55566665
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
....++|..+..+.......+...+...+++.+++++.+++..++++.+.|.+.+|+...++||+||+|||++|+.|+
T Consensus 73 --~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~ 150 (464)
T 2a8x_A 73 --GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVP 150 (464)
T ss_dssp --ECCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCT
T ss_pred --CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCC
Confidence 235678988888777777777777777888889999999988888888999877763358999999999999999998
Q ss_pred CCCCCc-ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 182 IPGQEL-AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 182 i~g~~~-~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
++|.+. ++++++.+.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.+++.||+++
T Consensus 151 ~~g~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~ 230 (464)
T 2a8x_A 151 GTSLSANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTIL 230 (464)
T ss_dssp TCCCBTTEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCCceEEecHHHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEE
Confidence 888643 7888898888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEEEeCCeEEEEEC-CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEeccc
Q 042564 261 PRTTIKELIKSEEGVKVITD-HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~~-~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
+++.|.++..+++.+.+.+. +| +++++|.|++|+|++||+++++++++|++++++|+|.||+++||++|+|||+|||
T Consensus 231 ~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~ 310 (464)
T 2a8x_A 231 TATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDV 310 (464)
T ss_dssp CSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEECGGG
T ss_pred eCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEeECc
Confidence 99999999877666666664 56 6799999999999999999877788899999889999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCC-CCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccC
Q 042564 338 TNRMNLTPVALMEGTCFAKTVFGGQPCK-PDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGR 416 (498)
Q Consensus 338 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
++.+++++.|.+||+++|+||++..... .+|..+|+++|++|+++++|++|++|+..|+ ++.+...++....++....
T Consensus 311 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~-~~~~~~~~~~~~~~~~~~~ 389 (464)
T 2a8x_A 311 NGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGY-DVVVAKFPFTANAKAHGVG 389 (464)
T ss_dssp GCSSCSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEEECSSSEEEEEECCHHHHHHTTC-CEEEEEEEGGGCHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEEEECCCCeEEEcCCHHHHHhcCC-CEEEEEEEcchhhhhhhcC
Confidence 9988999999999999999999833334 5677899999999999999999999999865 6888888887777765556
Q ss_pred CceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 417 QEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 417 ~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
.+.+|+|+++|+++++|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 390 ~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 455 (464)
T 2a8x_A 390 DPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECFH 455 (464)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTTHHHHHHHH
T ss_pred CCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999987653
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-71 Score=572.57 Aligned_cols=449 Identities=31% Similarity=0.495 Sum_probs=396.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhh-hhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELED-ARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~g~ 100 (498)
.+|||+|||||+||+++|..|++.|++|+|||+ ...+||+|.+.||+|++.++..+.....+.. ...+|+
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~---------~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~ 75 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEK---------RGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGV 75 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEEC---------SSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeC---------CCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCc
Confidence 468999999999999999999999999999994 3368999999999999999888777666654 555666
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
... ...++|..++.+.......+...+...+++.+++++.+++..++++.+.|.+.+|....++||+||+|||++|..|
T Consensus 76 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p 154 (470)
T 1dxl_A 76 KVS-NVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSL 154 (470)
T ss_dssp EES-CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCB
T ss_pred ccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence 533 3457898888888777777777777777888999999998889999998877666335899999999999999999
Q ss_pred CCCCCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 181 PIPGQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 181 ~i~g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
+++|.+ .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+++.||+
T Consensus 155 ~~~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~ 234 (470)
T 1dxl_A 155 PGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMK 234 (470)
T ss_dssp TTBCCCSSSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCcccEEeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCE
Confidence 888875 378889988888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccEEEEEEeCCeEEEEEC---CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 259 LHPRTTIKELIKSEEGVKVITD---HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
+++++.|.++..+++++.+.+. +| +++++|.||+|+|++||++++.++++|++++++|+|.||+++||++|+|||
T Consensus 235 i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iya 314 (470)
T 1dxl_A 235 FKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYA 314 (470)
T ss_dssp EECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEE
T ss_pred EEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCCCCEEE
Confidence 9999999999876655666654 44 679999999999999999987778889999988999999999999999999
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccc
Q 042564 334 VGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTI 413 (498)
Q Consensus 334 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
+|||++.+++++.|.+||+++|+||++. ....++..+|+++|++|+++++|++|++|+..|+ ++.+...++....++.
T Consensus 315 ~GD~~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~-~~~~~~~~~~~~~~~~ 392 (470)
T 1dxl_A 315 IGDVIPGPMLAHKAEEDGVACVEYLAGK-VGHVDYDKVPGVVYTNPEVASVGKTEEQVKETGV-EYRVGKFPFMANSRAK 392 (470)
T ss_dssp CSTTSSSCCCHHHHHHHHHHHHHHHTTS-CCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTC-CEEEEEEEGGGCHHHH
T ss_pred EeccCCCCccHHHHHHHHHHHHHHHcCC-CcCCCCCCCCEEEECCCceEEEcCCHHHHHhcCC-cEEEEEEecccchHHH
Confidence 9999998889999999999999999975 3445678899999999999999999999998855 7888888887777765
Q ss_pred ccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 414 SGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 414 ~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
....+.+|+|+++|+++++|+|++++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 393 ~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 461 (470)
T 1dxl_A 393 AIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAM 461 (470)
T ss_dssp HHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHH
T ss_pred hcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHH
Confidence 556678999999999899999999999999999999999999999999999999999999999987653
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-70 Score=564.98 Aligned_cols=448 Identities=29% Similarity=0.433 Sum_probs=392.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcC-
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSY- 98 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~- 98 (498)
|+.++||+|||||+||+++|++|++.|++|+||| +..+||+|.|.||+|+|.++..+.........+.+
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie----------~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~ 70 (467)
T 1zk7_A 1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIE----------RGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDG 70 (467)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEE----------SSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEe----------CCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcC
Confidence 4456899999999999999999999999999999 55789999999999999998887766555555544
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhH-HHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNG-IYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
|+.. .....+|..+..+.......+.. .+...+.+. +++++.+++.+++++.+.|.+.+|+...++||+||+|||++
T Consensus 71 g~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~ 149 (467)
T 1zk7_A 71 GIAA-TVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGAS 149 (467)
T ss_dssp TSCC-CCCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEE
T ss_pred CccC-CCCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCC
Confidence 4432 23567888888777666655543 344566777 99999999999999999998877744589999999999999
Q ss_pred CCCCCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHh
Q 042564 177 AQRAPIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEG 254 (498)
Q Consensus 177 p~~p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~ 254 (498)
|+.|++||.+. ++++++++++...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++ +++++.+.+.+.+++
T Consensus 150 p~~p~i~G~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~ 228 (467)
T 1zk7_A 150 PAVPPIPGLKESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR-EDPAIGEAVTAAFRA 228 (467)
T ss_dssp ECCCCCTTTTTSCCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCceecHHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC-CCHHHHHHHHHHHHh
Confidence 99999999753 678888888888899999999999999999999999999999999999999 999999999999999
Q ss_pred CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEe
Q 042564 255 RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAV 334 (498)
Q Consensus 255 ~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~ 334 (498)
.||++++++.|.++..+++...+.++ +.++++|.||+|+|++|+.+.+.++..+++++++|+|.||++++|+.|+|||+
T Consensus 229 ~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya~ 307 (467)
T 1zk7_A 229 EGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAA 307 (467)
T ss_dssp TTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEEC
T ss_pred CCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCEEEE
Confidence 99999999999999887766667776 45799999999999999998766788899999889999999999999999999
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccc
Q 042564 335 GDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTIS 414 (498)
Q Consensus 335 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 414 (498)
|||+..+.+++.|..||+++|.||++. ....++..+|++.|++|+++++|++|++|+..|+ ++.+....+....+++.
T Consensus 308 GD~~~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~a~vG~~~~~a~~~g~-~~~~~~~~~~~~~~~~~ 385 (467)
T 1zk7_A 308 GDCTDQPQFVYVAAAAGTRAAINMTGG-DAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGI-ETDSRTLTLDNVPRALA 385 (467)
T ss_dssp STTBSSCCCHHHHHHHHHHHHHHHTTC-CCCCCCTTCEEEECSSSEEEEEECCHHHHHHTTC-CEEEEEEEGGGCHHHHH
T ss_pred eccCCCcccHHHHHHHHHHHHHHHcCC-CcccCCCCCCEEEecCCceEEEecCHHHHHhcCC-CeEEEEEecccchhhhh
Confidence 999998889999999999999999976 3456677899999999999999999999998865 67777777776666655
Q ss_pred cCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 415 GRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 415 ~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
...+.+|+|+++++++++|+|++++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 386 ~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 453 (467)
T 1zk7_A 386 NFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQ 453 (467)
T ss_dssp TTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTTHHHHHHHH
T ss_pred cCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHH
Confidence 56678999999999899999999999999999999999999999999999999999999999988653
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-70 Score=562.43 Aligned_cols=449 Identities=29% Similarity=0.489 Sum_probs=390.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCC
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYG 99 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g 99 (498)
+.+|||+||||||||+++|..|++.|++|+|||+ ...+||+|.+.||+|+|.++..+.....+. ....+|
T Consensus 3 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~---------~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g 73 (478)
T 1v59_A 3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEK---------RGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRG 73 (478)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGT
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999999999999999999999999994 367899999999999999998887766654 456666
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEE------EEcCeEEEcC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLS------YSAKHILIAT 173 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~------~~~d~liiAt 173 (498)
+.......++|..+..+.....+.+...+...+++.+++++.++..+.+++.+.|.+.+|.... ++||+||+||
T Consensus 74 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAt 153 (478)
T 1v59_A 74 IDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVAT 153 (478)
T ss_dssp EEECSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECC
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECc
Confidence 6542235678999888888777777777777888899999999988888888988876662235 9999999999
Q ss_pred CCCCCCCCCCCCC----cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHH
Q 042564 174 GSRAQRAPIPGQE----LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA 249 (498)
Q Consensus 174 G~~p~~p~i~g~~----~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~ 249 (498)
|++|.. +||.+ .+++++++..+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.
T Consensus 154 Gs~p~~--~~g~~~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~ 231 (478)
T 1v59_A 154 GSEVTP--FPGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQ 231 (478)
T ss_dssp CEEECC--CTTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHH
T ss_pred CCCCCC--CCCCCCCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHH
Confidence 998843 34432 478889988888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEcCccEEEEEE--eCCeEEEEEC-----CCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCC
Q 042564 250 RNLEGRGINLHPRTTIKELIK--SEEGVKVITD-----HGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDE 322 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~--~~~~~~v~~~-----~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~ 322 (498)
+.+++.||++++++.|.++.. +++.+.+.+. +++++++|.||+|+|++||++.+.+++.|++++++|+|.||+
T Consensus 232 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~ 311 (478)
T 1v59_A 232 KFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDD 311 (478)
T ss_dssp HHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCT
T ss_pred HHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECc
Confidence 999999999999999999987 4555666665 456799999999999999998544788999999889999999
Q ss_pred CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEE
Q 042564 323 NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVF 402 (498)
Q Consensus 323 ~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~ 402 (498)
++||+.|+|||+|||+..+++++.|.+||+++|+||++.. ...+|..+|++.|++|+++++|++|+||+..|+ ++.+.
T Consensus 312 ~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~-~~~~~ 389 (478)
T 1v59_A 312 QFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGH-GHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGI-DYKIG 389 (478)
T ss_dssp TSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHSC-CCCCTTSCCEEECSSSEEEEEECCHHHHHHTTC-CEEEE
T ss_pred CCccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCEEEEcCCcEEEEECCHHHHHHcCC-CEEEE
Confidence 9999999999999999988999999999999999999743 345788899999999999999999999998855 67777
Q ss_pred EEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 403 TSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
..++....++.....+.+|+|+++++++++|+|++++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 469 (478)
T 1v59_A 390 KFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANM 469 (478)
T ss_dssp EEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHH
T ss_pred EEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCCHHHHHHHHHH
Confidence 77777766665455678999999998899999999999999999999999999999999999999999999999887643
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-69 Score=555.58 Aligned_cols=439 Identities=30% Similarity=0.448 Sum_probs=387.6
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhc---CC
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARS---YG 99 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~---~g 99 (498)
+|||+||||||||++||.+|++.|++|+||| +..+||+|.+.||+|+|.++..+...+.+..... +|
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie----------~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g 74 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVE----------GQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLG 74 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEEC----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEc----------cCCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccC
Confidence 5899999999999999999999999999999 5679999999999999999998888777766666 77
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+... ...++|..++.+.....+.+...+...+++.+++++.+++.+++++.+.+ ++ ..++||+||||||++|+.
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v---~~--~~~~~d~lviATGs~p~~ 148 (458)
T 1lvl_A 75 ISVA-SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEV---DG--QRIQCEHLLLATGSSSVE 148 (458)
T ss_dssp CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEE---TT--EEEECSEEEECCCEEECC
T ss_pred cccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEE---ee--EEEEeCEEEEeCCCCCCC
Confidence 7653 46789999999998888888888888888899999999988888877665 22 479999999999999987
Q ss_pred CC-CCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 180 AP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 180 p~-i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
|+ ++....++++++++.+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.+++.||+
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~ 228 (458)
T 1lvl_A 149 LPMLPLGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIA 228 (458)
T ss_dssp BTTBCCBTTEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCE
T ss_pred CCCCCccCcEecHHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCE
Confidence 76 55333578889998888889999999999999999999999999999999999999989999999999999999999
Q ss_pred EEcCccEEEEEEeCCeEEEEECCC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecc
Q 042564 259 LHPRTTIKELIKSEEGVKVITDHG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD 336 (498)
+++++.|.++.. + .+.+...+| +++++|.|++|+|++|+.+++.++..|++++++ +|.||+++||+.|+|||+||
T Consensus 229 i~~~~~v~~i~~-~-~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t~~~~Iya~GD 305 (458)
T 1lvl_A 229 LHLGHSVEGYEN-G-CLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQTSMHNVWAIGD 305 (458)
T ss_dssp EETTCEEEEEET-T-EEEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBCSSTTEEECGG
T ss_pred EEECCEEEEEEe-C-CEEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcCCCCCEEEeec
Confidence 999999999976 3 355554456 589999999999999999986678889999887 89999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccC
Q 042564 337 VTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGR 416 (498)
Q Consensus 337 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
|+..+++++.|.+||+++|+||++.. ...++..+|++.|++|+++++|++|++|+..|+ ++.+....+....++....
T Consensus 306 ~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~p~~a~vG~~e~~a~~~g~-~~~~~~~~~~~~~~~~~~~ 383 (458)
T 1lvl_A 306 VAGEPMLAHRAMAQGEMVAEIIAGKA-RRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGL-DCIVAQFPFAANGRAMSLE 383 (458)
T ss_dssp GGCSSCCHHHHHHHHHHHHHHHTTCC-CCCCCSCCCEEECSSSEEEEEECCHHHHHHTTC-CEEEEEEEGGGCHHHHHTT
T ss_pred cCCCcccHHHHHHHHHHHHHHhcCCC-ccCCCCCCCEEEECCCCeEEEeCCHHHHHHcCC-CEEEEEEECccchhhhhcC
Confidence 99999999999999999999999743 345677899999999999999999999999865 6777777776666654456
Q ss_pred CceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 417 QEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 417 ~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
.+.+|+|+++|+++++|+|++++|+.+.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 384 ~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~ 449 (458)
T 1lvl_A 384 SKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAAL 449 (458)
T ss_dssp CCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHH
T ss_pred CCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999887543
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-69 Score=554.94 Aligned_cols=444 Identities=30% Similarity=0.464 Sum_probs=395.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+||||||||+++|.+|++.|++|+|||+ ...+||+|.+.||+|+|.++..+.....+.. ..+|+..
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~---------~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~g~~~ 70 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEK---------EKALGGTCLRVGCIPSKALLETTERIYEAKK-GLLGAKV 70 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH-CCTTEEE
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCeEEEEeC---------CCCCCCccceecchhHHHHHHHHHHHHHHhh-hcCCccc
Confidence 38999999999999999999999999999994 3368999999999999999988877776665 6677664
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
. ...++|..+..+.....+.+...+...+++.+++++.+++.+++++.+.|.+ +|. .+.||+||+|||++|..|++
T Consensus 71 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~-~g~--~~~~d~lviAtG~~p~~~~~ 146 (455)
T 2yqu_A 71 K-GVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEE-TGE--ELEARYILIATGSAPLIPPW 146 (455)
T ss_dssp C-CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETT-TCC--EEEEEEEEECCCEEECCCTT
T ss_pred C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEee-CCE--EEEecEEEECCCCCCCCCCC
Confidence 3 3567899988888877777777777778888999999998888888888865 553 79999999999999999988
Q ss_pred CCCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 183 PGQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 183 ~g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
+|.+ .++++++++.+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.+++.||+++
T Consensus 147 ~g~~~~~v~~~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 226 (455)
T 2yqu_A 147 AQVDYERVVTSTEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIR 226 (455)
T ss_dssp BCCCSSSEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCcCcEechHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEE
Confidence 8865 37888998888888999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC
Q 042564 261 PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR 340 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 340 (498)
++++|.++..+++++.+.+.+|+++++|.||+|+|++|+.+++.++..|+.++++|+|.||++++|+.|+|||+|||+..
T Consensus 227 ~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 306 (455)
T 2yqu_A 227 TGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRG 306 (455)
T ss_dssp CSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSS
T ss_pred ECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCCC
Confidence 99999999988777788888888999999999999999998866788899998889999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCcee
Q 042564 341 MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT 420 (498)
Q Consensus 341 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
+++++.|.+||+++|+||++. ....++..+|++.|++|+++++|++|++++..|+ ++.+....+....++.....+.+
T Consensus 307 ~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~a~~G~~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~ 384 (455)
T 2yqu_A 307 PMLAHKASEEGIAAVEHMVRG-FGHVDYQAIPSVVYTHPEIAAVGYTEEELKAQGI-PYKVGKFPYSASGRARAMGETEG 384 (455)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS-CCCCCGGGCCEEECSSSEEEEEECCHHHHHHHTC-CEEEEEEEGGGCHHHHHHTCCCC
T ss_pred ccCHHHHHHhHHHHHHHHcCC-CccCCCCCCCEEEEcCCceEEEECCHHHHHHcCC-CEEEEEEEcccchHHHhcCCCcE
Confidence 999999999999999999974 3345667789999999999999999999998865 67777777776666555556788
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 421 ~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
|+|+++++++++|+|++++|+.+.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 385 ~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~~~~ 446 (455)
T 2yqu_A 385 FIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAAL 446 (455)
T ss_dssp EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHHHHH
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHH
Confidence 99999999899999999999999999999999999999999999999999999999987653
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-70 Score=567.29 Aligned_cols=441 Identities=23% Similarity=0.367 Sum_probs=374.6
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcC
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSY 98 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 98 (498)
.+..++||+|||||++|+++|.+|++.|++|+|||+ ...+||+|.+.||+|++.++..+.....+.....|
T Consensus 39 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~---------~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~ 109 (523)
T 1mo9_A 39 NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDR---------WPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQ 109 (523)
T ss_dssp TCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeC---------CCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhc
Confidence 445679999999999999999999999999999993 22389999999999999998888777777666666
Q ss_pred Ccccccccc--cCHHHHHHHHHHHHHHHhHHHH---HHH-----HhCCcEEE-EeEEEEEeCCEEEEEeCCCceEEEEcC
Q 042564 99 GWEVHEKID--FDWKKLLQKKTDEILRLNGIYK---RLL-----SNAGVKLY-EGEGKIVGPNEVEVTQLDGTKLSYSAK 167 (498)
Q Consensus 99 g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~gv~~~-~~~~~~i~~~~~~v~~~~g~~~~~~~d 167 (498)
++ +..... +....+ ...+...+. ..+ .+.+++++ .+.+.+++++.+.+ ++. .+.||
T Consensus 110 g~-~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~---~g~--~~~~d 176 (523)
T 1mo9_A 110 YW-FPDMTEKVVGIKEV-------VDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEA---AGK--VFKAK 176 (523)
T ss_dssp TT-CCCCTTCCCCHHHH-------HHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEE---TTE--EEEBS
T ss_pred Cc-HHHHHhhhhhHHHH-------HHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEE---CCE--EEEeC
Confidence 64 111000 012222 222222222 444 67799998 77888888877665 243 79999
Q ss_pred eEEEcCCCCCCCCCCCCCCc--ccChHHHh-ccccCC-CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHH
Q 042564 168 HILIATGSRAQRAPIPGQEL--AITSDEAL-SLEELP-KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDE 243 (498)
Q Consensus 168 ~liiAtG~~p~~p~i~g~~~--~~~~~~~~-~l~~~~-~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~ 243 (498)
+||+|||+.|..|+++|.+. ++++++++ .+...+ ++++|||+|++|+|+|..+.++|.+|+++++.+.+++.++++
T Consensus 177 ~lViATGs~p~~p~i~G~~~~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~ 256 (523)
T 1mo9_A 177 NLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNE 256 (523)
T ss_dssp CEEECCCEECCCCCSTTTTSBTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHH
T ss_pred EEEECCCCCCCCCCCCCcccCcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHH
Confidence 99999999999999999864 67888888 787788 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCe----EEEEECCCe-EEEcCEEEEecCCCcCCC-CCCcccCCceeCCCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEG----VKVITDHGE-EIVADVVLFATGRAPNTK-RLNLKAVGVEVDQTGA 317 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~----~~v~~~~g~-~i~~D~vi~a~G~~p~~~-~l~l~~~gi~~~~~g~ 317 (498)
+.+.+.+.+++.||++++++.|.++..++++ +.+.+.+|+ ++++|.||+|+|++|+++ + ++.+|++++++|+
T Consensus 257 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~--l~~~gl~~~~~G~ 334 (523)
T 1mo9_A 257 TRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAEL--AKILGLDLGPKGE 334 (523)
T ss_dssp HHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHH--HHHHTCCBCTTSC
T ss_pred HHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccC--HHHcCCccCCCCC
Confidence 9999999999999999999999999875555 678888887 899999999999999997 4 6788999998899
Q ss_pred eEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCC
Q 042564 318 VKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKG 397 (498)
Q Consensus 318 i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~ 397 (498)
|.||+++||++|+|||+|||++.+++++.|.+||+++|+||++.. ...++..+|+++|++|++++||+||++|+..|+
T Consensus 335 i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~- 412 (523)
T 1mo9_A 335 VLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEK-ISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGH- 412 (523)
T ss_dssp BCCCTTSBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCC-CCCCCCSCCEEEESSSEEEEEECCHHHHHHTTC-
T ss_pred EEECCCCccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCCceEEEeCCHHHHHhCCC-
Confidence 999999999999999999999988999999999999999999843 344577899999999999999999999999865
Q ss_pred CEEEEEEecCC--------------Ccccccc--CCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHH
Q 042564 398 DILVFTSSFNP--------------MRNTISG--RQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKA 461 (498)
Q Consensus 398 ~~~~~~~~~~~--------------~~~~~~~--~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~ 461 (498)
++.+....+.. ..++... ..+.+|+|+++|+++++|+|+|++|+++.|+|+.++++|++++|++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~ 492 (523)
T 1mo9_A 413 EIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVD 492 (523)
T ss_dssp CEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHH
T ss_pred CEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence 68887777765 3444444 5667999999999999999999999999999999999999999999
Q ss_pred HHhcC--cCCCCChhHHHHHHHHHHH
Q 042564 462 QFDST--VGIHPSSAEEFVTMRSVTR 485 (498)
Q Consensus 462 ~l~~~--~~~~pt~~e~~~~~~~~~~ 485 (498)
||.++ +++|||++|.+.+++...|
T Consensus 493 ~l~~~~~~~~~Pt~~e~~~~~~~~~~ 518 (523)
T 1mo9_A 493 ELGDMDELFLNPTHFIQLSRLRAGSK 518 (523)
T ss_dssp HHHTSCCCSSCSCCHHHHHHHHTTCS
T ss_pred HHHhCCcceECCCHHHHHHHHHHhhH
Confidence 99999 9999999999987765444
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-68 Score=560.96 Aligned_cols=459 Identities=36% Similarity=0.635 Sum_probs=391.7
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
..+|||+||||||||++||.+|++.|++|+|||+.... .....+.+||+|.+.||+|++.+...+.....+.+...||+
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~-~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~ 183 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPT-PIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGW 183 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCC-TTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCc-ccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCc
Confidence 34699999999999999999999999999999941100 00112358999999999999999988887777778888887
Q ss_pred ccccc-cccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 101 EVHEK-IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 101 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
..... ...+|..+..+....+..+...+...+...+|+++.+.+.+++++.+.+...+|+...+.||+||||||++|+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~ 263 (598)
T 2x8g_A 184 SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKY 263 (598)
T ss_dssp CCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCC
Confidence 65432 57899999998888888777666667778899999999999999999888777644579999999999999999
Q ss_pred CCCCCCC-cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 180 APIPGQE-LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 180 p~i~g~~-~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
|++||.+ ..+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++. .+++.+++++.+.+.+.+++.||+
T Consensus 264 p~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~gv~ 342 (598)
T 2x8g_A 264 PEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRGFDQQMAEKVGDYMENHGVK 342 (598)
T ss_dssp CSSTTHHHHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred CCCCCcccceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCcCCHHHHHHHHHHHHhCCCE
Confidence 9999964 35677788877778899999999999999999999999999999998 677889999999999999999999
Q ss_pred EEcCccEEEEEEe------C---CeEEEE--ECCCeEEE--cCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCC
Q 042564 259 LHPRTTIKELIKS------E---EGVKVI--TDHGEEIV--ADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSR 325 (498)
Q Consensus 259 i~~~~~v~~i~~~------~---~~~~v~--~~~g~~i~--~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~ 325 (498)
+++++.+.++... + +.+.+. ..+|++++ +|.||+|+|++||++++.++..|++++++|+|.||++++
T Consensus 343 i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~ 422 (598)
T 2x8g_A 343 FAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQ 422 (598)
T ss_dssp EEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTSB
T ss_pred EEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCCc
Confidence 9999988888643 1 334343 46776655 999999999999998876788899999899999999999
Q ss_pred CCCCCeEEecccC-CCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEE
Q 042564 326 TNVPSIWAVGDVT-NRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFT 403 (498)
Q Consensus 326 t~~~~iya~GD~~-~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~ 403 (498)
|++|+|||+|||+ +.+.+++.|.+||+++|+||++......+|..+|+++|++|+++++|+||++|+.+ +..++.++.
T Consensus 423 ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~ 502 (598)
T 2x8g_A 423 TTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYH 502 (598)
T ss_dssp CSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEE
T ss_pred CCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEECCCceEEEeCCHHHHHhhCCCCcEEEEE
Confidence 9999999999995 45789999999999999999976666678889999999999999999999999876 222477887
Q ss_pred EecCCCccccccC-CceeEEEEEEEC-CCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 404 SSFNPMRNTISGR-QEKTVMKLVVDA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 404 ~~~~~~~~~~~~~-~~~~~~kl~~~~-~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
..+.+..++.... ...+|+|+++++ ++++|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++.
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 582 (598)
T 2x8g_A 503 SNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFTTLH 582 (598)
T ss_dssp EEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCC
T ss_pred EeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHHHH
Confidence 7787766665443 367999999995 68999999999999999999999999999999999999999999999887643
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-61 Score=492.56 Aligned_cols=400 Identities=16% Similarity=0.226 Sum_probs=315.9
Q ss_pred cEEEECCChhHHHHHHHHHhCC--CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 25 DLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g--~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+||||||||||++||.+|++.| .+|+|||+ .+ . .|..+.|+|+.. .... ...
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~------~~---~---~~~~~~~l~~~~----~~~~----------~~~ 55 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEK------DR---D---MSFANCALPYVI----GEVV----------EDR 55 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEES------SS---C---SSBCGGGHHHHH----TTSS----------CCG
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeC------CC---C---CCCCcchhHHHH----cCCc----------cch
Confidence 6999999999999999999977 57999994 21 1 122333566311 0000 000
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCE--EEEEe-CCCceEEEEcCeEEEcCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNE--VEVTQ-LDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~--~~v~~-~~g~~~~~~~d~liiAtG~~p~ 178 (498)
........ +.++++.++++..++ +..+|... +.+.. ..++..++.||+||||||++|+
T Consensus 56 ~~~~~~~~------------------~~~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~ 117 (437)
T 4eqs_A 56 RYALAYTP------------------EKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASAN 117 (437)
T ss_dssp GGTBCCCH------------------HHHHHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEEC
T ss_pred hhhhhcCH------------------HHHHHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccc
Confidence 00001111 122344689988875 66777654 33333 2344567999999999999999
Q ss_pred CCCCCCCCc--ccChHHHhccc-----cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHH
Q 042564 179 RAPIPGQEL--AITSDEALSLE-----ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARN 251 (498)
Q Consensus 179 ~p~i~g~~~--~~~~~~~~~l~-----~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~ 251 (498)
.|+++|... ..+.++...+. ..+++++|||+|++|+|+|..++++|.+|+++++.+++++.+|+++.+.+.+.
T Consensus 118 ~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~ 197 (437)
T 4eqs_A 118 SLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDE 197 (437)
T ss_dssp CCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHH
T ss_pred cccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHH
Confidence 999988532 33445444432 34789999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCe
Q 042564 252 LEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSI 331 (498)
Q Consensus 252 l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~i 331 (498)
++++||++++++.|.++... .+++++|+++++|.|++|+|++||+++ ++..|++++++|+|.||+++||++|||
T Consensus 198 l~~~gV~i~~~~~v~~~~~~----~v~~~~g~~~~~D~vl~a~G~~Pn~~~--~~~~gl~~~~~G~I~vd~~~~Ts~p~I 271 (437)
T 4eqs_A 198 LDKREIPYRLNEEINAINGN----EITFKSGKVEHYDMIIEGVGTHPNSKF--IESSNIKLDRKGFIPVNDKFETNVPNI 271 (437)
T ss_dssp HHHTTCCEEESCCEEEEETT----EEEETTSCEEECSEEEECCCEEESCGG--GTTSSCCCCTTSCEECCTTCBCSSTTE
T ss_pred hhccceEEEeccEEEEecCC----eeeecCCeEEeeeeEEEEeceecCcHH--HHhhhhhhccCCcEecCCCccCCCCCE
Confidence 99999999999999988532 377899999999999999999999987 678899999999999999999999999
Q ss_pred EEecccCCC----------CCChHHHHHHHHHHHHHHhCCCCC-CCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEE
Q 042564 332 WAVGDVTNR----------MNLTPVALMEGTCFAKTVFGGQPC-KPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDIL 400 (498)
Q Consensus 332 ya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~ 400 (498)
||+|||++. +++++.|.+||+++|+||+|.+.. ..++..+|++.|++|++++||+||+||++.++ +
T Consensus 272 yA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~~---~ 348 (437)
T 4eqs_A 272 YAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDY---K 348 (437)
T ss_dssp EECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGSCE---E
T ss_pred EEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHHHHhCCc---e
Confidence 999999863 467899999999999999987653 44667789999999999999999999987643 3
Q ss_pred EEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECC-ChhHHHHHHHHHHHCCCCHHHHhcCcCC-CCChhHHHH
Q 042564 401 VFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGP-EAPEIMQGIAVALKCGATKAQFDSTVGI-HPSSAEEFV 478 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~-~a~~~i~~~~~~i~~~~~~~~l~~~~~~-~pt~~e~~~ 478 (498)
+....+....+.+ ...+++|+|+++|+++++|||+|++|+ .|.|+|+.+++||++++|++||.++.+. ||++++.+.
T Consensus 349 ~~~~~~~~~~~~~-~~~~~g~~Kli~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~~~d 427 (437)
T 4eqs_A 349 MVEVTQGAHANYY-PGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSHPKD 427 (437)
T ss_dssp EEEEEEESSCTTS-SSCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSSC
T ss_pred EEEEecCCchhhc-CCCCcEEEEEEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCchHH
Confidence 3333333333333 356789999999999999999999998 4999999999999999999999999765 899998653
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-59 Score=480.24 Aligned_cols=415 Identities=25% Similarity=0.342 Sum_probs=326.9
Q ss_pred CccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
++||+|||||+||+++|..|++. |.+|+|||+ .+ .+++. ...+|..
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~------~~---~~~~~---~~~~p~~-------------------- 50 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEA------TE---WVSHA---PCGIPYV-------------------- 50 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS------SS---CCC--------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEEC------CC---ccccC---CcCCccc--------------------
Confidence 47999999999999999999996 889999994 21 11110 0012210
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEe-EEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG-EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
..+ ..++..+..+ ..+.+.++.+++++.+ ++..++...+.+.+.++ ...+.||+||+|||++|+.
T Consensus 51 -~~~--~~~~~~~~~~----------~~~~~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g-~~~~~~d~lviAtG~~p~~ 116 (449)
T 3kd9_A 51 -VEG--LSTPDKLMYY----------PPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGG-EKSYEWDYLVFANGASPQV 116 (449)
T ss_dssp ----------------------------CTHHHHTTCEEETTCEEEEECSSEEEEECSSS-EEEEECSEEEECCCEEECC
T ss_pred -cCC--CCCHHHhhhc----------CHHHHHHhcCcEEEecCEEEEEecCCCEEEECCc-eEEEEcCEEEECCCCCCCC
Confidence 000 0001111110 0112234679999998 58889998888877654 3579999999999999999
Q ss_pred CCCCCCCc--c---cChHHHhcccc-----CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHH
Q 042564 180 APIPGQEL--A---ITSDEALSLEE-----LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVV 248 (498)
Q Consensus 180 p~i~g~~~--~---~~~~~~~~l~~-----~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l 248 (498)
|++||.+. + .+.++...+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+
T Consensus 117 p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l 196 (449)
T 3kd9_A 117 PAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDIL 196 (449)
T ss_dssp CSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHH
T ss_pred CCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHH
Confidence 99998753 2 24445444332 4679999999999999999999999999999999999988 999999999
Q ss_pred HHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCC
Q 042564 249 ARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNV 328 (498)
Q Consensus 249 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~ 328 (498)
.+.+++. |++++++.+.++..++ .+.....+++++++|.||+|+|++|+.++ ++.+|++++++|+|.||+++||++
T Consensus 197 ~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~~~G~i~vd~~~~t~~ 272 (449)
T 3kd9_A 197 EEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVILATGIKPNIEL--AKQLGVRIGETGAIWTNEKMQTSV 272 (449)
T ss_dssp HHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEECSCEEECCHH--HHHTTCCBCTTSSBCCCTTCBCSS
T ss_pred HHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEEeeCCccCHHH--HHhCCccCCCCCCEEECCCCccCC
Confidence 9999999 9999999999997654 33333557788999999999999999986 678899999999999999999999
Q ss_pred CCeEEecccCC-------C---CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCC
Q 042564 329 PSIWAVGDVTN-------R---MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGD 398 (498)
Q Consensus 329 ~~iya~GD~~~-------~---~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~ 398 (498)
|+|||+|||+. . +++++.|.+||+++|+||+|.......+..+|++.|++|+++++|+||+||+++|+ +
T Consensus 273 ~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~-~ 351 (449)
T 3kd9_A 273 ENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGY-D 351 (449)
T ss_dssp TTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTC-C
T ss_pred CCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCHHHHHHCCC-c
Confidence 99999999984 2 57899999999999999998765554556778999999999999999999999865 4
Q ss_pred EEEEEEecCCCcccccc-CCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcC-cCCCCChhHH
Q 042564 399 ILVFTSSFNPMRNTISG-RQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDST-VGIHPSSAEE 476 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~-~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e~ 476 (498)
+.+.... ...++... ..+.+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.++ +++||+++|.
T Consensus 352 ~~~~~~~--~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~ 429 (449)
T 3kd9_A 352 VRTAFIK--ASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAPV 429 (449)
T ss_dssp EEEEEEE--EESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBCS
T ss_pred eEEEEEe--cCCccccCCCCceEEEEEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCCc
Confidence 5444332 23333222 457899999999999999999999999999999999999999999999998 6689999998
Q ss_pred HHHHHHHHHHHhcc
Q 042564 477 FVTMRSVTRRVAAA 490 (498)
Q Consensus 477 ~~~~~~~~~~~~~~ 490 (498)
+..+..++++...|
T Consensus 430 ~~~~~~~~~~~~~~ 443 (449)
T 3kd9_A 430 WDPLIVLARVLKEG 443 (449)
T ss_dssp SCHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHhhc
Confidence 77766666666544
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-59 Score=481.33 Aligned_cols=408 Identities=21% Similarity=0.260 Sum_probs=318.0
Q ss_pred ccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+||+|||||+||++||.+|++. |.+|+|||+ .+ .+ ||.|............
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~------~~---~~-------g~~~~~~~~~~~~~~~----------- 55 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDK------QA---TV-------GYLSGGLSAYFNHTIN----------- 55 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECS------SS---CC-------SSCCC----------------------
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEEC------CC---CC-------cccCccchhhhcCCCC-----------
Confidence 5999999999999999999997 899999994 21 11 1233222111110000
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
++. .+.......+.+.+++++.+. +..++.. .+.+...+ ....+.||++|+|||++|.
T Consensus 56 -------~~~-----------~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~-~~~~~~~d~lviAtG~~p~ 116 (452)
T 3oc4_A 56 -------ELH-----------EARYITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKE-EQQWYSYDKLILATGASQF 116 (452)
T ss_dssp -----------------------CCCCHHHHHHTTEEEECSCEEEEEETTTTEEEEEETT-EEEEEECSEEEECCCCCBC
T ss_pred -------CHH-----------HhhcCCHHHHHHCCCEEEECCEEEEEECCCCEEEEEecC-ceEEEEcCEEEECCCcccC
Confidence 000 000001223455788887654 6666654 45554222 3458999999999999999
Q ss_pred CCCCCCCCc--ccChHH------HhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHH
Q 042564 179 RAPIPGQEL--AITSDE------ALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVA 249 (498)
Q Consensus 179 ~p~i~g~~~--~~~~~~------~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~ 249 (498)
.|++||.+. +++..+ +..+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++. +++++.+.+.
T Consensus 117 ~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~ 196 (452)
T 3oc4_A 117 STQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQ 196 (452)
T ss_dssp CCCCBTTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHH
T ss_pred CCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHH
Confidence 999998753 333322 2233456899999999999999999999999999999999999986 8999999999
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
+.+++.||++++++.|.++..+++++.+.++++ ++++|.||+|+|++|+++++ +.. +.++++|+|.||+++||++|
T Consensus 197 ~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l--~~~-~~~~~~g~i~vd~~~~t~~~ 272 (452)
T 3oc4_A 197 KSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQLAYL--DKK-IQRNLDQTIAVDAYLQTSVP 272 (452)
T ss_dssp HHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCCCSSC--CTT-SCBCTTSCBCCCTTCBCSST
T ss_pred HHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCChHHH--Hhh-hccCCCCCEEECcCccCCCC
Confidence 999999999999999999987666677778777 89999999999999999974 433 78888999999999999999
Q ss_pred CeEEecccCCC----------CCChHHHHHHHHHHHHHHhCCCCCCC-CCCCCcEEEeccCCeeEeeCCHHHHHHcCCCC
Q 042564 330 SIWAVGDVTNR----------MNLTPVALMEGTCFAKTVFGGQPCKP-DYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGD 398 (498)
Q Consensus 330 ~iya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~-~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~ 398 (498)
+|||+|||++. +++++.|..||+++|+||++...... .+..+|+++|+ +++++||+||+||++.|+ +
T Consensus 273 ~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~-~~~a~vG~te~~a~~~g~-~ 350 (452)
T 3oc4_A 273 NVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLRTMGTKVGD-YYLASTGLTETEGLFFPQ-T 350 (452)
T ss_dssp TEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCCCCCCCCCEEEEETT-EEEEEEECCSGGGGGSSS-C
T ss_pred CEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCccccEEEEEcC-eeEEEecCCHHHHHHCCC-c
Confidence 99999999975 36899999999999999998654433 56678889996 799999999999998755 5
Q ss_pred EEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECC-ChhHHHHHHHHHHHCCCCHHHHhcC-cCCCCChhHH
Q 042564 399 ILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGP-EAPEIMQGIAVALKCGATKAQFDST-VGIHPSSAEE 476 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~-~a~~~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e~ 476 (498)
+.+....+.. +++ ...+.+|+|+++++++++|||+|++|+ +|.|+|+.+++||++++|++||.++ +++|||++|.
T Consensus 351 ~~~~~~~~~~--~~~-~~~~~~~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~ 427 (452)
T 3oc4_A 351 LASIIVRQPA--PPL-QHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNI 427 (452)
T ss_dssp EEEEEEEEEC--TTT-TCSCEEEEEEEEETTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCS
T ss_pred eEEEEEecCC--ccC-CCCCeEEEEEEEECCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCc
Confidence 6655544432 222 245789999999999999999999999 7999999999999999999999998 8999999997
Q ss_pred HHHHHHHHHH
Q 042564 477 FVTMRSVTRR 486 (498)
Q Consensus 477 ~~~~~~~~~~ 486 (498)
+.-+..++++
T Consensus 428 ~~~~~~a~~~ 437 (452)
T 3oc4_A 428 YDITNLMGAS 437 (452)
T ss_dssp SCHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 6654444433
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-59 Score=481.44 Aligned_cols=420 Identities=22% Similarity=0.285 Sum_probs=304.9
Q ss_pred CccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCc-hhhHHHHHHhHhhHHHhhhhcCC
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGC-VPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
++||+|||||+||+++|..|++. |.+|+|||+ .+.. + +..| +|.. .
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~------~~~~---~----~~~~gl~~~----~-------------- 51 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQ------ASRI---S----YGGCGIPYY----V-------------- 51 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECC------C---------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEEC------CCcc---c----ccccccchh----h--------------
Confidence 36999999999999999999997 899999994 2111 1 1111 1210 0
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCC--EEEEEe-CCCceEEEEcCeEEEcCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPN--EVEVTQ-LDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~--~~~v~~-~~g~~~~~~~d~liiAtG~ 175 (498)
.+ ...+...+.... ..+....+.+.++.++++..+. +..++.. .+.+.. .+|....+.||+||+|||+
T Consensus 52 ---~g-~~~~~~~~~~~~----~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~ 123 (472)
T 3iwa_A 52 ---SG-EVSNIESLQATP----YNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGS 123 (472)
T ss_dssp -------------------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred ---cC-CCCchHHhcccc----chhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCC
Confidence 00 000000000000 0011112223334688887654 6667654 455543 2355568999999999999
Q ss_pred CCCCCCCCCCCc-----ccChHHHhccc-----cCCCeEEEEcCCHHHHHHHHHHHHC-CCcEEEEeeCCCCCC-CCCHH
Q 042564 176 RAQRAPIPGQEL-----AITSDEALSLE-----ELPKRAVVLGGGYIAVEFASIWRGM-GSTVDLLFRKELPLR-GFDDE 243 (498)
Q Consensus 176 ~p~~p~i~g~~~-----~~~~~~~~~l~-----~~~~~v~ViG~G~~g~e~a~~l~~~-g~~V~lv~~~~~~l~-~~~~~ 243 (498)
+|..|++||.+. ..+.++...+. ..+++++|||+|++|+|+|..+.++ |.+|+++++.+.+++ .++++
T Consensus 124 ~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~ 203 (472)
T 3iwa_A 124 KANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKS 203 (472)
T ss_dssp EECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHH
T ss_pred CcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHH
Confidence 999999998752 23445544443 4579999999999999999999999 999999999999998 79999
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDEN 323 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~ 323 (498)
+.+.+.+.+++.||++++++.|.++..+++.+.+.+.+|+++++|.||+|+|++|+.++ +++.|++++++|+|.||++
T Consensus 204 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~~~g~i~vd~~ 281 (472)
T 3iwa_A 204 LSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQL--ARDAGLELDPRGAIIVDTR 281 (472)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHH--HHHHTCCBCTTCCEECCTT
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHH--HHhCCccCCCCCCEEECCC
Confidence 99999999999999999999999998866677788889989999999999999999986 5778999999999999999
Q ss_pred CCCCCCCeEEecccC-------CC---CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHH
Q 042564 324 SRTNVPSIWAVGDVT-------NR---MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIE 393 (498)
Q Consensus 324 ~~t~~~~iya~GD~~-------~~---~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~ 393 (498)
+||++|||||+|||+ +. +++++.|.+||+++|+||+|...........++..|++|+++++|+||+||++
T Consensus 282 ~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~ 361 (472)
T 3iwa_A 282 MRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGLTVEGALR 361 (472)
T ss_dssp CBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEEEECCHHHHHH
T ss_pred cccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCceeEEEECCHHHHHH
Confidence 999999999999998 32 46889999999999999998655433333344567889999999999999999
Q ss_pred cCCCCEEEEEEecCCCcccccc-CCceeEEEEEEECCCCeEEEEEEECC---ChhHHHHHHHHHHHCCCCHHHHhcCcCC
Q 042564 394 QGKGDILVFTSSFNPMRNTISG-RQEKTVMKLVVDAETEKVLGASMCGP---EAPEIMQGIAVALKCGATKAQFDSTVGI 469 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kl~~~~~~~~i~G~~~~g~---~a~~~i~~~~~~i~~~~~~~~l~~~~~~ 469 (498)
+|+ ++.+... ....++... ..+.+|+|+++|+++++|||+|++|+ .+.|+|+.+++||++++|++||.+++++
T Consensus 362 ~g~-~~~~~~~--~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~ 438 (472)
T 3iwa_A 362 EGY-DAVNVHV--EQFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVV 438 (472)
T ss_dssp TTC-CEEEEEE--EC-----------CEEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC
T ss_pred cCC-ceEEEEE--ecCCccCccCCCceEEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhccccc
Confidence 865 5554443 333444333 56789999999999999999999999 4589999999999999999999999999
Q ss_pred C-CChhHHHHHHHHHHHH
Q 042564 470 H-PSSAEEFVTMRSVTRR 486 (498)
Q Consensus 470 ~-pt~~e~~~~~~~~~~~ 486 (498)
| ||++|.+..+..++..
T Consensus 439 ~~P~~~~~~~~~~~~~~~ 456 (472)
T 3iwa_A 439 YSPPFASAMDIVNVAGNV 456 (472)
T ss_dssp --------CCHHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHH
Confidence 8 9999987655444433
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-57 Score=464.37 Aligned_cols=412 Identities=20% Similarity=0.278 Sum_probs=318.6
Q ss_pred ccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+||+|||||+||+++|..|++. |.+|+|||+ .+ .. .+.+| ......... ..
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~------~~---~~----~~~~~---~~~~~~~g~-----------~~ 53 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEM------ND---NI----SFLSC---GIALYLGKE-----------IK 53 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEES------SS---CC----CBCGG---GHHHHHTTC-----------BG
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEEC------CC---CC----Ccccc---cchhhhcCC-----------cc
Confidence 5899999999999999999997 999999994 11 11 12222 111111000 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeC-CCceEEEEcCeEEEcCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQL-DGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~-~g~~~~~~~d~liiAtG~~p 177 (498)
.+++..+ .......+.+.+++++.++ +..++ ++.+.+... +++...++||+||+|||++|
T Consensus 54 -----~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p 117 (452)
T 2cdu_A 54 -----NNDPRGL-----------FYSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKP 117 (452)
T ss_dssp -----GGCGGGG-----------BSCCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred -----cCCHHHh-----------hhcCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCc
Confidence 0011111 0011223455789998876 66665 456666542 23345799999999999999
Q ss_pred CCCCCCCCCc--ccC------hHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-CCCHHHHHHH
Q 042564 178 QRAPIPGQEL--AIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR-GFDDEMRAVV 248 (498)
Q Consensus 178 ~~p~i~g~~~--~~~------~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~-~~~~~~~~~l 248 (498)
+.|++||.+. +++ ..++......+++++|||+|++|+|+|..|.++|.+|+++++.+.+++ .+++++.+.+
T Consensus 118 ~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l 197 (452)
T 2cdu_A 118 TVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDIL 197 (452)
T ss_dssp CCCCCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHH
T ss_pred CCCCCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHH
Confidence 9999998742 332 223344445689999999999999999999999999999999999988 5999999999
Q ss_pred HHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCC
Q 042564 249 ARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNV 328 (498)
Q Consensus 249 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~ 328 (498)
.+.+++.||++++++.|.++..+++.+.....+|+++++|.||+|+|++|++++ ++.. ++++++|+|.||+++||++
T Consensus 198 ~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~l--l~~~-l~~~~~G~i~Vd~~~~t~~ 274 (452)
T 2cdu_A 198 AKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTEL--LKGK-VAMLDNGAIITDEYMHSSN 274 (452)
T ss_dssp HHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCGG--GTTT-SCBCTTSCBCCCTTSBCSS
T ss_pred HHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHHH--HHHh-hhcCCCCCEEECCCcCcCC
Confidence 999999999999999999998755555433347888999999999999999986 5666 8888889999999999999
Q ss_pred CCeEEecccCCC----------CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCC
Q 042564 329 PSIWAVGDVTNR----------MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGD 398 (498)
Q Consensus 329 ~~iya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~ 398 (498)
|+|||+|||+.. +++++.|.+||+++|+||++.......+...++..|++|+++++|++|++|+..|+ +
T Consensus 275 ~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~-~ 353 (452)
T 2cdu_A 275 RDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVSTGINTALAKANNL-K 353 (452)
T ss_dssp TTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTC-C
T ss_pred CCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCCCcCCCccceEEEEECCeeeEeecCCHHHHHHcCC-c
Confidence 999999999973 46899999999999999998643334445567777779999999999999998765 4
Q ss_pred EEEEEEecCCCcccccc-CCceeEEEEEEECCCCeEEEEEEECC-ChhHHHHHHHHHHHCCCCHHHHhcC-cCCCCChhH
Q 042564 399 ILVFTSSFNPMRNTISG-RQEKTVMKLVVDAETEKVLGASMCGP-EAPEIMQGIAVALKCGATKAQFDST-VGIHPSSAE 475 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~-~~~~~~~kl~~~~~~~~i~G~~~~g~-~a~~~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e 475 (498)
+.+.. +....++... ..+.+|+|+++++++++|+|++++|+ ++.|+|+.++++|++++|++||..+ +++|||++|
T Consensus 354 ~~~~~--~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e 431 (452)
T 2cdu_A 354 VSEVI--IADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDR 431 (452)
T ss_dssp CEEEE--EEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCC
T ss_pred eEEEE--EecCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCc
Confidence 44432 3333333322 34678999999988999999999999 8999999999999999999999986 899999999
Q ss_pred HHHHHHHHH
Q 042564 476 EFVTMRSVT 484 (498)
Q Consensus 476 ~~~~~~~~~ 484 (498)
.+..+..++
T Consensus 432 ~~~~~~~aa 440 (452)
T 2cdu_A 432 PFNYLNILG 440 (452)
T ss_dssp SSCHHHHHH
T ss_pred hHHHHHHHH
Confidence 876654443
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-57 Score=467.92 Aligned_cols=415 Identities=21% Similarity=0.279 Sum_probs=321.9
Q ss_pred CccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
++||+|||||+||+++|..|++. |.+|+|||+ .+..+ +..|. +|.. .. +
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~------~~~~~--~~~~~----~~~~----~~------------~- 86 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEK------GEIYS--YAQCG----LPYV----IS------------G- 86 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECS------SSCCS--BCGGG----HHHH----HT------------T-
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEEC------CCCCC--CCCCC----cchh----hc------------C-
Confidence 36999999999999999999985 899999994 11111 12221 2210 00 0
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEe-CCCceEEEEcCeEEEcCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQ-LDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~-~~g~~~~~~~d~liiAtG~~ 176 (498)
...++..+..+. .+.+.++.+++++.+. +..++ .+.+.+.. .+|+...+.||+||+|||++
T Consensus 87 -----~~~~~~~l~~~~----------~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~ 151 (480)
T 3cgb_A 87 -----AIASTEKLIARN----------VKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVR 151 (480)
T ss_dssp -----SSSCGGGGBSSC----------HHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred -----CcCCHHHhhhcC----------HHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCc
Confidence 000111111000 1112234589998864 56676 45666654 34544479999999999999
Q ss_pred CCCCCCCCCCc--c---cChHHHhcccc-----CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHH
Q 042564 177 AQRAPIPGQEL--A---ITSDEALSLEE-----LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA 246 (498)
Q Consensus 177 p~~p~i~g~~~--~---~~~~~~~~l~~-----~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~ 246 (498)
|+.|++||.+. + .+.++...+.+ .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++.+++++.+
T Consensus 152 p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~ 231 (480)
T 3cgb_A 152 PVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAE 231 (480)
T ss_dssp ECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHH
T ss_pred ccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHH
Confidence 99999998742 3 34566655543 68999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCC
Q 042564 247 VVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRT 326 (498)
Q Consensus 247 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t 326 (498)
.+.+.+++.||++++++.|.++..+++...+.++ +.++++|.||+|+|++|+.++ ++..|++++++|+|.||+++||
T Consensus 232 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D~vi~a~G~~p~~~~--l~~~g~~~~~~G~I~Vd~~~~t 308 (480)
T 3cgb_A 232 YIYKEADKHHIEILTNENVKAFKGNERVEAVETD-KGTYKADLVLVSVGVKPNTDF--LEGTNIRTNHKGAIEVNAYMQT 308 (480)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEESSBEEEEEET-TEEEECSEEEECSCEEESCGG--GTTSCCCBCTTSCBCCCTTSBC
T ss_pred HHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcCEEEECcCCCcChHH--HHhCCcccCCCCCEEECCCccC
Confidence 9999999999999999999999865332345554 457999999999999999986 6778899998899999999999
Q ss_pred CCCCeEEecccCCC----------CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCC
Q 042564 327 NVPSIWAVGDVTNR----------MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGK 396 (498)
Q Consensus 327 ~~~~iya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~ 396 (498)
++|+|||+|||+.. +++++.|.+||+++|+||++.......+..+|+..|++|+++++|++|++|+..|+
T Consensus 309 s~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~ 388 (480)
T 3cgb_A 309 NVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHI 388 (480)
T ss_dssp SSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTC
T ss_pred CCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCCccCCCccceeEEEECCcEEEEeCCCHHHHHHcCC
Confidence 99999999999942 36789999999999999998654444566789999999999999999999998765
Q ss_pred CCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHhcC-cCCCCChh
Q 042564 397 GDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPE-APEIMQGIAVALKCGATKAQFDST-VGIHPSSA 474 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~-a~~~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~ 474 (498)
++.+............ ...+.+|+|+++++++++|+|++++|+. +.|+|+.++++|++++|++||.++ +++|||++
T Consensus 389 -~~~~~~~~~~~~~~~~-~~~~~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~ 466 (480)
T 3cgb_A 389 -PYKTVKVDSTNMAGYY-PNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYN 466 (480)
T ss_dssp -CEEEEEEEEESSCTTS-TTCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTC
T ss_pred -ceEEEEEecCCccccc-CCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCC
Confidence 4554433332212112 2356789999999889999999999998 999999999999999999999997 67999999
Q ss_pred HHHHHHHHHHHH
Q 042564 475 EEFVTMRSVTRR 486 (498)
Q Consensus 475 e~~~~~~~~~~~ 486 (498)
|.+..+..++.+
T Consensus 467 e~~~~~~~a~~~ 478 (480)
T 3cgb_A 467 SVWDPIQQAARR 478 (480)
T ss_dssp CSSCHHHHHHHH
T ss_pred CchhHHHHHHHh
Confidence 988776655544
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-57 Score=460.81 Aligned_cols=412 Identities=22% Similarity=0.300 Sum_probs=317.2
Q ss_pred ccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+||+|||||+||+++|..|++. |.+|+|||+ .+ ..| +.+| ........ .+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~------~~---~~~----~~~~---~~~~~~~~---------~~--- 52 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEK------GD---FIS----FLSA---GMQLYLEG---------KV--- 52 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEES------SS---SSS----BCGG---GHHHHHTT---------SS---
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEEC------CC---ccC----cccc---cchhhhcC---------cc---
Confidence 3899999999999999999996 999999994 11 111 2222 11111000 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEe-CCCceEEEEcCeEEEcCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQ-LDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~-~~g~~~~~~~d~liiAtG~~p 177 (498)
.++..+ .......+.+.+++++.+. +..++ .+.+.+.. .+|+..+++||+||+|||++|
T Consensus 53 ------~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p 115 (447)
T 1nhp_A 53 ------KDVNSV-----------RYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP 115 (447)
T ss_dssp ------CCGGGS-----------BSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred ------CCHHHh-----------hcCCHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCc
Confidence 001000 0011123445689997776 44564 45566654 345444689999999999999
Q ss_pred CCCCCCCCC--cccCh---HHHhccc---c--CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-CCCHHHHH
Q 042564 178 QRAPIPGQE--LAITS---DEALSLE---E--LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR-GFDDEMRA 246 (498)
Q Consensus 178 ~~p~i~g~~--~~~~~---~~~~~l~---~--~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~-~~~~~~~~ 246 (498)
..|++||.+ .++++ ++...+. . .+++++|||+|++|+|+|..+++.|.+|+++++.+.+++ .+++++.+
T Consensus 116 ~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 195 (447)
T 1nhp_A 116 FELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTD 195 (447)
T ss_dssp CCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHH
T ss_pred CCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHH
Confidence 999999875 24443 3333332 2 689999999999999999999999999999999998888 48999999
Q ss_pred HHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCC
Q 042564 247 VVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRT 326 (498)
Q Consensus 247 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t 326 (498)
.+.+.+++.||++++++.|.++..++....+.+ +++++++|.||+|+|++|+.++ ++.. ++++++|+|.||+++||
T Consensus 196 ~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~~--~~~~-~~~~~~G~i~Vd~~~~t 271 (447)
T 1nhp_A 196 VLTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPNTAW--LKGT-LELHPNGLIKTDEYMRT 271 (447)
T ss_dssp HHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEESCGG--GTTT-SCBCTTSCBCCCTTCBC
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCChHH--HHhh-hhhcCCCcEEECccccC
Confidence 999999999999999999999976532224555 5568999999999999999986 4556 77888899999999999
Q ss_pred CCCCeEEecccCCC----------CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCC
Q 042564 327 NVPSIWAVGDVTNR----------MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGK 396 (498)
Q Consensus 327 ~~~~iya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~ 396 (498)
+.|+|||+|||+.. +++++.|.+||+++|+||++.......+...|+..|++|+++++|+++++|+..|+
T Consensus 272 ~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~ 351 (447)
T 1nhp_A 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGK 351 (447)
T ss_dssp SSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHHTC
T ss_pred CCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCCCCCCCccccEEEEECCeeeEEecCCHHHHHHcCC
Confidence 99999999999962 46899999999999999998543344456788999999999999999999998765
Q ss_pred CCEEEEEEecCCCcccccc-CCceeEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHhcC-cCCCCCh
Q 042564 397 GDILVFTSSFNPMRNTISG-RQEKTVMKLVVDAETEKVLGASMCGPE-APEIMQGIAVALKCGATKAQFDST-VGIHPSS 473 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~-~~~~~~~kl~~~~~~~~i~G~~~~g~~-a~~~i~~~~~~i~~~~~~~~l~~~-~~~~pt~ 473 (498)
++.+.. +....++... ..+.+|+|+++++++++|+|+|++|+. +.|+|+.++++|++++|++||.++ +++|||+
T Consensus 352 -~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~ 428 (447)
T 1nhp_A 352 -ETKAVT--VVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAF 428 (447)
T ss_dssp -CCEEEE--EEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTT
T ss_pred -ceEEEE--EEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCC
Confidence 343332 2222333222 456789999999889999999999998 999999999999999999999997 7999999
Q ss_pred hHHHHHHHHHHHHH
Q 042564 474 AEEFVTMRSVTRRV 487 (498)
Q Consensus 474 ~e~~~~~~~~~~~~ 487 (498)
+|.+..+..++..+
T Consensus 429 ~e~~~~~~~aa~~~ 442 (447)
T 1nhp_A 429 DKPWNIINTAALEA 442 (447)
T ss_dssp CCSSCHHHHHHHHH
T ss_pred CCcccHHHHHHHHH
Confidence 99887766555543
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-57 Score=475.87 Aligned_cols=404 Identities=21% Similarity=0.276 Sum_probs=312.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCc-hhhHHHHHHhHhhHHHhhhhcC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGC-VPKKILVYGASFGGELEDARSY 98 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~ 98 (498)
.++||+|||||+||++||.+|++. |.+|+|||+ .+.. | +..| +|. ...
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~------~~~~---~----~~~~~lp~----~~~------------ 85 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVER------GEYI---S----FANCGLPY----YIG------------ 85 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECS------SSCS---S----BCGGGHHH----HHT------------
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEEC------CCCc---c----ccCCCCch----hhc------------
Confidence 357999999999999999999997 899999994 2211 1 1111 121 000
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEe-CCCceEEEEcCeEEEcCC
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQ-LDGTKLSYSAKHILIATG 174 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~-~~g~~~~~~~d~liiAtG 174 (498)
+.... .. ..+...+..+.++.++++..++ +..++. +.+.+.. .+|+...+.||+||+|||
T Consensus 86 g~~~~------~~----------~~~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG 149 (588)
T 3ics_A 86 GVITE------RQ----------KLLVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPG 149 (588)
T ss_dssp TSSCC------GG----------GGBSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred CcCCC------hH----------HhhccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCC
Confidence 00000 00 0011122333455789887654 556654 4555543 345555789999999999
Q ss_pred CCCCCCCCCCC-C--cccChH---HHhcc-----ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHH
Q 042564 175 SRAQRAPIPGQ-E--LAITSD---EALSL-----EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDE 243 (498)
Q Consensus 175 ~~p~~p~i~g~-~--~~~~~~---~~~~l-----~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~ 243 (498)
++|+.|++||. + .+++.. +...+ ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++.++++
T Consensus 150 ~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~ 229 (588)
T 3ics_A 150 AKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYE 229 (588)
T ss_dssp EEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHH
T ss_pred CCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHH
Confidence 99999999987 3 233322 22222 2468999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDEN 323 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~ 323 (498)
+.+.+.+.+++.||++++++.|.++..+++ .+.+.+|+++++|.||+|+|++|++++ ++..|++++++|+|.||++
T Consensus 230 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~g~~~~~~g~i~vd~~ 305 (588)
T 3ics_A 230 MAAYVHEHMKNHDVELVFEDGVDALEENGA--VVRLKSGSVIQTDMLILAIGVQPESSL--AKGAGLALGVRGTIKVNEK 305 (588)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEGGGT--EEEETTSCEEECSEEEECSCEEECCHH--HHHTTCCBCGGGCBCCCTT
T ss_pred HHHHHHHHHHHcCCEEEECCeEEEEecCCC--EEEECCCCEEEcCEEEEccCCCCChHH--HHhcCceEcCCCCEEECCc
Confidence 999999999999999999999999976544 477788989999999999999999986 6788999999999999999
Q ss_pred CCCCCCCeEEecccCC-------C---CCChHHHHHHHHHHHHHHhC-CCCCCCCCCCCcEEEeccCCeeEeeCCHHHHH
Q 042564 324 SRTNVPSIWAVGDVTN-------R---MNLTPVALMEGTCFAKTVFG-GQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAI 392 (498)
Q Consensus 324 ~~t~~~~iya~GD~~~-------~---~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~ 392 (498)
++|++|+|||+|||+. . +++++.|.+||+++|+||+| ...........+...|++|++++||+||+||+
T Consensus 306 ~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~a~vGlte~~a~ 385 (588)
T 3ics_A 306 FQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLTVATTGLNEKILK 385 (588)
T ss_dssp SBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEEEEEEECCHHHHH
T ss_pred cccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeEEEEecCCHHHHH
Confidence 9999999999999984 2 56889999999999999998 43332222223345588999999999999999
Q ss_pred HcCCCCEEEEEEecCCCccc-cccCCceeEEEEEEECCCCeEEEEEEECC-ChhHHHHHHHHHHHCCCCHHHHhcCcCCC
Q 042564 393 EQGKGDILVFTSSFNPMRNT-ISGRQEKTVMKLVVDAETEKVLGASMCGP-EAPEIMQGIAVALKCGATKAQFDSTVGIH 470 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kl~~~~~~~~i~G~~~~g~-~a~~~i~~~~~~i~~~~~~~~l~~~~~~~ 470 (498)
++|+ ++.+..... ..++ +....+.+|+|+++|+++++|||+|++|+ .+.|+|+.+++||++++|++||.+++++|
T Consensus 386 ~~g~-~~~~~~~~~--~~~~~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~~~~ 462 (588)
T 3ics_A 386 RLNI-PYEVVHVQA--NSHAGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLELSY 462 (588)
T ss_dssp HTTC-CCEEEEEEE--ESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCCCCC
T ss_pred HcCC-CeEEEEEec--CCccccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhhhcc
Confidence 9865 454444322 2222 33456789999999999999999999998 58999999999999999999999999988
Q ss_pred -CChhHHH
Q 042564 471 -PSSAEEF 477 (498)
Q Consensus 471 -pt~~e~~ 477 (498)
|++++.+
T Consensus 463 ~P~~~~~~ 470 (588)
T 3ics_A 463 APPYSSAK 470 (588)
T ss_dssp STTTCCSS
T ss_pred CCCccccc
Confidence 9987643
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=472.26 Aligned_cols=405 Identities=20% Similarity=0.296 Sum_probs=312.6
Q ss_pred ccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCc-hhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 24 FDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGC-VPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
+||+|||||+||++||..|++. |.+|+|||+ .+.. + +..| +|. ... .. .
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~------~~~~---~----~~~~~l~~----~~~----------~~-~ 53 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFER------GEYV---S----FANCGLPY----HIS----------GE-I 53 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECS------SSCS---S----BCGGGHHH----HHT----------SS-S
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEEC------CCCc---c----ccccCchH----Hhc----------CC-c
Confidence 5899999999999999999996 899999994 2211 1 1111 221 000 00 0
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCC--EEEEEe-CCCceEEEEcCeEEEcCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPN--EVEVTQ-LDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~--~~~v~~-~~g~~~~~~~d~liiAtG~~ 176 (498)
........ .....+.++.++++..++ +..++.. .+.+.. .+|...++.||+||||||++
T Consensus 54 ~~~~~~~~-----------------~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~ 116 (565)
T 3ntd_A 54 AQRSALVL-----------------QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAA 116 (565)
T ss_dssp CCGGGGBC-----------------CCHHHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred CChHHhhc-----------------cCHHHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCC
Confidence 00000000 111122234578886554 6667654 455543 23555689999999999999
Q ss_pred CCCCCCCCCCc--ccCh---HHHhcc-----ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHH
Q 042564 177 AQRAPIPGQEL--AITS---DEALSL-----EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRA 246 (498)
Q Consensus 177 p~~p~i~g~~~--~~~~---~~~~~l-----~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~ 246 (498)
|+.|++||.+. +++. .+...+ ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++.+++++.+
T Consensus 117 p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~ 196 (565)
T 3ntd_A 117 PIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAG 196 (565)
T ss_dssp ECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHH
T ss_pred CCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHH
Confidence 99999999742 3332 222222 2457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEcCccEEEEEEe-------------------CCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCccc
Q 042564 247 VVARNLEGRGINLHPRTTIKELIKS-------------------EEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKA 307 (498)
Q Consensus 247 ~l~~~l~~~Gv~i~~~~~v~~i~~~-------------------~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~ 307 (498)
.+.+.+++.||++++++.|.++..+ ++.+.+++.+|+++++|.||+|+|++|++++ ++.
T Consensus 197 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~ 274 (565)
T 3ntd_A 197 FAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQL--ARD 274 (565)
T ss_dssp HHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHH--HHH
T ss_pred HHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHH--HHh
Confidence 9999999999999999999999873 4567788889999999999999999999986 577
Q ss_pred CCceeCCCCCeEcCCCCCCCCCCeEEecccCC-------C---CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEec
Q 042564 308 VGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN-------R---MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFC 377 (498)
Q Consensus 308 ~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~-------~---~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~ 377 (498)
.|++++++|+|.||+++||++|+|||+|||+. . +++++.|.+||+++|+||+|...........++..|+
T Consensus 275 ~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~ 354 (565)
T 3ntd_A 275 AGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVF 354 (565)
T ss_dssp HTCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEET
T ss_pred CCcccCCCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEc
Confidence 89999999999999999999999999999983 2 4678999999999999999876543333344566788
Q ss_pred cCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccccc-CCceeEEEEEEECCCCeEEEEEEECCCh-hHHHHHHHHHHH
Q 042564 378 IPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISG-RQEKTVMKLVVDAETEKVLGASMCGPEA-PEIMQGIAVALK 455 (498)
Q Consensus 378 ~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kl~~~~~~~~i~G~~~~g~~a-~~~i~~~~~~i~ 455 (498)
+|+++++|++|+||+++|+ ++.+.... ...++... ..+.+|+|+++|+++++|||+|++|+++ .|+|+.+++||+
T Consensus 355 ~~~~~~vG~~e~~a~~~g~-~~~~~~~~--~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~ 431 (565)
T 3ntd_A 355 DLAVGATGKNEKQLKQAGI-AFEKVYVH--TASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQR 431 (565)
T ss_dssp TEEEEEEECCHHHHHHTTC-CCEEEEEE--EESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHH
T ss_pred CcEEEEecCCHHHHHHcCC-CeEEEEEe--cCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHH
Confidence 9999999999999999865 34433322 22333222 5678999999999999999999999998 999999999999
Q ss_pred CCCCHHHHhcCcCC-CCChhHHHH
Q 042564 456 CGATKAQFDSTVGI-HPSSAEEFV 478 (498)
Q Consensus 456 ~~~~~~~l~~~~~~-~pt~~e~~~ 478 (498)
+++|++||.++.+. ||++++.+.
T Consensus 432 ~~~~~~~l~~~~~~~~P~~~~~~~ 455 (565)
T 3ntd_A 432 AGMTVEQLQHLELSYAPPYGSAKD 455 (565)
T ss_dssp TTCBHHHHTTCCCCCCTTTCCSSC
T ss_pred cCCCHHHHhhhhhccCcccCchhh
Confidence 99999999999865 598886543
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=385.33 Aligned_cols=359 Identities=22% Similarity=0.294 Sum_probs=274.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCC--CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcC
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSY 98 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 98 (498)
+.++||+|||||+||+++|..|++.| .+|+|+|+ . .||+|++.++... +
T Consensus 2 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~----------~--------~g~~~~~~~l~~~-----------~ 52 (384)
T 2v3a_A 2 SERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITA----------D--------DGRSYSKPMLSTG-----------F 52 (384)
T ss_dssp --CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECS----------S--------CCCEECGGGGGGT-----------T
T ss_pred CCCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEEC----------C--------CCCccCcccccHH-----------H
Confidence 34589999999999999999999988 56999993 1 1344543321110 0
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
.. ......+. ......++++.+++++.+. +..++.....|...+ . .+.||+||+|||++|
T Consensus 53 ----~~--~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~--~~~~d~lviAtG~~p 113 (384)
T 2v3a_A 53 ----SK--NKDADGLA----------MAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGE-E--EVRYRDLVLAWGAEP 113 (384)
T ss_dssp ----TT--TCCHHHHE----------EECHHHHHHHTTCEEECSCCCCEEEGGGTEEEETT-E--EEECSEEEECCCEEE
T ss_pred ----hC--CCCHHHhh----------ccCHHHHHHhCCcEEEeCCEEEEEECCCCEEEECC-c--EEECCEEEEeCCCCc
Confidence 00 00111110 0112334456789988765 667776444444433 2 799999999999999
Q ss_pred CCCCCCCCC--cccChHHHhcc------ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHH
Q 042564 178 QRAPIPGQE--LAITSDEALSL------EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVV 248 (498)
Q Consensus 178 ~~p~i~g~~--~~~~~~~~~~l------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l 248 (498)
..|++||.+ .+++.+++..+ ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+
T Consensus 114 ~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l 193 (384)
T 2v3a_A 114 IRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAV 193 (384)
T ss_dssp CCCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHH
T ss_pred CCCCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHH
Confidence 999999864 34444433322 123899999999999999999999999999999999988887 589999999
Q ss_pred HHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCC
Q 042564 249 ARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNV 328 (498)
Q Consensus 249 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~ 328 (498)
.+.+++.||++++++.|.++..+++.+.+++.+|+++++|.||+|+|++|+.++ ++.+|++++ +| |.||+++||+.
T Consensus 194 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l--~~~~g~~~~-~g-i~vd~~~~t~~ 269 (384)
T 2v3a_A 194 QAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTEL--AFAAGLAVN-RG-IVVDRSLRTSH 269 (384)
T ss_dssp HHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHH--HHHTTCCBS-SS-EEECTTCBCSS
T ss_pred HHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHH--HHHCCCCCC-CC-EEECCCCCCCC
Confidence 999999999999999999998877778888999999999999999999999985 678899887 57 99999999999
Q ss_pred CCeEEecccCC--C--CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEecc-CCeeEeeCCHHHHHHcCCCCEEEEE
Q 042564 329 PSIWAVGDVTN--R--MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCI-PPLSVVGLSEEQAIEQGKGDILVFT 403 (498)
Q Consensus 329 ~~iya~GD~~~--~--~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~e~~a~~~~~~~~~~~~ 403 (498)
|+|||+|||+. . .++++.|.+||+++|+||+|.. ...++..+|+++|+. +++..+|+++.+ .....+
T Consensus 270 ~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~~-~~~~~~~~p~~~~~~~~~~~~~g~~~~~-----~~~~~~-- 341 (384)
T 2v3a_A 270 ANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNP-SQVAYGPMPVTVKTPACPLVVSPPPRGM-----DGQWLV-- 341 (384)
T ss_dssp TTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTCC-CCCCCCCCCEEECCTTSCEEEECCCTTC-----CCEEEE--
T ss_pred CCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCCC-ccCCCCCcceEEEECCeeEEEecCCCCC-----CceEEE--
Confidence 99999999985 2 3467789999999999999854 456778899999986 589999987531 111111
Q ss_pred EecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHH
Q 042564 404 SSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIA 451 (498)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~ 451 (498)
..++.+|.|++++ ++++|+|++++|+.|.|+++.+.
T Consensus 342 -----------~~~~~g~~~~~~~-~~~~i~G~~~~g~~a~e~~~~~~ 377 (384)
T 2v3a_A 342 -----------EGSGTDLKVLCRD-TAGRVIGYALTGAAVNEKLALNK 377 (384)
T ss_dssp -----------EEETTEEEEEEEC-TTSCEEEEEEEGGGGGGHHHHHT
T ss_pred -----------EecCCcEEEEEEc-cCCEEEEEEEECcchHHHHHHHH
Confidence 1234579888887 67999999999999999887653
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-48 Score=384.81 Aligned_cols=362 Identities=20% Similarity=0.297 Sum_probs=281.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
++.+|+|||||+||++||..|+..+.+|+|||+ .+ .++. ++..+|+ .+ .. .
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~------~~---~~~y---~~~~l~~-~l-~g--------------~- 58 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINS------EK---YLPY---YRPRLNE-II-AK--------------N- 58 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECS------SS---SCCB---CGGGHHH-HH-HS--------------C-
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEEC------CC---CCCc---ccChhhH-HH-cC--------------C-
Confidence 456899999999999999999888999999994 21 1110 0111111 10 00 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.+. +++.......+++.+++++.++ +..+|.....|.+.+|+ ++.||+||||||++|+.|
T Consensus 59 ------~~~-----------~~l~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~--~~~yd~lvlAtG~~p~~p 119 (385)
T 3klj_A 59 ------KSI-----------DDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGE--KIKYEKLIIASGSIANKI 119 (385)
T ss_dssp ------CCG-----------GGTBSSCHHHHHHTTCEEECSCCEEEEETTTTEEEETTSC--EEECSEEEECCCEEECCC
T ss_pred ------CCH-----------HHccCCCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCC--EEECCEEEEecCCCcCCC
Confidence 000 0011111233456799999885 88888877778887876 899999999999999999
Q ss_pred CCCCCCcc---cChHHHhccccC---CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHHHHH
Q 042564 181 PIPGQELA---ITSDEALSLEEL---PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVARNLE 253 (498)
Q Consensus 181 ~i~g~~~~---~~~~~~~~l~~~---~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~ 253 (498)
++||.+.+ .+.++...+... +++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.++
T Consensus 120 ~i~G~~~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~ 199 (385)
T 3klj_A 120 KVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLD 199 (385)
T ss_dssp CCTTCSCEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHH
Confidence 99998643 345666555432 689999999999999999999999999999999999887 89999999999999
Q ss_pred hCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 254 GRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 254 ~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
+.||++++++.+.++ |+++++|.||+|+|++|++++ ++++|+..+ +| |.||++++|+.|+|||
T Consensus 200 ~~gV~~~~~~~v~~i-------------g~~~~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g-i~vd~~~~t~~~~IyA 262 (385)
T 3klj_A 200 RLGIKIYTNSNFEEM-------------GDLIRSSCVITAVGVKPNLDF--IKDTEIASK-RG-ILVNDHMETSIKDIYA 262 (385)
T ss_dssp TTTCEEECSCCGGGC-------------HHHHHHSEEEECCCEEECCGG--GTTSCCCBS-SS-EEECTTCBCSSTTEEE
T ss_pred hCCCEEEeCCEEEEc-------------CeEEecCeEEECcCcccChhh--hhhcCCCcC-CC-EEECCCcccCCCCEEE
Confidence 999999999888766 557899999999999999987 677888876 34 9999999999999999
Q ss_pred ecccCC----CCCChHHHHHHHHHHHHHHhCCCCCCCCCCC-CcEE--EeccCCeeEeeCCHHHHHHcCCCCEEEEEEec
Q 042564 334 VGDVTN----RMNLTPVALMEGTCFAKTVFGGQPCKPDYRD-VPCA--VFCIPPLSVVGLSEEQAIEQGKGDILVFTSSF 406 (498)
Q Consensus 334 ~GD~~~----~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~-~~~~--~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~ 406 (498)
+|||+. .+.++..|..||+++|+||+|.... |.. .|+. .+++++++++|+++.+. ... +..
T Consensus 263 ~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~G~~~~~~-----~~~-~~~--- 330 (385)
T 3klj_A 263 CGDVAEFYGKNPGLINIANKQGEVAGLNACGEDAS---YSEIIPSPILKVSGISIISCGDIENNK-----PSK-VFR--- 330 (385)
T ss_dssp CGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCCCC---CCCCCCCCEEEETTEEEEEESCCTTCC-----CSE-EEE---
T ss_pred EEeeEecCCCcccHHHHHHHHHHHHHHHhcCCCcC---CCCCCCcEEEEeCCCcEEEEcCCCCCC-----CeE-EEE---
Confidence 999997 3678999999999999999986543 332 3443 44689999999997541 122 111
Q ss_pred CCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHH
Q 042564 407 NPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 479 (498)
......|.|++++ +++|+|++++|+.+.+. .+..+|+++.++++| ||++|.|.+
T Consensus 331 --------~~~~~~~~~~~~~--~~~l~g~~~~g~~~~~~--~~~~~i~~~~~~~~~-------~~~~E~~~~ 384 (385)
T 3klj_A 331 --------STQEDKYIVCMLK--ENKIDAAAVIGDVSLGT--KLKKAIDSSKSFDNI-------SSLDAILNN 384 (385)
T ss_dssp --------EECSSCEEEEEEE--TTEEEEEEEESCHHHHH--HHHHHHHTTCBCSCC-------SCHHHHHTT
T ss_pred --------ECCCCeEEEEEEE--CCEEEEEEEECCcHHHH--HHHHHHHcCCCcccc-------cCHHHHHhh
Confidence 1234569999994 68999999999976544 688999999999998 999998763
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=380.08 Aligned_cols=333 Identities=21% Similarity=0.352 Sum_probs=254.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.|++|||||+||++||..|++.| +|+|||+. ..++ +..+...+. + . +
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~----------~~~~---~~~~~l~~~----------~---~--g---- 55 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKE----------PVPY---YSKPMLSHY----------I---A--G---- 55 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEECSS----------SSCC---CCSTTHHHH----------H---T--T----
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-CEEEEECC----------CCCc---cccchhHHH----------H---h--C----
Confidence 48999999999999999999999 99999941 1110 011111100 0 0 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
..++..+..+ ....+++.+++++.++ +..++++.+.|. .+|+ +++||+||||||++|+.|++
T Consensus 56 ---~~~~~~~~~~-----------~~~~~~~~~v~~~~g~~v~~id~~~~~V~-~~g~--~~~~d~lViATGs~p~~p~i 118 (367)
T 1xhc_A 56 ---FIPRNRLFPY-----------SLDWYRKRGIEIRLAEEAKLIDRGRKVVI-TEKG--EVPYDTLVLATGARAREPQI 118 (367)
T ss_dssp ---SSCGGGGCSS-----------CHHHHHHHTEEEECSCCEEEEETTTTEEE-ESSC--EEECSEEEECCCEEECCCCS
T ss_pred ---CCCHHHhccC-----------CHHHHHhCCcEEEECCEEEEEECCCCEEE-ECCc--EEECCEEEECCCCCCCCCCC
Confidence 0111111110 1123345689999985 788888776776 4554 79999999999999999999
Q ss_pred CCCCccc---ChHHHhcccc---CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 183 PGQELAI---TSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 183 ~g~~~~~---~~~~~~~l~~---~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
||.+.++ +.+++..+.+ .+++++|||+|++|+|+|..|+++|.+|+++++.+.+++ +++++.+.+.+.+++.|
T Consensus 119 ~G~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~g 197 (367)
T 1xhc_A 119 KGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETG 197 (367)
T ss_dssp BTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTT
T ss_pred CCcCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCC
Confidence 9965444 4455554433 248999999999999999999999999999999999888 99999999999999999
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecc
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD 336 (498)
|++++++.|.++. .+ .+++++|+ +++|.|++|+|++||+++ +++.|++++ +| |.||+++||+.|||||+||
T Consensus 198 V~i~~~~~v~~i~--~~--~v~~~~g~-i~~D~vi~a~G~~p~~~l--l~~~gl~~~-~g-i~Vd~~~~t~~~~IyA~GD 268 (367)
T 1xhc_A 198 VKFFLNSELLEAN--EE--GVLTNSGF-IEGKVKICAIGIVPNVDL--ARRSGIHTG-RG-ILIDDNFRTSAKDVYAIGD 268 (367)
T ss_dssp EEEECSCCEEEEC--SS--EEEETTEE-EECSCEEEECCEEECCHH--HHHTTCCBS-SS-EECCTTSBCSSTTEEECGG
T ss_pred CEEEcCCEEEEEE--ee--EEEECCCE-EEcCEEEECcCCCcCHHH--HHhCCCCCC-CC-EEECCCcccCCCCEEEeEe
Confidence 9999999999996 22 36778888 999999999999999985 678888876 44 9999999999999999999
Q ss_pred cCCC----CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcE--EEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCc
Q 042564 337 VTNR----MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPC--AVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMR 410 (498)
Q Consensus 337 ~~~~----~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~--~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~ 410 (498)
|+.. +++++.|.+||+++|+||++... ...+ .+|+ ..|++|+++++|++|+++. .+
T Consensus 269 ~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~-~~~~~~~~~~~~~~~~vG~~~~~~~-------~~--------- 330 (367)
T 1xhc_A 269 CAEYSGIIAGTAKAAMEQARVLADILKGEPR-RYNF-KFRSTVFKFGKLQIAIIGNTKGEGK-------WI--------- 330 (367)
T ss_dssp GEEBTTBCCCSHHHHHHHHHHHHHHHTTCCC-CCCS-SCCEEEEEETTEEEEEEECCSSCEE-------EE---------
T ss_pred eeecCCCCccHHHHHHHHHHHHHHHhcCCCc-cCCC-CCCceEEEECCceEEEECCCCCCCc-------cc---------
Confidence 9742 46899999999999999997542 2222 3343 4799999999999987421 00
Q ss_pred cccccCCceeEEEEEEECCCCeEEEEEEECCChh
Q 042564 411 NTISGRQEKTVMKLVVDAETEKVLGASMCGPEAP 444 (498)
Q Consensus 411 ~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~ 444 (498)
.+|+|++++ +++|+|++++|+.+.
T Consensus 331 --------~~~~k~~~~--~~~ilG~~~~g~~~~ 354 (367)
T 1xhc_A 331 --------EDNTKVFYE--NGKIIGAVVFNDIRK 354 (367)
T ss_dssp --------ETTEEEEC-------CEEEEESCHHH
T ss_pred --------ceEEEEEEE--CCEEEEEEEECChHH
Confidence 468999996 589999999998653
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=374.80 Aligned_cols=379 Identities=20% Similarity=0.221 Sum_probs=287.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCC--cEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGA--KVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
+.+||+|||||+||+++|..|++.|. +|+|||+.... + +..+..++.++. +
T Consensus 3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~---------~----~~~~~l~~~~~~--------------~ 55 (431)
T 1q1r_A 3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI---------P----HHLPPLSKAYLA--------------G 55 (431)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSC---------C----BCSGGGGTTTTT--------------T
T ss_pred CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCC---------C----CcCCCCcHHHhC--------------C
Confidence 45899999999999999999999998 79999942110 0 000100000000 0
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
. ..+.. +.......+.+.+++++.++ +..++.....|.+.+|+ .+.||+||+|||++|+
T Consensus 56 ~-------~~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~--~~~~d~lviAtG~~p~ 115 (431)
T 1q1r_A 56 K-------ATAES-----------LYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGR--ALDYDRLVLATGGRPR 115 (431)
T ss_dssp C-------SCSGG-----------GBSSCHHHHHHTTEEEECSCCEEEEETTTTEEEETTSC--EEECSEEEECCCEEEC
T ss_pred C-------CChHH-----------hcccCHHHHHhCCCEEEeCCEEEEEECCCCEEEECCCC--EEECCEEEEcCCCCcc
Confidence 0 00000 00001123455789999886 67788755566666665 7999999999999999
Q ss_pred CCCCCCCCc--------ccChHHHhccc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHH
Q 042564 179 RAPIPGQEL--------AITSDEALSLE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRA 246 (498)
Q Consensus 179 ~p~i~g~~~--------~~~~~~~~~l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~ 246 (498)
.|++||.+. +.+.+++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+
T Consensus 116 ~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~ 195 (431)
T 1q1r_A 116 PLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSA 195 (431)
T ss_dssp CCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHH
T ss_pred CCCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHH
Confidence 999988641 24566665543 24789999999999999999999999999999999988886 8999999
Q ss_pred HHHHHHHhCCCEEEcCccEEEEEE--eCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCC
Q 042564 247 VVARNLEGRGINLHPRTTIKELIK--SEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDEN 323 (498)
Q Consensus 247 ~l~~~l~~~Gv~i~~~~~v~~i~~--~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~ 323 (498)
.+.+.+++.||++++++.|.++.. +++. ..+.+.+|+++++|.||+|+|++|+.++ ++.+|++++ +| |.||++
T Consensus 196 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~-~g-i~Vd~~ 271 (431)
T 1q1r_A 196 FYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCEL--ASAAGLQVD-NG-IVINEH 271 (431)
T ss_dssp HHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHH--HHHTTCCBS-SS-EECCTT
T ss_pred HHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcch--hhccCCCCC-CC-EEECCC
Confidence 999999999999999999999986 4444 3688889999999999999999999986 677888886 44 999999
Q ss_pred CCCCCCCeEEecccCCCC----------CChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEE--eccCCeeEeeCCHHHH
Q 042564 324 SRTNVPSIWAVGDVTNRM----------NLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAV--FCIPPLSVVGLSEEQA 391 (498)
Q Consensus 324 ~~t~~~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~--~~~~~~~~vG~~e~~a 391 (498)
++|+.|+|||+|||+..+ ..+..|..||+++|+||+|... .|..+|+.. +.++++.++|+++.
T Consensus 272 ~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p~~~~~~~~~~~~~~G~~~~-- 346 (431)
T 1q1r_A 272 MQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKVP---RDEAAPWFWSDQYEIGLKMVGLSEG-- 346 (431)
T ss_dssp SBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCCC---CCCCCCEEEEEETTEEEEEEECCTT--
T ss_pred cccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCCC---CCCCCCeEEEEECCceEEEEeCCCC--
Confidence 999999999999999752 2578899999999999997542 456678652 23478899999863
Q ss_pred HHcCCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCC
Q 042564 392 IEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHP 471 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~p 471 (498)
..++.+.. ......|++++. ++++|+|++++|+.+.+.+....++++.+++.++|.+..+.+.
T Consensus 347 ----~~~~~~~~-----------~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 409 (431)
T 1q1r_A 347 ----YDRIIVRG-----------SLAQPDFSVFYL--QGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLK 409 (431)
T ss_dssp ----CSEEEEEE-----------ETTTTEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHTCTTSCHH
T ss_pred ----CCEEEEEc-----------cCCCCeEEEEEE--eCCEEEEEEEECChHHHHHHHHHHHCCCCCCHHHhhCCCCCHH
Confidence 22222211 112345766654 4799999999999988888888888889999999998877655
Q ss_pred Ch
Q 042564 472 SS 473 (498)
Q Consensus 472 t~ 473 (498)
++
T Consensus 410 ~~ 411 (431)
T 1q1r_A 410 EI 411 (431)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=362.58 Aligned_cols=364 Identities=21% Similarity=0.298 Sum_probs=276.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCC--cEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGA--KVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
.++||+|||||+||+++|..|++.|. +|+|+|+. +. + .+..|..++.++.... .
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~------~~---~----~~~~~~~~~~~~~~~~-~---------- 61 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE------AE---R----PYDRPPLSKDFMAHGD-A---------- 61 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS------CS---C----CBCSGGGGTHHHHHCC-G----------
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECC------CC---C----cccCCCCCHHHhCCCc-h----------
Confidence 45899999999999999999999887 59999941 11 1 1111221111111100 0
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
. ... +. .+.+.+++++.++ +..++.....|...+|+ .+.||+||+|||++|+
T Consensus 62 ---~-~~~--------------------~~-~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~--~~~~d~lviAtG~~~~ 114 (408)
T 2gqw_A 62 ---E-KIR--------------------LD-CKRAPEVEWLLGVTAQSFDPQAHTVALSDGR--TLPYGTLVLATGAAPR 114 (408)
T ss_dssp ---G-GSB--------------------CC-CTTSCSCEEEETCCEEEEETTTTEEEETTSC--EEECSEEEECCCEEEC
T ss_pred ---h-hhh--------------------HH-HHHHCCCEEEcCCEEEEEECCCCEEEECCCC--EEECCEEEECCCCCCC
Confidence 0 000 00 2345689999997 88888766667776765 7999999999999999
Q ss_pred CCCC-CCCC-c---ccChHHHhcccc---CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHH
Q 042564 179 RAPI-PGQE-L---AITSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVA 249 (498)
Q Consensus 179 ~p~i-~g~~-~---~~~~~~~~~l~~---~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~ 249 (498)
.|++ ||.+ . +.+.++...+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.
T Consensus 115 ~~~i~~G~~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~ 194 (408)
T 2gqw_A 115 ALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVA 194 (408)
T ss_dssp CCGGGTTCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHH
T ss_pred CCCccCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHH
Confidence 9998 8864 2 246666655433 3789999999999999999999999999999999998885 8999999999
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
+.+++.||++++++.|.++. + + .+++.+|+++++|.||+|+|++|++++ +++.|++++ +| |.||+++||+.|
T Consensus 195 ~~l~~~GV~i~~~~~v~~i~-~-~--~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~~gl~~~-~g-i~Vd~~~~t~~~ 266 (408)
T 2gqw_A 195 RYHAAQGVDLRFERSVTGSV-D-G--VVLLDDGTRIAADMVVVGIGVLANDAL--ARAAGLACD-DG-IFVDAYGRTTCP 266 (408)
T ss_dssp HHHHHTTCEEEESCCEEEEE-T-T--EEEETTSCEEECSEEEECSCEEECCHH--HHHHTCCBS-SS-EECCTTCBCSST
T ss_pred HHHHHcCcEEEeCCEEEEEE-C-C--EEEECCCCEEEcCEEEECcCCCccHHH--HHhCCCCCC-CC-EEECCCCccCCC
Confidence 99999999999999999997 3 3 677889999999999999999999986 677888886 45 999999999999
Q ss_pred CeEEecccCCCC----------CChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEE--eccCCeeEeeCCHHHHHHcCCC
Q 042564 330 SIWAVGDVTNRM----------NLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAV--FCIPPLSVVGLSEEQAIEQGKG 397 (498)
Q Consensus 330 ~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~--~~~~~~~~vG~~e~~a~~~~~~ 397 (498)
+|||+|||+..+ .++..|.+||+++|+||++... ..|..+|+.. +.+++++++|+ +. ..
T Consensus 267 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~p~~~~~~~~~~~~~~G~-~~------~~ 337 (408)
T 2gqw_A 267 DVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA--PGYAELPWYWSDQGALRIQVAGL-AS------GD 337 (408)
T ss_dssp TEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS--CCCCCCCEEEEEETTEEEEEEEC-SC------CS
T ss_pred CEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC--CcCCCCCeEEEEECCceEEEECC-CC------CC
Confidence 999999999752 3678999999999999998543 2566678653 33589999999 21 22
Q ss_pred CEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCC--CHHHHhcC
Q 042564 398 DILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGA--TKAQFDST 466 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~--~~~~l~~~ 466 (498)
+..+ ... ......+|++++++ +++|+|++++|+.+ .+..+..+|+++. +..+|.+.
T Consensus 338 ~~~~-~~~--------~~~~~~~~~~~~~~--~~~l~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~l~~~ 395 (408)
T 2gqw_A 338 EEIV-RGE--------VSLDAPKFTLIELQ--KGRIVGATCVNNAR--DFAPLRRLLAVGAKPDRAALADP 395 (408)
T ss_dssp EEEE-ESC--------CCSSSCCEEEEEEE--TTEEEEEEEESCHH--HHHHHHHHHHTTCCCCHHHHHCT
T ss_pred EEEE-Ecc--------CCCCCCeEEEEEEe--CCEEEEEEEECChH--HHHHHHHHHHCCCCCChHHhcCC
Confidence 2211 100 01114568888774 79999999999875 3578899999988 44555553
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-43 Score=353.32 Aligned_cols=369 Identities=22% Similarity=0.270 Sum_probs=276.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCc--EEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAK--VGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~--V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
.++||+|||||+||+++|..|++.|.+ |+|+|+.... +... ..+++ .+
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~---------~y~~---~~l~~-----------------~~- 57 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEI---------PYER---PPLSK-----------------EY- 57 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSC---------CBCS---GGGGT-----------------TT-
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCC---------CcCc---ccCCH-----------------HH-
Confidence 468999999999999999999999987 9999942111 1000 00000 00
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEe-EEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG-EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
+ .+. ..+.. +.......+.+.+++++.+ ++..++.....|.+.+|. .+.||+||+|||++|+
T Consensus 58 ~--~~~--~~~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~~~~d~lvlAtG~~~~ 120 (415)
T 3lxd_A 58 L--ARE--KTFER-----------ICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGS--AIEYGKLIWATGGDPR 120 (415)
T ss_dssp T--TTS--SCSGG-----------GBSSCHHHHHHTTEEEEETCCEEEEETTTTEEEETTSC--EEEEEEEEECCCEECC
T ss_pred H--cCC--CCHHH-----------hccCCHHHHHHCCcEEEeCCEEEEEECCCCEEEECCCC--EEEeeEEEEccCCccC
Confidence 0 000 00000 0001123345579999998 588898887778777765 8999999999999999
Q ss_pred CCCCCCCCc-----ccChHHHhcccc---C-CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHH
Q 042564 179 RAPIPGQEL-----AITSDEALSLEE---L-PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVV 248 (498)
Q Consensus 179 ~p~i~g~~~-----~~~~~~~~~l~~---~-~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l 248 (498)
.|++||.+. ..+.++...+.. . +++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+
T Consensus 121 ~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l 200 (415)
T 3lxd_A 121 RLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFY 200 (415)
T ss_dssp CCBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHH
T ss_pred CCCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHH
Confidence 999998652 235555544332 3 799999999999999999999999999999999998886 899999999
Q ss_pred HHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCC
Q 042564 249 ARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTN 327 (498)
Q Consensus 249 ~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~ 327 (498)
.+.+++.||++++++.|.++..+++. ..|.+.+|+++++|.||+|+|++|+.++ ++.+|+.++ +| |.||++++|+
T Consensus 201 ~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~g-i~vd~~~~t~ 276 (415)
T 3lxd_A 201 QAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGA--LISAGASGG-NG-VDVDEFCRTS 276 (415)
T ss_dssp HHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHH--HHHTTCCCS-SS-EECCTTCBCS
T ss_pred HHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHH--HHhCCCCcC-CC-EEECCCCCcC
Confidence 99999999999999999999876655 4788999999999999999999999987 677888877 44 9999999999
Q ss_pred CCCeEEecccCCCCC-----------ChHHHHHHHHHHHHHHhCCCCCCCCCCCCcE--EEeccCCeeEeeCCHHHHHHc
Q 042564 328 VPSIWAVGDVTNRMN-----------LTPVALMEGTCFAKTVFGGQPCKPDYRDVPC--AVFCIPPLSVVGLSEEQAIEQ 394 (498)
Q Consensus 328 ~~~iya~GD~~~~~~-----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~--~~~~~~~~~~vG~~e~~a~~~ 394 (498)
+|+|||+|||+..+. +++.|..||+++|+||+|... .|..+|+ ..+.+..+.++|+++.
T Consensus 277 ~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p~~~~~~~~~~~~~~G~~~~----- 348 (415)
T 3lxd_A 277 LTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPV---PYKATPWFWSNQYDLKLQTVGLSTG----- 348 (415)
T ss_dssp STTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCCC---CCCCCCEEEEEETTEEEEEEECCTT-----
T ss_pred CCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCCC---CCCCCCeeEeeeCCcEEEEEeCCCC-----
Confidence 999999999997532 468999999999999998642 4666775 3344678889998742
Q ss_pred CCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCC--CHHHHhc
Q 042564 395 GKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGA--TKAQFDS 465 (498)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~--~~~~l~~ 465 (498)
+..+.+.. ......|.++++ ++++|+|+..+|... ....+..+|..+. +.++|.+
T Consensus 349 -~~~~~~~~-----------~~~~~~~~~~~~--~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~ 405 (415)
T 3lxd_A 349 -HDNAVLRG-----------DPATRSFSVVYL--KGGKVVALDCVNMVK--DYVQGKKLVEARAQIAPEQLAD 405 (415)
T ss_dssp -CSEEEEEE-----------EGGGTEEEEEEE--ETTEEEEEEEESCHH--HHHHHHHHHHHTCCCCHHHHTC
T ss_pred -CCEEEEEe-----------cCCCCeEEEEEE--ECCEEEEEEEECChH--HHHHHHHHHHCCCCCCHHHhcC
Confidence 22222111 123456888888 468999999999842 2344556676654 4455554
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=354.52 Aligned_cols=366 Identities=22% Similarity=0.293 Sum_probs=273.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCc--EEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAK--VGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~--V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+||+|||||+||+++|..|++.|.+ |+|||++.. . +.. +..+++..+ .. ...
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~------~---~y~---~~~l~~~~~-~g-------------~~~ 56 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPH------L---PYD---RPSLSKAVL-DG-------------SLE 56 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSS------S---SBC---SGGGGTHHH-HT-------------SSS
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCC------C---CcC---CccccHHHh-CC-------------CCC
Confidence 4899999999999999999999987 999994211 1 100 000111000 00 000
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEe-EEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG-EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.. .. .. ....+.+.+++++.+ ++..++.....|.+.+|+ ++.||+||+|||++|+.|
T Consensus 57 ~~-~~-~~------------------~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~~~~d~lvlAtG~~p~~~ 114 (410)
T 3ef6_A 57 RP-PI-LA------------------EADWYGEARIDMLTGPEVTALDVQTRTISLDDGT--TLSADAIVIATGSRARTM 114 (410)
T ss_dssp SC-CB-SS------------------CTTHHHHTTCEEEESCCEEEEETTTTEEEETTSC--EEECSEEEECCCEEECCC
T ss_pred HH-Hh-cC------------------CHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCC--EEECCEEEEccCCcccCC
Confidence 00 00 00 012234578999999 688899887778777775 899999999999999999
Q ss_pred CCCCCCc-----ccChHHHhccc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHHH
Q 042564 181 PIPGQEL-----AITSDEALSLE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVARN 251 (498)
Q Consensus 181 ~i~g~~~-----~~~~~~~~~l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~ 251 (498)
++||.+. ..+.++...+. ..+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus 115 ~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~ 194 (410)
T 3ef6_A 115 ALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGL 194 (410)
T ss_dssp CCTTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHH
T ss_pred CCCCccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHH
Confidence 9998652 23556655443 24789999999999999999999999999999999988765 789999999999
Q ss_pred HHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCe
Q 042564 252 LEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSI 331 (498)
Q Consensus 252 l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~i 331 (498)
+++.||++++++.|.++..++....+++++|+++++|.||+|+|++|+.++ ++.+|++++ + +|.||++++|+.|+|
T Consensus 195 l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~-gi~vd~~~~t~~~~I 270 (410)
T 3ef6_A 195 LTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQL--ARQAGLACD-R-GVIVDHCGATLAKGV 270 (410)
T ss_dssp HHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHH--HHHTTCCBS-S-SEECCTTSBCSSTTE
T ss_pred HHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHH--HHhCCCccC-C-eEEEccCeeECCCCE
Confidence 999999999999999998765556788999999999999999999999987 678889887 4 499999999999999
Q ss_pred EEecccCCCC---------CChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEE--EeccCCeeEeeCCHHHHHHcCCCCEE
Q 042564 332 WAVGDVTNRM---------NLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCA--VFCIPPLSVVGLSEEQAIEQGKGDIL 400 (498)
Q Consensus 332 ya~GD~~~~~---------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~~~~vG~~e~~a~~~~~~~~~ 400 (498)
||+|||+..+ .+++.|..||+++|+||+|.. ..|..+|+. .+.+..+.++|+++. .+..
T Consensus 271 yA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~---~~~~~~p~~~~~~~~~~~~~~G~~~~------~~~~- 340 (410)
T 3ef6_A 271 FAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKN---VSAPQLPVSWTEIAGHRMQMAGDIEG------PGDF- 340 (410)
T ss_dssp EECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCC---CCCCBCCEEEEEETTEEEEEESCSSS------SSEE-
T ss_pred EEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCC---CCCCCCCeeEEEECCceEEEEcCCCC------CCEE-
Confidence 9999998742 347899999999999999864 345667753 334577888998753 2111
Q ss_pred EEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCC--CHHHHhc
Q 042564 401 VFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGA--TKAQFDS 465 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~--~~~~l~~ 465 (498)
+... ......|.++++ ++++|+|+.++|+.. ....+..+|..+. +.++|++
T Consensus 341 ~~~~----------~~~~~~~~~~~~--~~~~l~g~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~ 393 (410)
T 3ef6_A 341 VSRG----------MPGSGAALLFRL--QERRIQAVVAVDAPR--DFALATRLVEARAAIEPARLAD 393 (410)
T ss_dssp EEES----------CTTSSSEEEEEE--ETTEEEEEEEESCHH--HHHHHHHHHHHTCBCCHHHHHC
T ss_pred EEEe----------eCCCCeEEEEEE--ECCEEEEEEEECChH--HHHHHHHHHhCCCCCCHHHhcC
Confidence 1110 122334777777 478999999999843 2344555666554 5566654
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-42 Score=345.53 Aligned_cols=367 Identities=21% Similarity=0.275 Sum_probs=274.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC--cEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA--KVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~--~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+||+|||||+||+++|..|++.|. +|+|||+... .+... ..+++. +......
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~---------~~y~~---~~l~~~--------------~l~~~~~ 55 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKH---------LPYQR---PPLSKA--------------YLKSGGD 55 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSS---------SSBCS---GGGGTG--------------GGGSCCC
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCC---------CCCCC---ccCCHH--------------HHCCCCC
Confidence 589999999999999999999998 9999994211 10000 000000 0000000
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
. ...... ....+.+.+++++..++..++.....+.+.+|. .+.||+||+|||++|+.|+
T Consensus 56 ~-~~~~~~------------------~~~~~~~~~i~~~~~~v~~id~~~~~v~~~~g~--~~~~d~lvlAtG~~p~~~~ 114 (404)
T 3fg2_P 56 P-NSLMFR------------------PEKFFQDQAIELISDRMVSIDREGRKLLLASGT--AIEYGHLVLATGARNRMLD 114 (404)
T ss_dssp T-TSSBSS------------------CHHHHHHTTEEEECCCEEEEETTTTEEEESSSC--EEECSEEEECCCEEECCCC
T ss_pred H-HHccCC------------------CHHHHHhCCCEEEEEEEEEEECCCCEEEECCCC--EEECCEEEEeeCCCccCCC
Confidence 0 000000 112344578999887788888877777777765 8999999999999999999
Q ss_pred CCCCCc--c---cChHHHhccc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHHHH
Q 042564 182 IPGQEL--A---ITSDEALSLE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVARNL 252 (498)
Q Consensus 182 i~g~~~--~---~~~~~~~~l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l 252 (498)
+||.+. + .+.++...+. ..+++++|||+|.+|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.+
T Consensus 115 i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l 194 (404)
T 3fg2_P 115 VPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRH 194 (404)
T ss_dssp STTTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHH
T ss_pred CCCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHH
Confidence 998642 2 2445544332 24789999999999999999999999999999999998876 8999999999999
Q ss_pred HhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCe
Q 042564 253 EGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSI 331 (498)
Q Consensus 253 ~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~i 331 (498)
++.||++++++.|.++..+++. ..|.+++|+++++|.||+|+|++|+.++ ++.+|+.++ +| |.||++++|+.|+|
T Consensus 195 ~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~G-i~vd~~~~t~~~~i 270 (404)
T 3fg2_P 195 SGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEI--AAAAGLPTA-AG-IIVDQQLLTSDPHI 270 (404)
T ss_dssp HHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHH--HHHTTCCBS-SS-EEECTTSBCSSTTE
T ss_pred HhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHH--HHhCCCCCC-CC-EEECCCcccCCCCE
Confidence 9999999999999999887655 4688999999999999999999999987 677888887 45 99999999999999
Q ss_pred EEecccCCCC----------CChHHHHHHHHHHHHHHhCCCCCCCCCCCCcE--EEeccCCeeEeeCCHHHHHHcCCCCE
Q 042564 332 WAVGDVTNRM----------NLTPVALMEGTCFAKTVFGGQPCKPDYRDVPC--AVFCIPPLSVVGLSEEQAIEQGKGDI 399 (498)
Q Consensus 332 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~--~~~~~~~~~~vG~~e~~a~~~~~~~~ 399 (498)
||+|||+..+ ..++.|..||+++|+||+|.. ..|..+|+ .-+.+..+.++|++.. ++.+
T Consensus 271 ya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~---~~~~~~p~~~~~~~~~~~~~~G~~~~------~~~~ 341 (404)
T 3fg2_P 271 SAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA---KPYDGYPWFWSDQGDDKLQIVGLTAG------FDQV 341 (404)
T ss_dssp EECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC---CCCCCCCEEEEEETTEEEEEEECCTT------CCEE
T ss_pred EEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC---CCCCCCCceEeEECCcEEEEEeCCCC------CCEE
Confidence 9999998742 247899999999999999864 24666775 3344678889998742 2222
Q ss_pred EEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCC--HHHHhc
Q 042564 400 LVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGAT--KAQFDS 465 (498)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~--~~~l~~ 465 (498)
.+ .. ......|.++++. +++|+|+..+|... ....+..+|..+.. .++|++
T Consensus 342 ~~-~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~ 394 (404)
T 3fg2_P 342 VI-RG----------SVAERSFSAFCYK--AGKLIGIESVNRAA--DHVFGRKILPLDKSVTPEQAAD 394 (404)
T ss_dssp EE-EE----------ETTTTEEEEEEEE--TTEEEEEEEESCHH--HHHHHHHHTTTTCCCCHHHHHC
T ss_pred EE-Ee----------cCCCCcEEEEEEE--CCEEEEEEEeCCHH--HHHHHHHHHHcCCCCCHHHhcC
Confidence 21 11 1234568898884 68999999999852 34456667777654 344543
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=325.46 Aligned_cols=285 Identities=24% Similarity=0.298 Sum_probs=210.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||++||++|++.|++|+||| +..+||+|.+++|+|+. +.
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE----------~~~~gG~~~~~~~i~~~---------------p~---- 55 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIE----------RGIPGGQMANTEEVENF---------------PG---- 55 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTGGGGGCSCBCCS---------------TT----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEe----------cCCCCCeeecccccCCc---------------CC----
Confidence 36999999999999999999999999999999 67789999999998731 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.......++..+. .....+....+..+. ....+.....+...+++ +++||++|||||++|+.|
T Consensus 56 ---~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~liiAtGs~~~~~ 119 (312)
T 4gcm_A 56 ---FEMITGPDLSTKM-----------FEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNK--ELTAKAVIIATGAEYKKI 119 (312)
T ss_dssp ---CSSBCHHHHHHHH-----------HHHHHHTTCEEEECCCCEEEECSSCEEEECSSC--EEEEEEEEECCCEEECCC
T ss_pred ---ccccchHHHHHHH-----------HHHHhhccccccceeeeeeeeeecceeeccCCe--EEEeceeEEcccCccCcC
Confidence 1112222322221 122334455555543 22233333333333444 899999999999999999
Q ss_pred CCCCCCcc-----cChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhC
Q 042564 181 PIPGQELA-----ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255 (498)
Q Consensus 181 ~i~g~~~~-----~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~ 255 (498)
++||.+.. ............+++++|||+|++|+|+|..|+++|.+|+++++.+++++... ...+.++..
T Consensus 120 ~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~-----~~~~~~~~~ 194 (312)
T 4gcm_A 120 GVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRI-----LQDRAFKND 194 (312)
T ss_dssp CCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHH-----HHHHHHHCT
T ss_pred CCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchh-----HHHHHHHhc
Confidence 99997532 11122222234578999999999999999999999999999999988765321 123456677
Q ss_pred CCEEEcCccEEEEEEeCCeEE---EEE---CCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 256 GINLHPRTTIKELIKSEEGVK---VIT---DHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~~~~---v~~---~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
++.......+..+...+.... ... .++..+++|.|++++|..|+..+ ++..++. +++|+|.||+++|||+|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~--~~~~g~~-~~~G~I~vd~~~~Ts~p 271 (312)
T 4gcm_A 195 KIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAP--FKDLGIT-NDVGYIVTKDDMTTSVP 271 (312)
T ss_dssp TEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGG--GGGGTCB-CTTSCBCCCTTSBCSST
T ss_pred CcceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchh--HHhccee-cCCCeEeeCCCCccCCC
Confidence 888888877777766554321 111 23457899999999999999987 5666775 56789999999999999
Q ss_pred CeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 330 SIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 330 ~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
||||+|||++. +.+++.|..||++||++|.
T Consensus 272 gIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~ 302 (312)
T 4gcm_A 272 GIFAAGDVRDKGLRQIVTATGDGSIAAQSAA 302 (312)
T ss_dssp TEEECSTTBSCSCCSHHHHHHHHHHHHHHHH
T ss_pred CEEEEeecCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999974 6789999999999999985
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=320.59 Aligned_cols=292 Identities=23% Similarity=0.262 Sum_probs=215.4
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|+..|||+||||||||++||++|++.|++|+||| +...||.|.+ ||+|++.++ .+++.+.
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE----------~~~~gg~~~~-G~~~~~~~i---------~~~~g~~ 60 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYE----------GFMAGGVAAG-GQLTTTTII---------ENFPGFP 60 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEEC----------CSSGGGCCTT-CGGGGSSEE---------CCSTTCT
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEe----------cCCCCCcccC-CCcCChHHh---------hhccCCc
Confidence 5567999999999999999999999999999999 6778999987 998854321 1111111
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEE--eCCEEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV--GPNEVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i--~~~~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
..++..++..+ +...+.+.++++....+... +...+.+.+.++. ++.||+||||||++|
T Consensus 61 ------~~i~~~~l~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~liiATG~~~ 121 (314)
T 4a5l_A 61 ------NGIDGNELMMN-----------MRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEGK--EVLTKSVIIATGATA 121 (314)
T ss_dssp ------TCEEHHHHHHH-----------HHHHHHHTTCEEECCCEEEEECSSSSEEEEETTCC--EEEEEEEEECCCEEE
T ss_pred ------ccCCHHHHHHH-----------HHHHHhhcCcEEEEeEEEEeecCCCceEEEECCCe--EEEEeEEEEcccccc
Confidence 12233333332 23344556787777665543 3344555555654 899999999999999
Q ss_pred CCCCCCCCCcc-----cChHHHhcc--ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHH
Q 042564 178 QRAPIPGQELA-----ITSDEALSL--EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVAR 250 (498)
Q Consensus 178 ~~p~i~g~~~~-----~~~~~~~~l--~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~ 250 (498)
+.|++||.+.. ......... ...+++++|||+|++|+|+|..|+++|.+|++++|.+.... .+.. ..+
T Consensus 122 ~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~--~~~~---~~~ 196 (314)
T 4a5l_A 122 KRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA--SKTM---QER 196 (314)
T ss_dssp CCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHH---HHH
T ss_pred cccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc--cchh---hhh
Confidence 99999997531 122222222 23478999999999999999999999999999998775432 3332 334
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCe---EEEEE---CCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEG---VKVIT---DHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS 324 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~---~~v~~---~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~ 324 (498)
.....++..+....+.++...+.. +.+.. .+++++++|.|++|+|++||++++. ..+.++++|.| ||+++
T Consensus 197 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~---~~~~~~~~G~i-v~~~~ 272 (314)
T 4a5l_A 197 VLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLG---GQVKTADDGYI-LTEGP 272 (314)
T ss_dssp HHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT---TSSCBCTTSCB-CCBTT
T ss_pred hhcccceeeEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHhc---ccceEcCCeeE-eCCCC
Confidence 455668889988888888765543 23332 3456899999999999999999853 34777888765 89999
Q ss_pred CCCCCCeEEecccCCCC-CChHHHHHHHHHHHHHHh
Q 042564 325 RTNVPSIWAVGDVTNRM-NLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 325 ~t~~~~iya~GD~~~~~-~~~~~A~~~g~~aa~~i~ 359 (498)
|||+|||||+|||++.+ .++..|..||+.||.++.
T Consensus 273 ~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~ 308 (314)
T 4a5l_A 273 KTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCE 308 (314)
T ss_dssp BCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 578899999999998874
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=308.81 Aligned_cols=288 Identities=24% Similarity=0.289 Sum_probs=217.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|+.++||+||||||||+++|..|++.|++|+|+| +..+||.|.+..++.. ++.+
T Consensus 5 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~gg~~~~~~~~~~---------------~~~~- 58 (325)
T 2q7v_A 5 TAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILE----------KGMPGGQIAWSEEVEN---------------FPGF- 58 (325)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTGGGGGCSCBCC---------------STTC-
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHcCCcEEEEe----------CCCCCccccccccccc---------------CCCC-
Confidence 3446899999999999999999999999999999 3467899876554321 0011
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCC---E--EEEEeCCCceEEEEcCeEEEcCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN---E--VEVTQLDGTKLSYSAKHILIATG 174 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~---~--~~v~~~~g~~~~~~~d~liiAtG 174 (498)
. ..+.+..+ ...+...+.+.+++++.+.+..++.. . +.|.+.+|. .++||+||+|||
T Consensus 59 -~----~~~~~~~~-----------~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g~--~~~~~~vv~AtG 120 (325)
T 2q7v_A 59 -P----EPIAGMEL-----------AQRMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNG--EYRAKAVILATG 120 (325)
T ss_dssp -S----SCBCHHHH-----------HHHHHHHHHHTTCEEEECCEEEEEECTTSSSCCEEEEESSC--EEEEEEEEECCC
T ss_pred -C----CCCCHHHH-----------HHHHHHHHHHcCCEEEeeeEEEEEeccCCCceEEEEECCCC--EEEeCEEEECcC
Confidence 0 01222222 22233445667899988777766533 2 566555654 799999999999
Q ss_pred CCCCCCCCCCCCc-----ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHH
Q 042564 175 SRAQRAPIPGQEL-----AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA 249 (498)
Q Consensus 175 ~~p~~p~i~g~~~-----~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~ 249 (498)
+.|..|++||.+. +............+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+. .++.+ .
T Consensus 121 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~----~ 194 (325)
T 2q7v_A 121 ADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR--ANKVA----Q 194 (325)
T ss_dssp EEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC--SCHHH----H
T ss_pred CCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC--cchHH----H
Confidence 9999999988753 22222222223356899999999999999999999999999999987653 34433 2
Q ss_pred HHH-HhCCCEEEcCccEEEEEEeCCeEEEEEC---CCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCC
Q 042564 250 RNL-EGRGINLHPRTTIKELIKSEEGVKVITD---HGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDEN 323 (498)
Q Consensus 250 ~~l-~~~Gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~ 323 (498)
+.+ ++.||++++++.+.++..++....+.+. +|+ ++++|.||+|+|++|+.++ ++.. ++++++|+|.||++
T Consensus 195 ~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~-~~~~~~g~i~vd~~ 271 (325)
T 2q7v_A 195 ARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAF--VKDT-VSLRDDGYVDVRDE 271 (325)
T ss_dssp HHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGG--GTTT-SCBCTTSCBCCBTT
T ss_pred HHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHH--Hhhh-cccCCCccEecCCC
Confidence 334 4469999999999999875433345553 564 7899999999999999987 4455 77888899999999
Q ss_pred CCCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHhC
Q 042564 324 SRTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 324 ~~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~~ 360 (498)
++|++|+|||+|||+.. ++++..|..||+++|.||..
T Consensus 272 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 309 (325)
T 2q7v_A 272 IYTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTER 309 (325)
T ss_dssp TBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986 68899999999999999863
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=332.02 Aligned_cols=326 Identities=19% Similarity=0.272 Sum_probs=230.2
Q ss_pred ccCCCCccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhh
Q 042564 18 EQTHFDFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDA 95 (498)
Q Consensus 18 ~~~~~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~ 95 (498)
..|+.++||+|||||+||++||..|++. |.+|+|||+ .+ .++ +..|.+++.++..... ......
T Consensus 6 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~------~~---~~~----y~r~~lsk~l~~~~~~-~~~~~~ 71 (493)
T 1m6i_A 6 DKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSE------DP---ELP----YMRPPLSKELWFSDDP-NVTKTL 71 (493)
T ss_dssp --CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEES------SS---SCC----BCSGGGGTGGGCC--C-THHHHC
T ss_pred CCCCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeC------CC---CCC----CCCCCCCHHhhcCCcc-chhhcc
Confidence 3445568999999999999999999875 899999994 11 111 2334555544433211 000100
Q ss_pred hcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEe-EEEEEeCCEEEEEeCCCceEEEEcCeEEEcCC
Q 042564 96 RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG-EGKIVGPNEVEVTQLDGTKLSYSAKHILIATG 174 (498)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG 174 (498)
...++... ...+.+.....+.. ...+. .+.+.+++++.+ .+..++.....|.+.+|+ .+.||+||||||
T Consensus 72 ~~~~~~~~-~~~~~~~~~~~~~~--~~~l~-----~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~--~i~yd~lviATG 141 (493)
T 1m6i_A 72 RFKQWNGK-ERSIYFQPPSFYVS--AQDLP-----HIENGGVAVLTGKKVVQLDVRDNMVKLNDGS--QITYEKCLIATG 141 (493)
T ss_dssp EEECTTSC-EEESBSSCGGGSBC--TTTTT-----TSTTCEEEEEETCCEEEEEGGGTEEEETTSC--EEEEEEEEECCC
T ss_pred cccccccc-cccccccchHhhcc--hhhhh-----hhhcCCeEEEcCCEEEEEECCCCEEEECCCC--EEECCEEEECCC
Confidence 00111100 00000000000000 00000 013468999998 477787665667777765 799999999999
Q ss_pred CCCCCCCCCCC------Cc---ccChHHHhcccc---CCCeEEEEcCCHHHHHHHHHHHH----CCCcEEEEeeCCCCCC
Q 042564 175 SRAQRAPIPGQ------EL---AITSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRG----MGSTVDLLFRKELPLR 238 (498)
Q Consensus 175 ~~p~~p~i~g~------~~---~~~~~~~~~l~~---~~~~v~ViG~G~~g~e~a~~l~~----~g~~V~lv~~~~~~l~ 238 (498)
++|+.|++++. +. ..+.+++..+.. .+++++|||+|++|+|+|..|.+ .|.+|+++++.+.++.
T Consensus 142 s~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~ 221 (493)
T 1m6i_A 142 GTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG 221 (493)
T ss_dssp EEECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT
T ss_pred CCCCCCCCcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccc
Confidence 99988765442 11 235555544432 47999999999999999999876 5789999998876665
Q ss_pred C-CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCC-CC
Q 042564 239 G-FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQ-TG 316 (498)
Q Consensus 239 ~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~-~g 316 (498)
. +++++.+.+.+.+++.||++++++.|.++..+++.+.+++.+|+++++|.||+|+|++||+++ ++.+|+++++ +|
T Consensus 222 ~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~~~~g 299 (493)
T 1m6i_A 222 KILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVEL--AKTGGLEIDSDFG 299 (493)
T ss_dssp TTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTT--HHHHTCCBCTTTC
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHH--HHHcCCccccCCC
Confidence 4 788999999999999999999999999998776667888999999999999999999999987 6778888885 58
Q ss_pred CeEcCCCCCCCCCCeEEecccCCC---------CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcE
Q 042564 317 AVKVDENSRTNVPSIWAVGDVTNR---------MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPC 373 (498)
Q Consensus 317 ~i~vd~~~~t~~~~iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~ 373 (498)
+|.||+++|| .|+|||+|||+.. ...+..|..||++||+||++... .|...|+
T Consensus 300 gi~Vd~~l~t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~~---~~~~~~~ 361 (493)
T 1m6i_A 300 GFRVNAELQA-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK---PYWHQSM 361 (493)
T ss_dssp SEECCTTCEE-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCC---CCCCCCE
T ss_pred cEEECCCccc-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCCC---CcCCcCc
Confidence 8999999998 6999999999863 23566899999999999997542 2444554
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=302.35 Aligned_cols=284 Identities=23% Similarity=0.251 Sum_probs=218.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
|||+|||||++|+++|..|++.|. +|+|+| +...||.|.+..++.. ++.+.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie----------~~~~gg~~~~~~~~~~---------------~~~~~--- 53 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFE----------KGMPGGQITGSSEIEN---------------YPGVK--- 53 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSSEEEEC----------SSSTTCGGGGCSCBCC---------------STTCC---
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCcEEEEc----------CCCCCccccccccccc---------------CCCCc---
Confidence 799999999999999999999999 999999 4567888876654321 00110
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
..++...+. ..+...+.+.+++++.+++..++ .+.+.+...+|+ .++||+||+|||+.|..|
T Consensus 54 ---~~~~~~~~~-----------~~l~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~~~vv~AtG~~~~~~ 117 (311)
T 2q0l_A 54 ---EVVSGLDFM-----------QPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGK--TFEAKSVIIATGGSPKRT 117 (311)
T ss_dssp ---SCBCHHHHH-----------HHHHHHHHTTSCEEECSCEEEEEEETTEEEEEETTSC--EEEEEEEEECCCEEECCC
T ss_pred ---ccCCHHHHH-----------HHHHHHHHHcCCEEEEEEEEEEEEcCCEEEEEEcCCC--EEECCEEEECCCCCCCCC
Confidence 112333322 22334455678998876666554 456677666665 799999999999999999
Q ss_pred CCCCCCc-----ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHH-h
Q 042564 181 PIPGQEL-----AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLE-G 254 (498)
Q Consensus 181 ~i~g~~~-----~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~-~ 254 (498)
++||.+. +.+..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+. .++.+ .+.+. +
T Consensus 118 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~----~~~l~~~ 191 (311)
T 2q0l_A 118 GIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR--CAPIT----LEHAKNN 191 (311)
T ss_dssp CCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC--SCHHH----HHHHHTC
T ss_pred CCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC--CCHHH----HHHHhhC
Confidence 9988642 22222222233456899999999999999999999999999999987753 45543 33444 4
Q ss_pred CCCEEEcCccEEEEEEeCCeE-EEEEC---CCe--EEEcCEEEEecCCCcCCCCCCcccC----CceeCCCCCeEcCCCC
Q 042564 255 RGINLHPRTTIKELIKSEEGV-KVITD---HGE--EIVADVVLFATGRAPNTKRLNLKAV----GVEVDQTGAVKVDENS 324 (498)
Q Consensus 255 ~Gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~l~~~----gi~~~~~g~i~vd~~~ 324 (498)
.||++++++.+.++..+++++ .+.+. +|+ ++++|.||+|+|++|++++ ++.. +++++++|+|.||+++
T Consensus 192 ~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~g~~~~l~~~~~g~i~vd~~~ 269 (311)
T 2q0l_A 192 DKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAV--LKQEDNSMLCKCDEYGSIVVDFSM 269 (311)
T ss_dssp TTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGG--GBCTTSCBSSCBCTTSCBCCCTTC
T ss_pred CCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhh--hhcccccceeEeccCCCEEeCCcc
Confidence 799999999999998775542 45554 565 6899999999999999987 4555 3888888999999999
Q ss_pred CCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 325 RTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 325 ~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
||++|+|||+|||+.. ++++..|..||+++|.||.
T Consensus 270 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 305 (311)
T 2q0l_A 270 KTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVI 305 (311)
T ss_dssp BCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHH
Confidence 9999999999999986 6889999999999999985
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=302.59 Aligned_cols=287 Identities=23% Similarity=0.308 Sum_probs=217.8
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcC
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSY 98 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 98 (498)
.|+.++||+|||||++|+++|+.|++.|++|+|+| +...||.|.+..++.. ++.+
T Consensus 12 ~m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~gg~~~~~~~~~~---------------~~~~ 66 (319)
T 3cty_A 12 EKERDFDVVIVGAGAAGFSAAVYAARSGFSVAILD----------KAVAGGLTAEAPLVEN---------------YLGF 66 (319)
T ss_dssp --CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSSTTGGGGGCSCBCC---------------BTTB
T ss_pred cccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEe----------CCCCCccccccchhhh---------------cCCC
Confidence 45567999999999999999999999999999999 4567888876544321 0011
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
..++...+. ..+...+.+.+++++.+++..++ .+.+.|.+ ++. .+.||+||+|||+.
T Consensus 67 -------~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~--~~~~~~li~AtG~~ 125 (319)
T 3cty_A 67 -------KSIVGSELA-----------KLFADHAANYAKIREGVEVRSIKKTQGGFDIET-NDD--TYHAKYVIITTGTT 125 (319)
T ss_dssp -------SSBCHHHHH-----------HHHHHHHHTTSEEEETCCEEEEEEETTEEEEEE-SSS--EEEEEEEEECCCEE
T ss_pred -------cccCHHHHH-----------HHHHHHHHHcCCEEEEeeEEEEEEeCCEEEEEE-CCC--EEEeCEEEECCCCC
Confidence 012222222 22334455678888876666554 45666766 443 78999999999999
Q ss_pred CCCCCCCCCCc-----ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHH
Q 042564 177 AQRAPIPGQEL-----AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARN 251 (498)
Q Consensus 177 p~~p~i~g~~~-----~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~ 251 (498)
|..|++||.+. +............+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+. .++. +.+.
T Consensus 126 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~--~~~~----l~~~ 199 (319)
T 3cty_A 126 HKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM--CENA----YVQE 199 (319)
T ss_dssp ECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC--SCHH----HHHH
T ss_pred cccCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC--CCHH----HHHH
Confidence 99998888642 11222222222346899999999999999999999999999999987653 3443 4455
Q ss_pred HHhCCCEEEcCccEEEEEEeCC-eEEEEEC---CCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCC
Q 042564 252 LEGRGINLHPRTTIKELIKSEE-GVKVITD---HGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSR 325 (498)
Q Consensus 252 l~~~Gv~i~~~~~v~~i~~~~~-~~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~ 325 (498)
+.+.||++++++.+.++..+++ ...+.+. +|+ ++++|.||+|+|+.||.++ +++.|++++++|+|.||++++
T Consensus 200 l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~ 277 (319)
T 3cty_A 200 IKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSF--LKDSGVKLDERGYIVVDSRQR 277 (319)
T ss_dssp HHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGG--GTTSCCCBCTTSCBCCCTTCB
T ss_pred HhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHH--HhhccccccCCccEeCCCCCc
Confidence 6688999999999999987654 2344443 564 6899999999999999987 567788899899999999999
Q ss_pred CCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 326 TNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 326 t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
|+.|+|||+|||+.. +.+++.|..||+++|.+|.
T Consensus 278 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 312 (319)
T 3cty_A 278 TSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLY 312 (319)
T ss_dssp CSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999999986 5789999999999999985
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=304.37 Aligned_cols=281 Identities=15% Similarity=0.173 Sum_probs=208.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc-ccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV-IRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~-~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
+++|||+||||||||++||++|++.|++|+||| +...||.+. +..+++
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie----------~~~~gg~~~~~~~~~~--------------------- 52 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFD----------NNTNRNRVTQNSHGFI--------------------- 52 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------CSCCGGGGSSCBCCST---------------------
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEe----------CCCCCCeeeeecCCcc---------------------
Confidence 356999999999999999999999999999999 455566542 111111
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEE---eCCEEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV---GPNEVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i---~~~~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
....+.+.++..... ++..+...+.++.+.+..+ +...+++.+.+|+ +++||+||||||++
T Consensus 53 ----~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~a~~liiATGs~ 116 (304)
T 4fk1_A 53 ----TRDGIKPEEFKEIGL----------NEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHT--KYLAERVLLATGMQ 116 (304)
T ss_dssp ----TCTTBCHHHHHHHHH----------HHHTTSTTEEEEECCEEEEEECTTSCEEEEETTCC--EEEEEEEEECCCCE
T ss_pred ----CCCCCCHHHHHHHHH----------HHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCC--EEEeCEEEEccCCc
Confidence 011233333332221 1222223567776665543 4456778887776 89999999999999
Q ss_pred CCCCCCCCCCc-----ccChHHHhccccCCCeEEEEcCCH-HHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHH
Q 042564 177 AQRAPIPGQEL-----AITSDEALSLEELPKRAVVLGGGY-IAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVAR 250 (498)
Q Consensus 177 p~~p~i~g~~~-----~~~~~~~~~l~~~~~~v~ViG~G~-~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~ 250 (498)
|+.|++||.+. +.+..........+++++|||+|. .++|+|..+.+.+.+|+++.+.+.+ . +.+.+
T Consensus 117 p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~----~----~~~~~ 188 (304)
T 4fk1_A 117 EEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNEL----S----QTIMD 188 (304)
T ss_dssp EECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCC----C----HHHHH
T ss_pred cccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccc----h----hhhhh
Confidence 99999999643 233333333444567788888875 5689999999999999999886543 2 33556
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
.+++.|+.++.+ .+..+..++.. ..+.+.+|+++++|.+++++|.+|+..+ +++.|++++++|+|.||+++|||+|
T Consensus 189 ~l~~~g~~~~~~-~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~--~~~~g~~~~~~G~I~vd~~~~Ts~p 265 (304)
T 4fk1_A 189 ELSNKNIPVITE-SIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQF--IEQLGCELQSNGTFVIDDFGRTSEK 265 (304)
T ss_dssp HHHTTTCCEECS-CEEEEESGGGCCCEEEETTSCEECCCEEEECCEEECSSCH--HHHTTCCCCTTSSSCSSTTCBCSST
T ss_pred hhhccceeEeee-eEEEeecCCCeeeeeeccccceeeecceeeeeccccCChh--hhhcCeEECCCCCEEECcCCccCCC
Confidence 778899999887 57777655444 5688899999999999988888777765 6788999999999999999999999
Q ss_pred CeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 330 SIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 330 ~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
||||+|||++. +..+..|..||+.||..|.
T Consensus 266 ~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~ 296 (304)
T 4fk1_A 266 NIYLAGETTTQGPSSLIIAASQGNKAAIAIN 296 (304)
T ss_dssp TEEECSHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEeccCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999964 5568899999999998773
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=302.76 Aligned_cols=284 Identities=23% Similarity=0.321 Sum_probs=220.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
++||+|||||+||+++|+.|++.|++|+||| +. +||.|.+.+++.. +
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~-~gg~~~~~~~~~~----------------------~ 61 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIG----------ET-PGGQLTEAGIVDD----------------------Y 61 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SS-TTGGGGGCCEECC----------------------S
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEe----------cc-CCCeecccccccc----------------------c
Confidence 5899999999999999999999999999999 44 7888865332210 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.......... +..++...+.+.+++++..++..++.. .+.+.+.++. .+.||+||+|||+.|..|
T Consensus 62 ~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~lvlAtG~~~~~~ 128 (323)
T 3f8d_A 62 LGLIEIQASD-----------MIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKG--EFKADSVILGIGVKRRKL 128 (323)
T ss_dssp TTSTTEEHHH-----------HHHHHHHHHHTTTCCEEESCEEEEEEC--CEEEEESSSC--EEEEEEEEECCCCEECCC
T ss_pred CCCCCCCHHH-----------HHHHHHHHHHHcCCEEEEEEEEEEEecCCEEEEEECCCC--EEEcCEEEECcCCCCccC
Confidence 0001111122 223344556667899888767766543 5777777755 899999999999999999
Q ss_pred CCCCCCc-----ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhC
Q 042564 181 PIPGQEL-----AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255 (498)
Q Consensus 181 ~i~g~~~-----~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~ 255 (498)
++||.+. +............+++++|+|+|.+|+|+|..|.+.|.+|+++++.+.+++ ++++ +.+.+++.
T Consensus 129 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~--~~~~---~~~~~~~~ 203 (323)
T 3f8d_A 129 GVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA--QPIY---VETVKKKP 203 (323)
T ss_dssp CCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS--CHHH---HHHHHTCT
T ss_pred CCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc--CHHH---HHHHHhCC
Confidence 9998753 112122222233578999999999999999999999999999999887765 3433 23333455
Q ss_pred CCEEEcCccEEEEEEeCCeEEEEECC---Ce--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCC
Q 042564 256 GINLHPRTTIKELIKSEEGVKVITDH---GE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPS 330 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~ 330 (498)
||++++++.+.++..+++...+++.+ |+ ++++|.||+|+|++|+.++ ++..+++++++|+|.||++++|+.||
T Consensus 204 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~--~~~~g~~~~~~g~i~vd~~~~t~~~~ 281 (323)
T 3f8d_A 204 NVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDF--AKSNGIETDTNGYIKVDEWMRTSVPG 281 (323)
T ss_dssp TEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHH--HHHTTCCBCTTSSBCCCTTCBCSSTT
T ss_pred CcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhH--HhhcCeeecCCCcEecCCCceecCCC
Confidence 99999999999998775545566654 65 7999999999999999886 67888999999999999999999999
Q ss_pred eEEecccCCC---CCChHHHHHHHHHHHHHHh
Q 042564 331 IWAVGDVTNR---MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 331 iya~GD~~~~---~~~~~~A~~~g~~aa~~i~ 359 (498)
|||+|||+.. +..+..|..||+.+|++|.
T Consensus 282 vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~ 313 (323)
T 3f8d_A 282 VFAAGDCTSAWLGFRQVITAVAQGAVAATSAY 313 (323)
T ss_dssp EEECSTTBSTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred EEEcceecCCCCcccceeehhhHHHHHHHHHH
Confidence 9999999985 7889999999999999985
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-37 Score=298.25 Aligned_cols=289 Identities=20% Similarity=0.225 Sum_probs=222.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEE-EccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGI-CELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~l-vek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
.++||+|||||+||+++|..|++.|++|+| +| +..+||.|.+..+++. ++.+
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e----------~~~~gG~~~~~~~~~~---------------~~~~-- 55 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFE----------KGMPGGQITSSSEIEN---------------YPGV-- 55 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEEC----------SSSTTGGGGGCSCBCC---------------STTC--
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEe----------CCCCCceeeeeceecc---------------CCCC--
Confidence 458999999999999999999999999999 99 5567898876655431 0000
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEE-eC--CEEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV-GP--NEVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i-~~--~~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
.......++ ..++...+.+.+++++.+++..+ +. +.+.+....+. .+.||+||+|||+.|
T Consensus 56 ----~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~--~~~~d~lvlAtG~~~ 118 (315)
T 3r9u_A 56 ----AQVMDGISF-----------MAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGK--TELAKAVIVCTGSAP 118 (315)
T ss_dssp ----CSCBCHHHH-----------HHHHHHHHTTTCCEEECCCEEEEEECTTSCEEEEETTSC--EEEEEEEEECCCEEE
T ss_pred ----CCCCCHHHH-----------HHHHHHHHHHcCcEEEEEEEEEEecCCCCcEEEEEecCC--EEEeCEEEEeeCCCC
Confidence 011222222 23344556677999988877766 44 55664233332 899999999999999
Q ss_pred CCCCCCCCCc-----ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHH
Q 042564 178 QRAPIPGQEL-----AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNL 252 (498)
Q Consensus 178 ~~p~i~g~~~-----~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l 252 (498)
+.|++||.+. +.+..........+++++|+|+|.+|+|+|..|.+.+.+|+++++.+.+. .++++ +.+.+
T Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~--~~~~~---~~~~~ 193 (315)
T 3r9u_A 119 KKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR--AAPST---VEKVK 193 (315)
T ss_dssp CCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB--SCHHH---HHHHH
T ss_pred CCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC--CCHHH---HHHHH
Confidence 9999998753 22333333334457899999999999999999999999999999988752 34443 34455
Q ss_pred HhCCCEEEcCccEEEEEEeCCe-EEEEEC--CCe--EEEcCEEEEecCCCcCCCCCCc-ccCC-ceeCCCCCeEcCCCCC
Q 042564 253 EGRGINLHPRTTIKELIKSEEG-VKVITD--HGE--EIVADVVLFATGRAPNTKRLNL-KAVG-VEVDQTGAVKVDENSR 325 (498)
Q Consensus 253 ~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~--~g~--~i~~D~vi~a~G~~p~~~~l~l-~~~g-i~~~~~g~i~vd~~~~ 325 (498)
++.||++++++.+.++..+++. ..+++. +|+ ++++|.||+|+|++|+..++.. +.+| ++++++|+|.||++++
T Consensus 194 ~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~ 273 (315)
T 3r9u_A 194 KNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQ 273 (315)
T ss_dssp HCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCB
T ss_pred hcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcc
Confidence 6889999999999999887644 234443 775 7899999999999999998543 3465 8899999999999999
Q ss_pred CCCCCeEEecccCC-CCCChHHHHHHHHHHHHHHh
Q 042564 326 TNVPSIWAVGDVTN-RMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 326 t~~~~iya~GD~~~-~~~~~~~A~~~g~~aa~~i~ 359 (498)
|++|+|||+|||+. .+..+..|..||+.||.+|.
T Consensus 274 t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~ 308 (315)
T 3r9u_A 274 TSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAM 308 (315)
T ss_dssp CSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHH
Confidence 99999999999986 47789999999999999985
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=303.36 Aligned_cols=293 Identities=20% Similarity=0.262 Sum_probs=220.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.++||+|||||+||+++|..|++.|++|+|||+ ...+||.|.+. .|++.+ +.
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~---------~~~~gg~~~~~--~~~~~~-----------------~~ 55 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDP---------LPEPGGQLTAL--YPEKYI-----------------YD 55 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSCHHHHHT--CTTSEE-----------------CC
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeC---------CCCCCCeeecc--CCCcee-----------------ec
Confidence 468999999999999999999999999999995 34578887432 221100 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCC---
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGS--- 175 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~--- 175 (498)
....+.+++..+. ..+...+.+.+++++.++ +..++ .+.+.|.+.+|. .+.||+||+|||+
T Consensus 56 ~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~~~lv~AtG~~~~ 122 (335)
T 2zbw_A 56 VAGFPKVYAKDLV-----------KGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGN--AYTAKAVIIAAGVGAF 122 (335)
T ss_dssp STTCSSEEHHHHH-----------HHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSC--EEEEEEEEECCTTSEE
T ss_pred cCCCCCCCHHHHH-----------HHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCC--EEEeCEEEECCCCCCC
Confidence 0011122232222 223344555678887664 55543 346778777664 7899999999998
Q ss_pred CCCCCCCCCCCcccCh---HHHhccc-cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHH
Q 042564 176 RAQRAPIPGQELAITS---DEALSLE-ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARN 251 (498)
Q Consensus 176 ~p~~p~i~g~~~~~~~---~~~~~l~-~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~ 251 (498)
.|..|+++|.+..... ..+.... ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.+ .++..+.+.+.
T Consensus 123 ~p~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~--~~~~~~~l~~~ 200 (335)
T 2zbw_A 123 EPRRIGAPGEREFEGRGVYYAVKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA--HEASVKELMKA 200 (335)
T ss_dssp EECCCCCTTTTTTBTTTEESSCSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS--CHHHHHHHHHH
T ss_pred CCCCCCCCChhhccCcEEEEecCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc--cHHHHHHHHhc
Confidence 5777888886432110 0011112 2478999999999999999999999999999999887654 46677888889
Q ss_pred HHhCCCEEEcCccEEEEEEeCCeEEEEEC---CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCC
Q 042564 252 LEGRGINLHPRTTIKELIKSEEGVKVITD---HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRT 326 (498)
Q Consensus 252 l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t 326 (498)
+++.||++++++.|.++..+++...+.+. +| +++++|.||+|+|++|+.++ +++.+++++ +|+|.||++++|
T Consensus 201 l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~-~g~i~vd~~~~t 277 (335)
T 2zbw_A 201 HEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGP--LANWGLALE-KNKIKVDTTMAT 277 (335)
T ss_dssp HHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGG--GGGSCCCEE-TTEEECCTTCBC
T ss_pred cccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchH--hhhcceecc-CCeeeeCCCCCC
Confidence 99999999999999999875443355554 66 57999999999999999987 577788887 689999999999
Q ss_pred CCCCeEEecccCC---CCCChHHHHHHHHHHHHHHhC
Q 042564 327 NVPSIWAVGDVTN---RMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 327 ~~~~iya~GD~~~---~~~~~~~A~~~g~~aa~~i~~ 360 (498)
++|+|||+|||+. .+.++..|..||+++|+||.+
T Consensus 278 ~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 314 (335)
T 2zbw_A 278 SIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAA 314 (335)
T ss_dssp SSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHH
Confidence 9999999999985 357889999999999999864
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=296.51 Aligned_cols=282 Identities=23% Similarity=0.326 Sum_probs=216.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+||||||+|+++|..|++.|.+|+|+| . ..||.|....+++. +
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~----------~-~~gG~~~~~~~~~~------------------~---- 47 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMG----------E-RFGGQILDTVDIEN------------------Y---- 47 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEEC----------S-STTGGGGGCCEECC------------------B----
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEe----------C-CCCceecccccccc------------------c----
Confidence 4899999999999999999999999999999 2 36888865443331 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEe-EEEEEeCC-----EEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG-EGKIVGPN-----EVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~~~~i~~~-----~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
......+... +...+...+.+.+++++.+ ++..++.. .+.|.+.+|. .+.||+||+|||+.
T Consensus 48 ~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~--~~~~~~lv~AtG~~ 114 (310)
T 1fl2_A 48 ISVPKTEGQK-----------LAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGA--VLKARSIIVATGAK 114 (310)
T ss_dssp TTBSSEEHHH-----------HHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSC--EEEEEEEEECCCEE
T ss_pred cCcCCCCHHH-----------HHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCC--EEEeCEEEECcCCC
Confidence 0001112222 2233445566789999998 57777543 6778777765 78999999999999
Q ss_pred CCCCCCCCCCc-----ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHH
Q 042564 177 AQRAPIPGQEL-----AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARN 251 (498)
Q Consensus 177 p~~p~i~g~~~-----~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~ 251 (498)
|..|++||.+. +............+++++|||+|++|+|+|..|.+.+.+|+++++.+.+. +++. +.+.
T Consensus 115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~----~~~~ 188 (310)
T 1fl2_A 115 WRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--ADQV----LQDK 188 (310)
T ss_dssp ECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--SCHH----HHHH
T ss_pred cCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC--ccHH----HHHH
Confidence 99888988743 22222222222357899999999999999999999999999999988752 4543 4455
Q ss_pred HHh-CCCEEEcCccEEEEEEeCCeE-EEEEC---CCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCC
Q 042564 252 LEG-RGINLHPRTTIKELIKSEEGV-KVITD---HGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS 324 (498)
Q Consensus 252 l~~-~Gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~ 324 (498)
+++ .||++++++.+.++..+++.+ .+.+. +|+ ++++|.|++|+|++||.+++ ++ .+.++++|+|.||+++
T Consensus 189 l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l--~~-~l~~~~~g~i~vd~~~ 265 (310)
T 1fl2_A 189 LRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWL--EG-AVERNRMGEIIIDAKC 265 (310)
T ss_dssp HHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG--TT-TSCBCTTSCBCCCTTC
T ss_pred HhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHH--hc-cccccCCCcEEcCCCC
Confidence 666 699999999999998765443 45543 353 68999999999999999874 43 3778888999999999
Q ss_pred CCCCCCeEEecccCCCC-CChHHHHHHHHHHHHHHh
Q 042564 325 RTNVPSIWAVGDVTNRM-NLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 325 ~t~~~~iya~GD~~~~~-~~~~~A~~~g~~aa~~i~ 359 (498)
+|+.|+|||+|||+..+ ..+..|..||+.+|.+|.
T Consensus 266 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 301 (310)
T 1fl2_A 266 ETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF 301 (310)
T ss_dssp BCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHH
Confidence 99999999999999864 678899999999999986
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=297.51 Aligned_cols=287 Identities=21% Similarity=0.254 Sum_probs=219.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..+||+|||||+||+++|..|++.|++|+|+| +..+||.|.....+. ..+.+.
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~gg~~~~~~~~~---------------~~~~~~-- 56 (320)
T 1trb_A 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT----------GMEKGGQLTTTTEVE---------------NWPGDP-- 56 (320)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEEC----------CSSTTGGGGGCSBCC---------------CSTTCC--
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEc----------cCCCCceEecchhhh---------------hCCCCC--
Confidence 35899999999999999999999999999999 456788875433211 001110
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeC--CEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGP--NEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~--~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
..+....+. .++...+.+.+++++.+++..++. +.+.+ ..++. .+.||+||+|||+.|..
T Consensus 57 ----~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~v-~~~~~--~~~~~~lv~AtG~~~~~ 118 (320)
T 1trb_A 57 ----NDLTGPLLM-----------ERMHEHATKFETEIIFDHINKVDLQNRPFRL-NGDNG--EYTCDALIIATGASARY 118 (320)
T ss_dssp ----SSCBHHHHH-----------HHHHHHHHHTTCEEECCCEEEEECSSSSEEE-EESSC--EEEEEEEEECCCEEECC
T ss_pred ----CCCCHHHHH-----------HHHHHHHHHCCCEEEEeeeeEEEecCCEEEE-EeCCC--EEEcCEEEECCCCCcCC
Confidence 012222222 223344556789999888777764 34555 44544 78999999999999999
Q ss_pred CCCCCCCc-----ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHh
Q 042564 180 APIPGQEL-----AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEG 254 (498)
Q Consensus 180 p~i~g~~~-----~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~ 254 (498)
|++||.+. +.+..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+. .++.+.+.+.+.+++
T Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~ 196 (320)
T 1trb_A 119 LGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVEN 196 (320)
T ss_dssp CCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC--CCHHHHHHHHHHHHT
T ss_pred CCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc--cCHHHHHHHHHhccc
Confidence 88887532 22222222223457899999999999999999999999999999987654 477888888899999
Q ss_pred CCCEEEcCccEEEEEEeCCe-EEEEECC----C--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCC---
Q 042564 255 RGINLHPRTTIKELIKSEEG-VKVITDH----G--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS--- 324 (498)
Q Consensus 255 ~Gv~i~~~~~v~~i~~~~~~-~~v~~~~----g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~--- 324 (498)
.||++++++.|.++..+++. ..+++.+ | +++++|.||+|+|++|+.+++ + .+++++ +|+|.||+++
T Consensus 197 ~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~--~-~~l~~~-~G~i~vd~~~~~~ 272 (320)
T 1trb_A 197 GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGN 272 (320)
T ss_dssp SSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGG--T-TTSCEE-TTEECCCCSSSSC
T ss_pred CCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHh--c-cccccc-CceEEECCCcccc
Confidence 99999999999999876644 3355543 4 579999999999999999874 3 467788 8999999987
Q ss_pred --CCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 325 --RTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 325 --~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
+|++|+|||+|||+.. +..+..|..+|+.||.+|.
T Consensus 273 ~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 310 (320)
T 1trb_A 273 ATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 310 (320)
T ss_dssp TTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHH
Confidence 8999999999999986 5678899999999999985
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=293.71 Aligned_cols=276 Identities=17% Similarity=0.211 Sum_probs=211.6
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
++||+|||||++|+++|..|++.|.+|+|+|+ ....+.+.... +++
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~----------~~~~~~~~~~~----------------------~~~-- 47 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDA----------GERRNRFASHS----------------------HGF-- 47 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEEC----------CCCGGGGCSCC----------------------CSS--
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeC----------CCcccccchhh----------------------cCC--
Confidence 48999999999999999999999999999994 22222211000 000
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
......++..+.. ++...+.+. +++++.+++..++ .+.+.+.+.+++ .+.||+||+|||+.|+.
T Consensus 48 ~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vviAtG~~~~~ 114 (297)
T 3fbs_A 48 LGQDGKAPGEIIA-----------EARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGR--RETAGRLILAMGVTDEL 114 (297)
T ss_dssp TTCTTCCHHHHHH-----------HHHHHHTTCTTEEEEESCEEEEEEETTEEEEEETTSC--EEEEEEEEECCCCEEEC
T ss_pred cCCCCCCHHHHHH-----------HHHHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCCC--EEEcCEEEECCCCCCCC
Confidence 0111223333322 233344454 7888888877665 346788887765 79999999999999999
Q ss_pred CCCCCCCc-----ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHh
Q 042564 180 APIPGQEL-----AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEG 254 (498)
Q Consensus 180 p~i~g~~~-----~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~ 254 (498)
|++||.+. .++..........+++++|+|+|.+|+|+|..|.+.| +|+++.+.+. .+++ .+.+.+++
T Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~---~~~~----~~~~~l~~ 186 (297)
T 3fbs_A 115 PEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV---EPDA----DQHALLAA 186 (297)
T ss_dssp CCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC---CCCH----HHHHHHHH
T ss_pred CCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC---CCCH----HHHHHHHH
Confidence 99998753 2222222223345789999999999999999999999 9999988765 2333 45677888
Q ss_pred CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeC--CCC-CeEcCCCCCCCCCCe
Q 042564 255 RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVD--QTG-AVKVDENSRTNVPSI 331 (498)
Q Consensus 255 ~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~--~~g-~i~vd~~~~t~~~~i 331 (498)
.||+++. +.|.++..++ .+++.+|+++++|.|++|+|++|+.++ +++.+++++ ++| +|.||++++|++|+|
T Consensus 187 ~gv~i~~-~~v~~i~~~~---~v~~~~g~~~~~D~vi~a~G~~p~~~~--~~~~g~~~~~~~~G~~i~vd~~~~t~~~~v 260 (297)
T 3fbs_A 187 RGVRVET-TRIREIAGHA---DVVLADGRSIALAGLFTQPKLRITVDW--IEKLGCAVEEGPMGSTIVTDPMKQTTARGI 260 (297)
T ss_dssp TTCEEEC-SCEEEEETTE---EEEETTSCEEEESEEEECCEEECCCSC--HHHHTCCEEEETTEEEECCCTTCBCSSTTE
T ss_pred CCcEEEc-ceeeeeecCC---eEEeCCCCEEEEEEEEEccCcccCchh--HHhcCCccccCCCCceEEeCCCCccCCCCE
Confidence 9999996 8999986432 688889999999999999999999986 677788776 457 899999999999999
Q ss_pred EEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 332 WAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 332 ya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
||+|||+..++.++.|..||+.+|.+|.
T Consensus 261 ya~GD~~~~~~~~~~A~~~g~~aa~~i~ 288 (297)
T 3fbs_A 261 FACGDVARPAGSVALAVGDGAMAGAAAH 288 (297)
T ss_dssp EECSGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCchHHHHHHHHhHHHHHHHHH
Confidence 9999999988999999999999999985
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=298.90 Aligned_cols=294 Identities=21% Similarity=0.218 Sum_probs=216.1
Q ss_pred ccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhc
Q 042564 18 EQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARS 97 (498)
Q Consensus 18 ~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~ 97 (498)
..+.+++||+|||||++|+++|+.|++.|++|+|+|+.. .....+||.+.....++. ++.
T Consensus 17 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~-----~~~~~~gg~~~~~~~~~~---------------~~~ 76 (338)
T 3itj_A 17 RGSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM-----ANGIAAGGQLTTTTEIEN---------------FPG 76 (338)
T ss_dssp ----CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS-----BTTBCTTCGGGGSSEECC---------------STT
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC-----CCCCCcCcccccchhhcc---------------cCC
Confidence 334456899999999999999999999999999999411 112356777654321110 000
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeC--CEEEEEeC---CCceEEEEcCeEEEc
Q 042564 98 YGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGP--NEVEVTQL---DGTKLSYSAKHILIA 172 (498)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~--~~~~v~~~---~g~~~~~~~d~liiA 172 (498)
+. ..+... .+..++...+.+.+++++.+++..++. +.+.+... ++ ..+.||+||+|
T Consensus 77 ~~------~~~~~~-----------~~~~~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~--~~~~~d~vvlA 137 (338)
T 3itj_A 77 FP------DGLTGS-----------ELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDA--EPVTTDAIILA 137 (338)
T ss_dssp CT------TCEEHH-----------HHHHHHHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSS--CCEEEEEEEEC
T ss_pred Cc------ccCCHH-----------HHHHHHHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCC--cEEEeCEEEEC
Confidence 00 001111 222334455667799999988766654 45666552 33 37899999999
Q ss_pred CCCCCCCCCCCCCCc-----ccChHHHhcc--ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHH
Q 042564 173 TGSRAQRAPIPGQEL-----AITSDEALSL--EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMR 245 (498)
Q Consensus 173 tG~~p~~p~i~g~~~-----~~~~~~~~~l--~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~ 245 (498)
||+.|..|++||.+. +......... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++ .
T Consensus 138 tG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------~ 211 (338)
T 3itj_A 138 TGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------S 211 (338)
T ss_dssp CCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS------C
T ss_pred cCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC------C
Confidence 999999999998642 2222222222 23578999999999999999999999999999999887654 2
Q ss_pred HHHHHHHHhC-CCEEEcCccEEEEEEeCCe-EEEEECC-----CeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCe
Q 042564 246 AVVARNLEGR-GINLHPRTTIKELIKSEEG-VKVITDH-----GEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318 (498)
Q Consensus 246 ~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~-~~v~~~~-----g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i 318 (498)
+.+.+.+.+. ||++++++.+.++..+++. ..+++.+ ++++++|.||+|+|++|+..++ +. ++.++++|+|
T Consensus 212 ~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~~-~l~~~~~G~i 288 (338)
T 3itj_A 212 TIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIV--AG-QVDTDEAGYI 288 (338)
T ss_dssp HHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGG--BT-TBCBCTTSCB
T ss_pred HHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHh--hC-ceEecCCCcE
Confidence 3344555554 9999999999999887654 3355544 4579999999999999999874 34 8999999999
Q ss_pred Ec-CCCCCCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 319 KV-DENSRTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 319 ~v-d~~~~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
.| |++++|+.|+|||+|||+.. +..+..|..||+.||.+|.
T Consensus 289 ~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 331 (338)
T 3itj_A 289 KTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAE 331 (338)
T ss_dssp CCCTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred EEcCcccccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHH
Confidence 95 88999999999999999985 6788999999999999985
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=297.20 Aligned_cols=289 Identities=20% Similarity=0.260 Sum_probs=214.3
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcC
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSY 98 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 98 (498)
.|+..+||+|||||++|+++|..|++.|++|+|+| +..+||.|.....+. .++.+
T Consensus 10 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~gg~~~~~~~~~---------------~~~~~ 64 (335)
T 2a87_A 10 AHHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFE----------GTSFGGALMTTTDVE---------------NYPGF 64 (335)
T ss_dssp CCCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEC----------CSSCSCGGGSCSCBC---------------CSTTC
T ss_pred ccCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCCCCCceeccchhh---------------hcCCC
Confidence 34556999999999999999999999999999999 456788875432211 00111
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeC-CEEEE-EeCCCceEEEEcCeEEEcCCCC
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGP-NEVEV-TQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~-~~~~v-~~~~g~~~~~~~d~liiAtG~~ 176 (498)
. ..+....+. .++...+.+.+++++.+++..++. +.+.| .+.++. .+.||+||+|||+.
T Consensus 65 ~------~~~~~~~~~-----------~~l~~~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g~--~~~~d~lviAtG~~ 125 (335)
T 2a87_A 65 R------NGITGPELM-----------DEMREQALRFGADLRMEDVESVSLHGPLKSVVTADGQ--THRARAVILAMGAA 125 (335)
T ss_dssp T------TCBCHHHHH-----------HHHHHHHHHTTCEEECCCEEEEECSSSSEEEEETTSC--EEEEEEEEECCCEE
T ss_pred C------CCCCHHHHH-----------HHHHHHHHHcCCEEEEeeEEEEEeCCcEEEEEeCCCC--EEEeCEEEECCCCC
Confidence 0 012222222 223344556789999888776664 33555 565654 79999999999999
Q ss_pred CCCCCCCCCCc-----ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHH
Q 042564 177 AQRAPIPGQEL-----AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARN 251 (498)
Q Consensus 177 p~~p~i~g~~~-----~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~ 251 (498)
|..|++||.+. +.+..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. .+.+. .+.
T Consensus 126 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~--~~~~~---~~~ 200 (335)
T 2a87_A 126 ARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA--SKIML---DRA 200 (335)
T ss_dssp ECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS--CTTHH---HHH
T ss_pred ccCCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc--cHHHH---HHH
Confidence 99998888542 222222222234578999999999999999999999999999999877543 22221 234
Q ss_pred HHhCCCEEEcCccEEEEEEeCCeEEEEEC---CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCC-CC
Q 042564 252 LEGRGINLHPRTTIKELIKSEEGVKVITD---HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDEN-SR 325 (498)
Q Consensus 252 l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~-~~ 325 (498)
+++.||++++++.+.++..+++...+.+. +| +++++|.||+|+|++|+.+++ + .+++++++|+|.||++ ++
T Consensus 201 ~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd~~~~~ 277 (335)
T 2a87_A 201 RNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLV--R-EAIDVDPDGYVLVQGRTTS 277 (335)
T ss_dssp HHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTT--B-TTBCBCTTSCBCCSTTSSB
T ss_pred hccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHh--h-cccccCCCccEEeCCCCCc
Confidence 56789999999999999866532233332 44 579999999999999999874 3 4788888899999996 68
Q ss_pred CCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 326 TNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 326 t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
|+.|+|||+|||+.. +..+..|..||+.+|.++.
T Consensus 278 t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~ 312 (335)
T 2a87_A 278 TSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAE 312 (335)
T ss_dssp CSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHH
Confidence 999999999999986 5778899999999999985
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=300.60 Aligned_cols=295 Identities=22% Similarity=0.244 Sum_probs=218.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|+.++||+|||||++|+++|+.|++.|++|+|||+ ...+||.|.+. .|.+.+ +
T Consensus 11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~---------~~~~gg~~~~~--~~~~~~---------------~- 63 (360)
T 3ab1_A 11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIES---------MPQLGGQLAAL--YPEKHI---------------Y- 63 (360)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCHHHHHT--CTTSEE---------------C-
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEec---------CCCCCCccccc--CCCccc---------------c-
Confidence 44569999999999999999999999999999995 34578887532 121100 0
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC---CEEEEEeCCCceEEEEcCeEEEcCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP---NEVEVTQLDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~---~~~~v~~~~g~~~~~~~d~liiAtG~ 175 (498)
.....+.++...+. ..+...+.+.+++++.+. +..++. +.+.|.+.+|. .+.||+||+|||+
T Consensus 64 -~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~~li~AtG~ 129 (360)
T 3ab1_A 64 -DVAGFPEVPAIDLV-----------ESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGN--VYRSRAVLIAAGL 129 (360)
T ss_dssp -CSTTCSSEEHHHHH-----------HHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSC--EEEEEEEEECCTT
T ss_pred -cCCCCCCCCHHHHH-----------HHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCc--EEEeeEEEEccCC
Confidence 00011112222222 223344556688887664 555542 26778777764 7999999999998
Q ss_pred ---CCCCCCCCC-CCcccC--h-HHHhccc-cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHH
Q 042564 176 ---RAQRAPIPG-QELAIT--S-DEALSLE-ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAV 247 (498)
Q Consensus 176 ---~p~~p~i~g-~~~~~~--~-~~~~~l~-~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~ 247 (498)
.|..|+++| .+.... . ..+.... ..+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.+. +.+.+.
T Consensus 130 ~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~--~~~~~~ 207 (360)
T 3ab1_A 130 GAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH--GKTAHE 207 (360)
T ss_dssp CSCCBCCCGGGCCCTTTBTTTEESSCSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC--SHHHHS
T ss_pred CcCCCCCCCCCCchhhCcCceEEEecCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC--HHHHHH
Confidence 566777777 432111 0 0011111 24689999999999999999999999999999998876542 356677
Q ss_pred HHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEE--CCC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCC
Q 042564 248 VARNLEGRGINLHPRTTIKELIKSEEGV-KVIT--DHG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDE 322 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~--~~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~ 322 (498)
+.+.+++.||++++++.|.++..+++.+ .+.+ .+| +.+++|.||+|+|++|+.++ ++..+++++ +|+|.||+
T Consensus 208 l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~-~g~i~vd~ 284 (360)
T 3ab1_A 208 VERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGP--LARWDLELY-ENALVVDS 284 (360)
T ss_dssp SHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGG--GGGSSCCEE-TTEEECCT
T ss_pred HHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHH--HHhhccccc-cCeeeecC
Confidence 8888889999999999999998875542 4444 377 57999999999999999987 567788887 68999999
Q ss_pred CCCCCCCCeEEecccCC---CCCChHHHHHHHHHHHHHHhC
Q 042564 323 NSRTNVPSIWAVGDVTN---RMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 323 ~~~t~~~~iya~GD~~~---~~~~~~~A~~~g~~aa~~i~~ 360 (498)
+++|++|+|||+|||+. .+.++..|..||+++|++|.+
T Consensus 285 ~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 325 (360)
T 3ab1_A 285 HMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLS 325 (360)
T ss_dssp TSBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHh
Confidence 99999999999999985 367889999999999999864
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=316.82 Aligned_cols=291 Identities=19% Similarity=0.237 Sum_probs=212.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+.+|||||||+||+++|.+|++.+++|+|||+...+ .+..++|. . .
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~-------------~~~PlL~~------------------v---a 87 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF-------------LFTPLLPS------------------A---P 87 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE-------------ECGGGGGG------------------T---T
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc-------------ccccchhH------------------H---h
Confidence 468999999999999999999999999999942111 11101110 0 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHH--HHhCCcEEEEeEEEEEeCCEEEEEeC------------------CCceE
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRL--LSNAGVKLYEGEGKIVGPNEVEVTQL------------------DGTKL 162 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gv~~~~~~~~~i~~~~~~v~~~------------------~g~~~ 162 (498)
.+ .++...+. ..+... ..+.+++++.+++..+|+....|... .++..
T Consensus 88 ~G--~l~~~~i~-----------~p~~~~~~~~~~~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (502)
T 4g6h_A 88 VG--TVDEKSII-----------EPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPA 154 (502)
T ss_dssp TT--SSCGGGGE-----------EEHHHHHTTCSSCEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCE
T ss_pred hc--cccHHHhh-----------hhHHHHHHhhcCCeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCce
Confidence 00 00000000 000111 12357999999999988765444321 12245
Q ss_pred EEEcCeEEEcCCCCCCCCCCCCCCc----ccChHHHhccc--------------------cCCCeEEEEcCCHHHHHHHH
Q 042564 163 SYSAKHILIATGSRAQRAPIPGQEL----AITSDEALSLE--------------------ELPKRAVVLGGGYIAVEFAS 218 (498)
Q Consensus 163 ~~~~d~liiAtG~~p~~p~i~g~~~----~~~~~~~~~l~--------------------~~~~~v~ViG~G~~g~e~a~ 218 (498)
++.||+||||||+.|+.+++||.+. +.+.++...+. ....+++|||+|++|+|+|.
T Consensus 155 ~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~ 234 (502)
T 4g6h_A 155 EIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAG 234 (502)
T ss_dssp EEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHH
T ss_pred EEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHH
Confidence 8999999999999999999999732 23444433211 01247999999999999999
Q ss_pred HHHHC--------------CCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe-
Q 042564 219 IWRGM--------------GSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE- 283 (498)
Q Consensus 219 ~l~~~--------------g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~- 283 (498)
.|.++ ..+|+++++.+++++.+++++++.+.+.|++.||++++++.|.+++.+.........+|+
T Consensus 235 ~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~ 314 (502)
T 4g6h_A 235 ELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKI 314 (502)
T ss_dssp HHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCE
T ss_pred HHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCccc
Confidence 88764 368999999999999999999999999999999999999999999533222334455663
Q ss_pred ---EEEcCEEEEecCCCcCCCCCC-cccCCceeCCCCCeEcCCCCCC-CCCCeEEecccCCC--CCChHHHHHHHHHHHH
Q 042564 284 ---EIVADVVLFATGRAPNTKRLN-LKAVGVEVDQTGAVKVDENSRT-NVPSIWAVGDVTNR--MNLTPVALMEGTCFAK 356 (498)
Q Consensus 284 ---~i~~D~vi~a~G~~p~~~~l~-l~~~gi~~~~~g~i~vd~~~~t-~~~~iya~GD~~~~--~~~~~~A~~~g~~aa~ 356 (498)
++++|.||||+|.+|+....+ ....+...+.+|+|.||++||| ++|||||+|||+.. ++++..|.+||+++|+
T Consensus 315 ~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ 394 (502)
T 4g6h_A 315 TEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAK 394 (502)
T ss_dssp EEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHH
T ss_pred ceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHH
Confidence 699999999999999843211 2345666778899999999998 89999999999864 7789999999999999
Q ss_pred HHhC
Q 042564 357 TVFG 360 (498)
Q Consensus 357 ~i~~ 360 (498)
||..
T Consensus 395 ni~~ 398 (502)
T 4g6h_A 395 NFDK 398 (502)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9853
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=297.07 Aligned_cols=286 Identities=19% Similarity=0.292 Sum_probs=214.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
++||+|||||+||+++|+.|++.|++|+|+|+ ...+||.|.+ +.|...+ +..
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~---------~~~~gG~~~~--~~~~~~~-----------------~~~ 58 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIES---------LPQLGGQLSA--LYPEKYI-----------------YDV 58 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCHHHHH--HCTTSEE-----------------CCS
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEc---------CCCCCceehh--cCCCceE-----------------ecc
Confidence 48999999999999999999999999999995 4557777632 2221000 000
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--C-EEEEEeCCCceEEEEcCeEEEcCCC---
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--N-EVEVTQLDGTKLSYSAKHILIATGS--- 175 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~-~~~v~~~~g~~~~~~~d~liiAtG~--- 175 (498)
...+..... .+..++...+.+.+++++.++ +..++. + .+.|.+.+| ++.||+||+|||+
T Consensus 59 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g---~~~~d~vVlAtG~~~~ 124 (332)
T 3lzw_A 59 AGFPKIRAQ-----------ELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEE---THYSKTVIITAGNGAF 124 (332)
T ss_dssp TTCSSEEHH-----------HHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSE---EEEEEEEEECCTTSCC
T ss_pred CCCCCCCHH-----------HHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCC---EEEeCEEEECCCCCcC
Confidence 011111222 223334455666789988654 555543 2 567777665 4899999999999
Q ss_pred CCCCCCCCCCCcc----cChHHHhcccc-CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHH
Q 042564 176 RAQRAPIPGQELA----ITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVAR 250 (498)
Q Consensus 176 ~p~~p~i~g~~~~----~~~~~~~~l~~-~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~ 250 (498)
.|..|++||.+.. +.. .+..... .+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.+ .+.. .+
T Consensus 125 ~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~-~~~~-----~~ 197 (332)
T 3lzw_A 125 KPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA-HEHS-----VE 197 (332)
T ss_dssp EECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS-CHHH-----HH
T ss_pred CCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc-cHHH-----HH
Confidence 8999999987541 111 2222222 368999999999999999999999999999999887543 3322 34
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCeEEEEECC-----CeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEGVKVITDH-----GEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSR 325 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~-----g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~ 325 (498)
.+++.||++++++.+.++..+++...+++.+ ++++++|.||+|+|++|+.++ ++..++++ ++|+|.||++++
T Consensus 198 ~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~--~~~~~~~~-~~g~i~vd~~~~ 274 (332)
T 3lzw_A 198 NLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGP--IKNWGLDI-EKNSIVVKSTME 274 (332)
T ss_dssp HHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGG--GGGSSCCE-ETTEEECCTTSB
T ss_pred HHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchH--HhhcCccc-cCCeEEeCCCCc
Confidence 4788999999999999998766554555544 457999999999999999987 67788888 678999999999
Q ss_pred CCCCCeEEecccC---CCCCChHHHHHHHHHHHHHHhC
Q 042564 326 TNVPSIWAVGDVT---NRMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 326 t~~~~iya~GD~~---~~~~~~~~A~~~g~~aa~~i~~ 360 (498)
|+.|+|||+|||+ +.+.++..|..||+++|++|..
T Consensus 275 t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 312 (332)
T 3lzw_A 275 TNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKA 312 (332)
T ss_dssp CSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred eecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHH
Confidence 9999999999998 4578899999999999999863
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=287.38 Aligned_cols=289 Identities=22% Similarity=0.241 Sum_probs=211.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
++||+|||||++|+++|+.|++.|++|+|+|+ ..+.....||.|.....+. ..+.+.
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~-----~~~~~~~~gg~~~~~~~~~---------------~~~~~~--- 64 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEG-----WMANDIAPGGQLTTTTDVE---------------NFPGFP--- 64 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECC-----SSBTTBCTTCGGGGCSEEC---------------CSTTCT---
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEec-----cCccccCCCceeeeccccc---------------cCCCCc---
Confidence 58999999999999999999999999999993 0111145667664322111 001110
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeC--CEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGP--NEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~--~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
..++...+ ...+...+.+.+++++.+++..++. +.+.|.+ ++. .++||+||+|||+.|..|
T Consensus 65 ---~~~~~~~~-----------~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~-~~~--~~~~~~vv~A~G~~~~~~ 127 (333)
T 1vdc_A 65 ---EGILGVEL-----------TDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DSK--AILADAVILAIGAVAKRL 127 (333)
T ss_dssp ---TCEEHHHH-----------HHHHHHHHHHTTCEEECCCCCEEECSSSSEEEEC-SSE--EEEEEEEEECCCEEECCC
T ss_pred ---cCCCHHHH-----------HHHHHHHHHHCCCEEEEeEEEEEEEcCCEEEEEE-CCc--EEEcCEEEECCCCCcCCC
Confidence 01122222 2223344556789998887666653 4566766 543 799999999999999999
Q ss_pred CCCCCCc---------ccChHHHhccc--cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHH
Q 042564 181 PIPGQEL---------AITSDEALSLE--ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA 249 (498)
Q Consensus 181 ~i~g~~~---------~~~~~~~~~l~--~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~ 249 (498)
++||.+. +.+........ ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. .+.+ ..
T Consensus 128 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~--~~~~---~~ 202 (333)
T 1vdc_A 128 SFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--SKIM---QQ 202 (333)
T ss_dssp CCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHH---HH
T ss_pred CCCCccccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc--cHHH---HH
Confidence 8888643 11122222222 4578999999999999999999999999999999876532 3322 22
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCC--e-EEEEEC---CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcC
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEE--G-VKVITD---HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD 321 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~--~-~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd 321 (498)
+.+++.||++++++.+.++..+++ . ..+.+. +| +++++|.||+|+|++|+.+++ + .++.++++|+|.||
T Consensus 203 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd 279 (333)
T 1vdc_A 203 RALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFL--D-GGVELDSDGYVVTK 279 (333)
T ss_dssp HHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG--T-TSSCBCTTSCBCCC
T ss_pred HHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHh--h-ccccccCCCCEEec
Confidence 445678999999999999987663 3 234443 44 579999999999999999874 3 46888888999999
Q ss_pred CC-CCCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 322 EN-SRTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 322 ~~-~~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
++ ++|+.|+|||+|||+.. +..+..|..||+.||.+|.
T Consensus 280 ~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 319 (333)
T 1vdc_A 280 PGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAE 319 (333)
T ss_dssp TTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHH
Confidence 97 68999999999999986 4788899999999999985
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=300.63 Aligned_cols=284 Identities=23% Similarity=0.327 Sum_probs=217.2
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
...|||+||||||||+++|..|++.|.+|+|+| . ..||+|....+++. +
T Consensus 210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie----------~-~~GG~~~~~~~~~~------------------~-- 258 (521)
T 1hyu_A 210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMG----------E-RFGGQVLDTVDIEN------------------Y-- 258 (521)
T ss_dssp SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----------S-STTGGGTTCSCBCC------------------B--
T ss_pred cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEE----------C-CCCCcccccccccc------------------c--
Confidence 346899999999999999999999999999999 3 36888875444331 0
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEe-EEEEEeCC-----EEEEEeCCCceEEEEcCeEEEcCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG-EGKIVGPN-----EVEVTQLDGTKLSYSAKHILIATG 174 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~~~~i~~~-----~~~v~~~~g~~~~~~~d~liiAtG 174 (498)
...+...... +...+...+.+.+++++.+ .+..++.. .+.|.+.+|. .++||+||+|||
T Consensus 259 --~~~~~~~~~~-----------l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~--~~~~d~vVlAtG 323 (521)
T 1hyu_A 259 --ISVPKTEGQK-----------LAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGA--VLKARSIIIATG 323 (521)
T ss_dssp --TTBSSBCHHH-----------HHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSC--EEEEEEEEECCC
T ss_pred --CCCCCCCHHH-----------HHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCC--EEEcCEEEECCC
Confidence 0001112222 2233445566789999998 57777642 6778777765 799999999999
Q ss_pred CCCCCCCCCCCCcc-----cChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHH
Q 042564 175 SRAQRAPIPGQELA-----ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA 249 (498)
Q Consensus 175 ~~p~~p~i~g~~~~-----~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~ 249 (498)
+.|+.|++||.+.. ............+++|+|||+|++|+|+|..|++.+.+|+++++.+.+.. + +.+.
T Consensus 324 ~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~--~----~~l~ 397 (521)
T 1hyu_A 324 AKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--D----QVLQ 397 (521)
T ss_dssp EEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS--C----HHHH
T ss_pred CCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc--C----HHHH
Confidence 99999989987532 11111111122468999999999999999999999999999999887653 3 3355
Q ss_pred HHHHh-CCCEEEcCccEEEEEEeCCeE-EEEEC---CCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCC
Q 042564 250 RNLEG-RGINLHPRTTIKELIKSEEGV-KVITD---HGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDE 322 (498)
Q Consensus 250 ~~l~~-~Gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~ 322 (498)
+.+++ .||++++++.+.++..+++.+ .+.+. +|+ ++++|.|++++|+.||++++ ++ .+.++++|+|.||+
T Consensus 398 ~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l--~~-~l~~~~~G~I~Vd~ 474 (521)
T 1hyu_A 398 DKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWL--EG-ALERNRMGEIIIDA 474 (521)
T ss_dssp HHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGG--TT-TSCBCTTSCBCCCT
T ss_pred HHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHH--hh-hhccCCCCcEEeCC
Confidence 66766 699999999999998765443 45543 353 68999999999999999874 43 47888889999999
Q ss_pred CCCCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 323 NSRTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 323 ~~~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
+++|++|+|||+|||+.. ++.+..|+.+|+.||.+++
T Consensus 475 ~~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 512 (521)
T 1hyu_A 475 KCETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF 512 (521)
T ss_dssp TCBCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHH
Confidence 999999999999999986 4678999999999999985
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=294.62 Aligned_cols=313 Identities=17% Similarity=0.196 Sum_probs=216.6
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC-cEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA-KVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
++||+|||||++|+++|..|++.|. +|+|||+ ..+||+|.++.+... +....+ ....+++.
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~----------~~~Gg~~~~~~~~~~---~~~~~~-----~~~~~g~~ 65 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEK----------GTVGHSFKHWPKSTR---TITPSF-----TSNGFGMP 65 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECS----------SSTTHHHHTSCTTCB---CSSCCC-----CCGGGTCC
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEec----------CCCCCccccCccccc---ccCcch-----hcccCCch
Confidence 5899999999999999999999999 9999993 338888865432110 000000 00111210
Q ss_pred cccccccCHHHHHHHHHH--HHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTD--EILRLNGIYKRLLSNAGVKLYEGE-GKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
.......++...+..... ....+..++...+++.+++++.++ +..++.. .+.|.+.++ .+.||+||+|||+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~~~d~vVlAtG~~ 142 (369)
T 3d1c_A 66 DMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE---TYHADYIFVATGDY 142 (369)
T ss_dssp CTTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC---CEEEEEEEECCCST
T ss_pred hhhhccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC---EEEeCEEEECCCCC
Confidence 000001111111100000 001233444555667899988875 5556543 577777655 58899999999987
Q ss_pred CCCCCCCCCCcccChHHHhccccC-CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-------CCCHHHHHHH
Q 042564 177 AQRAPIPGQELAITSDEALSLEEL-PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR-------GFDDEMRAVV 248 (498)
Q Consensus 177 p~~p~i~g~~~~~~~~~~~~l~~~-~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~-------~~~~~~~~~l 248 (498)
+. |.+|+ ...++..++...... .++|+|||+|.+|+|+|..|.+.|.+|+++++.+.+++ .+++...+.+
T Consensus 143 ~~-p~ip~-~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l 220 (369)
T 3d1c_A 143 NF-PKKPF-KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRL 220 (369)
T ss_dssp TS-BCCCS-SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHH
T ss_pred Cc-cCCCC-CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHH
Confidence 65 55665 444444444444433 46999999999999999999999999999999887663 2557778889
Q ss_pred HHHHHhCC-CEEEcCccEEEEEEeCCeEEEEECCCeEEE-cCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCC-CC
Q 042564 249 ARNLEGRG-INLHPRTTIKELIKSEEGVKVITDHGEEIV-ADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDEN-SR 325 (498)
Q Consensus 249 ~~~l~~~G-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~-~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~-~~ 325 (498)
.+.+++.| |++++++.|.++..+++...+++.+|+.+. +|.||+|+|++|+.+++ .+.+++ +++|++.||++ ++
T Consensus 221 ~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~--~~~~~~-~~~g~i~v~~~~~~ 297 (369)
T 3d1c_A 221 GNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPI--VQQLFV-TTNQDIKLTTHDES 297 (369)
T ss_dssp HHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHH--HHHHSC-CTTSCCCBCTTSBB
T ss_pred HHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchh--hhhhcc-CCCCCEEechhhcc
Confidence 99999997 999999999999877777778888887665 69999999999999763 344555 67889999985 67
Q ss_pred CCCCCeEEecccCCCC----CChHHHHHHHHHHHHHHhCC
Q 042564 326 TNVPSIWAVGDVTNRM----NLTPVALMEGTCFAKTVFGG 361 (498)
Q Consensus 326 t~~~~iya~GD~~~~~----~~~~~A~~~g~~aa~~i~~~ 361 (498)
|++|+|||+|||+..+ .....+.+||+++|++|.+.
T Consensus 298 t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~ 337 (369)
T 3d1c_A 298 TRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQR 337 (369)
T ss_dssp SSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHH
T ss_pred cCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcc
Confidence 8999999999998752 23456788999999999864
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-34 Score=281.14 Aligned_cols=300 Identities=17% Similarity=0.173 Sum_probs=205.6
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+|||||++|+++|..|++.|.+|+|+|+ ...+||.|.+ +.|...+... .....+..+....
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~---------~~~~gg~~~~--~~~~~~~~~~----~~~~~~~~~~~~~ 67 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDA---------EASPGGAWQH--AWHSLHLFSP----AGWSSIPGWPMPA 67 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECC---------SSSSSGGGGG--SCTTCBCSSC----GGGSCCSSSCCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC---------CCCCCCcccC--CCCCcEecCc----hhhhhCCCCCCCC
Confidence 48999999999999999999999999999995 4467888764 2221110000 0001111111110
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEE-EEeCCCceEEEEcCeEEEcCC--CC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVE-VTQLDGTKLSYSAKHILIATG--SR 176 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~-v~~~~g~~~~~~~d~liiAtG--~~ 176 (498)
........ ..+..++...+++.+++++.++ +..+ +.+.+. |.+.++ .++||+||+||| +.
T Consensus 68 ~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g---~~~~d~vV~AtG~~~~ 133 (357)
T 4a9w_A 68 SQGPYPAR-----------AEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR---QWLARAVISATGTWGE 133 (357)
T ss_dssp CSSSSCBH-----------HHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC---EEEEEEEEECCCSGGG
T ss_pred CccCCCCH-----------HHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC---EEEeCEEEECCCCCCC
Confidence 00001111 1223334455666788888764 4544 456777 877665 799999999999 57
Q ss_pred CCCCCCCCCCc----ccChHHHhccc-cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC-CCCCCC--CCHHHHHHH
Q 042564 177 AQRAPIPGQEL----AITSDEALSLE-ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK-ELPLRG--FDDEMRAVV 248 (498)
Q Consensus 177 p~~p~i~g~~~----~~~~~~~~~l~-~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~-~~~l~~--~~~~~~~~l 248 (498)
|..|++||.+. .+...++.... ..+++++|||+|.+|+|+|..|.+.+ +|+++.+. +.+++. ....+.+.+
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~ 212 (357)
T 4a9w_A 134 AYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERA 212 (357)
T ss_dssp BCCCCCTTGGGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC-
T ss_pred CCCCCCCCccccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHH
Confidence 88899998753 22222222222 24689999999999999999999998 69999987 444443 234444333
Q ss_pred HHHHH----------------------------hCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 249 ARNLE----------------------------GRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 249 ~~~l~----------------------------~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+. +.|+ +..+..+.++.. + .+.+.+|+++++|.||+|+|++|++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~ 287 (357)
T 4a9w_A 213 TERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSP--T--GMQWADGTERAFDAVIWCTGFRPAL 287 (357)
T ss_dssp ---------------------CBCCCHHHHHHHHTTC-CCEECCCSEEET--T--EEECTTSCEEECSEEEECCCBCCCC
T ss_pred HHHHhccccccCCCcccccccCcccChhHHHHHhcCc-eEEecCcceEeC--C--eeEECCCCEecCCEEEECCCcCCCC
Confidence 33332 3444 445556666643 2 3778899999999999999999999
Q ss_pred CCCCcccCCceeCCCCCeEcCCC--CCCCCCCeEEec--ccCC-CCCChHHHHHHHHHHHHHHhC
Q 042564 301 KRLNLKAVGVEVDQTGAVKVDEN--SRTNVPSIWAVG--DVTN-RMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 301 ~~l~l~~~gi~~~~~g~i~vd~~--~~t~~~~iya~G--D~~~-~~~~~~~A~~~g~~aa~~i~~ 360 (498)
++ +++.++. +++|+|.||++ ++|+.|||||+| ||+. .+.....|..||+.+|++|..
T Consensus 288 ~~--l~~~gl~-~~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~ 349 (357)
T 4a9w_A 288 SH--LKGLDLV-TPQGQVEVDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTA 349 (357)
T ss_dssp GG--GTTTTCB-CTTSCBCBCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHH
T ss_pred cc--cCccccc-CCCCCccccCCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHH
Confidence 87 5778888 88899999999 899999999999 6665 466778899999999999863
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=286.83 Aligned_cols=282 Identities=17% Similarity=0.207 Sum_probs=206.8
Q ss_pred CccEEEECCChhHHHHHHHHHh---CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN---FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
++||+|||||+||+++|..|++ .|.+|+|||+ .+... ..|....+.. +
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~------~~~~~----------~~~~~~~~~~-------------g 54 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISA------NDYFQ----------FVPSNPWVGV-------------G 54 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECS------SSEEE----------CGGGHHHHHH-------------T
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeC------CCCCc----------ccCCcccccc-------------C
Confidence 4699999999999999999999 8999999994 21110 0121110000 0
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
..+. +.+...+...+++.+++++.+.+..+++....|.+.+|+ ++.||+||+|||++|+.
T Consensus 55 -------~~~~-----------~~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~--~i~~d~lviAtG~~~~~ 114 (437)
T 3sx6_A 55 -------WKER-----------DDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGN--TVHYDYLMIATGPKLAF 114 (437)
T ss_dssp -------SSCH-----------HHHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTSC--EEECSEEEECCCCEECG
T ss_pred -------ccCH-----------HHHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCCC--EEECCEEEECCCCCcCc
Confidence 0000 111122334556689999988899998876677777765 79999999999999999
Q ss_pred CCCCCCCc-------ccChHHHhcccc------CCCeEEEEcCCHH----H--HHHH----HHHHHCCCc-----EEEEe
Q 042564 180 APIPGQEL-------AITSDEALSLEE------LPKRAVVLGGGYI----A--VEFA----SIWRGMGST-----VDLLF 231 (498)
Q Consensus 180 p~i~g~~~-------~~~~~~~~~l~~------~~~~v~ViG~G~~----g--~e~a----~~l~~~g~~-----V~lv~ 231 (498)
|.+||.+. +.+.++...+.+ ..++++|||+|+. | +|+| ..+++.|.+ |++++
T Consensus 115 ~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~ 194 (437)
T 3sx6_A 115 ENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFIT 194 (437)
T ss_dssp GGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEE
T ss_pred ccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEc
Confidence 99998752 455665544321 1345688888654 3 7777 666777875 99999
Q ss_pred eCCCCC----CCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE--CC-----CeEEEcCEEEEecCCCcCC
Q 042564 232 RKELPL----RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT--DH-----GEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 232 ~~~~~l----~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~--~~-----g~~i~~D~vi~a~G~~p~~ 300 (498)
+.+.+. +.+ ++..+.+.+.+++.||++++++.|.++.. +.+.+.. .+ ++++++|.+++++|+.|+.
T Consensus 195 ~~~~~~~~~l~~~-~~~~~~~~~~l~~~gI~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~ 271 (437)
T 3sx6_A 195 SEPYIGHLGIQGV-GDSKGILTKGLKEEGIEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVP 271 (437)
T ss_dssp SSSSTTCTTTTCC-TTHHHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCH
T ss_pred CCccccccccCcc-hHHHHHHHHHHHHCCCEEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCcCch
Confidence 988763 223 34788899999999999999999999953 4444432 23 5679999999999988876
Q ss_pred CCCCcccCCceeCCCCCeEcCCCCCC-CCCCeEEecccCCC------------CCChHHHHHHHHHHHHHHh
Q 042564 301 KRLNLKAVGVEVDQTGAVKVDENSRT-NVPSIWAVGDVTNR------------MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 301 ~~l~l~~~gi~~~~~g~i~vd~~~~t-~~~~iya~GD~~~~------------~~~~~~A~~~g~~aa~~i~ 359 (498)
.. .+..++ .+++|+|.||+++|| ++|||||+|||+.. ++.+..|..||+++|+||.
T Consensus 272 ~~--~~~~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~ 340 (437)
T 3sx6_A 272 AV--AGVEGL-CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIK 340 (437)
T ss_dssp HH--HTSTTT-BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred hh--hccccc-cCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 53 233566 678899999999999 99999999999873 4578899999999999986
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-33 Score=283.11 Aligned_cols=305 Identities=16% Similarity=0.118 Sum_probs=205.6
Q ss_pred ccEEEECCChhHHHHHHHHHh---CCCc---EEEEccCCCCCCCCcCCCccccccc---cCchhhHHHHHHhHhhHHH-h
Q 042564 24 FDLFVIGAGSGGVRAARFSAN---FGAK---VGICELPFHPISSEVIGGVGGTCVI---RGCVPKKILVYGASFGGEL-E 93 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~---~g~~---V~lvek~~~~~~~~~~~~~GG~~~~---~g~~p~~~l~~~~~~~~~~-~ 93 (498)
+||+|||||+||+++|..|++ .|.+ |+|||+ ...+||+|.+ .||.|....... ..+..+ .
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~---------~~~~GG~w~~~~~~g~~~~g~~~~~-~~y~~l~~ 72 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEK---------QADWGGQWNYTWRTGLDENGEPVHS-SMYRYLWS 72 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECS---------SSSSCGGGSCCSCCSBCTTSSBCCC-CCCTTCBC
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEc---------CCCCCCEeecCCCCCccccCCCCcC-ccccchhh
Confidence 699999999999999999999 9999 999994 4568999976 355442110000 000000 0
Q ss_pred hhhcCCcccccccccCHHHHHH---HHHHHHHHHhHHHHHHHHhCCcE--EEEeE-EEEEe--CC--EEEEEeCC---Cc
Q 042564 94 DARSYGWEVHEKIDFDWKKLLQ---KKTDEILRLNGIYKRLLSNAGVK--LYEGE-GKIVG--PN--EVEVTQLD---GT 160 (498)
Q Consensus 94 ~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~gv~--~~~~~-~~~i~--~~--~~~v~~~~---g~ 160 (498)
+.+..... ...+.+..-.. ........+..++...+++.+++ +..++ +..++ .+ .+.|...+ |+
T Consensus 73 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~ 149 (464)
T 2xve_A 73 NGPKECLE---FADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDT 149 (464)
T ss_dssp SSCGGGTC---BTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTE
T ss_pred cCChhhcc---cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCc
Confidence 00000000 00111111000 00000112223334444555665 55443 44443 33 56665533 43
Q ss_pred eEEEEcCeEEEcCC--CCCCCCCCCCCCc----ccChHHHhccc-cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 161 KLSYSAKHILIATG--SRAQRAPIPGQEL----AITSDEALSLE-ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 161 ~~~~~~d~liiAtG--~~p~~p~i~g~~~----~~~~~~~~~l~-~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
..++.||+||+||| +.|+.|++||.+. ++++.++.... ..+++|+|||+|.+|+|+|..|.+.|.+|+++++.
T Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~ 229 (464)
T 2xve_A 150 IYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYR 229 (464)
T ss_dssp EEEEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECS
T ss_pred eEEEEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEEC
Confidence 35789999999999 8999999999753 34455444433 25799999999999999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeC
Q 042564 234 ELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVD 313 (498)
Q Consensus 234 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~ 313 (498)
+.+++..- ..||+++ ..|.++. ++ .|++.+|+++++|.||+|||++|+++++. +..++.++
T Consensus 230 ~~~~~~~~------------~~~V~~~--~~V~~i~--~~--~V~~~dG~~i~~D~Vi~atG~~p~~~~l~-~~~gl~~~ 290 (464)
T 2xve_A 230 TAPMGYKW------------PENWDER--PNLVRVD--TE--NAYFADGSSEKVDAIILCTGYIHHFPFLN-DDLRLVTN 290 (464)
T ss_dssp SCCCCCCC------------CTTEEEC--SCEEEEC--SS--EEEETTSCEEECSEEEECCCBCCCCTTBC-TTTCCCCC
T ss_pred CCCCCCCC------------CCceEEc--CCeEEEe--CC--EEEECCCCEEeCCEEEECCCCCCCCCCcC-cccccccC
Confidence 87665311 2478887 6788884 23 47788999999999999999999999854 34678877
Q ss_pred CCCCeEcCCC---CCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 314 QTGAVKVDEN---SRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 314 ~~g~i~vd~~---~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
++|++ ++.+ ++|+.|+|||+||+... ..++.|..||+++|+++.|..
T Consensus 291 ~~~~v-~~~~~~~~~t~~p~i~aiGd~~~~-~~~~~a~~qa~~~a~~l~G~~ 340 (464)
T 2xve_A 291 NRLWP-LNLYKGVVWEDNPKFFYIGMQDQW-YSFNMFDAQAWYARDVIMGRL 340 (464)
T ss_dssp SSSCC-SSEETTTEESSSTTEEECSCSCCS-SCHHHHHHHHHHHHHHHTTSS
T ss_pred CCccc-ccccceEecCCCCCEEEEeCcccc-cchHHHHHHHHHHHHHHcCCC
Confidence 66555 4433 57899999999999874 578899999999999999753
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=289.81 Aligned_cols=276 Identities=25% Similarity=0.360 Sum_probs=199.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..+||+||||||||+++|..|++.|++|+|+|+ ...+||.+.+ .+| .+
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~---------~~~~GG~l~~--gip------------------~~--- 168 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDR---------YDRMGGLLVY--GIP------------------GF--- 168 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECS---------SSSCSTHHHH--TSC------------------TT---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec---------cCCCCCeeee--cCC------------------Cc---
Confidence 457999999999999999999999999999994 3456665311 011 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p 180 (498)
.+. ..+. ......+++.|++++.++.. . . .+..+++ .+.||+||+|||+. |+.+
T Consensus 169 -----~~~-~~~~-----------~~~~~~l~~~gv~~~~~~~v--~-~--~v~~~~~---~~~~d~vvlAtG~~~~~~~ 223 (456)
T 2vdc_G 169 -----KLE-KSVV-----------ERRVKLLADAGVIYHPNFEV--G-R--DASLPEL---RRKHVAVLVATGVYKARDI 223 (456)
T ss_dssp -----TSC-HHHH-----------HHHHHHHHHTTCEEETTCCB--T-T--TBCHHHH---HSSCSEEEECCCCCEECCT
T ss_pred -----cCC-HHHH-----------HHHHHHHHHCCcEEEeCCEe--c-c--EEEhhHh---HhhCCEEEEecCCCCCCCC
Confidence 000 1111 11234456679998876532 1 1 1212121 35799999999986 7788
Q ss_pred CCCCCCc--ccChHHHhc------------------cccCCCeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCCC-CC
Q 042564 181 PIPGQEL--AITSDEALS------------------LEELPKRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKELP-LR 238 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~------------------l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~~-l~ 238 (498)
++||.+. +++..+++. ....+++|+|||+|.+|+|+|..+.+.|.+ |++++|.+.. ++
T Consensus 224 ~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p 303 (456)
T 2vdc_G 224 KAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMP 303 (456)
T ss_dssp TCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCS
T ss_pred CCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCC
Confidence 8888642 333322211 113468999999999999999999999984 9999998865 55
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEE---E----C---------CC--eEEEcCEEEEecCCCc
Q 042564 239 GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVI---T----D---------HG--EEIVADVVLFATGRAP 298 (498)
Q Consensus 239 ~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~---~----~---------~g--~~i~~D~vi~a~G~~p 298 (498)
..+.+ .+.+++.||++++++.+.++..++.. +.+. + . +| .++++|.||+|+|+.|
T Consensus 304 ~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p 378 (456)
T 2vdc_G 304 GSQRE-----VAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEP 378 (456)
T ss_dssp SCHHH-----HHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEEC
T ss_pred CCHHH-----HHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCC
Confidence 55443 24567789999999999888753211 1111 1 1 23 3689999999999999
Q ss_pred CCCCCCcccCCceeCCCCCeEcCCC-CCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 299 NTKRLNLKAVGVEVDQTGAVKVDEN-SRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 299 ~~~~l~l~~~gi~~~~~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
+...+.++..+++++++|+|.||++ ++|+.|+|||+|||+..+.++..|+.||+.||++|.
T Consensus 379 ~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~ 440 (456)
T 2vdc_G 379 EDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIH 440 (456)
T ss_dssp CCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHH
T ss_pred CcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCchHHHHHHHHHHHHHHHHH
Confidence 8762115778899999999999997 999999999999999988999999999999999985
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=316.38 Aligned_cols=277 Identities=23% Similarity=0.301 Sum_probs=203.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC-cEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA-KVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+||+||||||||++||..|++.|+ +|+|+|+ ...+||.+. .++| .|+.
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~---------~~~~GG~~~--~~ip------------------~~~~- 236 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEK---------QEYVGGLST--SEIP------------------QFRL- 236 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEES---------SSSCSTHHH--HTSC------------------TTTS-
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeC---------CCCCCcccc--ccCC------------------cccC-
Confidence 5799999999999999999999999 7999994 345777642 2222 1111
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC-CCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS-RAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~-~p~~p 180 (498)
. .... .+....+++.||+++.++... .+.+ +..++ ..+.||+||||||+ .|+.+
T Consensus 237 -------~-~~~~-----------~~~~~~~~~~gv~~~~~~~v~--~~~v--~~~~~--~~~~~d~vvlAtGa~~p~~l 291 (1025)
T 1gte_A 237 -------P-YDVV-----------NFEIELMKDLGVKIICGKSLS--ENEI--TLNTL--KEEGYKAAFIGIGLPEPKTD 291 (1025)
T ss_dssp -------C-HHHH-----------HHHHHHHHTTTCEEEESCCBS--TTSB--CHHHH--HHTTCCEEEECCCCCEECCC
T ss_pred -------C-HHHH-----------HHHHHHHHHCCcEEEcccEec--cceE--Ehhhc--CccCCCEEEEecCCCCCCCC
Confidence 0 1111 112345567899999876432 1222 22222 24789999999998 58766
Q ss_pred CC-CCC---CcccChHHHhc----------------cccCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCC-CCCC
Q 042564 181 PI-PGQ---ELAITSDEALS----------------LEELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKE-LPLR 238 (498)
Q Consensus 181 ~i-~g~---~~~~~~~~~~~----------------l~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~-~~l~ 238 (498)
++ +|. ..+++..+++. +...+++|+|||||++|+|+|..+.++|. +|+++++.+ ..++
T Consensus 292 ~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~ 371 (1025)
T 1gte_A 292 DIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR 371 (1025)
T ss_dssp GGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC
T ss_pred CCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCC
Confidence 54 354 33566555543 12346799999999999999999999997 899999987 4556
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEEC------CC---------eEEEcCEEEEecCCCcCCCC
Q 042564 239 GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVITD------HG---------EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 239 ~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~------~g---------~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+++++ +.+++.||++++++.+.++..+++.+ .+++. +| .++++|.||+|+|++|+...
T Consensus 372 ~~~~e~-----~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~ 446 (1025)
T 1gte_A 372 AVPEEV-----ELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPK 446 (1025)
T ss_dssp SCHHHH-----HHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHH
T ss_pred CCHHHH-----HHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchh
Confidence 566554 35677899999999999997655442 23331 22 36899999999999875433
Q ss_pred CCccc-CCceeCCCCCeEcCC-CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhC
Q 042564 303 LNLKA-VGVEVDQTGAVKVDE-NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 303 l~l~~-~gi~~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 360 (498)
+ +.+ .|++++++|+|.||+ +++|+.|+|||+|||+..+.++..|+.||+.||++|.+
T Consensus 447 l-~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~~ 505 (1025)
T 1gte_A 447 V-KEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHK 505 (1025)
T ss_dssp H-HHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHHH
T ss_pred h-hhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 2 333 589999899999997 89999999999999999888999999999999999973
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=276.55 Aligned_cols=281 Identities=20% Similarity=0.247 Sum_probs=208.6
Q ss_pred ccEEEECCChhHHHHHHHHHh---CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 24 FDLFVIGAGSGGVRAARFSAN---FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
+||+|||||++|+++|..|++ .|.+|+|||+ .+ .++.. .+.|. ...+.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~------~~---~~~~~----~~~~~----------------~~~~~ 52 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINK------SR---FSYFR----PALPH----------------VAIGV 52 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEES------SS---EEEEC----CSSCC----------------CCSSC
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeC------CC---Cceec----cchhh----------------cccCC
Confidence 489999999999999999999 8999999994 21 11111 01110 00000
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCC--ceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDG--TKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g--~~~~~~~d~liiAtG~~p~ 178 (498)
... +++...+...+.+.+++++.+++..++.+...|.+.++ +..++.||+||+|||+.|.
T Consensus 53 ~~~------------------~~~~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~ 114 (409)
T 3h8l_A 53 RDV------------------DELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA 114 (409)
T ss_dssp CCC------------------CCEEEEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEEC
T ss_pred cCH------------------HHHHHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcC
Confidence 000 00111123445567999999988888776434444333 3356999999999999999
Q ss_pred CCCCCCCCc----ccChHHHhccc----cCCCeEEEEcCCH-------------------------HHHHHH----HHHH
Q 042564 179 RAPIPGQEL----AITSDEALSLE----ELPKRAVVLGGGY-------------------------IAVEFA----SIWR 221 (498)
Q Consensus 179 ~p~i~g~~~----~~~~~~~~~l~----~~~~~v~ViG~G~-------------------------~g~e~a----~~l~ 221 (498)
.|++||.+. +.+.++...+. ...++++|||+|+ .++|+| ..+.
T Consensus 115 ~~~ipG~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~ 194 (409)
T 3h8l_A 115 TELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFK 194 (409)
T ss_dssp GGGSBTHHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHH
T ss_pred ccCCCChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHH
Confidence 998998742 34444443322 2336677999992 466766 5566
Q ss_pred HCCC----cEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 222 GMGS----TVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 222 ~~g~----~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
+.|. +|+++++.+ +++.+++++.+.+.+.+++.||++++++.|++++.+ + +++++|+++++|.+|+++|+.
T Consensus 195 ~~g~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~--~--v~~~~g~~~~~D~vi~a~G~~ 269 (409)
T 3h8l_A 195 KKGMLDKVHVTVFSPGE-YLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREH--E--IVDEKGNTIPADITILLPPYT 269 (409)
T ss_dssp TTTCTTTEEEEEECSSS-SSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSS--E--EEETTSCEEECSEEEEECCEE
T ss_pred HcCCCCCeEEEEEeCCc-cccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCC--e--EEECCCCEEeeeEEEECCCCC
Confidence 7774 899999988 777889999999999999999999999999999543 2 778899999999999999999
Q ss_pred cCCCCCCcccC--CceeCCCCCeEcCCCCCC-CCCCeEEecccCC--CCCChHHHHHHHHHHHHHHhC
Q 042564 298 PNTKRLNLKAV--GVEVDQTGAVKVDENSRT-NVPSIWAVGDVTN--RMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 298 p~~~~l~l~~~--gi~~~~~g~i~vd~~~~t-~~~~iya~GD~~~--~~~~~~~A~~~g~~aa~~i~~ 360 (498)
|+.. +++. ++ .+++|+|.||+++|| +.|||||+|||+. .++++..|..||+++|+||.+
T Consensus 270 ~~~~---l~~~~~~l-~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~ 333 (409)
T 3h8l_A 270 GNPA---LKNSTPDL-VDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLAN 333 (409)
T ss_dssp CCHH---HHTSCGGG-SCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ccHH---HHhccccC-cCCCCCEEeCcccccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 9853 4555 44 367889999999999 9999999999996 377889999999999999864
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=283.48 Aligned_cols=282 Identities=19% Similarity=0.239 Sum_probs=205.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCC--CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g--~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
++|||||||+||+++|.+|++.+ .+|+|||+ ......| |.++.++ .+. ..
T Consensus 3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~----------~~~~~~~----p~~~~v~-~g~-------------~~ 54 (401)
T 3vrd_B 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEP----------NETYYTC----YMSNEVI-GGD-------------RE 54 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS----------CSSEECS----TTHHHHH-HTS-------------SC
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeC----------CCCCCCc----cCHHHHh-cCC-------------CC
Confidence 57999999999999999998854 69999993 2211222 1111110 000 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
.. ....++ +.+.+.+++++.+++..+|+....+.+.+|. ++.||+||+|||+++..++
T Consensus 55 ~~-~~~~~~-------------------~~~~~~gv~~i~~~v~~id~~~~~v~~~~g~--~i~yd~LviAtG~~~~~~~ 112 (401)
T 3vrd_B 55 LA-SLRVGY-------------------DGLRAHGIQVVHDSALGIDPDKKLVKTAGGA--EFAYDRCVVAPGIDLLYDK 112 (401)
T ss_dssp GG-GGEECS-------------------HHHHHTTCEEECSCEEEEETTTTEEEETTSC--EEECSEEEECCCEEECGGG
T ss_pred HH-HHhhCH-------------------HHHHHCCCEEEEeEEEEEEccCcEEEecccc--eeecceeeeccCCccccCC
Confidence 00 000111 1123468999999999999988888888876 8999999999999999999
Q ss_pred CCCCCc---------ccChHHHhcc----ccC-CCeEEEEcCCH-----------HHHHHHHHHHHCC--CcEEEEeeCC
Q 042564 182 IPGQEL---------AITSDEALSL----EEL-PKRAVVLGGGY-----------IAVEFASIWRGMG--STVDLLFRKE 234 (498)
Q Consensus 182 i~g~~~---------~~~~~~~~~l----~~~-~~~v~ViG~G~-----------~g~e~a~~l~~~g--~~V~lv~~~~ 234 (498)
+||.+. ..+.++...+ ... ....+|+++|. .+.+++..+++.+ .+|+++++.+
T Consensus 113 i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~ 192 (401)
T 3vrd_B 113 IEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQ 192 (401)
T ss_dssp SBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred ccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccc
Confidence 988642 1233333322 111 23334443321 4567777777655 6899998887
Q ss_pred CCCC--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCcee
Q 042564 235 LPLR--GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEV 312 (498)
Q Consensus 235 ~~l~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~ 312 (498)
.+.. .+++.+.+.+.+.+++.||++++++.+..++.+.+...+.+++|+++++|.+++++|.+|+. + ++++++ .
T Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~~-~--~~~~gl-~ 268 (401)
T 3vrd_B 193 TFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQRAGK-I--AQSASL-T 268 (401)
T ss_dssp SCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCEEECH-H--HHHTTC-C
T ss_pred cccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCcCCch-h--Hhhccc-c
Confidence 6543 25667777777778899999999999999988877778999999999999999999999984 3 577788 4
Q ss_pred CCCCCeEcCCC-CC-CCCCCeEEecccCCC---CCChHHHHHHHHHHHHHHh
Q 042564 313 DQTGAVKVDEN-SR-TNVPSIWAVGDVTNR---MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 313 ~~~g~i~vd~~-~~-t~~~~iya~GD~~~~---~~~~~~A~~~g~~aa~~i~ 359 (498)
+++|+|.||++ +| |++|||||+|||+.. +++++.|.+||+++|+||.
T Consensus 269 ~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~ 320 (401)
T 3vrd_B 269 NDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVV 320 (401)
T ss_dssp CTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHH
Confidence 77899999986 65 799999999999864 5788999999999999985
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=271.32 Aligned_cols=298 Identities=14% Similarity=0.061 Sum_probs=198.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCC--cEEEEccCCCCCCCCcCCCccccccccCchh------hHHH-------HH--
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGA--KVGICELPFHPISSEVIGGVGGTCVIRGCVP------KKIL-------VY-- 84 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p------~~~l-------~~-- 84 (498)
..+||+|||||++|+++|..|++.|. +|+|+|+ ...+||.|.+.+|.+ .... ..
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~---------~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~ 75 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFER---------RGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPA 75 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECS---------SSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSS
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEec---------CCCCCCeecCCCCCCccccccccccccccccccccc
Confidence 35899999999999999999999999 9999995 446788888776522 1000 00
Q ss_pred -----HhHhh--------HHHhhhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--e
Q 042564 85 -----GASFG--------GELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--G 148 (498)
Q Consensus 85 -----~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~ 148 (498)
.+..+ .....+..+.+............+. .++.....+.+..+..++ +..+ +
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~l~~~~~~~~~~i~~~t~V~~v~~~ 144 (447)
T 2gv8_A 76 ALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQ-----------EYQRIYAQPLLPFIKLATDVLDIEKK 144 (447)
T ss_dssp SCCBCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHH-----------HHHHHHHGGGGGGEECSEEEEEEEEE
T ss_pred ccCCccCchhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhhCeEEeCCEEEEEEeC
Confidence 00000 0000011111110000111122222 223333333344454443 4444 3
Q ss_pred CCEEEEEeCC---Cc-eEEEEcCeEEEcCCC--CCCCCCCCCCCc--------ccChHHHhcccc-CCCeEEEEcCCHHH
Q 042564 149 PNEVEVTQLD---GT-KLSYSAKHILIATGS--RAQRAPIPGQEL--------AITSDEALSLEE-LPKRAVVLGGGYIA 213 (498)
Q Consensus 149 ~~~~~v~~~~---g~-~~~~~~d~liiAtG~--~p~~p~i~g~~~--------~~~~~~~~~l~~-~~~~v~ViG~G~~g 213 (498)
.+.+.|+..+ |+ ..++.||+||+|||. .|+.|++||.+. ++++.++..... .+++|+|||+|.+|
T Consensus 145 ~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg 224 (447)
T 2gv8_A 145 DGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSA 224 (447)
T ss_dssp TTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHH
T ss_pred CCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCH
Confidence 4556666543 53 347899999999997 889999998642 344444443332 57899999999999
Q ss_pred HHHHHHHHHCCCc-EEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeE-EEcCEEE
Q 042564 214 VEFASIWRGMGST-VDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEE-IVADVVL 291 (498)
Q Consensus 214 ~e~a~~l~~~g~~-V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~vi 291 (498)
+|+|..|.+.+.+ |++++|.+.+ ++..||.+ +..|.++..++. .|++.+|+. +++|.||
T Consensus 225 ~e~A~~l~~~~~~~V~l~~r~~~~---------------l~~~~i~~--~~~v~~~~~~~~--~v~~~dG~~~~~~D~vi 285 (447)
T 2gv8_A 225 NDLVRHLTPVAKHPIYQSLLGGGD---------------IQNESLQQ--VPEITKFDPTTR--EIYLKGGKVLSNIDRVI 285 (447)
T ss_dssp HHHHHHHTTTSCSSEEEECTTCCS---------------CBCSSEEE--ECCEEEEETTTT--EEEETTTEEECCCSEEE
T ss_pred HHHHHHHHHHhCCcEEEEeCCCCc---------------CCCCCeEE--ecCeEEEecCCC--EEEECCCCEeccCCEEE
Confidence 9999999999999 9999998754 34557764 467888854333 577889986 7899999
Q ss_pred EecCCCcCCCC-----CCcccCCceeCCCCCeEcCCCCC---CCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCC
Q 042564 292 FATGRAPNTKR-----LNLKAVGVEVDQTGAVKVDENSR---TNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGG 361 (498)
Q Consensus 292 ~a~G~~p~~~~-----l~l~~~gi~~~~~g~i~vd~~~~---t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 361 (498)
+|+|++|++++ +.-...++.. ++.+.++.+.+ ++.|+||++||+... .+++.|..||+++|+++.|.
T Consensus 286 ~atG~~~~~~~l~~~~l~~~~~~i~~--~~~~~~~~~~~v~~~~~p~l~~~G~~~~~-~~~~~a~~qa~~~a~~~~g~ 360 (447)
T 2gv8_A 286 YCTGYLYSVPFPSLAKLKSPETKLID--DGSHVHNVYQHIFYIPDPTLAFVGLALHV-VPFPTSQAQAAFLARVWSGR 360 (447)
T ss_dssp ECCCBCCCCCCHHHHSCCSTTTCCCS--SSSSCCSEETTTEETTCTTEEESSCCBSS-CHHHHHHHHHHHHHHHHTTS
T ss_pred ECCCCCcCCCCCcccccccccCceec--CCCcccccccccccCCCCcEEEEeccccc-cCchHHHHHHHHHHHHHcCC
Confidence 99999999988 5311123333 34566666655 699999999999875 47889999999999999975
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-32 Score=274.62 Aligned_cols=281 Identities=20% Similarity=0.215 Sum_probs=195.7
Q ss_pred ccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
++|||||||+||+++|.+|++. +.+|+|||+ .+... +.|.-..+... . ..
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~------~~~~~----------~~p~l~~v~~g-~-----------~~ 54 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISD------RPYFG----------FTPAFPHLAMG-W-----------RK 54 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECS------SSEEE----------CGGGHHHHHHT-C-----------SC
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcC------CCCCc----------cCccHHHHhcC-C-----------CC
Confidence 4799999999999999999984 479999994 21110 11211100000 0 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
. ..... .+..++++.+++++.+++..+|++..+|.+++|+ +++||+||||||+++. ++
T Consensus 55 ~-~~i~~------------------~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g~--~i~YD~LViAtG~~~~-~~ 112 (430)
T 3hyw_A 55 F-EDISV------------------PLAPLLPKFNIEFINEKAESIDPDANTVTTQSGK--KIEYDYLVIATGPKLV-FG 112 (430)
T ss_dssp G-GGSEE------------------ESTTTGGGGTEEEECSCEEEEETTTTEEEETTCC--EEECSEEEECCCCEEE-CC
T ss_pred H-HHhhh------------------cHHHHHHHCCcEEEEeEEEEEECCCCEEEECCCC--EEECCEEEEeCCCCcc-CC
Confidence 0 00000 1123455679999999999999988888888876 8999999999999864 46
Q ss_pred CCCCC----cccChHHHhcccc------CCCeEEEEcCCH------HHHHH----HHHHHHCC----CcEEEEeeCCCCC
Q 042564 182 IPGQE----LAITSDEALSLEE------LPKRAVVLGGGY------IAVEF----ASIWRGMG----STVDLLFRKELPL 237 (498)
Q Consensus 182 i~g~~----~~~~~~~~~~l~~------~~~~v~ViG~G~------~g~e~----a~~l~~~g----~~V~lv~~~~~~l 237 (498)
+||.+ .+.+.+++.++.+ ..+.++|+|++. .+.|+ +..+.+.+ .+|++++..+.+.
T Consensus 113 i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~ 192 (430)
T 3hyw_A 113 AEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLG 192 (430)
T ss_dssp SBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTT
T ss_pred ccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhh
Confidence 78863 2455565544321 123455555542 23343 34455554 4788888766542
Q ss_pred C---CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC--eEEEcCEEEEecCCCcCCCCCCcccC--Cc
Q 042564 238 R---GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG--EEIVADVVLFATGRAPNTKRLNLKAV--GV 310 (498)
Q Consensus 238 ~---~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~l~~~--gi 310 (498)
+ ...+...+.+.+.++++||++++++.|++++ ++.+.+...+| +++++|.+++++|.+|+.. +..+ .+
T Consensus 193 ~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~--~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~~~---~~~~~~~l 267 (430)
T 3hyw_A 193 HFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIE--PDKVIYEDLNGNTHEVPAKFTMFMPSFQGPEV---VASAGDKV 267 (430)
T ss_dssp CTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEEC--SSEEEEECTTSCEEEEECSEEEEECEEECCHH---HHTTCTTT
T ss_pred hccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEe--CCceEEEeeCCCceEeecceEEEeccCCCchH---HHhccccc
Confidence 2 3556778889999999999999999999984 45555555444 4799999999999999853 2333 34
Q ss_pred eeCCCCCeEcCCCCC-CCCCCeEEecccCCC------------CCChHHHHHHHHHHHHHHh
Q 042564 311 EVDQTGAVKVDENSR-TNVPSIWAVGDVTNR------------MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 311 ~~~~~g~i~vd~~~~-t~~~~iya~GD~~~~------------~~~~~~A~~~g~~aa~~i~ 359 (498)
..+.+|+|.||++|| |++|||||+|||+.. ++.+..|.+||+++|+||.
T Consensus 268 ~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~ 329 (430)
T 3hyw_A 268 ANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIV 329 (430)
T ss_dssp BCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHH
Confidence 445667899999999 899999999999863 4667899999999999986
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-32 Score=276.53 Aligned_cols=276 Identities=18% Similarity=0.244 Sum_probs=199.2
Q ss_pred CccEEEECCChhHHHHHHHHHh-C------CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhh
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN-F------GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDA 95 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~-~------g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~ 95 (498)
.+||+||||||||+++|..|++ . |.+|+|||+ ...+||.| ..||.|.+.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~---------~~~~gg~~-~~gv~p~~~-------------- 58 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEM---------LPTPWGLV-RSGVAPDHP-------------- 58 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEES---------SSSCSTHH-HHTSCTTCT--------------
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEec---------CCCCCCcc-ccccCCCCC--------------
Confidence 4799999999999999999999 7 999999994 23467777 345655210
Q ss_pred hcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC
Q 042564 96 RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~ 175 (498)
.. ..+...+...+.+.+++++.+.. ++ .. |...++ .+.||+||+|||+
T Consensus 59 -------------~~-----------~~~~~~~~~~~~~~~v~~~~~v~--v~-~~--v~~~~~---~~~~d~lViAtG~ 106 (456)
T 1lqt_A 59 -------------KI-----------KSISKQFEKTAEDPRFRFFGNVV--VG-EH--VQPGEL---SERYDAVIYAVGA 106 (456)
T ss_dssp -------------GG-----------GGGHHHHHHHHTSTTEEEEESCC--BT-TT--BCHHHH---HHHSSEEEECCCC
T ss_pred -------------CH-----------HHHHHHHHHHHhcCCCEEEeeEE--EC-CE--EEECCC---eEeCCEEEEeeCC
Confidence 00 01122234455667899887632 22 11 222232 4789999999999
Q ss_pred C-CCCCCCCCCC--cccChHHHh-----------cccc-CCCeEEEEcCCHHHHHHHHHHHHC-----------------
Q 042564 176 R-AQRAPIPGQE--LAITSDEAL-----------SLEE-LPKRAVVLGGGYIAVEFASIWRGM----------------- 223 (498)
Q Consensus 176 ~-p~~p~i~g~~--~~~~~~~~~-----------~l~~-~~~~v~ViG~G~~g~e~a~~l~~~----------------- 223 (498)
. |+.|++||.+ .+++..++. .+.. .+++|+|||+|++|+|+|..|.+.
T Consensus 107 ~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l 186 (456)
T 1lqt_A 107 QSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESL 186 (456)
T ss_dssp CEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHH
Confidence 7 7888899875 245555542 2222 368999999999999999999874
Q ss_pred ---CC-cEEEEeeCCCCCCCCCH-------------------HH------------------HHHHHHHHHh------CC
Q 042564 224 ---GS-TVDLLFRKELPLRGFDD-------------------EM------------------RAVVARNLEG------RG 256 (498)
Q Consensus 224 ---g~-~V~lv~~~~~~l~~~~~-------------------~~------------------~~~l~~~l~~------~G 256 (498)
+. +|+++.|.+.+...|.+ ++ .+.+.+.+++ +|
T Consensus 187 ~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 266 (456)
T 1lqt_A 187 RPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRR 266 (456)
T ss_dssp TTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEE
T ss_pred HHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCce
Confidence 54 89999998765443321 11 3445555555 79
Q ss_pred CEEEcCccEEEEEEeCCeEEEEEC----------------CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCe
Q 042564 257 INLHPRTTIKELIKSEEGVKVITD----------------HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~----------------~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i 318 (498)
|++++++.+.+|..++....+.+. +| ++++||.||+|+|++|+. + .++.++++|+|
T Consensus 267 v~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l-----~gl~~d~~g~i 340 (456)
T 1lqt_A 267 MVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T-----PGLPFDDQSGT 340 (456)
T ss_dssp EEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C-----TTSCCBTTTTB
T ss_pred EEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC-C-----CCCcccCCCCe
Confidence 999999999999765332123322 34 468999999999999998 2 36778888899
Q ss_pred EcCCCCC-CCCCCeEEecccCCCCC-ChHHHHHHHHHHHHHHhC
Q 042564 319 KVDENSR-TNVPSIWAVGDVTNRMN-LTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 319 ~vd~~~~-t~~~~iya~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 360 (498)
.+|+++| |+.|+|||+|||+..+. .+..|..+|..+|.+|++
T Consensus 341 ~vn~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~ 384 (456)
T 1lqt_A 341 IPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK 384 (456)
T ss_dssp CCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred eECCCCcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999 89999999999986554 566899999999999864
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=265.36 Aligned_cols=313 Identities=16% Similarity=0.190 Sum_probs=196.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCC-----CcEEEEccCCCCCCCCcCCCccccccccCc-hhhHHHHHHhHhhHHHhhh
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFG-----AKVGICELPFHPISSEVIGGVGGTCVIRGC-VPKKILVYGASFGGELEDA 95 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g-----~~V~lvek~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~ 95 (498)
..|||+|||||++|+++|..|++.| .+|+|||+ .+..+...|.+. .+| +... + +.
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~------~~~~g~~~~~~~-~~~~~~~~-------~---~~-- 89 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDK------QGDYRWHGNTLV-SQSELQIS-------F---LK-- 89 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEES------CSSCCSSGGGCC-SSCBCSSC-------T---TS--
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEec------CCCCCCcCCCCC-CCCcCCcc-------h---hh--
Confidence 4589999999999999999999999 99999995 221111111111 011 0000 0 00
Q ss_pred hcCCcccccccccCHHHHHHHHH------------HHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC----CE---EEEE
Q 042564 96 RSYGWEVHEKIDFDWKKLLQKKT------------DEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP----NE---VEVT 155 (498)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~----~~---~~v~ 155 (498)
.+.........+.+..++.... .....+..++.....+.++++..++ +..++. .. +.|.
T Consensus 90 -~l~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~ 168 (463)
T 3s5w_A 90 -DLVSLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVI 168 (463)
T ss_dssp -SSSTTTCTTCTTSHHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEE
T ss_pred -ccccccCCCCCCChhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEE
Confidence 0000000000111111111000 0012333445555566678888876 555543 22 3555
Q ss_pred eCC--CceEEEEcCeEEEcCCCCCCCCC-CCCCC---cccChHHHhc-ccc------CCCeEEEEcCCHHHHHHHHHHHH
Q 042564 156 QLD--GTKLSYSAKHILIATGSRAQRAP-IPGQE---LAITSDEALS-LEE------LPKRAVVLGGGYIAVEFASIWRG 222 (498)
Q Consensus 156 ~~~--g~~~~~~~d~liiAtG~~p~~p~-i~g~~---~~~~~~~~~~-l~~------~~~~v~ViG~G~~g~e~a~~l~~ 222 (498)
+.+ |+..++.||+||+|||+.|.+|+ +++.. .+++..++.. +.. .+++|+|||+|.+|+|+|..|.+
T Consensus 169 ~~~g~g~~~~~~~d~lVlAtG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~ 248 (463)
T 3s5w_A 169 SRNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLND 248 (463)
T ss_dssp EEETTSCEEEEEESEEEECCCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHH
T ss_pred EecCCCceEEEEeCEEEECCCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHh
Confidence 443 33347999999999999998886 33321 2333333222 222 46899999999999999999999
Q ss_pred C--CCcEEEEeeCCCCCCCC--------------------CHHHHHHHHHHHHh--------------------------
Q 042564 223 M--GSTVDLLFRKELPLRGF--------------------DDEMRAVVARNLEG-------------------------- 254 (498)
Q Consensus 223 ~--g~~V~lv~~~~~~l~~~--------------------~~~~~~~l~~~l~~-------------------------- 254 (498)
. +.+|+++.|.+.+++.. +++....+.+.+..
T Consensus 249 ~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 328 (463)
T 3s5w_A 249 SYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGI 328 (463)
T ss_dssp HCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCC
Confidence 8 89999999998775521 22222223332222
Q ss_pred CCCEEEcCccEEEEEEeCCeEEEEEC---CCe--EEEcCEEEEecCCCcC--CCCCCcccCCceeCCCCCeEcCCCCCCC
Q 042564 255 RGINLHPRTTIKELIKSEEGVKVITD---HGE--EIVADVVLFATGRAPN--TKRLNLKAVGVEVDQTGAVKVDENSRTN 327 (498)
Q Consensus 255 ~Gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~--~~~l~l~~~gi~~~~~g~i~vd~~~~t~ 327 (498)
.||++++++.|+++..+++++.+++. +|+ ++++|.||+|+|++|+ .++ +......+ |++.||+++++.
T Consensus 329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~--l~~l~~~~---g~i~v~~~~~~~ 403 (463)
T 3s5w_A 329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQL--LEPLAEYL---GDHEIGRDYRLQ 403 (463)
T ss_dssp CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTT--TGGGGGGB---C--CCCTTSBCC
T ss_pred CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccch--hHHHHHHh---CCcccCcccccc
Confidence 59999999999999988887777775 665 4899999999999999 454 34433332 789999999874
Q ss_pred -----CCCeEEecccCCC-----CCChHHHHHHHHHHHHHHh
Q 042564 328 -----VPSIWAVGDVTNR-----MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 328 -----~~~iya~GD~~~~-----~~~~~~A~~~g~~aa~~i~ 359 (498)
.|+|||+|||... +.+...|.+++++++..+-
T Consensus 404 ~~~~~~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~ 445 (463)
T 3s5w_A 404 TDERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQ 445 (463)
T ss_dssp BCTTBCSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHh
Confidence 5679999999752 5677789999998877653
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-31 Score=289.25 Aligned_cols=279 Identities=17% Similarity=0.191 Sum_probs=200.7
Q ss_pred ccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhc
Q 042564 18 EQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARS 97 (498)
Q Consensus 18 ~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~ 97 (498)
..+...|||+||||||||++||..|++.|++|+|||+ ...+||+|.+ | |+.
T Consensus 123 ~~~~~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~---------~~~~GG~~~~--~-~k~----------------- 173 (965)
T 2gag_A 123 DHVHVHTDVLVVGAGPAGLAAAREASRSGARVMLLDE---------RAEAGGTLLD--T-AGE----------------- 173 (965)
T ss_dssp EEEEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSSGGGGG--S-SCC-----------------
T ss_pred cccccCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeC---------CCCCCceecc--C-Ccc-----------------
Confidence 3344568999999999999999999999999999994 3467899873 3 210
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeE-EEEEeCCEE-E-EE---------eC----CCc
Q 042564 98 YGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGE-GKIVGPNEV-E-VT---------QL----DGT 160 (498)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~-~~~i~~~~~-~-v~---------~~----~g~ 160 (498)
.+..... .++. ..+...+.+ .+++++.++ +..++.... . +. .. ++.
T Consensus 174 ---~i~~~~~---~~~~-----------~~~~~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~ 236 (965)
T 2gag_A 174 ---QIDGMDS---SAWI-----------EQVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRER 236 (965)
T ss_dssp ---EETTEEH---HHHH-----------HHHHHHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEE
T ss_pred ---ccCCCCH---HHHH-----------HHHHHHHhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCc
Confidence 0000011 1111 111122333 488888775 444544321 1 11 00 122
Q ss_pred eEEEEcCeEEEcCCCCCCCCCCCCCCc--ccChHHH---hc-cccC-CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 161 KLSYSAKHILIATGSRAQRAPIPGQEL--AITSDEA---LS-LEEL-PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 161 ~~~~~~d~liiAtG~~p~~p~i~g~~~--~~~~~~~---~~-l~~~-~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
...+.||+||||||+.|+.|++||.+. +++..++ .. .... .++++|||+|++|+|+|..|.+.|.+|+++++.
T Consensus 237 ~~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~ 316 (965)
T 2gag_A 237 IWHIRAKQVVLATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDAR 316 (965)
T ss_dssp EEEEEEEEEEECCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESC
T ss_pred eEEEECCEEEECCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 247899999999999999999998753 4554333 22 2223 389999999999999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe-CCe-EEEEECC-------C--eEEEcCEEEEecCCCcCCCC
Q 042564 234 ELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKS-EEG-VKVITDH-------G--EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 234 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~-~~v~~~~-------g--~~i~~D~vi~a~G~~p~~~~ 302 (498)
+.+++ . .+.+++.||++++++.+.++..+ ++. ..|++.+ | +++++|.|++++|++||+++
T Consensus 317 ~~~~~----~-----~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l 387 (965)
T 2gag_A 317 SSISA----A-----AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHL 387 (965)
T ss_dssp SSCCH----H-----HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHH
T ss_pred Cccch----h-----HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHH
Confidence 87542 2 46678899999999999999873 332 3454443 4 57999999999999999986
Q ss_pred CCcccCCceeCCCCCeEcCCCCC-----CCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhC
Q 042564 303 LNLKAVGVEVDQTGAVKVDENSR-----TNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 303 l~l~~~gi~~~~~g~i~vd~~~~-----t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 360 (498)
+ +. ..|.|.+|++++ |++|+|||+|||++.+.+. .|..||+++|.+|.+
T Consensus 388 ~--~~------~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l~-~A~~~G~~aA~~i~~ 441 (965)
T 2gag_A 388 H--SQ------RQGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDTA-SALSTGAATGAAAAT 441 (965)
T ss_dssp H--HH------TTCCEEEETTTTEEEECSCCTTEEECGGGGTCCSHH-HHHHHHHHHHHHHHH
T ss_pred H--Hh------CCCcEEEcCcccccccCCCCCCEEEEEecCCchhHH-HHHHHHHHHHHHHHH
Confidence 3 22 246789998887 8999999999999877665 899999999999864
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=271.28 Aligned_cols=276 Identities=20% Similarity=0.241 Sum_probs=197.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCC--CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
.+||+||||||||+++|..|++.| .+|+|||+ ...+||. .+.+|.|.+.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~---------~~~~gg~-~~~g~~p~~~------------------- 56 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEK---------QLVPFGL-VRFGVAPDHP------------------- 56 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECS---------SSSSCTH-HHHTSCTTCG-------------------
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeC---------CCcCCce-eecccCCCCc-------------------
Confidence 479999999999999999999988 99999994 2234443 4455555210
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QR 179 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~ 179 (498)
.. ..+...+...+++.+++++.+... . .. |...+ ..+.||+||+|||+.| +.
T Consensus 57 --------~~-----------~~~~~~~~~~~~~~gv~~~~~~~v--~-~~--V~~~~---~~~~~d~lVlAtGs~~~~~ 109 (460)
T 1cjc_A 57 --------EV-----------KNVINTFTQTARSDRCAFYGNVEV--G-RD--VTVQE---LQDAYHAVVLSYGAEDHQA 109 (460)
T ss_dssp --------GG-----------GGHHHHHHHHHTSTTEEEEBSCCB--T-TT--BCHHH---HHHHSSEEEECCCCCEECC
T ss_pred --------cH-----------HHHHHHHHHHHHhCCcEEEeeeEE--e-eE--EEecc---ceEEcCEEEEecCcCCCCC
Confidence 00 011222345566778988876422 1 11 22222 1468999999999995 78
Q ss_pred CCCCCCC--cccChHHHhc----------cc-c-CCCeEEEEcCCHHHHHHHHHHH--------------------HCCC
Q 042564 180 APIPGQE--LAITSDEALS----------LE-E-LPKRAVVLGGGYIAVEFASIWR--------------------GMGS 225 (498)
Q Consensus 180 p~i~g~~--~~~~~~~~~~----------l~-~-~~~~v~ViG~G~~g~e~a~~l~--------------------~~g~ 225 (498)
|++||.+ .+++..++.. +. . .+++++|||+|++|+|+|..|. +.+.
T Consensus 110 ~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~ 189 (460)
T 1cjc_A 110 LDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRV 189 (460)
T ss_dssp CCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCC
T ss_pred CCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCC
Confidence 8899874 3555555421 11 2 3689999999999999999998 5677
Q ss_pred -cEEEEeeCCCC--------------CCC-------------------CCHH---HHHHHHHHHHh--------------
Q 042564 226 -TVDLLFRKELP--------------LRG-------------------FDDE---MRAVVARNLEG-------------- 254 (498)
Q Consensus 226 -~V~lv~~~~~~--------------l~~-------------------~~~~---~~~~l~~~l~~-------------- 254 (498)
+|+++.|.+.+ ++. +++. +.+.+.+.+++
T Consensus 190 ~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 269 (460)
T 1cjc_A 190 KTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASAS 269 (460)
T ss_dssp CEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCS
T ss_pred cEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCC
Confidence 79999998754 221 0110 33444455555
Q ss_pred CCCEEEcCccEEEEEEeC-C-e-EEEEEC---------------CC--eEEEcCEEEEecCCCcCCCCCCcccCCc-eeC
Q 042564 255 RGINLHPRTTIKELIKSE-E-G-VKVITD---------------HG--EEIVADVVLFATGRAPNTKRLNLKAVGV-EVD 313 (498)
Q Consensus 255 ~Gv~i~~~~~v~~i~~~~-~-~-~~v~~~---------------~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi-~~~ 313 (498)
.||++++++.+.+|..++ + . ..|.+. +| ++++||.||+|+|++|+. + .|+ +++
T Consensus 270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l-----~gl~~~d 343 (460)
T 1cjc_A 270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I-----DPSVPFD 343 (460)
T ss_dssp EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C-----CTTSCCB
T ss_pred ceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C-----CCCcccc
Confidence 899999999999998763 2 2 223322 34 479999999999999997 2 467 788
Q ss_pred CCCCeEcCCCCCCC-CCCeEEecccCCCCC-ChHHHHHHHHHHHHHHhC
Q 042564 314 QTGAVKVDENSRTN-VPSIWAVGDVTNRMN-LTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 314 ~~g~i~vd~~~~t~-~~~iya~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 360 (498)
++|+|.||+++||+ +|+|||+|||+..+. .+..|..+|+.+|.+|++
T Consensus 344 ~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~ 392 (460)
T 1cjc_A 344 PKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQ 392 (460)
T ss_dssp TTTTBCCEETTEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCeeECCCCcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHH
Confidence 88899999999998 799999999997554 567899999999999864
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=288.21 Aligned_cols=274 Identities=20% Similarity=0.295 Sum_probs=198.2
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
...+||+||||||||++||..|++.|++|+|||+ ...+||+|.+..++|.+
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~---------~~~~GG~~~~~~~~pg~-------------------- 437 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDT---------AEKIGGHLNQVAALPGL-------------------- 437 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS---------SSSTTTTHHHHTTSTTC--------------------
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeC---------CCCcCCeeeecccCCCh--------------------
Confidence 3458999999999999999999999999999994 34578888766655521
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC----
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR---- 176 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~---- 176 (498)
.+|..+..+....++.+. .....++++..+ . .+...++ ..+.||+||+|||+.
T Consensus 438 -------~~~~~~~~~~~~~i~~~~-----~~~~~~v~i~~~-------~--~v~~~~~--~~~~~d~vviAtG~~~~~~ 494 (729)
T 1o94_A 438 -------GEWSYHRDYRETQITKLL-----KKNKESQLALGQ-------K--PMTADDV--LQYGADKVIIATGARWNTD 494 (729)
T ss_dssp -------GGGHHHHHHHHHHHHHHH-----HHSTTCEEECSC-------C--CCCHHHH--HTSCCSEEEECCCEEECSS
T ss_pred -------HHHHHHHHHHHHHHHHhh-----cccCCceEEEeC-------e--EEehhhc--cccCCCEEEEcCCCCcccc
Confidence 122333333322222210 011124444322 1 2222222 257899999999998
Q ss_pred ----CCCCCCCCCC----cccChHHHhcccc-CCCeEEEEc--CCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC--CCHH
Q 042564 177 ----AQRAPIPGQE----LAITSDEALSLEE-LPKRAVVLG--GGYIAVEFASIWRGMGSTVDLLFRKELPLRG--FDDE 243 (498)
Q Consensus 177 ----p~~p~i~g~~----~~~~~~~~~~l~~-~~~~v~ViG--~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~--~~~~ 243 (498)
|..|++||.+ .+++..+++.... ..++|+||| +|.+|+|+|..|.+.|.+|+++++.+ +++. ++..
T Consensus 495 ~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~ 573 (729)
T 1o94_A 495 GTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE 573 (729)
T ss_dssp CCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC
T ss_pred cccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc
Confidence 5677888876 4678877766433 357999999 99999999999999999999999988 5442 2222
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE--CCC-eE------------------EEcCEEEEecCCCcCCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT--DHG-EE------------------IVADVVLFATGRAPNTKR 302 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~--~~g-~~------------------i~~D~vi~a~G~~p~~~~ 302 (498)
...+.+.+++.||++++++.+.+|.. +++.+.. .++ +. +++|.||+|+|++|+.++
T Consensus 574 -~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l 650 (729)
T 1o94_A 574 -YPNMMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTL 650 (729)
T ss_dssp -HHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHH
T ss_pred -HHHHHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHH
Confidence 45677888999999999999999963 3444442 232 22 899999999999999985
Q ss_pred CCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCC
Q 042564 303 LNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGG 361 (498)
Q Consensus 303 l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 361 (498)
+++++ ..+|++++|++|+|||+|||+. +..+..|..||+.+|.+|.+.
T Consensus 651 --~~~l~--------~~vd~~~~t~~~~VyAiGD~~~-~~~~~~A~~~G~~aA~~i~~~ 698 (729)
T 1o94_A 651 --WNELK--------ARESEWAENDIKGIYLIGDAEA-PRLIADATFTGHRVAREIEEA 698 (729)
T ss_dssp --HHHHH--------HTGGGTGGGTCCEEEECGGGTS-CCCHHHHHHHHHHHHHTTTSS
T ss_pred --HHHHh--------hhcccccccCCCCeEEEeCccc-hhhHHHHHHHHHHHHHHhhhh
Confidence 33321 1368899999999999999997 566778999999999999753
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=283.40 Aligned_cols=270 Identities=20% Similarity=0.242 Sum_probs=201.3
Q ss_pred ccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhc
Q 042564 18 EQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARS 97 (498)
Q Consensus 18 ~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~ 97 (498)
.+....+||+|||||+||++||+.|++.|++|+|+|+ ...+||+|.+..++|.
T Consensus 386 ~~~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~---------~~~~GG~~~~~~~~p~------------------ 438 (690)
T 3k30_A 386 RAKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEA---------GRDLGGRVTQESALPG------------------ 438 (690)
T ss_dssp CCCSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECS---------SSSSCTHHHHHHTSTT------------------
T ss_pred CcccccceEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCEeeeccCCCc------------------
Confidence 3445578999999999999999999999999999995 4567888754333331
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 98 YGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
..++..+.. ++...+.+. +++++.++. +...++ ..+.||+||+|||+.
T Consensus 439 ---------~~~~~~~~~-----------~~~~~~~~~~gv~~~~~~~---------v~~~~~--~~~~~d~lvlAtG~~ 487 (690)
T 3k30_A 439 ---------LSAWGRVKE-----------YREAVLAELPNVEIYRESP---------MTGDDI--VEFGFEHVITATGAT 487 (690)
T ss_dssp ---------CGGGGHHHH-----------HHHHHHHTCTTEEEESSCC---------CCHHHH--HHTTCCEEEECCCEE
T ss_pred ---------hhHHHHHHH-----------HHHHHHHHcCCCEEEECCe---------ecHHHH--hhcCCCEEEEcCCCc
Confidence 011222222 233344554 788776531 111122 257899999999998
Q ss_pred --------CCCCCCCCCC--cccChHHHhcccc-CCCeEEEEc--CCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCC-CH
Q 042564 177 --------AQRAPIPGQE--LAITSDEALSLEE-LPKRAVVLG--GGYIAVEFASIWRGMGSTVDLLFRKELPLRGF-DD 242 (498)
Q Consensus 177 --------p~~p~i~g~~--~~~~~~~~~~l~~-~~~~v~ViG--~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~-~~ 242 (498)
|..|++||.+ .+++..+++.... ..++++||| +|.+|+|+|..|.+.|.+|+++++.+.+++.. ++
T Consensus 488 ~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~ 567 (690)
T 3k30_A 488 WRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNT 567 (690)
T ss_dssp ECSSCCSSSCSSCCCBCTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGG
T ss_pred cccccccccCCCCCCCCCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccc
Confidence 4577888875 4677777766432 356899999 99999999999999999999999988876653 35
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE---CCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeE
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT---DHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~ 319 (498)
.....+.+.+++.||++++++.|.++.. ++..+.. .+++++++|.||+|+|++|+.+++ +..+.. +.
T Consensus 568 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~--~~l~~~----~~-- 637 (690)
T 3k30_A 568 FEVNRIQRRLIENGVARVTDHAVVAVGA--GGVTVRDTYASIERELECDAVVMVTARLPREELY--LDLVAR----RD-- 637 (690)
T ss_dssp TCHHHHHHHHHHTTCEEEESEEEEEEET--TEEEEEETTTCCEEEEECSEEEEESCEEECCHHH--HHHHHH----HH--
T ss_pred hhHHHHHHHHHHCCCEEEcCcEEEEEEC--CeEEEEEccCCeEEEEECCEEEECCCCCCChHHH--HHHhhh----hc--
Confidence 5677888899999999999999999964 4444443 255689999999999999999863 332211 11
Q ss_pred cCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCC
Q 042564 320 VDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGG 361 (498)
Q Consensus 320 vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 361 (498)
+|+.|+|||+|||+.. .....|..||+.+|++|.+.
T Consensus 638 -----~t~~~~VyaiGD~~~~-~~~~~A~~~g~~aa~~i~~~ 673 (690)
T 3k30_A 638 -----AGEIASVRGIGDAWAP-GTIAAAVWSGRRAAEEFDAV 673 (690)
T ss_dssp -----HTSCSEEEECGGGTSC-BCHHHHHHHHHHHHHHTTCC
T ss_pred -----ccCCCCEEEEeCCCch-hhHHHHHHHHHHHHHHHHhh
Confidence 8899999999999985 45566999999999999865
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=257.66 Aligned_cols=254 Identities=22% Similarity=0.289 Sum_probs=185.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.++||+|||||++|+++|.+|++. ++|+|+|+ ...+||.+.+... ..+++.
T Consensus 107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~---------~~~~GG~~~~~~~-------------------~~~g~~ 157 (493)
T 1y56_A 107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEE---------RGWLGGDMWLKGI-------------------KQEGFN 157 (493)
T ss_dssp EEESCCEECCSHHHHHHHHHHTTT-CCEEEECT---------TSSSSCSGGGTCS-------------------EETTTT
T ss_pred ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeC---------CCCCCCeeecccc-------------------ccCCCC
Confidence 458999999999999999999999 99999994 3446777643210 001111
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEe-CCCceEEEEcCeEEEcCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQ-LDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~-~~g~~~~~~~d~liiAtG~~p 177 (498)
. +..++. ..+...+ +.+++++.++ +..++ ...+.+.. .+++...+.||+||+|||+.|
T Consensus 158 ~------~~~~~~-----------~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~ 219 (493)
T 1y56_A 158 K------DSRKVV-----------EELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAID 219 (493)
T ss_dssp E------EHHHHH-----------HHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEE
T ss_pred C------CHHHHH-----------HHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCc
Confidence 0 111111 1111222 4578876654 33333 23343332 344445799999999999999
Q ss_pred CCCCCCCCCc--ccChHHHhccc-----cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHH
Q 042564 178 QRAPIPGQEL--AITSDEALSLE-----ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVAR 250 (498)
Q Consensus 178 ~~p~i~g~~~--~~~~~~~~~l~-----~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~ 250 (498)
+.|++||.+. +++..++..+. ...++++|+|+|++|+| +
T Consensus 220 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle----------------------------------~ 265 (493)
T 1y56_A 220 STMLFENNDMPGVFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI----------------------------------Q 265 (493)
T ss_dssp CCCCCTTTTSTTEEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH----------------------------------H
T ss_pred cCCCCCCCCCCCEEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH----------------------------------H
Confidence 9999998753 55555544321 23489999999999988 4
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCcee--CCCCCeE-cCCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEV--DQTGAVK-VDENSRTN 327 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~--~~~g~i~-vd~~~~t~ 327 (498)
.+++.||++++++.|.++..+++...+.+.+|+++++|.||+|+|++|+.++ ++.+|+++ +++|+|. ||++++ +
T Consensus 266 ~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l--~~~~g~~~~~~~~g~i~~vd~~~~-s 342 (493)
T 1y56_A 266 ELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINP--ITQAGGKLRFRRGYYSPVLDEYHR-I 342 (493)
T ss_dssp HHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHH--HHHTTCCEEEETTEEEECCCTTSE-E
T ss_pred HHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchH--HHhcCCCccccCCceeeccccccC-c
Confidence 5667899999999999998665445677888889999999999999999987 56666654 5778887 899999 9
Q ss_pred CCCeEEecccCCCCCChHHHHHHHHHHHHHHhC
Q 042564 328 VPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 328 ~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 360 (498)
.|+|||+|||++. .++..|..||+++|.+|.+
T Consensus 343 ~~~vya~GD~~~~-~~~~~A~~~g~~aa~~i~~ 374 (493)
T 1y56_A 343 KDGIYVAGSAVSI-KPHYANYLEGKLVGAYILK 374 (493)
T ss_dssp ETTEEECSTTTCC-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeccCCc-cCHHHHHHHHHHHHHHHHH
Confidence 9999999999984 5788999999999999975
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=265.92 Aligned_cols=255 Identities=21% Similarity=0.332 Sum_probs=191.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..+||+|||||+||++||..|++.|++|+|||+ ...+||+|.+..++|.+
T Consensus 372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~---------~~~~gg~~~~~~~~~~~--------------------- 421 (671)
T 1ps9_A 372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDA---------HSEIGGQFNIAKQIPGK--------------------- 421 (671)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEES---------SSSSCTTHHHHTTSTTC---------------------
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeC---------CCCCCCeeeccccCCCH---------------------
Confidence 458999999999999999999999999999994 34578887654444421
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEE-EcCeEEEcCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSY-SAKHILIATGSRAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~-~~d~liiAtG~~p~~p 180 (498)
.++..+. .++...+++.+++++.++... . . .+ .||+||||||++|+.|
T Consensus 422 ------~~~~~~~-----------~~~~~~~~~~gv~~~~~~~v~---------~-~----~~~~~d~lviAtG~~p~~~ 470 (671)
T 1ps9_A 422 ------EEFYETL-----------RYYRRMIEVTGVTLKLNHTVT---------A-D----QLQAFDETILASGIVPRTP 470 (671)
T ss_dssp ------TTHHHHH-----------HHHHHHHHHHTCEEEESCCCC---------S-S----SSCCSSEEEECCCEEECCC
T ss_pred ------HHHHHHH-----------HHHHHHHHHcCCEEEeCcEec---------H-H----HhhcCCEEEEccCCCcCCC
Confidence 1111111 123344556689988865211 0 1 24 8999999999999999
Q ss_pred CCCCCCc--ccChHHHhccc-cCCCeEEEEcCCHHHHHHHHHHHHCCC--------------------------------
Q 042564 181 PIPGQEL--AITSDEALSLE-ELPKRAVVLGGGYIAVEFASIWRGMGS-------------------------------- 225 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~l~-~~~~~v~ViG~G~~g~e~a~~l~~~g~-------------------------------- 225 (498)
++||.+. +++..+.+... ..+++|+|||+|++|+|+|..|.+.|.
T Consensus 471 ~i~G~~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 550 (671)
T 1ps9_A 471 PIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQI 550 (671)
T ss_dssp CCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCC
T ss_pred CCCCCCCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhccccccccccccccccccc
Confidence 9999753 56666666543 357899999999999999999998773
Q ss_pred -----cEEEEeeCCCCCCC-CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC--eEEEcCEEEEecCCC
Q 042564 226 -----TVDLLFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG--EEIVADVVLFATGRA 297 (498)
Q Consensus 226 -----~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~ 297 (498)
+|+++++.+..+.. +++.....+.+.+++.||++++++.+.++. ++++.+. .+| +++++|.||+|+|++
T Consensus 551 ~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~--~~~v~~~-~~G~~~~i~~D~Vi~a~G~~ 627 (671)
T 1ps9_A 551 PRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVV-INGETQVLAVDNVVICAGQE 627 (671)
T ss_dssp CCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEEEE-ETTEEEEECCSEEEECCCEE
T ss_pred CCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEe--CCeEEEe-cCCeEEEEeCCEEEECCCcc
Confidence 45677776655543 667777788889999999999999999986 3454444 566 579999999999999
Q ss_pred cCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCC-CChHHHHHHHHHHHHHH
Q 042564 298 PNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRM-NLTPVALMEGTCFAKTV 358 (498)
Q Consensus 298 p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~-~~~~~A~~~g~~aa~~i 358 (498)
||.+++ +.+ . ...++||++|||+... ..+..|++||..+|.||
T Consensus 628 p~~~l~--~~l----~------------~~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 628 PNRALA--QPL----I------------DSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671 (671)
T ss_dssp ECCTTH--HHH----H------------TTTCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred ccHHHH--HHH----H------------hcCCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence 999863 221 1 1236899999998753 46889999999999985
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-29 Score=256.90 Aligned_cols=300 Identities=20% Similarity=0.246 Sum_probs=196.9
Q ss_pred CccEEEECCChhHHHHHHHHH-hCCCcEEEEccCCCCCCCCcCCCcccccccc---Cc---hhhHHHHHHhHhhHHHhhh
Q 042564 23 DFDLFVIGAGSGGVRAARFSA-NFGAKVGICELPFHPISSEVIGGVGGTCVIR---GC---VPKKILVYGASFGGELEDA 95 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~-~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~---g~---~p~~~l~~~~~~~~~~~~~ 95 (498)
++||+|||||++|+++|..|+ +.|.+|+|+|+ ...+||+|.+. || +|++.+... +.... .
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~---------~~~~GGtw~~~~ypg~~~d~~s~~~~~~--~~~~~--~ 74 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDK---------ADGPGGTWYWNRYPGALSDTESHLYRFS--FDRDL--L 74 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEES---------SSSSCTHHHHCCCTTCEEEEEGGGSSCC--SCHHH--H
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEEC---------CCCCCCcccccCCCCceecCCcceeeec--ccccc--c
Confidence 589999999999999999999 89999999995 46788998543 44 443222111 00000 0
Q ss_pred hcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCc--EEEEeE-EEEE--eC--CEEEEEeCCCceEEEEcCe
Q 042564 96 RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGV--KLYEGE-GKIV--GP--NEVEVTQLDGTKLSYSAKH 168 (498)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~~~-~~~i--~~--~~~~v~~~~g~~~~~~~d~ 168 (498)
..+.+.. ...+..+ +..++....++.++ .+..++ +..+ +. ..+.|.+.+|+ +++||+
T Consensus 75 ~~~~~~~---~~~~~~e-----------i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~--~i~ad~ 138 (540)
T 3gwf_A 75 QESTWKT---TYITQPE-----------ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGE--VYRAKY 138 (540)
T ss_dssp HHCCCSB---SEEEHHH-----------HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSC--EEEEEE
T ss_pred cCCCCcc---cCCCHHH-----------HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCC--EEEeCE
Confidence 0111110 0111122 22334445555666 555554 3333 33 37888888876 789999
Q ss_pred EEEcCC--CCCCCCCCCCCCc-----ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-CCC-
Q 042564 169 ILIATG--SRAQRAPIPGQEL-----AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-LRG- 239 (498)
Q Consensus 169 liiAtG--~~p~~p~i~g~~~-----~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-l~~- 239 (498)
||+||| +.|..|++||.+. +++..........+++|+|||+|.+|+|+|..|.+.+.+|+++.|.+.+ ++.
T Consensus 139 lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~ 218 (540)
T 3gwf_A 139 VVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVG 218 (540)
T ss_dssp EEECCCSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECC
T ss_pred EEECCcccccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCc
Confidence 999999 7899999999763 2233222234456799999999999999999999999999999999873 333
Q ss_pred ---CCHHHHHHHHH------------------------------------------------------------------
Q 042564 240 ---FDDEMRAVVAR------------------------------------------------------------------ 250 (498)
Q Consensus 240 ---~~~~~~~~l~~------------------------------------------------------------------ 250 (498)
+.+...+.+.+
T Consensus 219 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 298 (540)
T 3gwf_A 219 NRPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEA 298 (540)
T ss_dssp CCBCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHH
T ss_pred cCCCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHH
Confidence 23332222220
Q ss_pred ----------------------------------------HHHhCCCEEEc--CccEEEEEEeCCeEEEEECCCeEEEcC
Q 042564 251 ----------------------------------------NLEGRGINLHP--RTTIKELIKSEEGVKVITDHGEEIVAD 288 (498)
Q Consensus 251 ----------------------------------------~l~~~Gv~i~~--~~~v~~i~~~~~~~~v~~~~g~~i~~D 288 (498)
.+.+.+|+++. +..|.+|..+ .|.+.+|+.+++|
T Consensus 299 ~~~~~~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~----gv~~~dG~~~~~D 374 (540)
T 3gwf_A 299 AASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK----GVVTEDGVLHELD 374 (540)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS----EEEETTCCEEECS
T ss_pred HHHHHHHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC----eEEcCCCCEEECC
Confidence 01144788874 5688888543 3788999999999
Q ss_pred EEEEecCCCcCCCCCCcccCCceeCCCCCeEcC----------CCCCC-CCCCeEEe-cccCCCCCChHHHHHHHHHHHH
Q 042564 289 VVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD----------ENSRT-NVPSIWAV-GDVTNRMNLTPVALMEGTCFAK 356 (498)
Q Consensus 289 ~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd----------~~~~t-~~~~iya~-GD~~~~~~~~~~A~~~g~~aa~ 356 (498)
.||+|||++++..++ .. +.+...+++.++ ..+.+ +.||+|++ |...........+..|++++++
T Consensus 375 vIV~ATGf~~~~~~~--~~--~~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~ 450 (540)
T 3gwf_A 375 VLVFATGFDAVDGNY--RR--IEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISD 450 (540)
T ss_dssp EEEECCCBSCSSHHH--HT--SEEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHHHHHHHHHH
T ss_pred EEEECCccCccccCc--Cc--ceEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHHHHHHHHHH
Confidence 999999999997432 22 222111223333 22333 88999999 8766544455677889999998
Q ss_pred HHh
Q 042564 357 TVF 359 (498)
Q Consensus 357 ~i~ 359 (498)
.|.
T Consensus 451 ~i~ 453 (540)
T 3gwf_A 451 TIG 453 (540)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=242.75 Aligned_cols=303 Identities=19% Similarity=0.162 Sum_probs=187.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHH-Hh--hhhcC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGE-LE--DARSY 98 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~-~~--~~~~~ 98 (498)
.++||+|||||++|+++|.+|++.|.+|+|||+ ...+||+|. ..|.|.......+..+.. .. ....+
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~---------~~~~GGtw~-~~~yPg~~~d~~~~~y~~~f~~~~~~~~ 77 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEA---------GEDVGGTWY-WNRYPGCRLDTESYAYGYFALKGIIPEW 77 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCTHHH-HCCCTTCBCSSCHHHHCHHHHTTSSTTC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeC---------CCCCCCccc-cCCCCceeecCchhhcccccCcccccCC
Confidence 458999999999999999999999999999995 467899984 455552110000000000 00 00001
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCc--EEEEeE-EEEE----eCCEEEEEeCCCceEEEEcCeEEE
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGV--KLYEGE-GKIV----GPNEVEVTQLDGTKLSYSAKHILI 171 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~~~-~~~i----~~~~~~v~~~~g~~~~~~~d~lii 171 (498)
.+. ....+..++.. ++....++.++ .+..++ +..+ +...+.|.+.+|+ +++||+||+
T Consensus 78 ~~~---~~~~~~~ei~~-----------yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~--~~~ad~lV~ 141 (545)
T 3uox_A 78 EWS---ENFASQPEMLR-----------YVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEE--VVTCRFLIS 141 (545)
T ss_dssp CCS---BSSCBHHHHHH-----------HHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTE--EEEEEEEEE
T ss_pred Ccc---ccCCCHHHHHH-----------HHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCC--EEEeCEEEE
Confidence 111 01112222222 22333333343 333332 3322 2357788888875 899999999
Q ss_pred cCC--CCCCCCCCCCCCc-----ccChHHHhc-------cccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-
Q 042564 172 ATG--SRAQRAPIPGQEL-----AITSDEALS-------LEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP- 236 (498)
Q Consensus 172 AtG--~~p~~p~i~g~~~-----~~~~~~~~~-------l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~- 236 (498)
||| +.|..|++||.+. +++...... ....+++|+|||+|.+|+|+|..|.+.+.+|+++.|.+.+
T Consensus 142 AtG~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i 221 (545)
T 3uox_A 142 ATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWC 221 (545)
T ss_dssp CCCSCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCC
T ss_pred CcCCCCCCcCCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCcc
Confidence 999 8899999999763 233322222 3345789999999999999999999999999999999873
Q ss_pred CCCC----CHHHHHHHH---------------------------------------------------------------
Q 042564 237 LRGF----DDEMRAVVA--------------------------------------------------------------- 249 (498)
Q Consensus 237 l~~~----~~~~~~~l~--------------------------------------------------------------- 249 (498)
++.. ++...+.+.
T Consensus 222 ~p~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 301 (545)
T 3uox_A 222 TPLGNSPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKES 301 (545)
T ss_dssp EECCCCBCCHHHHHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHH
T ss_pred ccCCcCCCCHHHHHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHH
Confidence 3322 222221111
Q ss_pred --------------------------------------------HHHHhCCCEEEc--CccEEEEEEeCCeEEEEECCCe
Q 042564 250 --------------------------------------------RNLEGRGINLHP--RTTIKELIKSEEGVKVITDHGE 283 (498)
Q Consensus 250 --------------------------------------------~~l~~~Gv~i~~--~~~v~~i~~~~~~~~v~~~~g~ 283 (498)
+.|.+.+|+++. +..|.+|..+ .|.+.+|
T Consensus 302 ~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~----gv~~~dG- 376 (545)
T 3uox_A 302 NKFLADFVAKKIRQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPE----GIKTADA- 376 (545)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETT----EEEESSC-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccC----eEEeCCC-
Confidence 112233777775 6688888543 3778899
Q ss_pred EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCC-----------CCCCCCCeEEecccCCC---CCChHHHHH
Q 042564 284 EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDEN-----------SRTNVPSIWAVGDVTNR---MNLTPVALM 349 (498)
Q Consensus 284 ~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~-----------~~t~~~~iya~GD~~~~---~~~~~~A~~ 349 (498)
.+++|.||+|||+++++..+ . ++++...++..+++. +-.+.||+|.+.--... ......+..
T Consensus 377 ~~~~D~IV~ATGf~~~~~~~--~--~~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~ 452 (545)
T 3uox_A 377 AYDLDVIIYATGFDAVTGSL--D--RIDIRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCGGL 452 (545)
T ss_dssp EEECSEEEECCCCBSSSCSC--T--TSEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHHHH
T ss_pred eeecCEEEECCccccccccC--C--CceEECCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHHHH
Confidence 89999999999999987653 2 233322223334321 12378999998543321 344567788
Q ss_pred HHHHHHHHHh
Q 042564 350 EGTCFAKTVF 359 (498)
Q Consensus 350 ~g~~aa~~i~ 359 (498)
|++++++.|.
T Consensus 453 ~~~~i~~~i~ 462 (545)
T 3uox_A 453 QAEWVLRMIS 462 (545)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998874
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=238.69 Aligned_cols=301 Identities=18% Similarity=0.225 Sum_probs=190.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc---Cc---hhhHHHHHHhHhhHHHhh
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR---GC---VPKKILVYGASFGGELED 94 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~---g~---~p~~~l~~~~~~~~~~~~ 94 (498)
..++||+|||||++|+++|..|++.|.+|+|||+ ...+||+|.+. || +|++.+... +....
T Consensus 19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~---------~~~~GGtw~~~~ypg~~~dv~s~~y~~~--f~~~~-- 85 (549)
T 4ap3_A 19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEA---------ASGVGGVWYWNRYPGARCDVESIDYSYS--FSPEL-- 85 (549)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCTHHHHCCCTTCBCSSCTTTSSCC--SCHHH--
T ss_pred CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeC---------CCCCCCccccCCCCCceeCCCchhcccc--ccccc--
Confidence 4468999999999999999999999999999995 56789998632 55 453322111 00000
Q ss_pred hhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCc--EEEEeE-EEEE--eC--CEEEEEeCCCceEEEEcC
Q 042564 95 ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGV--KLYEGE-GKIV--GP--NEVEVTQLDGTKLSYSAK 167 (498)
Q Consensus 95 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~~~-~~~i--~~--~~~~v~~~~g~~~~~~~d 167 (498)
...+.+. ....+..+ +..++....++.++ .+..++ +..+ +. ..+.|.+.+|+ +++||
T Consensus 86 ~~~~~~~---~~~~~~~e-----------i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~--~i~ad 149 (549)
T 4ap3_A 86 EQEWNWS---EKYATQPE-----------ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGD--EVSAR 149 (549)
T ss_dssp HHHCCCS---SSSCBHHH-----------HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCC--EEEEE
T ss_pred ccCCCCc---cCCCCHHH-----------HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCC--EEEeC
Confidence 0011111 00111222 22334444555565 455543 3333 33 37888888876 79999
Q ss_pred eEEEcCC--CCCCCCCCCCCCc----ccChHHHh--ccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-CC
Q 042564 168 HILIATG--SRAQRAPIPGQEL----AITSDEAL--SLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-LR 238 (498)
Q Consensus 168 ~liiAtG--~~p~~p~i~g~~~----~~~~~~~~--~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-l~ 238 (498)
+||+||| +.|..|++||.+. .+.+.... .....+++|+|||+|.+|+|+|..|.+.+.+|+++.|.+.+ ++
T Consensus 150 ~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp 229 (549)
T 4ap3_A 150 FLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIP 229 (549)
T ss_dssp EEEECCCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEE
T ss_pred EEEECcCCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCcccc
Confidence 9999999 8999999999863 22222221 23335799999999999999999999999999999999874 33
Q ss_pred CCCHHHHHHHHH--------------------------------------------------------------------
Q 042564 239 GFDDEMRAVVAR-------------------------------------------------------------------- 250 (498)
Q Consensus 239 ~~~~~~~~~l~~-------------------------------------------------------------------- 250 (498)
..++++.....+
T Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (549)
T 4ap3_A 230 AGNVPLDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDT 309 (549)
T ss_dssp CC----CHHHHHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHH
T ss_pred CcCCCCCHHHHHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHH
Confidence 322221111110
Q ss_pred ------------------------------------------HHHhCCCEEE--cCccEEEEEEeCCeEEEEECCCeEEE
Q 042564 251 ------------------------------------------NLEGRGINLH--PRTTIKELIKSEEGVKVITDHGEEIV 286 (498)
Q Consensus 251 ------------------------------------------~l~~~Gv~i~--~~~~v~~i~~~~~~~~v~~~~g~~i~ 286 (498)
.+.+.+|+++ ....|.+|..+ .|.+.+| .++
T Consensus 310 ~~~~~~~~~~~~v~d~~~~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~----gv~~~dG-~~~ 384 (549)
T 4ap3_A 310 ARAFWEEKIRAVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDET----GIVTTGA-HYD 384 (549)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETT----EEEESSC-EEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCC----cEEeCCC-cee
Confidence 0122377776 24678888542 3778899 899
Q ss_pred cCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCC--------C--CC-CCCCCeEEecccCCC---CCChHHHHHHHH
Q 042564 287 ADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDE--------N--SR-TNVPSIWAVGDVTNR---MNLTPVALMEGT 352 (498)
Q Consensus 287 ~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~--------~--~~-t~~~~iya~GD~~~~---~~~~~~A~~~g~ 352 (498)
+|.||+|||++++..++ .. +.+...+++.+++ + +. .+.||+|.+.--... ......+..|++
T Consensus 385 ~D~iI~ATGf~~~~~~~--~~--~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~~~~~e~~~~ 460 (549)
T 4ap3_A 385 LDMIVLATGFDAMTGSL--DK--LEIVGRGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVD 460 (549)
T ss_dssp CSEEEECCCEEESSTTG--GG--SEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGGGSCHHHHHHHHHH
T ss_pred cCEEEECCccccccccc--Cc--eeEECCCCcCHHHhhccchhhccccccCCCCcEEEEeCCCCCCcCccHHHHHHHHHH
Confidence 99999999999987542 22 2222222344442 1 22 278999998433321 334556778899
Q ss_pred HHHHHHh
Q 042564 353 CFAKTVF 359 (498)
Q Consensus 353 ~aa~~i~ 359 (498)
++++.|.
T Consensus 461 ~i~~~i~ 467 (549)
T 4ap3_A 461 WVADAIA 467 (549)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988774
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.6e-26 Score=235.62 Aligned_cols=303 Identities=17% Similarity=0.172 Sum_probs=187.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHH---HhhhhcC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGE---LEDARSY 98 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~---~~~~~~~ 98 (498)
.++||+|||||++|+++|..|++.|.+|+|+|+ ...+||+|. .+|.|...+...+..+.. ......+
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~---------~~~~GG~w~-~~~~pg~~~d~~~~~~~~~f~~~~~~~~ 84 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIET---------AGDVGGVWY-WNRYPGARCDIESIEYCYSFSEEVLQEW 84 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCTHHH-HCCCTTCBCSSCTTTSSCCSCHHHHHHC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeC---------CCCCCCccc-ccCCCceeecccccccccccChhhhhcc
Confidence 468999999999999999999999999999995 456889984 345553111000000000 0000001
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCC--cEEEEeE-EEEE--e--CCEEEEEeCCCceEEEEcCeEEE
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAG--VKLYEGE-GKIV--G--PNEVEVTQLDGTKLSYSAKHILI 171 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~~~-~~~i--~--~~~~~v~~~~g~~~~~~~d~lii 171 (498)
.+. ....+..++. .++....++.+ +.+..++ +..+ + ...+.|.+.+|+ ++++|+||+
T Consensus 85 ~~~---~~~~~~~~i~-----------~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~--~~~ad~vV~ 148 (542)
T 1w4x_A 85 NWT---ERYASQPEIL-----------RYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD--RIRARYLIM 148 (542)
T ss_dssp CCC---BSSCBHHHHH-----------HHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC--EEEEEEEEE
T ss_pred Ccc---cccCCHHHHH-----------HHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCC--EEEeCEEEE
Confidence 110 0011112222 22223333333 3344443 3332 2 246888887775 789999999
Q ss_pred cCC--CCCCCCCCCCCCc-----ccChHHHhc-cccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-CC---
Q 042564 172 ATG--SRAQRAPIPGQEL-----AITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RG--- 239 (498)
Q Consensus 172 AtG--~~p~~p~i~g~~~-----~~~~~~~~~-l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-~~--- 239 (498)
||| +.|..|++||.+. +++...... ....+++|+|||+|.+|+|++..+.+.+.+|+++.|.+.+. +.
T Consensus 149 AtG~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~ 228 (542)
T 1w4x_A 149 ASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNA 228 (542)
T ss_dssp CCCSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCC
T ss_pred CcCCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCC
Confidence 999 6788999998753 222221111 23357999999999999999999999999999999987652 22
Q ss_pred -CCHHHHHH-----------------------------------------------------------------------
Q 042564 240 -FDDEMRAV----------------------------------------------------------------------- 247 (498)
Q Consensus 240 -~~~~~~~~----------------------------------------------------------------------- 247 (498)
+.++..+.
T Consensus 229 ~~~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 308 (542)
T 1w4x_A 229 PLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEF 308 (542)
T ss_dssp BCCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHH
Confidence 12211110
Q ss_pred HHH-----------------------------------HHHhCCCEEE--cCccEEEEEEeCCeEEEEECCCeEEEcCEE
Q 042564 248 VAR-----------------------------------NLEGRGINLH--PRTTIKELIKSEEGVKVITDHGEEIVADVV 290 (498)
Q Consensus 248 l~~-----------------------------------~l~~~Gv~i~--~~~~v~~i~~~~~~~~v~~~~g~~i~~D~v 290 (498)
+.+ .+.+.+|+++ .+..|.++.. + .|+++| +++++|.|
T Consensus 309 ~~~~~~~~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~--~--gv~~~d-~~~~~D~i 383 (542)
T 1w4x_A 309 IRNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP--R--GVRTSE-REYELDSL 383 (542)
T ss_dssp HHHHHHHHCSSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECS--S--EEEESS-CEEECSEE
T ss_pred HHHHHHHHcCCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcC--C--eEEeCC-eEEecCEE
Confidence 001 1112346665 3557777743 2 377788 88999999
Q ss_pred EEecCCCcCCCCCCcccCCceeCCCCCeEcCC--------C--CC-CCCCCeEEe-cccCC--CCCChHHHHHHHHHHHH
Q 042564 291 LFATGRAPNTKRLNLKAVGVEVDQTGAVKVDE--------N--SR-TNVPSIWAV-GDVTN--RMNLTPVALMEGTCFAK 356 (498)
Q Consensus 291 i~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~--------~--~~-t~~~~iya~-GD~~~--~~~~~~~A~~~g~~aa~ 356 (498)
|+|||+++++.+ +...++. +.+| +.+++ + +. ...||+|++ |+.+. .......|..|++++++
T Consensus 384 i~atG~~~~~~~--~~~~~i~-g~~G-~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~ 459 (542)
T 1w4x_A 384 VLATGFDALTGA--LFKIDIR-GVGN-VALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTD 459 (542)
T ss_dssp EECCCCCCTTHH--HHTSEEE-CGGG-CBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHH
T ss_pred EEcCCccccccC--cCceeeE-CCCC-CCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHH
Confidence 999999998765 2332222 2333 33332 2 22 278999998 99864 24455789999999999
Q ss_pred HHh
Q 042564 357 TVF 359 (498)
Q Consensus 357 ~i~ 359 (498)
+|.
T Consensus 460 ~i~ 462 (542)
T 1w4x_A 460 HIA 462 (542)
T ss_dssp HHH
T ss_pred HHH
Confidence 985
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=184.94 Aligned_cols=151 Identities=20% Similarity=0.303 Sum_probs=134.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC---------CC-----CHHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR---------GF-----DDEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~---------~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
+++|||+|++|+++|..|.+.|.+|+++++.+..+. .+ ++++.+.+.+.+++.|++++++ +|.++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 689999999999999999999999999999876552 23 4788999999999999999999 99999
Q ss_pred EEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCC-ChHHH
Q 042564 269 IKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMN-LTPVA 347 (498)
Q Consensus 269 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~-~~~~A 347 (498)
..+++.+.+.+++| ++++|.||+|+|..|+. ++..|++++ +|.|.||++++|+.|+|||+|||+..+. +++.|
T Consensus 82 ~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~----~~~~g~~~~-~g~i~vd~~~~t~~~~i~a~GD~~~~~~~~~~~A 155 (180)
T 2ywl_A 82 RDMGGVFEVETEEG-VEKAERLLLCTHKDPTL----PSLLGLTRR-GAYIDTDEGGRTSYPRVYAAGVARGKVPGHAIIS 155 (180)
T ss_dssp EECSSSEEEECSSC-EEEEEEEEECCTTCCHH----HHHHTCCEE-TTEECCCTTCBCSSTTEEECGGGGTCCSCCHHHH
T ss_pred EEcCCEEEEEECCC-EEEECEEEECCCCCCCc----cccCCCCcc-CceEEeCCCCCcCCCCEEEeecccCcchhhHHHH
Confidence 88777778888888 79999999999999864 356678888 8899999999999999999999999765 88999
Q ss_pred HHHHHHHHHHHhC
Q 042564 348 LMEGTCFAKTVFG 360 (498)
Q Consensus 348 ~~~g~~aa~~i~~ 360 (498)
..||+++|.||.+
T Consensus 156 ~~~g~~aa~~i~~ 168 (180)
T 2ywl_A 156 AGDGAYVAVHLVS 168 (180)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH
Confidence 9999999999975
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-22 Score=204.07 Aligned_cols=311 Identities=16% Similarity=0.209 Sum_probs=176.6
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccc--ccccCchhhHHHHHH-----------------
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGT--CVIRGCVPKKILVYG----------------- 85 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~--~~~~g~~p~~~l~~~----------------- 85 (498)
||+|||||+||+++|+.|++.|.+|+|+||. ..........||. |.+.+|.|.+.+...
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~--~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~ 78 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR--IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVT 78 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS--TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC--CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 7999999999999999999999999999963 1111111112232 445556665433221
Q ss_pred hHhhHHHhhhhcCCcccccc----cccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEE-EEeC
Q 042564 86 ASFGGELEDARSYGWEVHEK----IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVE-VTQL 157 (498)
Q Consensus 86 ~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~-v~~~ 157 (498)
......+..+..+|.++... ....+.......+..-..+...+.+.+++.+++++.++ + .+ +.+.+. +...
T Consensus 79 ~~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~ 157 (472)
T 2e5v_A 79 SEAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTE 157 (472)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEET
T ss_pred HHHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEE
Confidence 01122334444555544320 00000000000000011222333444466799999886 5 44 445442 2222
Q ss_pred CCceEEEEcCeEEEcCCCCCCCCCCCCCCcccChHHH----------hccccCC--CeEEEEcCCHHHHHHHHHHHHCCC
Q 042564 158 DGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEA----------LSLEELP--KRAVVLGGGYIAVEFASIWRGMGS 225 (498)
Q Consensus 158 ~g~~~~~~~d~liiAtG~~p~~p~i~g~~~~~~~~~~----------~~l~~~~--~~v~ViG~G~~g~e~a~~l~~~g~ 225 (498)
+. ...+.+|.||+|||+.+..++++......+.+.+ ..++... ..++++|+| +++++..++..|.
T Consensus 158 ~~-~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~ 234 (472)
T 2e5v_A 158 KR-GLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGA 234 (472)
T ss_dssp TT-EEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHHTTC
T ss_pred eC-CCeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcCCce
Confidence 11 1257799999999998876654322222233221 1111111 134456766 8888889999998
Q ss_pred cEEEEeeCCCCCCCCCHHH--------HHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEE-cCEEEEecCC
Q 042564 226 TVDLLFRKELPLRGFDDEM--------RAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIV-ADVVLFATGR 296 (498)
Q Consensus 226 ~V~lv~~~~~~l~~~~~~~--------~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~-~D~vi~a~G~ 296 (498)
.+ +..+++++++.++++. ...+.+.+++.|. ++++... + +. + .+.++ .+.++.+.|.
T Consensus 235 ~~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~~--~---~~-----~--~~~~~~~~~~~~~~G~ 300 (472)
T 2e5v_A 235 QI-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLSK--I---ED-----F--ERKFPVVAKYLARHGH 300 (472)
T ss_dssp EE-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECTT--C---TT-----H--HHHCHHHHHHHHHTTC
T ss_pred EE-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEeccc--h---HH-----H--HHHhHHHHHHHHHhCc
Confidence 77 7788888876555432 5566666766653 3332210 0 00 0 01232 4667888899
Q ss_pred CcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCC-C----CCChHHHHHHHHHHHHHH
Q 042564 297 APNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN-R----MNLTPVALMEGTCFAKTV 358 (498)
Q Consensus 297 ~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~-~----~~~~~~A~~~g~~aa~~i 358 (498)
.|+ +++...... ....|+|.||+++||++|+|||+|||++ . ..+...+..+|.+.++.+
T Consensus 301 dp~-~~i~v~p~~--~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a 364 (472)
T 2e5v_A 301 NYK-VKIPIFPAA--HFVDGGIRVNIRGESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINL 364 (472)
T ss_dssp CTT-SCEECEEEE--EEESCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHG
T ss_pred Ccc-cceEeehhh--ceeCCCeEECCCCccccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHH
Confidence 999 664332222 2336899999999999999999999987 3 256777777766655554
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-18 Score=175.16 Aligned_cols=236 Identities=19% Similarity=0.199 Sum_probs=140.7
Q ss_pred HHhHHHHHHHHhCCcEEEEeE-EEEE---eC-------CEEEEEeC---CCceEEEEcCeEEEcCCCCCCCCCCCCC-Cc
Q 042564 123 RLNGIYKRLLSNAGVKLYEGE-GKIV---GP-------NEVEVTQL---DGTKLSYSAKHILIATGSRAQRAPIPGQ-EL 187 (498)
Q Consensus 123 ~~~~~~~~~~~~~gv~~~~~~-~~~i---~~-------~~~~v~~~---~g~~~~~~~d~liiAtG~~p~~p~i~g~-~~ 187 (498)
++..+++...++.+..+..++ +..+ +. ..+.|+.. .|+..++.++.||+|||..|.+|..++. ..
T Consensus 146 E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP~~~~~~g~ 225 (501)
T 4b63_A 146 EFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMPSGLPQDPR 225 (501)
T ss_dssp HHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCCTTSCCCTT
T ss_pred HHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCCCCCCCCcc
Confidence 344555555555555555554 3333 21 24677653 3556789999999999999988875543 23
Q ss_pred ccChHHHhc-------cccCCCeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCCC---------CCHHHH----
Q 042564 188 AITSDEALS-------LEELPKRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPLRG---------FDDEMR---- 245 (498)
Q Consensus 188 ~~~~~~~~~-------l~~~~~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l~~---------~~~~~~---- 245 (498)
++.+.++.. -...+|+|+|||+|.+|+|++..|.+. +.+|+++.|.+.+.+. +.++..
T Consensus 226 v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~ 305 (501)
T 4b63_A 226 IIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFY 305 (501)
T ss_dssp EEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHH
T ss_pred eeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCccccccccccchhhcCHHHHHHHH
Confidence 443333322 123478999999999999999999764 6799999998765432 111111
Q ss_pred -------HH--------------------HHH-----HHH-----hCCCEEEcCccEEEEEEeCC--eE-----------
Q 042564 246 -------AV--------------------VAR-----NLE-----GRGINLHPRTTIKELIKSEE--GV----------- 275 (498)
Q Consensus 246 -------~~--------------------l~~-----~l~-----~~Gv~i~~~~~v~~i~~~~~--~~----------- 275 (498)
.. +.+ .+. .....+..+..+..+..... .+
T Consensus 306 ~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~ 385 (501)
T 4b63_A 306 SQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPES 385 (501)
T ss_dssp TSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEECSEEEEEEECCSSSSCEEEEEEESCC--
T ss_pred hCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecCCcceeeeeecCCCCeEEEEeeeeEEeC
Confidence 11 101 111 01123455555555543222 12
Q ss_pred -EEEECCCeEEEcCEEEEecCCCcCCCC--CCcccCCceeCCCCCeEcCCCCCC--------CCCCeEEecccCC-----
Q 042564 276 -KVITDHGEEIVADVVLFATGRAPNTKR--LNLKAVGVEVDQTGAVKVDENSRT--------NVPSIWAVGDVTN----- 339 (498)
Q Consensus 276 -~v~~~~g~~i~~D~vi~a~G~~p~~~~--l~l~~~gi~~~~~g~i~vd~~~~t--------~~~~iya~GD~~~----- 339 (498)
.+.+.+|+++++|.||+|||++|+... +.. ...+..+.+|...|+.+++. ..++||+.|-+..
T Consensus 386 ~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~-~~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~~thG~~ 464 (501)
T 4b63_A 386 EGAANDVKETLEVDALMVATGYNRNAHERLLSK-VQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLS 464 (501)
T ss_dssp ------CCCEEEESEEEECCCEECCTHHHHTGG-GGGGSSTTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCHHHHCTT
T ss_pred CeeEeCCCeEEECCEEEECcCCCCCCcchhcch-hhhcCcCcCCCeeeCCCcEEeecCCccCCCceEEecCCCcccCCcc
Confidence 234567889999999999999988642 111 12355566777888876542 2467999985432
Q ss_pred CCCChHHHHHHHHHHHHHHhC
Q 042564 340 RMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 340 ~~~~~~~A~~~g~~aa~~i~~ 360 (498)
.+.+.-.|.+.|+++ +.|+|
T Consensus 465 ~~~Ls~~a~R~~~I~-~~l~g 484 (501)
T 4b63_A 465 DSLLSVLAVRGGEMV-QSIFG 484 (501)
T ss_dssp TTSSTTHHHHHHHHH-HHHHH
T ss_pred hhhHHHHHHHHHHHH-HHHhc
Confidence 255666788888754 44554
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-19 Score=179.79 Aligned_cols=201 Identities=19% Similarity=0.224 Sum_probs=115.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCC-----Cccccc--cccCchhhHHHHHHhH-------
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIG-----GVGGTC--VIRGCVPKKILVYGAS------- 87 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~-----~~GG~~--~~~g~~p~~~l~~~~~------- 87 (498)
.+|||+|||||++|+++|+.|++.|.+|+|+|+ .+..+ .-||.| .+.+|.|.+.+.....
T Consensus 3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk------~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~ 76 (401)
T 2gqf_A 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDN------GKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALA 76 (401)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECS------SSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeC------CCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHH
Confidence 358999999999999999999999999999994 22111 125677 5666766432110000
Q ss_pred ---hhHHHhhhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--e----CCEEEEEeC
Q 042564 88 ---FGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--G----PNEVEVTQL 157 (498)
Q Consensus 88 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~----~~~~~v~~~ 157 (498)
..+.+.....+|+.+... ++..++... ....+...+...+++.|++++.++ +..+ + .+.+.|.+.
T Consensus 77 ~~~~~~~~~~~~~~Gi~~~~~---~~g~~~p~~--~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~ 151 (401)
T 2gqf_A 77 RYTNWDFISLVAEQGITYHEK---ELGQLFCDE--GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVN 151 (401)
T ss_dssp HSCHHHHHHHHHHTTCCEEEC---STTEEEETT--CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEET
T ss_pred hCCHHHHHHHHHhCCCceEEC---cCCEEccCC--CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEEC
Confidence 011122223334332110 000000000 111222344455566799999886 4333 3 455777765
Q ss_pred CCceEEEEcCeEEEcCCCCCC--------------------CCCCCCCCcc-cChHH-H---hccccCCCeEEEEc----
Q 042564 158 DGTKLSYSAKHILIATGSRAQ--------------------RAPIPGQELA-ITSDE-A---LSLEELPKRAVVLG---- 208 (498)
Q Consensus 158 ~g~~~~~~~d~liiAtG~~p~--------------------~p~i~g~~~~-~~~~~-~---~~l~~~~~~v~ViG---- 208 (498)
++ .+++|+||+|||+.+. .|..|+.... ++.++ + +.....+.++.|+|
T Consensus 152 ~g---~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~l~g~~~~~~~~i~G~~~~ 228 (401)
T 2gqf_A 152 ST---QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLPVTITALCGKSF 228 (401)
T ss_dssp TE---EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCEECCGGGGGGGGGTTCEEEEEEEETTSCEE
T ss_pred CC---EEECCEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCcceeeceecCCchhhcccCCCeeeeeEEEEcCCceE
Confidence 54 6999999999998873 2333443222 23333 3 22223355666668
Q ss_pred -----------CCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCH
Q 042564 209 -----------GGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDD 242 (498)
Q Consensus 209 -----------~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~ 242 (498)
+|+++++++..+.. |.++++ .++|.++.
T Consensus 229 ~g~~l~t~~g~sG~~~l~~s~~~~~-~~~~~i-----~~~p~~~~ 267 (401)
T 2gqf_A 229 YNQLLFTHRGISGPAVLQISNYWQP-TESVEI-----DLLPNHNV 267 (401)
T ss_dssp EEEEEECSSEEESHHHHHHTTTCCT-TCCEEE-----ESCSSSCH
T ss_pred EeCEEEECCCccHHHHHHHHHHHhc-CCEEEE-----ECCCCCCH
Confidence 89999999988765 777775 34566553
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=140.73 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=114.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-----------------CCCCC-------CHHHHHHHHHHHHhC-C
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-----------------PLRGF-------DDEMRAVVARNLEGR-G 256 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-----------------~l~~~-------~~~~~~~l~~~l~~~-G 256 (498)
.+|+|||+|+.|+++|..|++.|.+|+++++... ++..+ ...+.+.+.+.+++. |
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 3799999999999999999999999999998621 00001 136677788888887 9
Q ss_pred CEEEcCccEEEEEEeCCeE-EEEECCCeEEEcCEEEEecCCCcCCCCC---------------------CcccCCceeCC
Q 042564 257 INLHPRTTIKELIKSEEGV-KVITDHGEEIVADVVLFATGRAPNTKRL---------------------NLKAVGVEVDQ 314 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~~l---------------------~l~~~gi~~~~ 314 (498)
++++ +++|+++..+++.+ .+.+.+|+++.+|.||+|+|..++.... .+.+.++.++.
T Consensus 84 v~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~ 162 (232)
T 2cul_A 84 LHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFVE 162 (232)
T ss_dssp EEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEEE
T ss_pred cEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEEc
Confidence 9998 56999998777663 6778888889999999999996553310 01122333321
Q ss_pred CC--------C-------eEcCC------CC-CCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhC
Q 042564 315 TG--------A-------VKVDE------NS-RTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 315 ~g--------~-------i~vd~------~~-~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 360 (498)
.. . ..+.. .+ .|++|+|||+|||+ .......|+.||+.+|.+|..
T Consensus 163 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g~~~~~~~~g~~~a~~i~~ 229 (232)
T 2cul_A 163 REGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REGDYARMSEEGKRLAEHLLH 229 (232)
T ss_dssp EEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCccHHHHHHHHHHHHHHHHh
Confidence 10 0 00110 12 37999999999999 777888899999999999864
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-17 Score=168.21 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC--------CCcCCCCCCcccCCceeCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG--------RAPNTKRLNLKAVGVEVDQ 314 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G--------~~p~~~~l~l~~~gi~~~~ 314 (498)
.+...+...+++.| +++++++|++|..+++++.|++.+|+++.+|.||+|+| +.|+.+...++..+....
T Consensus 205 g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~- 282 (431)
T 3k7m_X 205 GSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHG- 282 (431)
T ss_dssp CTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCC-
T ss_pred cHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCC-
Confidence 34455556566678 99999999999887778889999998899999999999 888887533332222222
Q ss_pred CCCeEcCCCCCCCCCCeEEecccCCC
Q 042564 315 TGAVKVDENSRTNVPSIWAVGDVTNR 340 (498)
Q Consensus 315 ~g~i~vd~~~~t~~~~iya~GD~~~~ 340 (498)
...++|+..++|+.+++|+.||+...
T Consensus 283 ~~~~kv~~~~~~~~~~i~~~~d~~~~ 308 (431)
T 3k7m_X 283 GQGLKILIHVRGAEAGIECVGDGIFP 308 (431)
T ss_dssp CCEEEEEEEEESCCTTEEEEBSSSSS
T ss_pred cceEEEEEEECCCCcCceEcCCCCEE
Confidence 23599999999999999999998543
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-15 Score=152.30 Aligned_cols=170 Identities=17% Similarity=0.192 Sum_probs=99.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhc----
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARS---- 97 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~---- 97 (498)
.+|||||||||+||++||+.|++.|.+|+|||+ .+ ..+| +.+|.|+...+....+...+..+..
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk------~~--~~iG----~~~Cnps~ggia~~~lv~ei~algg~~~~ 94 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTH------NI--DTLG----QMSCNPAIGGIGKGHLVKEVDALGGLMAK 94 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEES------CG--GGTT----CCSSSSEEESTTHHHHHHHHHHTTCSHHH
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCCEEEEee------cc--cccc----cccccccccchhhHHHHHHHHHhccHHHH
Confidence 469999999999999999999999999999994 11 1122 2345543211111111111111100
Q ss_pred ----CCccccc-----cc-------ccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEEE--eCCEE-EEEeC
Q 042564 98 ----YGWEVHE-----KI-------DFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKIV--GPNEV-EVTQL 157 (498)
Q Consensus 98 ----~g~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~i--~~~~~-~v~~~ 157 (498)
.+..+.. .+ .++. ..+...+...+++ .+++++.+.+..+ +++.+ .|.+.
T Consensus 95 ~~d~~gi~f~~l~~~kgpav~~~r~~~Dr-----------~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~ 163 (651)
T 3ces_A 95 AIDQAGIQFRILNASKGPAVRATRAQADR-----------VLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQ 163 (651)
T ss_dssp HHHHHEEEEEEESTTSCGGGCEEEEEECH-----------HHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEET
T ss_pred HhhhcccchhhhhcccCcccccchhhCCH-----------HHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEEC
Confidence 0010000 00 1111 1233444555666 5899987777766 44443 56666
Q ss_pred CCceEEEEcCeEEEcCCCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEe
Q 042564 158 DGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLF 231 (498)
Q Consensus 158 ~g~~~~~~~d~liiAtG~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~ 231 (498)
+|. .+.+|.||+|||+.+..+.++|.... .+.+ +| |.++++++..|.++|.+|+.+.
T Consensus 164 dG~--~I~Ad~VVLATGt~s~~~~i~G~~~~-----------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~ 220 (651)
T 3ces_A 164 MGL--KFRAKAVVLTVGTFLDGKIHIGLDNY-----------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK 220 (651)
T ss_dssp TSE--EEEEEEEEECCSTTTCCEEECC----------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred CCC--EEECCEEEEcCCCCccCccccCcccC-----------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence 664 79999999999998887777775421 1233 56 7889999999999999998875
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=143.67 Aligned_cols=171 Identities=22% Similarity=0.268 Sum_probs=101.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhh-----
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDAR----- 96 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~----- 96 (498)
.+|||+|||||+||+.||+.|++.|.+|+|||+ .+ ..+| ..+|.|+.-.+....+...+..+.
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk------~~--~~iG----~~~Cnps~GGia~g~lv~eldalgg~~~~ 93 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVL------NA--DTIG----QMSCNPAIGGIAKGIVVREIDALGGEMGK 93 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEES------CG--GGTT----CCCSCSEEECTTHHHHHHHHHHHTCSHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEe------cc--cccC----CcCccccccccchHHHHHHHHHhhhHHHH
Confidence 469999999999999999999999999999994 11 1222 234544311000001111111110
Q ss_pred ---cCCccccc-----cc-------ccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEEE--eCCEE-EEEeC
Q 042564 97 ---SYGWEVHE-----KI-------DFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKIV--GPNEV-EVTQL 157 (498)
Q Consensus 97 ---~~g~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~i--~~~~~-~v~~~ 157 (498)
..++.+.. .+ ..+. ..+...+...+++ .+++++.+.+..+ +++.+ .|.+.
T Consensus 94 ~~d~~gi~f~~l~~~kGpav~~~r~~~Dr-----------~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~ 162 (637)
T 2zxi_A 94 AIDQTGIQFKMLNTRKGKAVQSPRAQADK-----------KRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTN 162 (637)
T ss_dssp HHHHHEEEEEEESTTSCGGGCEEEEEECH-----------HHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEET
T ss_pred HhhhcccceeecccccCccccchhhhCCH-----------HHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEEC
Confidence 00111000 00 1111 1233444555666 5899987777764 34544 46677
Q ss_pred CCceEEEEcCeEEEcCCCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEee
Q 042564 158 DGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFR 232 (498)
Q Consensus 158 ~g~~~~~~~d~liiAtG~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~ 232 (498)
+|. .+.++.||+|||+.+..+.++|....- +.+ + |+.++++++..|.++|.++..+..
T Consensus 163 dG~--~i~AdaVVLATG~~s~~~~~~G~~~~~-----------~Gr---~-G~~~A~~la~~L~~lG~~v~~l~t 220 (637)
T 2zxi_A 163 LGV--EYKTKAVVVTTGTFLNGVIYIGDKMIP-----------GGR---L-GEPRSEGLSDFYRRFDFPLIRFKT 220 (637)
T ss_dssp TSC--EEECSEEEECCTTCBTCEEEETTEEEE-----------CSB---T-TBCCBCTHHHHHHHTTCCCEEEEE
T ss_pred CCc--EEEeCEEEEccCCCccCceeccceecC-----------CCC---C-CchhHHHHHHHHHhcCCceEEecC
Confidence 765 899999999999988877666653210 112 2 356778999999999988766643
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=9.2e-12 Score=129.32 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=30.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||||||||+||++||+.|++ |.+|+|+||
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk 38 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSK 38 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TSCEEEECS
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CCcEEEEEC
Confidence 35899999999999999999999 999999995
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=117.23 Aligned_cols=159 Identities=17% Similarity=0.205 Sum_probs=111.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCcEEEEeeCCCCCCC--------------------------------------CCH
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM-GSTVDLLFRKELPLRG--------------------------------------FDD 242 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~-g~~V~lv~~~~~~l~~--------------------------------------~~~ 242 (498)
.+|+|||+|++|+.+|..|++. |.+|+++++.+.+... ...
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 4799999999999999999997 9999999998654210 124
Q ss_pred HHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeE-EEEEC---------CC-----eEEEcCEEEEecCCCcCCCCCCcc
Q 042564 243 EMRAVVARNLEG-RGINLHPRTTIKELIKSEEGV-KVITD---------HG-----EEIVADVVLFATGRAPNTKRLNLK 306 (498)
Q Consensus 243 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~-~v~~~---------~g-----~~i~~D~vi~a~G~~p~~~~l~l~ 306 (498)
++...+.+.+.+ .|+++++++.|.++..+++.+ .+.+. ++ .++.+|.||+|+|..++......+
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~ 199 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 199 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHHH
Confidence 455566666765 699999999999998776653 34432 32 579999999999988876532111
Q ss_pred ---cCC--ceeCCCCCeEcCC-------CCCCCCCCeEEecccCCC-------CCChHHHHHHHHHHHHHHhC
Q 042564 307 ---AVG--VEVDQTGAVKVDE-------NSRTNVPSIWAVGDVTNR-------MNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 307 ---~~g--i~~~~~g~i~vd~-------~~~t~~~~iya~GD~~~~-------~~~~~~A~~~g~~aa~~i~~ 360 (498)
..+ +.+.....+.++. ..+|+.|++|++||++.. .+.+..+..+|+.+|.++..
T Consensus 200 ~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~ 272 (284)
T 1rp0_A 200 RLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALK 272 (284)
T ss_dssp HHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred HhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHH
Confidence 111 1111122343332 345678999999998731 23567888999999999864
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-11 Score=125.35 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCC--CcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFG--AKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lvek 54 (498)
++||||||||+||+++|+.|++.| .+|+||||
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk 38 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISK 38 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 489999999999999999999999 99999995
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.8e-10 Score=110.05 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCC--eEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHG--EEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g--~~i~~D~vi~a~G~~p 298 (498)
+..+.+.+.+.+++.|++++++++|+++..++++ +.|.+.+| .++.+|.||+|+|...
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s 209 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA 209 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence 4578888899999999999999999999987665 77888887 4799999999999864
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-12 Score=133.50 Aligned_cols=174 Identities=18% Similarity=0.165 Sum_probs=100.9
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhc-
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARS- 97 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~- 97 (498)
.+..+|||+|||||+||++||+.|++.|.+|+|+|+ .+ ..+|+ .+|.|+.-.+........+..+..
T Consensus 17 ~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk------~~--~~iG~----~~c~ps~gGia~~~lv~el~al~g~ 84 (641)
T 3cp8_A 17 RGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITS------DL--SAVAR----MSCNPAIGGVAKGQITREIDALGGE 84 (641)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEES------CG--GGTTC----CSSCSEEECHHHHHHHHHHHHHTCS
T ss_pred cccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEe------cc--cccCC----CccccchhhhhHHHHHHHHHhcccH
Confidence 344569999999999999999999999999999994 11 12332 345443211111111111111110
Q ss_pred -------CCccccc-----cc-------ccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEEE--eCCEEE-E
Q 042564 98 -------YGWEVHE-----KI-------DFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKIV--GPNEVE-V 154 (498)
Q Consensus 98 -------~g~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~i--~~~~~~-v 154 (498)
.+..+.. .+ ..+.. .+...+...+++ .+++++.+.+..+ +.+.+. |
T Consensus 85 ~~~~~d~~gi~f~~l~~~kgpav~~~r~~~Dr~-----------~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV 153 (641)
T 3cp8_A 85 MGKAIDATGIQFRMLNRSKGPAMHSPRAQADKT-----------QYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSV 153 (641)
T ss_dssp HHHHHHHHEEEEEEECSSSCTTTCEEEEEECHH-----------HHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEE
T ss_pred HHHHHHhcCCchhhcccccCccccchhhhcCHH-----------HHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEE
Confidence 0111100 00 11211 223334455555 4899988777654 466665 7
Q ss_pred EeCCCceEEEEcCeEEEcCCCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEe
Q 042564 155 TQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLF 231 (498)
Q Consensus 155 ~~~~g~~~~~~~d~liiAtG~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~ 231 (498)
.+.+|. .+.+|.||+|||+.+..+..+|.... . ..++ + |+.++++++..|.+.|.+|..+.
T Consensus 154 ~t~~G~--~i~Ad~VVLATG~~s~~~i~~G~~~~---------~--~g~~--v-G~~~a~~la~~L~~~G~kv~~l~ 214 (641)
T 3cp8_A 154 TVRSGR--AIQAKAAILACGTFLNGLIHIGMDHF---------P--GGRS--T-AEPPVEGLTESLASLGFSFGRLK 214 (641)
T ss_dssp EETTSC--EEEEEEEEECCTTCBTCEEEETTEEE---------E--CSSS--T-TSCCBCSHHHHHHHTTCCEEEEE
T ss_pred EECCCc--EEEeCEEEECcCCCCCccceeeeeee---------c--cccc--c-CCchhhhhHHHHHhCCceEEeec
Confidence 777765 89999999999998765443332211 0 0111 1 35678899999999999987654
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-10 Score=121.35 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhC------CCcEEEEccC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF------GAKVGICELP 55 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~------g~~V~lvek~ 55 (498)
.++||||||||+||++||+.|++. |.+|+||||.
T Consensus 21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~ 60 (662)
T 3gyx_A 21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA 60 (662)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence 468999999999999999999997 9999999963
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.8e-10 Score=111.83 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
.++.+.+.+.+++.|++++++++|+++..+++++.|.+.+| ++.+|.||+|+|..+.
T Consensus 132 ~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S~ 188 (417)
T 3v76_A 132 KDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKSI 188 (417)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSSC
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCccC
Confidence 45667788888888999999999999998888888888888 7999999999998864
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.1e-10 Score=109.78 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
+..+.+.+.+.+++.|++++++++|.++..+++++.|.+.+| ++.+|.||+|+|..+.
T Consensus 163 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~ 220 (382)
T 1ryi_A 163 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSG 220 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHH
Confidence 467888888999999999999999999987776677777777 7999999999998653
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-08 Score=100.96 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEE-EEECCCeEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-VITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p 298 (498)
...+.+.+.+.+++.|++++.+++|+++..+++.+. |.+.+| ++.+|.||+|+|..+
T Consensus 148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence 456778888889999999999999999988777665 777777 799999999999765
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.9e-09 Score=104.31 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
...+.+.+.+.+++.|++++++++|+++..+++. ..+.+.+| ++.+|.||+|+|...
T Consensus 173 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 173 HDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence 3467888889999999999999999999877655 56777777 699999999999765
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-09 Score=105.57 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCe--EEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~--~i~~D~vi~a~G~~p 298 (498)
..+.+.+.+.+++.|+++++++.|+++..++++ +.+.+.+|+ ++.+|.||.|+|..+
T Consensus 106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR 166 (421)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence 456677777788889999999999999887766 455567887 699999999999876
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-08 Score=108.24 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
...+...+.+.+++.|++++++++|+++..+++++.|.+.+|.++.+|.||+|+|....
T Consensus 416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~ 474 (676)
T 3ps9_A 416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQIS 474 (676)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchh
Confidence 36788888888999999999999999999888888888888888999999999998643
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-08 Score=99.07 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
..+...+.+.+++.|++++++++|+++..+++++.+.+.++ ++.+|.||+|+|..
T Consensus 153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~ 207 (397)
T 2oln_A 153 RGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPY 207 (397)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence 45677788888889999999999999988877777777666 69999999999976
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-09 Score=111.18 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..+.+.+.+.+++.|+++++++.|+++..+++. ..|++.+|+++.+|.||+|+|..+..
T Consensus 220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~~ 279 (549)
T 3nlc_A 220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARD 279 (549)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCHH
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhh
Confidence 567788888899999999999999999887665 45888999999999999999998853
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-09 Score=99.29 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=71.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+|||||++|+.+|..|++.|.+|+|||+ .. ...| . .|.|...-+....+...+.+ ..
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~------~~--~~~G-~----~~~~~~~~~~~~~~~~~~~d--~~---- 63 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQ------SL--DAVM-M----PFLPPKPPFPPGSLLERAYD--PK---- 63 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEES------CG--GGTT-C----CSSCCCSCCCTTCHHHHHCC--TT----
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEec------CC--CcCC-c----ccCccccccchhhHHhhhcc--CC----
Confidence 58999999999999999999999999999994 11 1223 1 12221000000000000000 00
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEE--eCCEE-EEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIV--GPNEV-EVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i--~~~~~-~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
.+ + ...+...+.+.+++. +++++...+..+ +.+.+ .|.+.+|. ++++|.||+|+|..+.
T Consensus 64 --g~--~-----------~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~--~i~a~~VV~A~G~~s~ 126 (232)
T 2cul_A 64 --DE--R-----------VWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGP--PARGEKVVLAVGSFLG 126 (232)
T ss_dssp --CC--C-----------HHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSC--CEECSEEEECCTTCSS
T ss_pred --CC--C-----------HHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCC--EEECCEEEECCCCChh
Confidence 00 0 112334455566665 899886656554 34443 46666765 7999999999998654
Q ss_pred C
Q 042564 179 R 179 (498)
Q Consensus 179 ~ 179 (498)
.
T Consensus 127 ~ 127 (232)
T 2cul_A 127 A 127 (232)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-08 Score=109.19 Aligned_cols=59 Identities=12% Similarity=0.198 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe-EEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE-EIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~ 299 (498)
...+...+.+.+++.|++++++++|+++..+++++.|.+.+|+ ++.+|.||+|+|....
T Consensus 411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~ 470 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLP 470 (689)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchh
Confidence 4678888888899999999999999999988878888888887 7999999999998743
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-08 Score=98.27 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=55.5
Q ss_pred CcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 225 STVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 225 ~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
..+.++.+....+ .+..+.+.+.+.+++.|++++++++|+++..+++++.+.+.+| ++.+|.||+|+|..++
T Consensus 135 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 206 (389)
T 2gf3_A 135 NYNAIFEPNSGVL--FSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNS 206 (389)
T ss_dssp TEEEEEETTCEEE--EHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHH
T ss_pred CceEEEeCCCcEE--eHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHH
Confidence 3455555543322 2357888888999999999999999999988777777777666 6999999999998653
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=4.3e-09 Score=106.91 Aligned_cols=141 Identities=21% Similarity=0.302 Sum_probs=76.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCC-----CccccccccC-chhhHHHHHH---hH-----
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIG-----GVGGTCVIRG-CVPKKILVYG---AS----- 87 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~-----~~GG~~~~~g-~~p~~~l~~~---~~----- 87 (498)
+++||+|||||++|+++|+.|++.|.+|+|+|| .+..+ .-||.|.... +.+...+... ..
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk------~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDK------GNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSA 98 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECS------SSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEEC------CCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHH
Confidence 358999999999999999999999999999995 21111 1123342221 1111111000 00
Q ss_pred -----hhHHHhhhhcCCcccccc---cccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCE-EEEE
Q 042564 88 -----FGGELEDARSYGWEVHEK---IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNE-VEVT 155 (498)
Q Consensus 88 -----~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~-~~v~ 155 (498)
..+.+..+..+|..+... ..+... .....+...+...+++.|++++.++ +..+ +.+. +.|.
T Consensus 99 ~~~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~-------~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~ 171 (447)
T 2i0z_A 99 FSIFNNEDIITFFENLGVKLKEEDHGRMFPVS-------NKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVI 171 (447)
T ss_dssp HHHSCHHHHHHHHHHTTCCEEECGGGEEEETT-------CCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEE
T ss_pred HHhcCHHHHHHHHHhcCCceEEeeCCEEECCC-------CCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEE
Confidence 001111112222221100 000000 0011223344455666899998876 4443 4555 6777
Q ss_pred eCCCceEEEEcCeEEEcCCCCC
Q 042564 156 QLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 156 ~~~g~~~~~~~d~liiAtG~~p 177 (498)
+.+|. .+++|.||+|||..+
T Consensus 172 ~~~G~--~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 172 LQTGE--VLETNHVVIAVGGKS 191 (447)
T ss_dssp ETTCC--EEECSCEEECCCCSS
T ss_pred ECCCC--EEECCEEEECCCCCc
Confidence 77764 699999999999766
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-09 Score=93.46 Aligned_cols=109 Identities=22% Similarity=0.203 Sum_probs=69.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
||++|||||++|+.+|..|++.|.+|+|+|+. + ..+. .+.+ +..++.+ +
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~------~--~~~~-~~~~------------------~~~~~~~--~-- 50 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGG------R--SKVK-GVSR------------------VPNYPGL--L-- 50 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECS------C--CTTT-TCSC------------------CCCSTTC--T--
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCC------C--Cccc-Cchh------------------hhccCCC--c--
Confidence 79999999999999999999999999999941 1 0000 0000 0000000 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
...... .+...+.+.+++.|++++.+.+..++ .+.+.+.+++| ++++|.||+|+|..|..
T Consensus 51 --~~~~~~-----------~~~~~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g---~i~ad~vI~A~G~~~~~ 112 (180)
T 2ywl_A 51 --DEPSGE-----------ELLRRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEG---VEKAERLLLCTHKDPTL 112 (180)
T ss_dssp --TCCCHH-----------HHHHHHHHHHHHTTCEEEECCCCEEEECSSSEEEECSSC---EEEEEEEEECCTTCCHH
T ss_pred --CCCCHH-----------HHHHHHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECCC---EEEECEEEECCCCCCCc
Confidence 001111 12233445566789999988655543 34567777665 78999999999998854
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.6e-09 Score=104.70 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
..+.+.+.+.+.+ ++++++++|+++..+++++.+++.+|+++.+|.||.|.|..+...
T Consensus 127 ~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr 184 (407)
T 3rp8_A 127 AELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALR 184 (407)
T ss_dssp HHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCSSH
T ss_pred HHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChHHH
Confidence 4566777777766 889999999999998888999999999999999999999876553
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.93 E-value=8.6e-09 Score=97.98 Aligned_cols=33 Identities=36% Similarity=0.453 Sum_probs=30.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhC-CCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lvek 54 (498)
.++||+|||||++|+++|+.|++. |.+|+|+|+
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk 71 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQ 71 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEES
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCCeEEEEEC
Confidence 358999999999999999999996 999999995
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-08 Score=106.55 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEe-CCeEEEEEC-CC--eEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKS-EEGVKVITD-HG--EEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~v~~~-~g--~~i~~D~vi~a~G~~p~ 299 (498)
..+.+.+.+.+++.|++++.++.|+++..+ ++...|.+. +| .++.+|.||.|+|..+.
T Consensus 128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~ 189 (591)
T 3i3l_A 128 EEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGP 189 (591)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGCH
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcch
Confidence 456677888888899999999999999865 445777776 66 57999999999998663
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.6e-09 Score=110.13 Aligned_cols=32 Identities=38% Similarity=0.521 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||||||||+||++||+.|++.|.+|+|+||
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk 157 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEK 157 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 58999999999999999999999999999995
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.2e-08 Score=98.62 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCc---cEEEEEEeCCeEE-EEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRT---TIKELIKSEEGVK-VITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~---~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
...+...+.+.+++.|+++++++ +|++|..+++++. |.+.+|+++.+|.||+|+|....
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~ 222 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG 222 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence 35678888899999999999999 9999988877766 88999988999999999997643
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6e-09 Score=107.15 Aligned_cols=137 Identities=18% Similarity=0.085 Sum_probs=77.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
...+||+|||||++|+++|..|++.|.+|+|||+ . ..+| .|...++.|...-... ..........|..
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk------~---~~~g-~~~~~~~~~~~~~~l~--~~g~~~~~~~~~~ 157 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEK------R---IKFS-RHNVLHLWPFTIHDLR--ALGAKKFYGRFCT 157 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES------C---SSCC-CCCEEECCHHHHHHHH--TTTHHHHCTTTTC
T ss_pred cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEe------c---cccC-CCCcccCChhHHHHHH--HcCCccccccccc
Confidence 3468999999999999999999999999999994 2 2222 3333334442211100 0000000111110
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC-----CEEEEEe--C-CCceEEEEcCeEEE
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP-----NEVEVTQ--L-DGTKLSYSAKHILI 171 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~-----~~~~v~~--~-~g~~~~~~~d~lii 171 (498)
. ....++. ..+...+.+.+.+.|++++.++ +..+.. +.+.|.. . +|+...+++|.||+
T Consensus 158 ~--~~~~~~~-----------~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~ 224 (497)
T 2bry_A 158 G--TLDHISI-----------RQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLIS 224 (497)
T ss_dssp T--TCCEEEH-----------HHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEE
T ss_pred c--ccccCCH-----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEE
Confidence 0 0001111 1223344455566799999886 555532 3455554 3 44224689999999
Q ss_pred cCCCCCCCCCC
Q 042564 172 ATGSRAQRAPI 182 (498)
Q Consensus 172 AtG~~p~~p~i 182 (498)
|+|..+.....
T Consensus 225 A~G~~S~~r~~ 235 (497)
T 2bry_A 225 AAGGKFVPEGF 235 (497)
T ss_dssp CCCTTCCCTTC
T ss_pred CCCCCcccccc
Confidence 99988766543
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.7e-08 Score=95.43 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
..+.+.+.+.+++.|++++.+++|+++..+++++.+.+.+|+ +.+|.||+|+|...
T Consensus 149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g~-~~a~~vV~a~G~~s 204 (372)
T 2uzz_A 149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGE-YQAKKAIVCAGTWV 204 (372)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCE-EEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCCe-EEcCEEEEcCCccH
Confidence 467788888889999999999999999887777778887775 99999999999754
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.9e-08 Score=102.52 Aligned_cols=34 Identities=35% Similarity=0.436 Sum_probs=31.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.++||||||||+||++||+.|++.|.+|+||||
T Consensus 39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk 72 (510)
T 4at0_A 39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLER 72 (510)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 3569999999999999999999999999999995
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-09 Score=111.47 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=100.5
Q ss_pred EcCeEEEcCCCCCCCCCCCCCC--cc---cChHHHhcc--------------ccCCCeEEEEcCCHHHHHHHHHHHHCCC
Q 042564 165 SAKHILIATGSRAQRAPIPGQE--LA---ITSDEALSL--------------EELPKRAVVLGGGYIAVEFASIWRGMGS 225 (498)
Q Consensus 165 ~~d~liiAtG~~p~~p~i~g~~--~~---~~~~~~~~l--------------~~~~~~v~ViG~G~~g~e~a~~l~~~g~ 225 (498)
.||++++++|++|..+++.+.+ .+ ....+...+ .....+|+|||||+.|+.+|..|++.|.
T Consensus 37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G~ 116 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGA 116 (497)
T ss_dssp HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCCC
Confidence 4678899999998776554321 11 122222222 1235699999999999999999999999
Q ss_pred cEEEEeeCCCCCCC-----CC----------------------------HHHHHHHHHHHHhCCCEEEcCccEEEEEEe-
Q 042564 226 TVDLLFRKELPLRG-----FD----------------------------DEMRAVVARNLEGRGINLHPRTTIKELIKS- 271 (498)
Q Consensus 226 ~V~lv~~~~~~l~~-----~~----------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~- 271 (498)
+|+++++.+.+... .+ .++.+.+.+.+++.|+++++++.|.++..+
T Consensus 117 ~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~ 196 (497)
T 2bry_A 117 RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPP 196 (497)
T ss_dssp EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCC
T ss_pred eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEec
Confidence 99999987653210 01 456677888888899999999999999864
Q ss_pred --CCeEEEEE--C-CC--eEEEcCEEEEecCCCcCCCC
Q 042564 272 --EEGVKVIT--D-HG--EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 272 --~~~~~v~~--~-~g--~~i~~D~vi~a~G~~p~~~~ 302 (498)
++.+.|++ . +| +++.+|.||.|+|..+....
T Consensus 197 ~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~ 234 (497)
T 2bry_A 197 RKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEG 234 (497)
T ss_dssp STTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTT
T ss_pred CCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccccc
Confidence 23456666 4 56 46899999999999987753
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.2e-09 Score=115.41 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=37.7
Q ss_pred CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 255 RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 255 ~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.|++|++++.|++|..+++++.|++.+|+++.+|.||+|+..
T Consensus 542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~ 583 (776)
T 4gut_A 542 EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL 583 (776)
T ss_dssp TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCH
T ss_pred hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCH
Confidence 378999999999999888888899999989999999999963
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-08 Score=99.24 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEE-EE-CCC--eEEEcCEEEEecCCCcC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKV-IT-DHG--EEIVADVVLFATGRAPN 299 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v-~~-~~g--~~i~~D~vi~a~G~~p~ 299 (498)
.+.+.+.+...+.|+++++++.+..+..+++.+.. .. .++ .++.+|.||-|.|..+.
T Consensus 103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~ 163 (397)
T 3oz2_A 103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESE 163 (397)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTCH
T ss_pred HHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCccccH
Confidence 45566777777889999999999999887776432 22 233 36889999999997654
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=3.2e-08 Score=103.53 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||||||||++|+++|+.|++.|.+|+||||
T Consensus 120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk 152 (566)
T 1qo8_A 120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDK 152 (566)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 468999999999999999999999999999995
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.7e-08 Score=96.81 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
...+...+.+.+++.|++++++++|+++..+++++.|.+.+| ++.+|.||+|+|...
T Consensus 153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence 356788888999999999999999999998888888888777 799999999999754
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-08 Score=103.22 Aligned_cols=33 Identities=45% Similarity=0.582 Sum_probs=31.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~ 38 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLER 38 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEcc
Confidence 358999999999999999999999999999995
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.80 E-value=5e-09 Score=100.93 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=38.9
Q ss_pred CccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCchhh
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPK 79 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~ 79 (498)
+|||+|||||++|+++|+.|++. |.+|+|+|+ ...+||.|...++.+.
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk---------~~~~GGg~~~~g~~~~ 128 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEA---------GVAPGGGAWLGGQLFS 128 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEES---------SSSCCTTTTCCBTTCC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeC---------CCccCCccccCCccch
Confidence 58999999999999999999996 999999995 3345666655555543
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-07 Score=103.99 Aligned_cols=57 Identities=25% Similarity=0.280 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEECCCeEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+..+...+.+.+++.|++++++++|++|..+++.+ .|.+.+| ++.+|.||+|+|...
T Consensus 150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence 45788888999999999999999999998877664 5777777 799999999999754
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.2e-08 Score=98.95 Aligned_cols=58 Identities=7% Similarity=0.116 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEECCCeEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
..+.+.+.+.+++.|++|+++++|++|..+++++ .|++++|+++.||.||.+++....
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~ 279 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHT 279 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC----
T ss_pred cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHH
Confidence 5688889999999999999999999999888874 588999999999999998876543
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.5e-08 Score=96.46 Aligned_cols=32 Identities=28% Similarity=0.186 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~ 42 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEK 42 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEec
Confidence 58999999999999999999999999999995
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-08 Score=102.07 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEE---------------eCCe-EEEEECCCeEE--EcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIK---------------SEEG-VKVITDHGEEI--VADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~---------------~~~~-~~v~~~~g~~i--~~D~vi~a~G~~p 298 (498)
..+.+.+.+.+++.|++++++++|+++.. ++++ ..|.+.+| ++ .+|.||+|+|...
T Consensus 181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s 254 (448)
T 3axb_A 181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS 254 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence 47888899999999999999999999987 4444 35777777 58 9999999999754
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-07 Score=95.18 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEE-EEECCCeEEEcCEEEEecCCCcCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-VITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
..+.+.+.+.+++.|++++++++|++|..+++++. |.+ +|+++.+|.||+|+|......
T Consensus 196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~~~ 255 (425)
T 3ka7_A 196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAATAV 255 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHHHH
Confidence 45777788889999999999999999998877754 655 477899999999999754433
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=101.07 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
...+.+.+.+.+++.|++++++++|++|..+++++ | ..+|+++.+|.||+|+|.....
T Consensus 188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~ 245 (421)
T 3nrn_A 188 CKAVIDELERIIMENKGKILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRETV 245 (421)
T ss_dssp HHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHHH
Confidence 46788999999999999999999999998777777 4 5677889999999999975443
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-07 Score=91.76 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=81.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC---------------------CCCC--C---------HHHHHHHH
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP---------------------LRGF--D---------DEMRAVVA 249 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~---------------------l~~~--~---------~~~~~~l~ 249 (498)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++.+ + .++.+.+.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 37999999999999999999999999999987642 1111 0 57888888
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEE-EEECCCeEEEcCEEEEecCCCc
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVK-VITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+.+++.|++++++++|.++..+++.+. |.+.+| ++.+|.||+|+|..+
T Consensus 84 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~ 132 (357)
T 4a9w_A 84 QYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWG 132 (357)
T ss_dssp HHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGG
T ss_pred HHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCC
Confidence 889999999999999999998888877 888777 799999999999643
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.71 E-value=4.2e-08 Score=103.02 Aligned_cols=34 Identities=32% Similarity=0.452 Sum_probs=31.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.++||||||||+||++||+.|++.|.+|+|+||
T Consensus 16 ~~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK 49 (621)
T 2h88_A 16 DHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTK 49 (621)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence 3468999999999999999999999999999995
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-08 Score=95.32 Aligned_cols=41 Identities=27% Similarity=0.435 Sum_probs=36.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
.+||+||||||||++||+.|++.|++|+|+|| ...+||.+.
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek---------~~~~GG~~~ 42 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDK---------SRGSGGRMS 42 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCGGGC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC---------CCCCCCccc
Confidence 48999999999999999999999999999995 445677763
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=7.4e-08 Score=100.90 Aligned_cols=32 Identities=38% Similarity=0.560 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||||||||+||++||+.|++.|.+|+|+||
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK 38 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSK 38 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence 58999999999999999999999999999995
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.9e-07 Score=96.24 Aligned_cols=32 Identities=38% Similarity=0.509 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~ 157 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEK 157 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 57999999999999999999999999999995
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.8e-07 Score=91.96 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=32.0
Q ss_pred CCCCCccccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 11 LSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 11 ~~~~~~~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...+++|..| ..+||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 15 ~~~~~~M~~~-~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 57 (398)
T 2xdo_A 15 VPRGSHMNLL-SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYER 57 (398)
T ss_dssp --------CC-TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCccccccc-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeC
Confidence 3344455443 358999999999999999999999999999995
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-07 Score=94.55 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGR-GINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..+.+.+.+.+++. ||+++++ +|+++..++++ ..|.+.+|+++.+|.||.|+|..+..
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence 45778888888888 9999999 99999875544 67888889889999999999988765
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-07 Score=96.15 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=31.0
Q ss_pred CCccEEEECCChhHHHHHHHHHh---CCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN---FGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek 54 (498)
..+||+|||||++|+++|+.|++ .|.+|+|||+
T Consensus 4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~ 39 (538)
T 2aqj_A 4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIES 39 (538)
T ss_dssp BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECC
Confidence 35899999999999999999999 9999999994
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-07 Score=89.26 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=82.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC--CCC--------CCCC----CHHHHHHHHHHHHhCCCEEEcCccEEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK--ELP--------LRGF----DDEMRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~--~~~--------l~~~----~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
.+|+|||+|+.|+.+|..|.+.|.+|+++++. ..+ .+.+ ..++.+.+.+.+++.|++++. ..|.+
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~ 94 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK 94 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence 58999999999999999999999999999985 100 1222 256778888888889999999 89999
Q ss_pred EEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 268 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+..+++.+.+.+.+++++.+|.+|+|+|..|....
T Consensus 95 i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~ 129 (323)
T 3f8d_A 95 IENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLG 129 (323)
T ss_dssp EEEC--CEEEEESSSCEEEEEEEEECCCCEECCCC
T ss_pred EEecCCEEEEEECCCCEEEcCEEEECcCCCCccCC
Confidence 98877778888888889999999999999877653
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.3e-07 Score=95.99 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=31.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhC------CCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF------GAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~------g~~V~lvek 54 (498)
++|||+||||||||+++|+.|++. |.+|+|+||
T Consensus 34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk 72 (584)
T 2gmh_A 34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEK 72 (584)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECS
T ss_pred cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeC
Confidence 358999999999999999999998 999999995
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.6e-07 Score=86.86 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=80.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC---------------CCC----CHHHHHHHHHHHHhCCCEEEcC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL---------------RGF----DDEMRAVVARNLEGRGINLHPR 262 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l---------------~~~----~~~~~~~l~~~l~~~Gv~i~~~ 262 (498)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ ..++...+.+.+++.+++++++
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG 85 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence 579999999999999999999999999999876430 111 2567777888888889999999
Q ss_pred ccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 263 TTIKELIKSEEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 263 ~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
+.|..+..+++.+.+.+.+|+++.+|.+|+|+|..
T Consensus 86 ~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 86 ERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp CCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred CEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence 99999988776777888888889999999999984
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.7e-07 Score=91.05 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~ 37 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQ 37 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 48999999999999999999999999999995
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=96.35 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~ 37 (453)
T 3atr_A 5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDS 37 (453)
T ss_dssp EECSEEEECCSHHHHHHHHHHSSSSCCEEEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC
Confidence 358999999999999999999999999999995
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-07 Score=89.76 Aligned_cols=100 Identities=14% Similarity=0.191 Sum_probs=83.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC---------------CCC----CHHHHHHHHHHHHhCCCEEEcC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL---------------RGF----DDEMRAVVARNLEGRGINLHPR 262 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l---------------~~~----~~~~~~~l~~~l~~~Gv~i~~~ 262 (498)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++...+.+.+++.|++++++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE 87 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence 579999999999999999999999999999976321 111 3567788888888889999999
Q ss_pred ccEEEEEEeCC-eEEEEECCCeEEEcCEEEEecCC---CcCCCC
Q 042564 263 TTIKELIKSEE-GVKVITDHGEEIVADVVLFATGR---APNTKR 302 (498)
Q Consensus 263 ~~v~~i~~~~~-~~~v~~~~g~~i~~D~vi~a~G~---~p~~~~ 302 (498)
+.|.++..+++ .+.+.+.+|+ +.+|.+|+|+|. .|....
T Consensus 88 ~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~ 130 (332)
T 3lzw_A 88 QAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLE 130 (332)
T ss_dssp CCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCC
T ss_pred CEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCC
Confidence 99999988776 5788888886 999999999999 676543
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-07 Score=91.39 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHh---CCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSAN---FGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek 54 (498)
+||+|||||++|+++|+.|++ .|.+|+|+||
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek 35 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDK 35 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEEC
Confidence 699999999999999999999 9999999995
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.2e-07 Score=85.26 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=81.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC---------CCC----CCHHHHHHHHHHHHhC-CCEEEcCccEEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP---------LRG----FDDEMRAVVARNLEGR-GINLHPRTTIKE 267 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~---------l~~----~~~~~~~~l~~~l~~~-Gv~i~~~~~v~~ 267 (498)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.. ++. ...++...+.+.+++. +++++.. +|..
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~ 81 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD 81 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence 47999999999999999999999999999974321 111 1246777788888876 7888755 8999
Q ss_pred EEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 268 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+..+++...+.+.+|+++.+|.+|+|+|..|....
T Consensus 82 i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~ 116 (297)
T 3fbs_A 82 AKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPE 116 (297)
T ss_dssp EEEETTEEEEEETTSCEEEEEEEEECCCCEEECCC
T ss_pred EEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCC
Confidence 98888788899999989999999999999887643
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=7.3e-07 Score=85.55 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=81.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCC-----------CCCCC-----CHHHHHHHHHHHHhCCCEEEcCccE
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKEL-----------PLRGF-----DDEMRAVVARNLEGRGINLHPRTTI 265 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~-----------~l~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v 265 (498)
+|+|||+|+.|+.+|..|.+.|. +|+++++... ..+.+ ..++.+.+.+.+++.|++++. ..+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v 81 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV 81 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence 68999999999999999999999 9999998531 01211 246777788888889999998 689
Q ss_pred EEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 266 KELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 266 ~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
..+..+++.+.+.+.+|+++.+|.+|+|+|..|....
T Consensus 82 ~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~ 118 (311)
T 2q0l_A 82 QRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTG 118 (311)
T ss_dssp EEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCC
T ss_pred EEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCC
Confidence 9998877777787888889999999999998886643
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.56 E-value=4e-07 Score=90.64 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 33 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECS
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCCEEEEeC
Confidence 47999999999999999999999999999994
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=93.04 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||||||||+||++||+.|++.|.+|+||||
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK 36 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSL 36 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred cccEEEECchHHHHHHHHHHHHCCCcEEEEec
Confidence 58999999999999999999999999999995
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.7e-07 Score=93.44 Aligned_cols=33 Identities=39% Similarity=0.659 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||+||||||+|+++|+.|++.|.+|+|||+
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr 36 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVER 36 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeC
Confidence 458999999999999999999999999999995
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-07 Score=93.83 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHhC--CCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF--GAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek 54 (498)
++||+|||||++|+++|+.|++. |.+|+|||+
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~ 69 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEE 69 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 48999999999999999999998 999999994
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.1e-07 Score=95.78 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+++||+||||||+|+++|+.|++.|.+|+|||+
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr 80 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEK 80 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcC
Confidence 358999999999999999999999999999995
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.2e-07 Score=94.05 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECC---C--eEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDH---G--EEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~---g--~~i~~D~vi~a~G~~p 298 (498)
+..+...+.+.+++.|++++++++|+++..++++ ..|.+.+ | ..+.+|.||.|+|...
T Consensus 169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 169 DARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 4677888888889999999999999999988776 3455542 3 3689999999999754
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-07 Score=95.85 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=32.6
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+++++||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~ 42 (500)
T 2qa1_A 7 HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLER 42 (500)
T ss_dssp -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeC
Confidence 345568999999999999999999999999999995
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=85.98 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=81.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------C--------CCC----CHHHHHHHHHHHHhCCCEEEcC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------L--------RGF----DDEMRAVVARNLEGRGINLHPR 262 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l--------~~~----~~~~~~~l~~~l~~~Gv~i~~~ 262 (498)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+ . +.+ ..++.+.+.+.+++.|++++++
T Consensus 15 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 94 (360)
T 3ab1_A 15 RDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVLN 94 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEcC
Confidence 58999999999999999999999999999987542 1 111 1567777888888889999999
Q ss_pred ccEEEEEEeCC-eEEEEECCCeEEEcCEEEEecCCCc
Q 042564 263 TTIKELIKSEE-GVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 263 ~~v~~i~~~~~-~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+.|..+..+++ .+.|.+.+|+++.+|.+|+|+|..+
T Consensus 95 ~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~ 131 (360)
T 3ab1_A 95 ETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGA 131 (360)
T ss_dssp CCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred CEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence 99999987665 5778888888899999999999854
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.6e-07 Score=87.90 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=83.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC----CC------------CCCC-----CHHHHHHHHHHHHhCCCEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE----LP------------LRGF-----DDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~----~~------------l~~~-----~~~~~~~l~~~l~~~Gv~i 259 (498)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+ .+ ++.+ ..++...+.+.+++.|+++
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i 101 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI 101 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence 4689999999999999999999999999999843 11 1122 3478888889999999999
Q ss_pred EcCccEEEEEEeCCeEEEEE---CCCeEEEcCEEEEecCCCcCCCC
Q 042564 260 HPRTTIKELIKSEEGVKVIT---DHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~~~v~~---~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+.++ +.++..+++.+.+.+ .++..+.+|.+|+|+|.+|....
T Consensus 102 ~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~ 146 (338)
T 3itj_A 102 ITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMH 146 (338)
T ss_dssp ECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCC
T ss_pred EEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCC
Confidence 9997 999987777777777 36678999999999999887654
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.8e-07 Score=90.67 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=30.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCc-EEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAK-VGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~-V~lvek 54 (498)
+..+||+|||||++|+++|+.|++.|.+ |+|+|+
T Consensus 2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~ 36 (410)
T 3c96_A 2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLES 36 (410)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEEC
Confidence 3458999999999999999999999999 999995
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=4.6e-07 Score=90.36 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 36 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYER 36 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 57999999999999999999999999999995
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-06 Score=86.71 Aligned_cols=97 Identities=19% Similarity=0.236 Sum_probs=80.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-----------------------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG----------------------------------------- 239 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~----------------------------------------- 239 (498)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 358999999999999999999999999999987654210
Q ss_pred ---CC-----------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 240 ---FD-----------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 240 ---~~-----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
++ ..+.+.+.+.+++.|++++++++|.++.. ++ .|++.+|+++.+|.||.|+|..+..
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~-~v~~~~g~~~~ad~vV~AdG~~s~v 162 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG-RLTLQTGEVLEADLIVGADGVGSKV 162 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT-EEEETTSCEEECSEEEECCCTTCHH
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC-EEEECCCCEEEcCEEEECCCccHHH
Confidence 00 34567778888888999999999999976 34 7888889899999999999988754
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=87.55 Aligned_cols=98 Identities=10% Similarity=0.157 Sum_probs=80.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC--------------C---C-------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL--------------R---G------------------------- 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l--------------~---~------------------------- 239 (498)
.+|+|||+|+.|+.+|..+++.|.+|+++++.+.+. . .
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence 369999999999999999999999999999876430 0 0
Q ss_pred ----------------------CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe----CCeEEEEECCCeEEEcCEEEEe
Q 042564 240 ----------------------FDDEMRAVVARNLEGRGINLHPRTTIKELIKS----EEGVKVITDHGEEIVADVVLFA 293 (498)
Q Consensus 240 ----------------------~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~----~~~~~v~~~~g~~i~~D~vi~a 293 (498)
...++.+.+.+.+++.||++++++.|+++..+ ++.+.|.+.++ ++.+|.||+|
T Consensus 85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlA 163 (401)
T 2gqf_A 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVA 163 (401)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEEC
T ss_pred HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEEC
Confidence 12445567788888899999999999999866 45577777776 7999999999
Q ss_pred cCCCcCC
Q 042564 294 TGRAPNT 300 (498)
Q Consensus 294 ~G~~p~~ 300 (498)
+|..+..
T Consensus 164 tG~~s~p 170 (401)
T 2gqf_A 164 TGGLSMP 170 (401)
T ss_dssp CCCSSCG
T ss_pred CCCccCC
Confidence 9998854
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=90.43 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=37.5
Q ss_pred HhHHHHHHHHh-CCcEEEEeEEEEEe--CC--EEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 124 LNGIYKRLLSN-AGVKLYEGEGKIVG--PN--EVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 124 ~~~~~~~~~~~-~gv~~~~~~~~~i~--~~--~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+...+.+.+.+ .|++++.+++..+. .+ .+.|.+.+|. ++++|.||.|+|.....
T Consensus 177 l~~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~--~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 177 FSQLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNG--EISGQLFIDCTGAKSLL 235 (526)
T ss_dssp HHHHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSC--EEECSEEEECSGGGCCC
T ss_pred HHHHHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCC--EEEcCEEEECCCcchHH
Confidence 34445555666 79999998766553 22 2456666665 69999999999976554
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=8.7e-08 Score=91.78 Aligned_cols=33 Identities=39% Similarity=0.419 Sum_probs=30.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhC--CCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF--GAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek 54 (498)
.++||+|||||++|+++|+.|++. |.+|+|+|+
T Consensus 64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~ 98 (326)
T 2gjc_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIES 98 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECS
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 357999999999999999999997 999999995
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.4e-06 Score=90.44 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=31.7
Q ss_pred CCCccEEEECCChhHHHHHHHHH---h-CCCcEEEEccC
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSA---N-FGAKVGICELP 55 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~---~-~g~~V~lvek~ 55 (498)
..++||||||||+||++||+.|+ + .|.+|+||||.
T Consensus 20 ~~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~ 58 (643)
T 1jnr_A 20 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA 58 (643)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred eccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCc
Confidence 34689999999999999999999 6 89999999964
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-06 Score=86.99 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=77.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC---CCCH---------HHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR---GFDD---------EMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~---~~~~---------~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
-+|+|||+|+.|+.+|..|...+.+|+++++.+.+.- .+.. ++.....+.+++.||+++++++|.+|.
T Consensus 10 ~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id 89 (385)
T 3klj_A 10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSID 89 (385)
T ss_dssp CSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEE
T ss_pred CCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEE
Confidence 4799999999999999999778899999998775311 0111 111123466778899999999999997
Q ss_pred EeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 270 KSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 270 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+.. .|++++|+++.+|.+|+|||.+|....
T Consensus 90 ~~~~--~v~~~~g~~~~yd~lvlAtG~~p~~p~ 120 (385)
T 3klj_A 90 PNNK--LVTLKSGEKIKYEKLIIASGSIANKIK 120 (385)
T ss_dssp TTTT--EEEETTSCEEECSEEEECCCEEECCCC
T ss_pred CCCC--EEEECCCCEEECCEEEEecCCCcCCCC
Confidence 6554 577889999999999999999887654
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-06 Score=83.81 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=78.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCC------C------CC-CC----------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKE------L------PL-RG---------------------------- 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~------~------~l-~~---------------------------- 239 (498)
.+|+|||+|+.|+.+|..|++.|. +|+++++.+ . ++ +.
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 84 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH 84 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence 379999999999999999999999 999999874 0 00 00
Q ss_pred CC-HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 240 FD-DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 240 ~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.. ..+...+.+.+++.|+++++++.|.++..+++...|.+.++ ++.+|.||+|+|..+..
T Consensus 85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~p 145 (369)
T 3d1c_A 85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNFP 145 (369)
T ss_dssp CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTSB
T ss_pred CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCcc
Confidence 01 34556667777888999999999999987766677887777 58999999999997653
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=83.33 Aligned_cols=99 Identities=18% Similarity=0.206 Sum_probs=79.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-----------CCCCC-----CHHHHHHHHHHHHhCCCEEEcCccE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-----------PLRGF-----DDEMRAVVARNLEGRGINLHPRTTI 265 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-----------~l~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v 265 (498)
.+|+|||+|+.|+.+|..|++.|.+|+++++... ..+.+ ..++.+.+.+.+++.|++++. ..+
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v 87 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV 87 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence 4799999999999999999999999999998721 01222 246777788888889999988 588
Q ss_pred EEEEEe--CCe-EEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 266 KELIKS--EEG-VKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 266 ~~i~~~--~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
.++..+ ++. +.+.+.+|+++.+|.+|+|+|..|...
T Consensus 88 ~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~ 126 (325)
T 2q7v_A 88 QGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKL 126 (325)
T ss_dssp EEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCC
T ss_pred EEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCC
Confidence 888776 443 566777888899999999999987654
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-06 Score=87.11 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=81.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-------------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR------------------------------------------- 238 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~------------------------------------------- 238 (498)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-.
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~ 86 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL 86 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence 4799999999999999999999999999998754300
Q ss_pred --C---------------CCHHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeE--EEEECCCeEEEcCEEEEecCCCc
Q 042564 239 --G---------------FDDEMRAVVARNLEGR-GINLHPRTTIKELIKSEEGV--KVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 239 --~---------------~~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~--~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
. ....+.+.+.+.+++. |++++++++|+++..+++++ .+++.+|+++.+|.||.|+|..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s 166 (399)
T 2x3n_A 87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIAS 166 (399)
T ss_dssp EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCCh
Confidence 0 0124556677777777 99999999999998887777 88899998999999999999877
Q ss_pred CC
Q 042564 299 NT 300 (498)
Q Consensus 299 ~~ 300 (498)
..
T Consensus 167 ~v 168 (399)
T 2x3n_A 167 YV 168 (399)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=83.59 Aligned_cols=99 Identities=13% Similarity=0.137 Sum_probs=79.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC--CC--------CCC----CCHHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE--LP--------LRG----FDDEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~--~~--------l~~----~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
+|+|||+|+.|+.+|..|.+.|.+|+++++.. .. +.. ..+++.+.+.+.+++.|++++.++++..+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 82 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence 68999999999999999999999999996531 00 011 12467778888888899999999999999
Q ss_pred EEeC---CeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 269 IKSE---EGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 269 ~~~~---~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
..+. +...+.+++|+++.+|.+|+|+|.+|...
T Consensus 83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~ 118 (310)
T 1fl2_A 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNM 118 (310)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred EecccCCceEEEEECCCCEEEeCEEEECcCCCcCCC
Confidence 7543 25778888888899999999999987654
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=6.5e-06 Score=84.62 Aligned_cols=32 Identities=38% Similarity=0.386 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||+|||||++|+++|+.|++.|++|+|+|+
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~ 34 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEA 34 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEEC
Confidence 58999999999999999999999999999995
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-06 Score=87.49 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~ 43 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQ 43 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC
Confidence 458999999999999999999999999999995
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.7e-06 Score=87.75 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=79.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC--cEEEEeeCCCCC-----CC----------------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGS--TVDLLFRKELPL-----RG---------------------------------- 239 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv~~~~~~l-----~~---------------------------------- 239 (498)
..+|+|||+|+.|+.+|..|.+.|. +|+++++.+.+. ..
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 85 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence 4689999999999999999999999 999999875320 00
Q ss_pred -------------C--------------CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECC---Ce---EEE
Q 042564 240 -------------F--------------DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH---GE---EIV 286 (498)
Q Consensus 240 -------------~--------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~---g~---~i~ 286 (498)
+ ...+.+.+.+.+++.+..++++++|.++..+++...|++.+ |+ ++.
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~ 165 (447)
T 2gv8_A 86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDI 165 (447)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEE
T ss_pred hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEE
Confidence 0 02455666676766678899999999998887777777654 66 799
Q ss_pred cCEEEEecCC--CcCCC
Q 042564 287 ADVVLFATGR--APNTK 301 (498)
Q Consensus 287 ~D~vi~a~G~--~p~~~ 301 (498)
+|.||+|+|. .|+..
T Consensus 166 ~d~VVvAtG~~s~p~~p 182 (447)
T 2gv8_A 166 FDAVSICNGHYEVPYIP 182 (447)
T ss_dssp ESEEEECCCSSSSBCBC
T ss_pred eCEEEECCCCCCCCCCC
Confidence 9999999998 66554
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-06 Score=85.09 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=79.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEee----CCCC------------CCCC-----CHHHHHHHHHHHHhCCCEEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFR----KELP------------LRGF-----DDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~----~~~~------------l~~~-----~~~~~~~l~~~l~~~Gv~i~ 260 (498)
.+|+|||+|+.|+.+|..|++.|.+|+++++ ...+ .+.+ ..++...+.+.+++.|++++
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 88 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF 88 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4799999999999999999999999999998 2111 1111 24677778888888999999
Q ss_pred cCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 261 PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.++ +..+..+++.+.+.+ +++++.+|.+|+|+|.+|....
T Consensus 89 ~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~ 128 (333)
T 1vdc_A 89 TET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLS 128 (333)
T ss_dssp CCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCC
T ss_pred EeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCC
Confidence 986 888877666677777 7788999999999999876643
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-07 Score=97.08 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
..+.+.+.+.+.+.|++++++++|++|..+++ .+++.+|+++.+|.||.++..
T Consensus 222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~--~v~~~~G~~~~ad~vI~t~P~ 274 (513)
T 4gde_A 222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNK--TVTLQDGTTIGYKKLVSTMAV 274 (513)
T ss_dssp HHHHHHHHHTSCGGGEEESGGGCEEEEETTTT--EEEETTSCEEEEEEEEECSCH
T ss_pred HHHHHHHHHHHHhcCeeeecceEEEEEEccCC--EEEEcCCCEEECCEEEECCCH
Confidence 45677777888888999999999999976655 466889999999999998764
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3e-06 Score=89.78 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=33.6
Q ss_pred cccCCCCccEEEECCChhHHHHHHHHHh-CCCcEEEEcc
Q 042564 17 EEQTHFDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL 54 (498)
Q Consensus 17 ~~~~~~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek 54 (498)
|..|..++||+||||||+|+++|+.|++ .|.+|+||||
T Consensus 26 m~~~~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr 64 (639)
T 2dkh_A 26 TEAVPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQ 64 (639)
T ss_dssp CSSCCSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECS
T ss_pred cCCCCCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3344456899999999999999999999 9999999995
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-06 Score=85.27 Aligned_cols=100 Identities=25% Similarity=0.297 Sum_probs=77.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC------CCHHHHHHH--------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG------FDDEMRAVV-------------------------- 248 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~------~~~~~~~~l-------------------------- 248 (498)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+..... +.+...+.+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 458999999999999999999999999999987653211 233222221
Q ss_pred -----------------HHHHHh--CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 249 -----------------ARNLEG--RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 249 -----------------~~~l~~--~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.|.+ .|++++++++|.++..+++++.+++.+|+++.+|.||.|.|..+..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 155 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVV 155 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHH
T ss_pred ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchhH
Confidence 122222 3789999999999998888888999999899999999999987653
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.5e-06 Score=87.26 Aligned_cols=100 Identities=24% Similarity=0.257 Sum_probs=81.8
Q ss_pred CeEEEEcCCHHHHHHHHHHH-HCCCcEEEEeeCCCCC--------CC-------------C----------------CHH
Q 042564 202 KRAVVLGGGYIAVEFASIWR-GMGSTVDLLFRKELPL--------RG-------------F----------------DDE 243 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~-~~g~~V~lv~~~~~~l--------~~-------------~----------------~~~ 243 (498)
.+|+|||+|+.|+.+|..|+ +.|.+|+++++.+.+. +. + .++
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e 88 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE 88 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence 37999999999999999999 9999999999965321 00 1 235
Q ss_pred HHHHHHHHHHhCCC--EEEcCccEEEEEEeCC--eEEEEECCCeEEEcCEEEEecCC--CcCCC
Q 042564 244 MRAVVARNLEGRGI--NLHPRTTIKELIKSEE--GVKVITDHGEEIVADVVLFATGR--APNTK 301 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~D~vi~a~G~--~p~~~ 301 (498)
+.+.+.+.+++.|+ .+++++.|.++..+++ ...|++.+|+++.+|.||+|+|. .|...
T Consensus 89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p 152 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFP 152 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCC
T ss_pred HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCC
Confidence 77778888888898 8999999999987766 57888999999999999999994 55543
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=89.55 Aligned_cols=100 Identities=24% Similarity=0.286 Sum_probs=81.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC---------------C------CC----------------CHHH
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL---------------R------GF----------------DDEM 244 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l---------------~------~~----------------~~~~ 244 (498)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .+ .+++
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei 101 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI 101 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence 479999999999999999999999999999865321 0 01 1467
Q ss_pred HHHHHHHHHhCCC--EEEcCccEEEEEEeCC--eEEEEECCCeEEEcCEEEEecC--CCcCCC
Q 042564 245 RAVVARNLEGRGI--NLHPRTTIKELIKSEE--GVKVITDHGEEIVADVVLFATG--RAPNTK 301 (498)
Q Consensus 245 ~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~D~vi~a~G--~~p~~~ 301 (498)
.+.+.+.+++.|+ .++++++|.++..+++ ...|++.+|+++.+|.||+|+| ..|...
T Consensus 102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p 164 (549)
T 4ap3_A 102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTP 164 (549)
T ss_dssp HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCC
T ss_pred HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCC
Confidence 7778888888888 8999999999987665 5788899999999999999999 555544
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.3e-07 Score=93.11 Aligned_cols=57 Identities=21% Similarity=0.095 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEe--CCeE-EEEECCCeEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKS--EEGV-KVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~-~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
..+.+.+.+.+++.|++++++++|++|..+ ++++ .|.+ +|+++.||.||+++|..|.
T Consensus 242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence 468888999999999999999999999887 5553 4555 5788999999999998765
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.5e-07 Score=91.65 Aligned_cols=98 Identities=17% Similarity=0.254 Sum_probs=77.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHH---CCCcEEEEeeCCCCC--C---------CCCHHHHHHHHHHHHhCCCEEEcCccEEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRG---MGSTVDLLFRKELPL--R---------GFDDEMRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~---~g~~V~lv~~~~~~l--~---------~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
++|+|||||+.|+.+|..|++ .|.+|+++++.+... + ....++...+.+.+++.||+++. ..+..
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~ 83 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ 83 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence 689999999999999999999 799999999987531 1 01223334456778889999985 58999
Q ss_pred EEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 268 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+..+++ .|++.+|+++.+|.+|+|+|.+|+...
T Consensus 84 id~~~~--~V~~~~g~~i~~d~lviAtG~~~~~~~ 116 (437)
T 3sx6_A 84 IDAEAQ--NITLADGNTVHYDYLMIATGPKLAFEN 116 (437)
T ss_dssp EETTTT--EEEETTSCEEECSEEEECCCCEECGGG
T ss_pred EEcCCC--EEEECCCCEEECCEEEECCCCCcCccc
Confidence 876544 577888888999999999999988654
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.9e-07 Score=91.85 Aligned_cols=47 Identities=30% Similarity=0.379 Sum_probs=39.9
Q ss_pred ccCCCCccEEEECCChhHHHHHHHHHhC-CCcEEEEccCCCCCCCCcCCCccccccc
Q 042564 18 EQTHFDFDLFVIGAGSGGVRAARFSANF-GAKVGICELPFHPISSEVIGGVGGTCVI 73 (498)
Q Consensus 18 ~~~~~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lvek~~~~~~~~~~~~~GG~~~~ 73 (498)
.+|+.++||+|||||++|++||..|++. |.+|+|+|+ ...+||.|..
T Consensus 2 ~~m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~---------~~~~GG~~~~ 49 (399)
T 1v0j_A 2 QPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLER---------RPHIGGNAYS 49 (399)
T ss_dssp --CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECS---------SSSSSGGGCE
T ss_pred CcccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeC---------CCCCCCeeee
Confidence 3455679999999999999999999998 999999995 5678998854
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.1e-06 Score=86.09 Aligned_cols=101 Identities=15% Similarity=0.220 Sum_probs=78.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHH---CCCc---EEEEeeCCCCC-------------------------------------C
Q 042564 202 KRAVVLGGGYIAVEFASIWRG---MGST---VDLLFRKELPL-------------------------------------R 238 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~---~g~~---V~lv~~~~~~l-------------------------------------~ 238 (498)
++|+|||+|+.|+.+|..|.+ .|.+ |+++++.+.+. +
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 589999999999999999999 9999 99999875421 0
Q ss_pred CC---------------CHHHHHHHHHHHHhCCCE--EEcCccEEEEEEeCC--eEEEEECC---C--eEEEcCEEEEec
Q 042564 239 GF---------------DDEMRAVVARNLEGRGIN--LHPRTTIKELIKSEE--GVKVITDH---G--EEIVADVVLFAT 294 (498)
Q Consensus 239 ~~---------------~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~--~~~v~~~~---g--~~i~~D~vi~a~ 294 (498)
.+ ..++.+.+.+.+++.|++ +++++.|..+...++ ...|++.+ | .++.+|.||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 00 134666677777778998 999999999987765 55666543 4 468999999999
Q ss_pred C--CCcCCCC
Q 042564 295 G--RAPNTKR 302 (498)
Q Consensus 295 G--~~p~~~~ 302 (498)
| ..|+...
T Consensus 163 G~~s~p~~p~ 172 (464)
T 2xve_A 163 GHFSTPYVPE 172 (464)
T ss_dssp CSSSSBCCCC
T ss_pred CCCCCCccCC
Confidence 9 6776543
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-06 Score=80.69 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=79.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-----------CCCCC----CHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-----------PLRGF----DDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-----------~l~~~----~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
.+|+|||+|+.|+.+|..|++.|.+|+++++... ..+.+ ..++.+.+.+.+++.|++++. ..+.
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~ 95 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVR 95 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEE
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEE
Confidence 4799999999999999999999999999998531 01211 246677788888888999988 6899
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+..+++.+.+.+ +++++.+|.+|+|+|..|....
T Consensus 96 ~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~ 130 (319)
T 3cty_A 96 SIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLG 130 (319)
T ss_dssp EEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCC
T ss_pred EEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCC
Confidence 9987777666766 5567999999999998876543
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.6e-06 Score=79.77 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=72.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC----------CC--CC-CCHHHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL----------PL--RG-FDDEMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~----------~l--~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
.|+|||+|+.|+.+|..+++.|.+|+++++... +. +. ..+++.+...+.+.+.+...+.+..+..+.
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT 87 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence 699999999999999999999999999997531 01 01 224555655566666544444444555555
Q ss_pred EeCC-eEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 270 KSEE-GVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 270 ~~~~-~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
..++ ...+.+.+|+++.+|.+|+|||.+|....
T Consensus 88 ~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~ 121 (304)
T 4fk1_A 88 KQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPS 121 (304)
T ss_dssp ECTTSCEEEEETTCCEEEEEEEEECCCCEEECCS
T ss_pred ecCCCcEEEEECCCCEEEeCEEEEccCCcccccc
Confidence 4443 47888999999999999999999887654
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.4e-06 Score=80.84 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=77.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEE-EeeCCC--------C---CCCCC-----HHHHHHHHHHHHhCCCEEEcCcc
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDL-LFRKEL--------P---LRGFD-----DEMRAVVARNLEGRGINLHPRTT 264 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l-v~~~~~--------~---l~~~~-----~~~~~~l~~~l~~~Gv~i~~~~~ 264 (498)
.+|+|||+|+.|+.+|..|++.|.+|++ +++... . .+.++ .++...+.+.+++.|++++.+ +
T Consensus 5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 83 (315)
T 3r9u_A 5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV-G 83 (315)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC-C
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE-E
Confidence 5899999999999999999999999999 887321 0 12223 578888888899999999998 8
Q ss_pred EEEEEEeC--CeEEEEE-CCCeEEEcCEEEEecCCCcCCCC
Q 042564 265 IKELIKSE--EGVKVIT-DHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 265 v~~i~~~~--~~~~v~~-~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+.++ .++ +.+.+.+ .++ ++.+|.+|+|+|..|....
T Consensus 84 v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~ 122 (315)
T 3r9u_A 84 VEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAG 122 (315)
T ss_dssp EEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCC
T ss_pred EEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCC
Confidence 8888 666 5566423 334 8999999999999887653
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=5.2e-06 Score=84.07 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=80.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-------------------C------------------C----
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR-------------------G------------------F---- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~-------------------~------------------~---- 240 (498)
.+|+|||+|..|+.+|..+++.|.+|+++++.+.+.. . +
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED 106 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence 4799999999999999999999999999998763210 0 0
Q ss_pred --------------------------CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEe
Q 042564 241 --------------------------DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFA 293 (498)
Q Consensus 241 --------------------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a 293 (498)
...+.+.+.+.+++.||+++++++|+++..+++. +.|.+.+|+++.+|.||+|
T Consensus 107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlA 186 (447)
T 2i0z_A 107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIA 186 (447)
T ss_dssp HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEEC
T ss_pred HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEEC
Confidence 1344556777788899999999999999877666 7788888878999999999
Q ss_pred cCCCcC
Q 042564 294 TGRAPN 299 (498)
Q Consensus 294 ~G~~p~ 299 (498)
+|..+.
T Consensus 187 tGg~s~ 192 (447)
T 2i0z_A 187 VGGKSV 192 (447)
T ss_dssp CCCSSS
T ss_pred CCCCcC
Confidence 998773
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-06 Score=81.34 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=79.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-----------CCCCC-----CHHHHHHHHHHHHhCCCEEEcCccE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-----------PLRGF-----DDEMRAVVARNLEGRGINLHPRTTI 265 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-----------~l~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v 265 (498)
.+|+|||+|+.|+.+|..|.+.|.+|+++++... .++.+ .+++.+.+.+.+++.|++++.++ +
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 84 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I 84 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence 4799999999999999999999999999986421 01111 24677778888889999999985 8
Q ss_pred EEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 266 KELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 266 ~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
..+..+++.+.+ +.+++.+.+|.+|+|+|.+|....
T Consensus 85 ~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~~~~~ 120 (320)
T 1trb_A 85 NKVDLQNRPFRL-NGDNGEYTCDALIIATGASARYLG 120 (320)
T ss_dssp EEEECSSSSEEE-EESSCEEEEEEEEECCCEEECCCC
T ss_pred eEEEecCCEEEE-EeCCCEEEcCEEEECCCCCcCCCC
Confidence 888766666666 667788999999999999887653
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.8e-06 Score=85.87 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=30.4
Q ss_pred CccEEEECCChhHHHHHHHHHh---CCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN---FGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek 54 (498)
.+||||||||++|+++|+.|++ .|.+|+|||+
T Consensus 2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~ 36 (511)
T 2weu_A 2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVES 36 (511)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC
T ss_pred cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEec
Confidence 3799999999999999999999 9999999995
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-06 Score=84.04 Aligned_cols=53 Identities=21% Similarity=0.178 Sum_probs=38.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhh
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPK 79 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~ 79 (498)
+||+|||||+||+.||+.|++.|.+|+|+|+..... ......+.+.+.-|.|+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~---tp~h~~d~i~eL~CnpS 54 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRM---TPAHGTDRFAEIVCSNS 54 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSC---CSSCCSSCTTCCCSCCE
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcC---CccccCCCccccccCcC
Confidence 699999999999999999999999999999421100 11122345556666554
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.8e-06 Score=80.84 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=79.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-----------CCCCC-----CHHHHHHHHHHHHhCCCEEEcCcc
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-----------PLRGF-----DDEMRAVVARNLEGRGINLHPRTT 264 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-----------~l~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~ 264 (498)
..+|+|||+|+.|+.+|..|.+.|.+|+++++... .++.+ .+++.+.+.+.+++.|++++.++
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~- 92 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED- 92 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence 35899999999999999999999999999986321 01112 25677778888888999999986
Q ss_pred EEEEEEeCCeEEE-EECCCeEEEcCEEEEecCCCcCCCC
Q 042564 265 IKELIKSEEGVKV-ITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 265 v~~i~~~~~~~~v-~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+..+.. ++...+ .+.+|+++.+|.+|+|+|..|....
T Consensus 93 v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~ 130 (335)
T 2a87_A 93 VESVSL-HGPLKSVVTADGQTHRARAVILAMGAAARYLQ 130 (335)
T ss_dssp EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEECCCC
T ss_pred EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCccCCC
Confidence 888876 444566 7778888999999999999887643
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.4e-06 Score=85.64 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||+||||||+|+++|+.|++.|.+|+|+||
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr 57 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQ 57 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeC
Confidence 58999999999999999999999999999995
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=5.2e-06 Score=86.06 Aligned_cols=100 Identities=22% Similarity=0.148 Sum_probs=79.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC----------------------------------CC---CCHHH
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL----------------------------------RG---FDDEM 244 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l----------------------------------~~---~~~~~ 244 (498)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ..+++
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei 89 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM 89 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence 479999999999999999999999999999975320 00 12567
Q ss_pred HHHHHHHHHhCCC--EEEcCccEEEEEEeCC--eEEEEECCCeEEEcCEEEEecC--CCcCCC
Q 042564 245 RAVVARNLEGRGI--NLHPRTTIKELIKSEE--GVKVITDHGEEIVADVVLFATG--RAPNTK 301 (498)
Q Consensus 245 ~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~D~vi~a~G--~~p~~~ 301 (498)
...+.+.+++.|+ .++++++|.++..+++ ...|++.+|+++.+|.||+|+| ..|...
T Consensus 90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p 152 (545)
T 3uox_A 90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMP 152 (545)
T ss_dssp HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---C
T ss_pred HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCC
Confidence 7777787888787 7899999999976554 4788899999999999999999 566554
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=6.5e-06 Score=78.92 Aligned_cols=99 Identities=21% Similarity=0.257 Sum_probs=78.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC----C------------CCCC-----CHHHHHHHHHHHHhCCCEEEc
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL----P------------LRGF-----DDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~----~------------l~~~-----~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
.|+|||+|+.|+.+|..++++|.+|+++++... + ++.+ .+++...+.+.+++.++++..
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT 85 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence 699999999999999999999999999987541 0 0111 256777888888899999876
Q ss_pred CccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 262 RTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 262 ~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
. .+..+....+...+.+.++.++.+|.+|+|||.+|....
T Consensus 86 ~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ 125 (314)
T 4a5l_A 86 E-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMH 125 (314)
T ss_dssp C-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCC
T ss_pred e-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccC
Confidence 6 566665566667778888889999999999999887654
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-06 Score=86.32 Aligned_cols=100 Identities=20% Similarity=0.298 Sum_probs=75.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC--cEEEEeeCCCCCC-------CC------CHHHHHHHHHHHHhCCCEEEcCccE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGS--TVDLLFRKELPLR-------GF------DDEMRAVVARNLEGRGINLHPRTTI 265 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv~~~~~~l~-------~~------~~~~~~~l~~~l~~~Gv~i~~~~~v 265 (498)
..+++|||+|+.|+.+|..|++.|. +|+++++.+.+.- .+ ...+.....+.+++.|++++.++.|
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 3689999999999999999999998 7999998654210 00 0111111235667889999999999
Q ss_pred EEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 266 KELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 266 ~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
..+..++. .|.+.+|+++.+|.+|+|+|.+|....
T Consensus 84 ~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~p~~~~ 118 (431)
T 1q1r_A 84 TAINRDRQ--QVILSDGRALDYDRLVLATGGRPRPLP 118 (431)
T ss_dssp EEEETTTT--EEEETTSCEEECSEEEECCCEEECCCG
T ss_pred EEEECCCC--EEEECCCCEEECCEEEEcCCCCccCCC
Confidence 99976544 567788888999999999999987654
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.23 E-value=5.6e-06 Score=85.50 Aligned_cols=101 Identities=13% Similarity=0.146 Sum_probs=81.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC--CCC-----------CC-CCHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE--LPL-----------RG-FDDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~--~~l-----------~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
..+|+|||+|+.|+.+|..+++.|.+|+++++.. ... +. ..+++...+.+.+++.|++++.+++|.
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~ 291 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS 291 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 3589999999999999999999999999997531 000 01 235677888888889999999999999
Q ss_pred EEEEeC---CeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 267 ELIKSE---EGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 267 ~i~~~~---~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
.+..+. +...|.+.+|+++.+|.+|+|+|.+|...
T Consensus 292 ~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~ 329 (521)
T 1hyu_A 292 KLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNM 329 (521)
T ss_dssp EEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred EEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCC
Confidence 997542 25778888898999999999999877653
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-06 Score=88.65 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=41.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHH
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~ 83 (498)
++||+||||||+|+++|+.|++.|.+|+|+|+ .+.....+|.|...+|.+.+.+.
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~------~~~~~~~~g~~~~~~~~~~~~~~ 76 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTD------RKPDEYSGLRLLNTVAHNAVTVQ 76 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEES------CCGGGSTTSCCCCCCCBCHHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcC------CChHhhcccccccchhccchhhh
Confidence 37999999999999999999999999999994 22112234566666676655543
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-06 Score=87.08 Aligned_cols=98 Identities=20% Similarity=0.290 Sum_probs=74.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHH---CCCcEEEEeeCCCCC-----C----C--CCHHHHHHHHHHHHhCCCEEEcCccEEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRG---MGSTVDLLFRKELPL-----R----G--FDDEMRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~---~g~~V~lv~~~~~~l-----~----~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+. + . ...++...+.+.+++.|++++.+ .|..
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 80 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK 80 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence 579999999999999999999 899999999887421 1 0 12233444667777889999988 8888
Q ss_pred EEEeCCeEEEEECCCe----EEEcCEEEEecCCCcCCCC
Q 042564 268 LIKSEEGVKVITDHGE----EIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 268 i~~~~~~~~v~~~~g~----~i~~D~vi~a~G~~p~~~~ 302 (498)
+..+++. |++.+++ ++.+|.+|+|+|.+|+...
T Consensus 81 i~~~~~~--V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ 117 (409)
T 3h8l_A 81 IDAKSSM--VYYTKPDGSMAEEEYDYVIVGIGAHLATEL 117 (409)
T ss_dssp EETTTTE--EEEECTTSCEEEEECSEEEECCCCEECGGG
T ss_pred EeCCCCE--EEEccCCcccceeeCCEEEECCCCCcCccC
Confidence 8765554 4444443 4899999999999988653
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.9e-06 Score=84.29 Aligned_cols=99 Identities=24% Similarity=0.325 Sum_probs=71.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCC------CCC------CHHHHHHHHHHH-HhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPL------RGF------DDEMRAVVARNL-EGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l------~~~------~~~~~~~l~~~l-~~~Gv~i~~~~~v~ 266 (498)
++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. +.+ ..++.....+.+ ++.|+++++++++.
T Consensus 4 ~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v~ 83 (449)
T 3kd9_A 4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEVI 83 (449)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEEE
T ss_pred CcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEEE
Confidence 6899999999999999999988 78999999987431 110 111222222334 67899999999999
Q ss_pred EEEEeCCeEEEEECCC-eEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITDHG-EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+. .+...+.+.++ .++.+|.+|+|||.+|....
T Consensus 84 ~i~--~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~ 118 (449)
T 3kd9_A 84 EVD--TGYVRVRENGGEKSYEWDYLVFANGASPQVPA 118 (449)
T ss_dssp EEC--SSEEEEECSSSEEEEECSEEEECCCEEECCCS
T ss_pred EEe--cCCCEEEECCceEEEEcCEEEECCCCCCCCCC
Confidence 884 33456677777 47999999999999887643
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=5.7e-06 Score=82.75 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=75.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCc--EEEEeeCCCCCCC---CCHHHH---------HHHHHHHHhCCCEEEcCccEEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGST--VDLLFRKELPLRG---FDDEMR---------AVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~--V~lv~~~~~~l~~---~~~~~~---------~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
++|+|||+|+.|+.+|..|++.|.+ |+++++.+.+.-. +...+. ....+.+++.|++++.++++..
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 82 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA 82 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence 5899999999999999999999987 9999987653110 111111 1123456778999999999999
Q ss_pred EEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 268 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+..+.. .+.+.+|+++.+|.+|+|||.+|....
T Consensus 83 id~~~~--~v~~~~g~~~~~d~lvlAtG~~p~~~~ 115 (410)
T 3ef6_A 83 LDVQTR--TISLDDGTTLSADAIVIATGSRARTMA 115 (410)
T ss_dssp EETTTT--EEEETTSCEEECSEEEECCCEEECCCC
T ss_pred EECCCC--EEEECCCCEEECCEEEEccCCcccCCC
Confidence 965543 577788989999999999999887653
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=5.5e-07 Score=90.83 Aligned_cols=98 Identities=21% Similarity=0.225 Sum_probs=72.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCCCC--CC---------CHHHHHHHHHHHHhCCCEEEcCccEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELPLR--GF---------DDEMRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~l~--~~---------~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
.|+|+|||+|+.|+.+|..|++.+ .+|+++++.+...- .+ ..++...+.+.+++.||+++.+ +|++
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~ 80 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAES 80 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEE
T ss_pred CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEE
Confidence 368999999999999999999875 68999998774211 00 0111112344566779999877 7889
Q ss_pred EEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 268 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
|+.+.+ .|++++|+++++|.+|+|+|.++...
T Consensus 81 Id~~~~--~V~~~~g~~i~YD~LViAtG~~~~~~ 112 (430)
T 3hyw_A 81 IDPDAN--TVTTQSGKKIEYDYLVIATGPKLVFG 112 (430)
T ss_dssp EETTTT--EEEETTCCEEECSEEEECCCCEEECC
T ss_pred EECCCC--EEEECCCCEEECCEEEEeCCCCccCC
Confidence 965544 57889999999999999999876543
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.1e-06 Score=85.86 Aligned_cols=101 Identities=15% Similarity=0.220 Sum_probs=76.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCC--CC-C----C------HHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPL--RG-F----D------DEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l--~~-~----~------~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
++|+|||+|+.|+.+|..|++. |.+|+++++.+.+. +. . . .++.....+.+++.|++++++++|.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~ 82 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV 82 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 5899999999999999999998 89999999887532 11 0 0 1111113466778899999999999
Q ss_pred EEEEeCCeEEEEE-CCCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVIT-DHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~-~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
++..+.+.+.+.. .+++.+.+|.+|+|||.+|....
T Consensus 83 ~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~ 119 (452)
T 3oc4_A 83 AMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQ 119 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCC
T ss_pred EEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCC
Confidence 9987766666542 34567999999999999987653
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-06 Score=90.36 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
..+.+.+.+.+ |++++++++|++|..+++++.|.+.+|+++.+|.||+|++..
T Consensus 215 ~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 267 (520)
T 1s3e_A 215 GQVSERIMDLL---GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPT 267 (520)
T ss_dssp HHHHHHHHHHH---GGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGG
T ss_pred HHHHHHHHHHc---CCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHH
Confidence 34444444433 788999999999988777788889999899999999999864
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.8e-06 Score=85.38 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=38.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
+...+||+|||||++|+++|..|++.|.+|+|+|+ ...+||.|.
T Consensus 26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~---------~~~~GG~~~ 69 (397)
T 3hdq_A 26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDR---------RPHIGGNAY 69 (397)
T ss_dssp CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSSGGGC
T ss_pred cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEec---------cCCCCCccc
Confidence 34579999999999999999999999999999995 557888875
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-06 Score=84.19 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=73.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-----------CC-HHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-----------FD-DEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-----------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
..+++|||+|+.|+.+|..+++.| +|+++++.+..... .+ .++.....+.+++.|++++.++.+..+
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~i 86 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI 86 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEEE
Confidence 468999999999999999999999 99999987653210 01 111112345567789999999999988
Q ss_pred EEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 269 IKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 269 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
..+.. .|. .+|+++.+|.+|+|||.+|....
T Consensus 87 d~~~~--~V~-~~g~~~~~d~lViATGs~p~~p~ 117 (367)
T 1xhc_A 87 DRGRK--VVI-TEKGEVPYDTLVLATGARAREPQ 117 (367)
T ss_dssp ETTTT--EEE-ESSCEEECSEEEECCCEEECCCC
T ss_pred ECCCC--EEE-ECCcEEECCEEEECCCCCCCCCC
Confidence 65433 344 56778999999999999987654
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.9e-06 Score=84.70 Aligned_cols=98 Identities=13% Similarity=0.177 Sum_probs=75.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--cEEEEeeCCCCCCC---C----------CHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGS--TVDLLFRKELPLRG---F----------DDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv~~~~~~l~~---~----------~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
++|+|||+|+.|+.+|..|++.|. +|+++++.+.+.-. + ..++.....+.+.+.+++++. .++.
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~ 80 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV 80 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence 689999999999999999999998 89999987632100 0 111222234567788999999 8999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+..+.. .+.+.+|+.+.+|.+|+|||.+|....
T Consensus 81 ~id~~~~--~v~~~~g~~~~~d~lvlAtG~~p~~~~ 114 (404)
T 3fg2_P 81 SIDREGR--KLLLASGTAIEYGHLVLATGARNRMLD 114 (404)
T ss_dssp EEETTTT--EEEESSSCEEECSEEEECCCEEECCCC
T ss_pred EEECCCC--EEEECCCCEEECCEEEEeeCCCccCCC
Confidence 9975544 577788889999999999999877643
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.3e-05 Score=81.70 Aligned_cols=33 Identities=36% Similarity=0.577 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||+|||||++|+++|+.|++.|++|+|+|+
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~ 63 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEM 63 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC
Confidence 468999999999999999999999999999995
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=4e-06 Score=85.23 Aligned_cols=100 Identities=24% Similarity=0.319 Sum_probs=68.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+|+ .+ .+. |
T Consensus 172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~------~~---~~l---------~------------------------- 208 (458)
T 1lvl_A 172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEA------RE---RIL---------P------------------------- 208 (458)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECS------SS---SSS---------T-------------------------
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEEc------CC---ccc---------c-------------------------
Confidence 5899999999999999999999999999993 11 100 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
.++. .+...+.+.+++.||+++.++ +..++.+.+.+...+|+..++.+|.||+|+|.+|+.+.
T Consensus 209 ---~~~~------------~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~ 272 (458)
T 1lvl_A 209 ---TYDS------------ELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKG 272 (458)
T ss_dssp ---TSCH------------HHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECCSS
T ss_pred ---ccCH------------HHHHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCCC
Confidence 0010 011123344566799999875 55666544555543453358999999999999988754
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.1e-06 Score=84.23 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=37.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcC-CCcccccc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVI-GGVGGTCV 72 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~-~~~GG~~~ 72 (498)
...+||+|||||++|++||+.|++.|++|+|+|+ . ..+||.|.
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~---------~~~~vGGr~~ 85 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEA---------NANRVGGRIK 85 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECS---------CSSCCBTTCC
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEec---------cccccCCcee
Confidence 4468999999999999999999999999999995 4 56888874
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=79.92 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=75.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-------C-C---HHHH------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-------F-D---DEMR------------------------ 245 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-------~-~---~~~~------------------------ 245 (498)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+... + . ..+.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 105 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK 105 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence 358999999999999999999999999999987643210 0 0 0000
Q ss_pred ----------------------HHHHHHHHhC--CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 246 ----------------------AVVARNLEGR--GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 246 ----------------------~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
..+.+.|.+. +++++++++|+++..+++++.+++.+|+++.+|.||.|.|..+...
T Consensus 106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vR 185 (398)
T 2xdo_A 106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVR 185 (398)
T ss_dssp SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCSCC
T ss_pred CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchhHH
Confidence 0112222221 3578899999999888777889999998899999999999987654
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=79.78 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=78.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-----CC---------------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-----LR--------------------------------------- 238 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-----l~--------------------------------------- 238 (498)
+|+|||+|+.|+.+|..|++.|.+|+++++.+.. ..
T Consensus 4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (394)
T 1k0i_A 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQR 83 (394)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEE
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCce
Confidence 6999999999999999999999999999987631 00
Q ss_pred ----------C-----CC-HHHHHHHHHHHHhCCCEEEcCccEEEEEEeC-CeEEEEE-CCCe--EEEcCEEEEecCCCc
Q 042564 239 ----------G-----FD-DEMRAVVARNLEGRGINLHPRTTIKELIKSE-EGVKVIT-DHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 239 ----------~-----~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~v~~-~~g~--~i~~D~vi~a~G~~p 298 (498)
. ++ ..+.+.+.+.+.+.|+++++++.|.++..++ +.+.|++ .+|+ ++.+|.||.|.|..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S 163 (394)
T 1k0i_A 84 RRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHG 163 (394)
T ss_dssp EEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTC
T ss_pred EEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 0 01 2345566777777899999999999998653 4466776 6887 799999999999987
Q ss_pred CCC
Q 042564 299 NTK 301 (498)
Q Consensus 299 ~~~ 301 (498)
...
T Consensus 164 ~vr 166 (394)
T 1k0i_A 164 ISR 166 (394)
T ss_dssp STG
T ss_pred HHH
Confidence 753
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-05 Score=81.74 Aligned_cols=100 Identities=20% Similarity=0.320 Sum_probs=69.5
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+|+ .+ .+ .|
T Consensus 170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~------~~---~~---------l~------------------------- 206 (464)
T 2eq6_A 170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEY------MP---EI---------LP------------------------- 206 (464)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SS---SS---------ST-------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEEc------CC---cc---------cc-------------------------
Confidence 5899999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeC-C--CceEEEEcCeEEEcCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQL-D--GTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~-~--g~~~~~~~d~liiAtG~~p 177 (498)
.++. .+...+.+.+++.||+++.++ +..++ .+.+.+... + |+..++.+|.||+|+|.+|
T Consensus 207 ---~~~~------------~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p 271 (464)
T 2eq6_A 207 ---QGDP------------ETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKP 271 (464)
T ss_dssp ---TSCH------------HHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEE
T ss_pred ---ccCH------------HHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCccc
Confidence 0010 111223445667899999885 44443 345566554 4 6545789999999999988
Q ss_pred CCCC
Q 042564 178 QRAP 181 (498)
Q Consensus 178 ~~p~ 181 (498)
+...
T Consensus 272 ~~~~ 275 (464)
T 2eq6_A 272 RTEG 275 (464)
T ss_dssp SCTT
T ss_pred CCCC
Confidence 7653
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.2e-06 Score=81.74 Aligned_cols=30 Identities=40% Similarity=0.442 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+|+||||||+|+++|+.|++.|.+|+|+||
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er 32 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYER 32 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEec
Confidence 799999999999999999999999999995
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=9.7e-06 Score=82.28 Aligned_cols=98 Identities=22% Similarity=0.345 Sum_probs=68.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||++|+.+|..|++.|.+|+++|+ .+ .+ .|
T Consensus 168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~------~~---~~---------l~------------------------- 204 (455)
T 2yqu_A 168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEY------MD---RI---------LP------------------------- 204 (455)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SS---SS---------CT-------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEec------CC---cc---------cc-------------------------
Confidence 5799999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
..+ . .+...+.+.+++.|++++.++ +..++ .+.+.+.+.+|. ++.+|.||+|+|.+|+.+
T Consensus 205 ---~~~-~-----------~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~--~i~~D~vv~A~G~~p~~~ 267 (455)
T 2yqu_A 205 ---TMD-L-----------EVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGE--VLEADRVLVAVGRRPYTE 267 (455)
T ss_dssp ---TSC-H-----------HHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSC--EEEESEEEECSCEEECCT
T ss_pred ---ccC-H-----------HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCe--EEEcCEEEECcCCCcCCC
Confidence 000 0 111222344556799999875 55543 455777766664 799999999999988765
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 268 ~ 268 (455)
T 2yqu_A 268 G 268 (455)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=8.8e-06 Score=82.76 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=75.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC-----CcEEEEeeCCCCCC-------------------------C-------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG-----STVDLLFRKELPLR-------------------------G------------- 239 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g-----~~V~lv~~~~~~l~-------------------------~------------- 239 (498)
+|+|||+|+.|+.+|..|.+.| .+|+++++.+.+-. .
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~ 111 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD 111 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence 7999999999999999999999 89999998773210 0
Q ss_pred -------------CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe---CCe--EEEEECCCe----EEEcCEEEEecCCC
Q 042564 240 -------------FDDEMRAVVARNLEGRGINLHPRTTIKELIKS---EEG--VKVITDHGE----EIVADVVLFATGRA 297 (498)
Q Consensus 240 -------------~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~---~~~--~~v~~~~g~----~i~~D~vi~a~G~~ 297 (498)
...++.+.+....++.++.++++++|.++..+ ++. +.|.+.+|+ ++.+|.||+|+|..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~ 191 (463)
T 3s5w_A 112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT 191 (463)
T ss_dssp CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence 01234445555556668999999999999875 332 366666664 79999999999998
Q ss_pred cCCC
Q 042564 298 PNTK 301 (498)
Q Consensus 298 p~~~ 301 (498)
|...
T Consensus 192 p~~p 195 (463)
T 3s5w_A 192 PRIP 195 (463)
T ss_dssp ECCC
T ss_pred CCCc
Confidence 8754
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2.8e-06 Score=85.40 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+.+......+..+.+++++++|++|..+++++.|++.+|+ +.+|.||+|++...
T Consensus 205 ~~~l~~~l~~~l~~~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~~ 258 (424)
T 2b9w_A 205 TQAMFEHLNATLEHPAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLEK 258 (424)
T ss_dssp HHHHHHHHHHHSSSCCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHHH
T ss_pred HHHHHHHHHHhhcceEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHHH
Confidence 3333333344446678999999999887777888888886 89999999998753
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=6.9e-06 Score=86.26 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=78.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCC----------CC-C-C--HHHHHHHHHHHHhCCCEEEcCcc
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPL----------RG-F-D--DEMRAVVARNLEGRGINLHPRTT 264 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l----------~~-~-~--~~~~~~l~~~l~~~Gv~i~~~~~ 264 (498)
.++|+|||+|+.|+.+|..|++. |.+|+++++.+.+. .. . + ..+...+....++.|+++++++.
T Consensus 36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~~ 115 (588)
T 3ics_A 36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLSE 115 (588)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSEE
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECCE
Confidence 46899999999999999999998 88999999987631 10 0 1 11223345556678999999999
Q ss_pred EEEEEEeCCeEEEEE-CCCe--EEEcCEEEEecCCCcCCCC
Q 042564 265 IKELIKSEEGVKVIT-DHGE--EIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 265 v~~i~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~~~ 302 (498)
|.++..+++.+.+.. .+|+ .+.+|.+|+|||.+|....
T Consensus 116 V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~ 156 (588)
T 3ics_A 116 VVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPS 156 (588)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred EEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCC
Confidence 999987776666654 4555 6899999999999887653
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.07 E-value=8.4e-06 Score=83.17 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=67.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCC------CCC-C------CHHH------HHHHHHHHH-hCCCEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELP------LRG-F------DDEM------RAVVARNLE-GRGINL 259 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~------l~~-~------~~~~------~~~l~~~l~-~~Gv~i 259 (498)
++|+|||+|+.|+.+|..|++. |.+|+++++.+.+ ++. + ..++ .....+.+. +.|+++
T Consensus 4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 83 (472)
T 3iwa_A 4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVEA 83 (472)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcEE
Confidence 6899999999999999999998 8999999998763 111 0 1111 111222333 579999
Q ss_pred EcCccEEEEEEeCCeEEEEE-CCCe--EEEcCEEEEecCCCcCCCC
Q 042564 260 HPRTTIKELIKSEEGVKVIT-DHGE--EIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~~~ 302 (498)
+++++|.++..+.+.+.+.. .+|+ .+.+|.+|+|||.+|....
T Consensus 84 ~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ 129 (472)
T 3iwa_A 84 LVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129 (472)
T ss_dssp ECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCS
T ss_pred EECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCC
Confidence 99999999987776666654 3354 7899999999999887653
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.9e-06 Score=85.68 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEE-eCCe-EEEEECCCeEEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIK-SEEG-VKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~-~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
.++.+.+.+.+++.|++++++++|++|.. +++. ..|.+.+|+++.||.||.+++..
T Consensus 256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 46888999999999999999999999987 4444 67888899899999999999988
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.07 E-value=6.4e-06 Score=82.53 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=76.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCc--EEEEeeCCCCC------C-C------CCHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGST--VDLLFRKELPL------R-G------FDDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~--V~lv~~~~~~l------~-~------~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
.+|+|||+|+.|+.+|..|++.|.+ |+++++.+.+. + . ....+.....+.+++.|++++.++++.
T Consensus 10 ~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 89 (415)
T 3lxd_A 10 ADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVV 89 (415)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCEE
T ss_pred CcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEEE
Confidence 5899999999999999999999987 99999876421 0 0 011222223566778899999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+..+.. .+.+.+|+.+.+|.+|+|||.+|....
T Consensus 90 ~id~~~~--~v~~~~g~~~~~d~lvlAtG~~~~~~~ 123 (415)
T 3lxd_A 90 SLDPAAH--TVKLGDGSAIEYGKLIWATGGDPRRLS 123 (415)
T ss_dssp EEETTTT--EEEETTSCEEEEEEEEECCCEECCCCB
T ss_pred EEECCCC--EEEECCCCEEEeeEEEEccCCccCCCC
Confidence 9965443 577788989999999999998887653
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.4e-05 Score=81.14 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=79.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC--------------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------------------------------------------- 237 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------------------------------------------- 237 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+...
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE 85 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence 479999999999999999999999999999875320
Q ss_pred -------------------------CC----C-CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC----eEEEEECCC-
Q 042564 238 -------------------------RG----F-DDEMRAVVARNLEGRGINLHPRTTIKELIKSEE----GVKVITDHG- 282 (498)
Q Consensus 238 -------------------------~~----~-~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~----~~~v~~~~g- 282 (498)
+. + ...+.+.+.+.+++.|++++++++|+++..+++ ++.+++.++
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~ 165 (535)
T 3ihg_A 86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD 165 (535)
T ss_dssp SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence 00 0 123556677788888999999999999998888 778877765
Q ss_pred --eEEEcCEEEEecCCCc
Q 042564 283 --EEIVADVVLFATGRAP 298 (498)
Q Consensus 283 --~~i~~D~vi~a~G~~p 298 (498)
.++.+|.||.|.|...
T Consensus 166 ~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 166 GEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp EEEEEEEEEEEECCCTTC
T ss_pred CeEEEEeCEEEECCCCcc
Confidence 6899999999999865
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=98.06 E-value=3e-06 Score=87.05 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhCC-CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRG-INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
..+.+.+.+.+.+.| ++++++++|++|..+++++.|++.+|+++.+|.||+|+|..
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~ 311 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLN 311 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGG
T ss_pred HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHH
Confidence 567888888898888 99999999999988777788888888889999999999964
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.8e-05 Score=74.45 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=73.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC---C--------CCC----CCHHHHHHHHHHHHhCCCEEEcCccEEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL---P--------LRG----FDDEMRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~---~--------l~~----~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
.|+|||+|+.|+.+|..+++.|.+|+++++... + ++. ..+++.........+.+..+..+..+..
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV 87 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence 699999999999999999999999999997531 0 121 2356777777777888888887766655
Q ss_pred EEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 268 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.... ...+...+++++.+|.+|+|||.+|....
T Consensus 88 ~~~~--~~~~~~~~~~~~~~d~liiAtGs~~~~~~ 120 (312)
T 4gcm_A 88 EDKG--EYKVINFGNKELTAKAVIIATGAEYKKIG 120 (312)
T ss_dssp EECS--SCEEEECSSCEEEEEEEEECCCEEECCCC
T ss_pred eeee--cceeeccCCeEEEeceeEEcccCccCcCC
Confidence 4322 23345567788999999999999887644
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.7e-05 Score=78.91 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=77.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC----C--------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR----G-------------------------------------- 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~----~-------------------------------------- 239 (498)
-+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-. .
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT 86 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence 3799999999999999999999999999998753100 0
Q ss_pred ----------CC-HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEE-EEEC---CCe--EEEcCEEEEecCCCcCC
Q 042564 240 ----------FD-DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-VITD---HGE--EIVADVVLFATGRAPNT 300 (498)
Q Consensus 240 ----------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-v~~~---~g~--~i~~D~vi~a~G~~p~~ 300 (498)
++ ..+.+.+.+.+.+.|+++++++.|+++..+++.+. |++. +|+ ++.+|.||.|+|..+..
T Consensus 87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v 164 (453)
T 3atr_A 87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF 164 (453)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence 00 24566677777888999999999999988776643 5443 676 79999999999987764
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.2e-06 Score=84.33 Aligned_cols=99 Identities=21% Similarity=0.197 Sum_probs=72.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCCCCC-CCHHHH---------HHHHHHHHhCCCEEEcCccEEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELPLRG-FDDEMR---------AVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~l~~-~~~~~~---------~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
.|+|+|||+|+.|+.+|..|++.+ .+|+++++.+..... ....+. ..-.+.+.+.||+++.+ .|+.|
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i 80 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI 80 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence 589999999999999999998865 589999987642211 111110 00123456689999876 78888
Q ss_pred EEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 269 IKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 269 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+.+.+ .+.+.+|+++.+|.+|+|+|.+++...
T Consensus 81 d~~~~--~v~~~~g~~i~yd~LviAtG~~~~~~~ 112 (401)
T 3vrd_B 81 DPDKK--LVKTAGGAEFAYDRCVVAPGIDLLYDK 112 (401)
T ss_dssp ETTTT--EEEETTSCEEECSEEEECCCEEECGGG
T ss_pred EccCc--EEEecccceeecceeeeccCCccccCC
Confidence 65543 577889999999999999999887654
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.3e-06 Score=88.34 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=35.0
Q ss_pred CEEEcCccEEEEEEe-CCeEEEEECCCeEEEcCEEEEecCC
Q 042564 257 INLHPRTTIKELIKS-EEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 257 v~i~~~~~v~~i~~~-~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.+|+++++|++|..+ ++.+.|++.+|+++.+|.||++++.
T Consensus 215 ~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~ 255 (516)
T 1rsg_A 215 NWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQ 255 (516)
T ss_dssp GGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCH
T ss_pred CEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCH
Confidence 569999999999875 5568899999988999999999874
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.5e-05 Score=81.47 Aligned_cols=98 Identities=23% Similarity=0.285 Sum_probs=75.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-CC-----------------------CC------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-PL-----------------------RG------------------ 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-~l-----------------------~~------------------ 239 (498)
-+|+|||||..|+++|..+++.|.+|.++++... +- ..
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~ 108 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA 108 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence 3799999999999999999999999999998631 10 00
Q ss_pred ------------CC-HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 240 ------------FD-DEMRAVVARNLEG-RGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 240 ------------~~-~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.| ..+.+.+.+.+++ .|++++ +..|..+..+++. ..|.+.+|..+.+|.||+|+|..+..
T Consensus 109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~ 183 (651)
T 3ces_A 109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDG 183 (651)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCC
T ss_pred ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccC
Confidence 01 1345566777777 699995 5689999876665 46788889889999999999987643
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.7e-05 Score=77.08 Aligned_cols=94 Identities=11% Similarity=0.151 Sum_probs=71.0
Q ss_pred eEEEEcCCHHHHHHHHHHHH---CCCcEEEEeeCCCCCC-------------------C----CCH---HHHH-------
Q 042564 203 RAVVLGGGYIAVEFASIWRG---MGSTVDLLFRKELPLR-------------------G----FDD---EMRA------- 246 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~---~g~~V~lv~~~~~~l~-------------------~----~~~---~~~~------- 246 (498)
+|+|||+|..|+-+|..|.+ .|.+|+++++.+.+-. . .+. .+.+
T Consensus 3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~ 82 (342)
T 3qj4_A 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA 82 (342)
T ss_dssp EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence 69999999999999999999 8999999997642100 0 000 1111
Q ss_pred -------------------------------HHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC
Q 042564 247 -------------------------------VVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295 (498)
Q Consensus 247 -------------------------------~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G 295 (498)
.+....++.|++++++++|.+|..+++++.|.+.+|+.+.+|.||+|++
T Consensus 83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p 162 (342)
T 3qj4_A 83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMP 162 (342)
T ss_dssp TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSC
T ss_pred CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCC
Confidence 1112222338999999999999988888889998888889999999997
Q ss_pred C
Q 042564 296 R 296 (498)
Q Consensus 296 ~ 296 (498)
.
T Consensus 163 ~ 163 (342)
T 3qj4_A 163 V 163 (342)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=98.04 E-value=3e-06 Score=87.27 Aligned_cols=43 Identities=33% Similarity=0.348 Sum_probs=35.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTC 71 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~ 71 (498)
|...+||+|||||++|++||+.|++.|++|+|+|+ ...+||.|
T Consensus 10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~---------~~~~GG~~ 52 (504)
T 1sez_A 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEA---------EGKAGGKL 52 (504)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECS---------SSSSCSSC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEe---------CCCCCCce
Confidence 45568999999999999999999999999999995 45567765
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=98.04 E-value=3.3e-06 Score=83.14 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=37.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVI 73 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~ 73 (498)
++|++|||||++|+++|.+|++.|.+|+|+|+ ...+||.|..
T Consensus 1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~---------~~~~GG~~~~ 42 (367)
T 1i8t_A 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEK---------RNHIGGNAYT 42 (367)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECS---------SSSSSGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEec---------CCCCCcceEe
Confidence 37999999999999999999999999999995 4568888854
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.2e-05 Score=76.11 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=73.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-------CCHHHHH-----------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-------FDDEMRA----------------------------- 246 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-------~~~~~~~----------------------------- 246 (498)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+-.. +.+...+
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 82 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN 82 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence 6999999999999999999999999999987643210 1111111
Q ss_pred ------------------------------HHHHHHHh-CCCEEEcCccEEEEEEeCC-eEEEEECCCeEEEcCEEEEec
Q 042564 247 ------------------------------VVARNLEG-RGINLHPRTTIKELIKSEE-GVKVITDHGEEIVADVVLFAT 294 (498)
Q Consensus 247 ------------------------------~l~~~l~~-~Gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~D~vi~a~ 294 (498)
.+.+.|.+ .+..+++++++.+++..++ .+.++++||+++.+|+||-|-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgAD 162 (412)
T 4hb9_A 83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGAD 162 (412)
T ss_dssp TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECC
T ss_pred CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECC
Confidence 12333333 2556889999999987655 488999999999999999999
Q ss_pred CCCcCC
Q 042564 295 GRAPNT 300 (498)
Q Consensus 295 G~~p~~ 300 (498)
|..+..
T Consensus 163 G~~S~v 168 (412)
T 4hb9_A 163 GSNSKV 168 (412)
T ss_dssp CTTCHH
T ss_pred CCCcch
Confidence 987643
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.6e-06 Score=86.38 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
.+.+.+.+. .|++++++++|++|..++++ +.|.+ +|+++.+|.||+|++..
T Consensus 216 ~l~~~l~~~---lg~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~ 267 (453)
T 2yg5_A 216 QVSIRMAEA---LGDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPN 267 (453)
T ss_dssp HHHHHHHHH---HGGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGG
T ss_pred HHHHHHHHh---cCCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHH
Confidence 344444433 37899999999999988877 77765 67789999999999864
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.8e-05 Score=79.69 Aligned_cols=96 Identities=20% Similarity=0.243 Sum_probs=74.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC--------CC-------------CCC----------------HHH
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP--------LR-------------GFD----------------DEM 244 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~--------l~-------------~~~----------------~~~ 244 (498)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+ .+ .+. +++
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i 96 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 96 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence 37999999999999999999999999999987532 01 011 234
Q ss_pred HHHHHHHHHhCC--CEEEcCccEEEEEEeCC--eEEEEECCCeEEEcCEEEEecCCC
Q 042564 245 RAVVARNLEGRG--INLHPRTTIKELIKSEE--GVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 245 ~~~l~~~l~~~G--v~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
.+.+....++.+ +.++++++|.++..+++ ...|++.+|+++.+|.||+|+|..
T Consensus 97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~ 153 (542)
T 1w4x_A 97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL 153 (542)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence 555555556655 67899999999987654 577888899889999999999953
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=80.72 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=73.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC--cEEEEeeCCCCCCC---CCHHHHHH-H-----HHHHHhCCCEEEcCccEEEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGS--TVDLLFRKELPLRG---FDDEMRAV-V-----ARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv~~~~~~l~~---~~~~~~~~-l-----~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
..+|+|||+|+.|+.+|..|++.|. +|+++++.+.+... +...+... . .+.+++.|++++.+++|..+.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 86 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD 86 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEE
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEE
Confidence 3579999999999999999999987 59999987753211 11111110 0 003456799999999999986
Q ss_pred EeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 270 KSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 270 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+.. .|.+.+|+++.+|.+|+|||.+|....
T Consensus 87 ~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~ 117 (408)
T 2gqw_A 87 PQAH--TVALSDGRTLPYGTLVLATGAAPRALP 117 (408)
T ss_dssp TTTT--EEEETTSCEEECSEEEECCCEEECCCG
T ss_pred CCCC--EEEECCCCEEECCEEEECCCCCCCCCC
Confidence 5443 566778888999999999999887643
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=7.5e-06 Score=85.54 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=73.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCCC-----------C-C-H-HHHHHHHHHHHhCCCEEEcCccE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPLRG-----------F-D-D-EMRAVVARNLEGRGINLHPRTTI 265 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l~~-----------~-~-~-~~~~~l~~~l~~~Gv~i~~~~~v 265 (498)
++|+|||+|+.|+.+|..|++. +.+|+++++.+.+.-. . + . .+........++.|++++++++|
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V 81 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV 81 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence 5799999999999999999988 7899999998753100 0 0 0 01111233334479999999999
Q ss_pred EEEEEeCCeEEEEE-CCCe--EEEcCEEEEecCCCcCCCC
Q 042564 266 KELIKSEEGVKVIT-DHGE--EIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 266 ~~i~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~~~ 302 (498)
.++..+.+.+.+.. .+|+ ++.+|.+|+|||.+|....
T Consensus 82 ~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ 121 (565)
T 3ntd_A 82 VAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP 121 (565)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred EEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCC
Confidence 99987766666654 2343 7899999999999887654
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.7e-06 Score=85.88 Aligned_cols=55 Identities=22% Similarity=0.275 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
..+.+.+.+.+++.|++++++++|++|..++++ +.|.+ ++.++.+|.||+|++..
T Consensus 234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~~ 289 (477)
T 3nks_A 234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPAS 289 (477)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCHH
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCHH
Confidence 357888889999999999999999999887666 67765 45579999999999753
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=98.00 E-value=5.2e-06 Score=83.66 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
..+.+.+.+.+++.|++++++++|++|..+++++..+..+|+++.||.||+|+|..+.
T Consensus 234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence 4688888888888999999999999998877775544457888999999999998875
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-05 Score=76.60 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=69.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
..+++|||||+.|+.+|..|++.|.+|+++|+ .+ .+. |
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~------~~---~~~---------~------------------------ 182 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAP------CE---QVM---------P------------------------ 182 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES------SS---SSS---------T------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEec------Cc---chh---------h------------------------
Confidence 46899999999999999999999999999993 11 100 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
...+ . .+...+.+.+++.|++++.++ +..+ +.+.+.+.+.+|+ ++.+|.||+|+|.+|+.
T Consensus 183 ---~~~~-~-----------~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~d~vv~a~G~~p~~ 245 (384)
T 2v3a_A 183 ---GLLH-P-----------AAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGE--VIPCDLVVSAVGLRPRT 245 (384)
T ss_dssp ---TTSC-H-----------HHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSC--EEEESEEEECSCEEECC
T ss_pred ---cccC-H-----------HHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCC--EEECCEEEECcCCCcCH
Confidence 0000 0 112223345667899999886 5544 3456777777775 79999999999988865
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=5.1e-05 Score=78.79 Aligned_cols=98 Identities=23% Similarity=0.294 Sum_probs=75.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-CC-----------------------CC------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-PL-----------------------RG------------------ 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-~l-----------------------~~------------------ 239 (498)
-+|+|||||..|+++|..+++.|.+|.++++... +- ..
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~ 107 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT 107 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence 4799999999999999999999999999998631 10 00
Q ss_pred ------------CC-HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 240 ------------FD-DEMRAVVARNLEG-RGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 240 ------------~~-~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.| ..+.+.+.+.+++ .|++++ +..|.++..+++. ..|.+.+|+.+.+|.||+|+|..++.
T Consensus 108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~ 182 (637)
T 2zxi_A 108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG 182 (637)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence 00 1244556677777 599995 6789999876665 46888899899999999999987654
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-05 Score=79.99 Aligned_cols=101 Identities=29% Similarity=0.403 Sum_probs=68.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
..+++|||||+.|+.+|..|++.|.+|+|+|+ .+ .+ .|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~------~~---~~---------l~------------------------ 207 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEG------AG---EI---------LS------------------------ 207 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEES------SS---SS---------ST------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc------CC---cc---------cc------------------------
Confidence 36899999999999999999999999999993 11 10 00
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeC-CCceEEEEcCeEEEcCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQL-DGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~-~g~~~~~~~d~liiAtG~~p~ 178 (498)
.++. .+...+.+.+++.||+++.++ +..++ .+.+.+... +|+..++.+|.||+|+|.+|+
T Consensus 208 ----~~~~------------~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 271 (455)
T 1ebd_A 208 ----GFEK------------QMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPN 271 (455)
T ss_dssp ----TSCH------------HHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred ----ccCH------------HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence 0110 111223345667899999885 44443 344555542 333457999999999999887
Q ss_pred CCC
Q 042564 179 RAP 181 (498)
Q Consensus 179 ~p~ 181 (498)
...
T Consensus 272 ~~~ 274 (455)
T 1ebd_A 272 TDE 274 (455)
T ss_dssp CSS
T ss_pred cCc
Confidence 643
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=5.2e-06 Score=85.09 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC---eEEEcCEEEEecCCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRA 297 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~ 297 (498)
.+.+.+.+.+.+ .+++++++|++|..+++++.|++.+| +++.+|.||+|++..
T Consensus 240 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~ 295 (489)
T 2jae_A 240 RIYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPH 295 (489)
T ss_dssp HHHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHH
T ss_pred HHHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHH
Confidence 466666665543 67999999999998888888888776 679999999999753
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.2e-05 Score=81.86 Aligned_cols=99 Identities=21% Similarity=0.285 Sum_probs=79.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------------------------------------C-----C
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------------------------------------R-----G 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------------------------------------~-----~ 239 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... . .
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 129 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG 129 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence 479999999999999999999999999999754210 0 0
Q ss_pred ---------------C-CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE--CCC-eEEEcCEEEEecCCCcCC
Q 042564 240 ---------------F-DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT--DHG-EEIVADVVLFATGRAPNT 300 (498)
Q Consensus 240 ---------------~-~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~--~~g-~~i~~D~vi~a~G~~p~~ 300 (498)
. ...+.+.+.+.+++.|++++++++|++++.+++++.+++ .+| +++.+|.||.|.|..+..
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S~v 209 (570)
T 3fmw_A 130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTV 209 (570)
T ss_dssp CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSCHH
T ss_pred ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCchH
Confidence 0 124566677778778999999999999988877777777 678 689999999999987643
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=5.3e-06 Score=81.46 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=32.3
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|..++||+|||||++|+++|++|++.|.+|+|+|+
T Consensus 3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~ 37 (363)
T 1c0p_A 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILAR 37 (363)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence 44568999999999999999999999999999994
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.2e-05 Score=78.98 Aligned_cols=97 Identities=22% Similarity=0.224 Sum_probs=75.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC------------------------C------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR------------------------G------------------ 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~------------------------~------------------ 239 (498)
-+|+|||+|..|+++|..+++.|.+|.++++....+. .
T Consensus 22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~~ 101 (641)
T 3cp8_A 22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLNR 101 (641)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEECS
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhccc
Confidence 4899999999999999999999999999998631000 0
Q ss_pred ------------CC-HHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEE-EEECCCeEEEcCEEEEecCCCcC
Q 042564 240 ------------FD-DEMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVK-VITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 240 ------------~~-~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
.| ..+...+.+.+++. |++++. ..|..+..+++.+. |.+.+|+.+.+|.||+|+|..++
T Consensus 102 ~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~ 175 (641)
T 3cp8_A 102 SKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN 175 (641)
T ss_dssp SSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred ccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence 01 13455666777774 999965 48999887776654 88888989999999999998755
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=81.17 Aligned_cols=100 Identities=21% Similarity=0.314 Sum_probs=74.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCC--C--------C-C-C-HHHHHHHHHHHHhCCCEEEcCccEEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPL--R--------G-F-D-DEMRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l--~--------~-~-~-~~~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
+|+|||+|+.|+.+|..+++. |.+|+++++.+.+. + . . + .++.....+.+++.|++++.++.+..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 81 (447)
T 1nhp_A 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA 81 (447)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEEE
Confidence 699999999999999999987 89999999977431 0 0 0 1 11122234567778999999999999
Q ss_pred EEEeCCeEEEEE-CCCe--EEEcCEEEEecCCCcCCCC
Q 042564 268 LIKSEEGVKVIT-DHGE--EIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 268 i~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~~~ 302 (498)
+..+++.+.+.. .+|+ ++.+|.+|+|||.+|....
T Consensus 82 i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ 119 (447)
T 1nhp_A 82 IQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD 119 (447)
T ss_dssp EETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred EeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCC
Confidence 876666666554 3454 4899999999999887653
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.6e-05 Score=80.55 Aligned_cols=97 Identities=22% Similarity=0.259 Sum_probs=68.5
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+|+ .+ .+.
T Consensus 168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~------~~---~~l----------------------------------- 203 (450)
T 1ges_A 168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEM------FD---APL----------------------------------- 203 (450)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SS---SSS-----------------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCEEEEEEe------CC---chh-----------------------------------
Confidence 5899999999999999999999999999993 11 100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC---CEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP---NEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~---~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+.++. .+...+.+.+++.|++++.++ +..++. ..+.+.+.+|+ ++.+|.||+|+|.+|+.
T Consensus 204 --~~~~~------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~--~i~~D~vv~a~G~~p~~ 267 (450)
T 1ges_A 204 --PSFDP------------MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGR--SETVDCLIWAIGREPAN 267 (450)
T ss_dssp --TTSCH------------HHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSC--EEEESEEEECSCEEESC
T ss_pred --hhhhH------------HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCc--EEEcCEEEECCCCCcCC
Confidence 00110 011223344566799999885 555542 23677777775 78999999999998876
Q ss_pred C
Q 042564 180 A 180 (498)
Q Consensus 180 p 180 (498)
.
T Consensus 268 ~ 268 (450)
T 1ges_A 268 D 268 (450)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=5.2e-05 Score=79.18 Aligned_cols=98 Identities=22% Similarity=0.187 Sum_probs=75.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC---------------------------------------C--
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG---------------------------------------F-- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~---------------------------------------~-- 240 (498)
.+|+|||+|..|+..|..+++.|.+|+++++.+.+... .
T Consensus 127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~ 206 (571)
T 1y0p_A 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP 206 (571)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 48999999999999999999999999999987643100 0
Q ss_pred -----------------------------------------------CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeC-
Q 042564 241 -----------------------------------------------DDEMRAVVARNLEGRGINLHPRTTIKELIKSE- 272 (498)
Q Consensus 241 -----------------------------------------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~- 272 (498)
...+.+.+.+.+++.||+++++++|+++..++
T Consensus 207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~ 286 (571)
T 1y0p_A 207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK 286 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence 02345566777788899999999999998765
Q ss_pred Ce-EEEEE--CCCe--EEEcCEEEEecCCCcC
Q 042564 273 EG-VKVIT--DHGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 273 ~~-~~v~~--~~g~--~i~~D~vi~a~G~~p~ 299 (498)
+. ..|++ .+|+ ++.+|.||+|+|....
T Consensus 287 g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~ 318 (571)
T 1y0p_A 287 GTVKGILVKGMYKGYYWVKADAVILATGGFAK 318 (571)
T ss_dssp SCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred CeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence 43 23443 3675 6889999999997543
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.96 E-value=3e-06 Score=86.24 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.+.+.+.+.+.+ ++++++++|++|..+++++.|++.+|+++.+|.||+|++.
T Consensus 236 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~ 287 (470)
T 3i6d_A 236 TLVEEIEKQLKL--TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPH 287 (470)
T ss_dssp HHHHHHHHTCCS--EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCH
T ss_pred HHHHHHHHhcCC--CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCH
Confidence 444444443322 6899999999999888888899999988999999999975
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.96 E-value=6.8e-05 Score=76.87 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=79.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-------------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR------------------------------------------- 238 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~------------------------------------------- 238 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 13 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
T 2qa2_A 13 ASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDFG 92 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEGG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecccc
Confidence 4899999999999999999999999999998653210
Q ss_pred ----CC-------CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe---EEEcCEEEEecCCCcC
Q 042564 239 ----GF-------DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE---EIVADVVLFATGRAPN 299 (498)
Q Consensus 239 ----~~-------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~---~i~~D~vi~a~G~~p~ 299 (498)
.. -..+.+.+.+.+++.|++++++++|.+++.+++++.+++.+++ ++.+|.||.|.|..+.
T Consensus 93 ~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~ 167 (499)
T 2qa2_A 93 VLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRST 167 (499)
T ss_dssp GSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred cCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence 00 0235556777778889999999999999988888888887764 7999999999998764
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=5.4e-06 Score=84.66 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE---CCCeEEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT---DHGEEIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~i~~D~vi~a~G~~ 297 (498)
..+.+.+.+.+ |++++++++|++|..+++++.|++ .+|+++.+|.||+|++..
T Consensus 238 ~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~ 293 (478)
T 2ivd_A 238 QVLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH 293 (478)
T ss_dssp HHHHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred HHHHHHHHHHh---hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHH
Confidence 44666565555 678999999999987776777877 678889999999999853
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=97.95 E-value=9.8e-06 Score=82.17 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=74.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCC----------CC-C---CH-HHHHHHHHHHHhCCCEEEcCccE
Q 042564 203 RAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPL----------RG-F---DD-EMRAVVARNLEGRGINLHPRTTI 265 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l----------~~-~---~~-~~~~~l~~~l~~~Gv~i~~~~~v 265 (498)
+++|||+|+.|+.+|..|++. |.+|+++++.+.+. .. . ++ ++...+.+.+++.|++++.++.+
T Consensus 2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 81 (452)
T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV 81 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence 699999999999999999998 99999999987421 00 0 11 11112345677889999999999
Q ss_pred EEEEEeCCeEEEEEC-C--CeEEEcCEEEEecCCCcCCCC
Q 042564 266 KELIKSEEGVKVITD-H--GEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 266 ~~i~~~~~~~~v~~~-~--g~~i~~D~vi~a~G~~p~~~~ 302 (498)
..+..+++.+.+... + ++++.+|.+|+|+|.+|....
T Consensus 82 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~ 121 (452)
T 2cdu_A 82 TNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP 121 (452)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred EEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCC
Confidence 998766666655542 2 457999999999999887654
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.94 E-value=7.2e-05 Score=76.70 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=79.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC------------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG------------------------------------------ 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~------------------------------------------ 239 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 91 (500)
T 2qa1_A 12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDFG 91 (500)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEEGG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecccc
Confidence 47999999999999999999999999999986532100
Q ss_pred -C-----------CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe---EEEcCEEEEecCCCcCC
Q 042564 240 -F-----------DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE---EIVADVVLFATGRAPNT 300 (498)
Q Consensus 240 -~-----------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~---~i~~D~vi~a~G~~p~~ 300 (498)
. -..+.+.+.+.+++.|++++++++|.+++.+++++.+++.+++ ++.+|.||.|.|.....
T Consensus 92 ~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~V 167 (500)
T 2qa1_A 92 VLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSV 167 (500)
T ss_dssp GSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCHH
T ss_pred cCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchHH
Confidence 0 0234556677777889999999999999988888888877664 79999999999987643
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=3.4e-05 Score=78.36 Aligned_cols=98 Identities=19% Similarity=0.263 Sum_probs=68.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+++++ .+ .+.
T Consensus 167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~------~~---~~l----------------------------------- 202 (463)
T 2r9z_A 167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVAL------ED---RLL----------------------------------- 202 (463)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SS---SSS-----------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEc------CC---ccc-----------------------------------
Confidence 5799999999999999999999999999993 11 100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+.++. . +...+.+.+++.||+++.++ +..++ .+.+.|.+.+|+. ++.+|.||+|+|.+|+..
T Consensus 203 --~~~~~-~-----------~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~-~i~~D~vv~a~G~~p~~~ 267 (463)
T 2r9z_A 203 --FQFDP-L-----------LSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTR-LEGFDSVIWAVGRAPNTR 267 (463)
T ss_dssp --TTSCH-H-----------HHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCE-EEEESEEEECSCEEESCT
T ss_pred --cccCH-H-----------HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcE-EEEcCEEEECCCCCcCCC
Confidence 00110 0 11123345667899999886 55553 3457777777643 689999999999988764
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=3.1e-05 Score=79.04 Aligned_cols=99 Identities=22% Similarity=0.313 Sum_probs=68.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+++++ .+ .+.
T Consensus 184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~------~~---~~l----------------------------------- 219 (478)
T 1v59_A 184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEF------QP---QIG----------------------------------- 219 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SS---SSS-----------------------------------
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCEEEEEEe------CC---ccc-----------------------------------
Confidence 5899999999999999999999999999993 11 100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC----CEEEEEeC---CCceEEEEcCeEEEcCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP----NEVEVTQL---DGTKLSYSAKHILIATGS 175 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~----~~~~v~~~---~g~~~~~~~d~liiAtG~ 175 (498)
+.++ ..+...+.+.+++.||+++.++ +..++. +.+.+... +|+..++.+|.||+|+|.
T Consensus 220 --~~~~------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 285 (478)
T 1v59_A 220 --ASMD------------GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR 285 (478)
T ss_dssp --SSSC------------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred --cccC------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCC
Confidence 0111 0112233445677899999885 455542 34555543 333457999999999999
Q ss_pred CCCCC
Q 042564 176 RAQRA 180 (498)
Q Consensus 176 ~p~~p 180 (498)
+|+..
T Consensus 286 ~p~~~ 290 (478)
T 1v59_A 286 RPYIA 290 (478)
T ss_dssp EECCT
T ss_pred CcCCC
Confidence 88765
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0001 Score=75.80 Aligned_cols=99 Identities=24% Similarity=0.350 Sum_probs=77.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC--------C----------C------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL--------R----------G------------------------ 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l--------~----------~------------------------ 239 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+..- + .
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 87 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP 87 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence 479999999999999999999999999999875100 0 0
Q ss_pred --------------------CC-HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe---EEEEECCCe--EEEcCEEEEe
Q 042564 240 --------------------FD-DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG---VKVITDHGE--EIVADVVLFA 293 (498)
Q Consensus 240 --------------------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~D~vi~a 293 (498)
++ ..+.+.+.+.+++.|++++++++|+++..+++. +.+...+|+ ++.+|.||.|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~A 167 (512)
T 3e1t_A 88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDA 167 (512)
T ss_dssp SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEEC
T ss_pred cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEEC
Confidence 00 234455677777899999999999999987775 344455674 7999999999
Q ss_pred cCCCcCC
Q 042564 294 TGRAPNT 300 (498)
Q Consensus 294 ~G~~p~~ 300 (498)
+|..+..
T Consensus 168 dG~~S~v 174 (512)
T 3e1t_A 168 SGNRTRV 174 (512)
T ss_dssp CCTTCSS
T ss_pred CCcchHH
Confidence 9987654
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1.8e-05 Score=80.84 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=74.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCCC---C----------CHHHHHHHHHHH-HhCCCEEEcCccE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPLRG---F----------DDEMRAVVARNL-EGRGINLHPRTTI 265 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l~~---~----------~~~~~~~l~~~l-~~~Gv~i~~~~~v 265 (498)
.+|+|||+|+.|+.+|..|++. |.+|+++++.+..... + ..++.....+.+ +..|++++.++.+
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v 116 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV 116 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence 4899999999999999999986 8899999987643100 0 011111223445 3449999999999
Q ss_pred EEEEEeCCeEEEEE-CCCe--EEEcCEEEEecCCCcCCCC
Q 042564 266 KELIKSEEGVKVIT-DHGE--EIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 266 ~~i~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~~~ 302 (498)
..+..+++.+.+.. .+|+ ++.+|.+|+|+|.+|....
T Consensus 117 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~ 156 (480)
T 3cgb_A 117 TKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPE 156 (480)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred EEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCC
Confidence 99976666666665 4565 7999999999999887653
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5.8e-05 Score=75.34 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=75.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCCCCCC-----CC----------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKELPLRG-----FD---------------------------------- 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~~l~~-----~~---------------------------------- 241 (498)
.+|+|||+|+.|+.+|..|++.|.+ |+++++.+.+-+. +.
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g~ 84 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA 84 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCCC
Confidence 4799999999999999999999999 9999987643110 00
Q ss_pred ----------------------HHHHHHHHHHHHhC-C-CEEEcCccEEEEEEeCCeEEEEECC---C--eEEEcCEEEE
Q 042564 242 ----------------------DEMRAVVARNLEGR-G-INLHPRTTIKELIKSEEGVKVITDH---G--EEIVADVVLF 292 (498)
Q Consensus 242 ----------------------~~~~~~l~~~l~~~-G-v~i~~~~~v~~i~~~~~~~~v~~~~---g--~~i~~D~vi~ 292 (498)
..+.+.+.+.+.+. | ++++++++|+++.. ++++.+++.+ | +++.+|.||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~ 163 (410)
T 3c96_A 85 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVG 163 (410)
T ss_dssp EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEE
T ss_pred EEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEE
Confidence 13444556666553 5 68999999999987 5667777654 7 5799999999
Q ss_pred ecCCCcCC
Q 042564 293 ATGRAPNT 300 (498)
Q Consensus 293 a~G~~p~~ 300 (498)
|.|..+..
T Consensus 164 AdG~~S~v 171 (410)
T 3c96_A 164 ADGIHSAV 171 (410)
T ss_dssp CCCTTCHH
T ss_pred CCCccchh
Confidence 99987654
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.2e-06 Score=83.49 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=70.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++. ++.++.....+.+++.||++++++.+..
T Consensus 122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---- 197 (456)
T 2vdc_G 122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGR---- 197 (456)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTT----
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEecc----
Confidence 468999999999999999999999999999998754 333 4677888888889999999999976631
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
.+.++++ .+.+|.||+|+|..+
T Consensus 198 ----~v~~~~~-~~~~d~vvlAtG~~~ 219 (456)
T 2vdc_G 198 ----DASLPEL-RRKHVAVLVATGVYK 219 (456)
T ss_dssp ----TBCHHHH-HSSCSEEEECCCCCE
T ss_pred ----EEEhhHh-HhhCCEEEEecCCCC
Confidence 1222222 256999999999863
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=97.91 E-value=7.3e-06 Score=86.27 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=42.5
Q ss_pred hCCCEEEcCccEEEEEEeCC--e-EEEEEC---CCe--EEEcCEEEEecCCCcCCCCCCcccCCce
Q 042564 254 GRGINLHPRTTIKELIKSEE--G-VKVITD---HGE--EIVADVVLFATGRAPNTKRLNLKAVGVE 311 (498)
Q Consensus 254 ~~Gv~i~~~~~v~~i~~~~~--~-~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~ 311 (498)
+.|+++++++.|++|..+++ . ..|++. +|+ ++.+|.||+|+|..|+..+|.+...|..
T Consensus 272 ~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~ 337 (623)
T 3pl8_A 272 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQL 337 (623)
T ss_dssp EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSCC
T ss_pred CCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCcc
Confidence 34899999999999987643 2 344442 454 6889999999999999987544444444
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=4.2e-05 Score=78.51 Aligned_cols=98 Identities=11% Similarity=0.160 Sum_probs=68.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ .+ .+ +
T Consensus 177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~------~~---~~---------l-------------------------- 212 (500)
T 1onf_A 177 KKIGIVGSGYIAVELINVIKRLGIDSYIFAR------GN---RI---------L-------------------------- 212 (500)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECS------SS---SS---------C--------------------------
T ss_pred CeEEEECChHHHHHHHHHHHHcCCeEEEEec------CC---cc---------C--------------------------
Confidence 5799999999999999999999999999993 11 10 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC---CEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP---NEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~---~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+.++. .+...+.+.+++.||+++.++ +..++. +.+.+.+.+|+. .+.+|.||+|+|.+|+.
T Consensus 213 --~~~d~------------~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~-~~~~D~vi~a~G~~p~~ 277 (500)
T 1onf_A 213 --RKFDE------------SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRI-YEHFDHVIYCVGRSPDT 277 (500)
T ss_dssp --TTSCH------------HHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCE-EEEESEEEECCCBCCTT
T ss_pred --cccch------------hhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcE-EEECCEEEECCCCCcCC
Confidence 01110 111223455677899999886 555542 236777777752 38999999999999876
Q ss_pred C
Q 042564 180 A 180 (498)
Q Consensus 180 p 180 (498)
.
T Consensus 278 ~ 278 (500)
T 1onf_A 278 E 278 (500)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.89 E-value=5.8e-05 Score=76.73 Aligned_cols=97 Identities=20% Similarity=0.081 Sum_probs=72.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-------------------------------CCCH-HH------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR-------------------------------GFDD-EM------ 244 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~-------------------------------~~~~-~~------ 244 (498)
+|+|||+|+.|+.+|..+++.|.+|+++++.+.+-. .++. .+
T Consensus 6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (466)
T 3l8k_A 6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKDY 85 (466)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHHh
Confidence 699999999999999999999999999996654310 0111 01
Q ss_pred ----H--HHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeE--EEcCEEEEecCCCcCCCC
Q 042564 245 ----R--AVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEE--IVADVVLFATGRAPNTKR 302 (498)
Q Consensus 245 ----~--~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~--i~~D~vi~a~G~~p~~~~ 302 (498)
. ..+.+.+++.|++++.+ .+..+ +.+.+.|...+|++ +.+|.+|+|+|.+|....
T Consensus 86 ~~~l~~~~~~~~~~~~~~v~~~~g-~v~~i--d~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~ 148 (466)
T 3l8k_A 86 VQELRFKQHKRNMSQYETLTFYKG-YVKIK--DPTHVIVKTDEGKEIEAETRYMIIASGAETAKLR 148 (466)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEESE-EEEEE--ETTEEEEEETTSCEEEEEEEEEEECCCEEECCCC
T ss_pred heeccccchHHHHHHhCCCEEEEe-EEEEe--cCCeEEEEcCCCcEEEEecCEEEECCCCCccCCC
Confidence 1 33444556679999887 56666 35567788888888 999999999999887654
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=9.8e-06 Score=80.23 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=36.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
++||+|||||++|+++|..|++.|.+|+|+|+ ...+||.|.
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~---------~~~~GG~~~ 43 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQ---------RDHIGGNSY 43 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEES---------SSSSSGGGC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEe---------cCCcCCccc
Confidence 37999999999999999999999999999995 466788873
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3e-05 Score=78.88 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=68.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ .+ .+ +|
T Consensus 172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~------~~---~~---------l~------------------------- 208 (464)
T 2a8x_A 172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEF------LP---RA---------LP------------------------- 208 (464)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SS---SS---------ST-------------------------
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEc------CC---cc---------cc-------------------------
Confidence 5899999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEeC-CCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQL-DGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~~-~g~~~~~~~d~liiAtG~~p~~ 179 (498)
.++. .+...+.+.+++.||+++.++ +..++. +.+.+... +|+..++.+|.|++|+|.+|+.
T Consensus 209 ---~~~~------------~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~ 273 (464)
T 2a8x_A 209 ---NEDA------------DVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV 273 (464)
T ss_dssp ---TSCH------------HHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECC
T ss_pred ---ccCH------------HHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccC
Confidence 0110 011223344566799999875 445532 33555543 5544589999999999998876
Q ss_pred CC
Q 042564 180 AP 181 (498)
Q Consensus 180 p~ 181 (498)
..
T Consensus 274 ~~ 275 (464)
T 2a8x_A 274 EG 275 (464)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=7.1e-05 Score=78.05 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=75.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC---------------------------------------C--
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG---------------------------------------F-- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~---------------------------------------~-- 240 (498)
-+|+|||+|..|+..|..+++.|.+|+++++.+.+... .
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~ 201 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI 201 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 37999999999999999999999999999987632100 0
Q ss_pred -----------------------------------------------CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeC-
Q 042564 241 -----------------------------------------------DDEMRAVVARNLEGRGINLHPRTTIKELIKSE- 272 (498)
Q Consensus 241 -----------------------------------------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~- 272 (498)
...+.+.+.+.+++.||++++++.|+++..++
T Consensus 202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~ 281 (566)
T 1qo8_A 202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD 281 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC
Confidence 12244556677788899999999999998776
Q ss_pred Ce-EEEEE--CCCe--EEEcCEEEEecCCCcC
Q 042564 273 EG-VKVIT--DHGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 273 ~~-~~v~~--~~g~--~i~~D~vi~a~G~~p~ 299 (498)
+. ..|++ .+|+ ++.+|.||+|+|-...
T Consensus 282 g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 282 HSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp SBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred CcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 54 23443 4675 6889999999997654
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.3e-05 Score=82.02 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=36.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCC-CcEEEEccCCCCCCCCcCCCcccccc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFG-AKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
..+||+|||||++|+++|+.|++.| .+|+|+|+ ...+||.|.
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~---------~~~~GG~~~ 50 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYEC---------NDTPGGLSR 50 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEES---------SSSSSGGGC
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeC---------CCCCCCeee
Confidence 4589999999999999999999998 79999995 456788764
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.1e-05 Score=79.32 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=71.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCCCC----------C--CCH--HHHHHHHHHHHhCCCEEEcCccEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELPLR----------G--FDD--EMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~l~----------~--~~~--~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
+|+|||+|+.|+.+|..++++| .+|+++++.+...- . .+. .+.....+.+++.+++++.+++|.
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~ 81 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI 81 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence 5999999999999999999887 47999998764210 0 000 011112344567799999999999
Q ss_pred EEEEeCCeEEEEEC---CCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITD---HGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~---~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.|..+.....+... ++.++.+|.+|+|||.+|+...
T Consensus 82 ~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~ 120 (437)
T 4eqs_A 82 AINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLG 120 (437)
T ss_dssp EEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCC
T ss_pred EEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccccc
Confidence 99776665555443 2346889999999999987654
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.2e-06 Score=82.91 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
+.+.+.+.+.+ ++|+++++|++|..+++++.|++.+| ++.+|.||+|++.
T Consensus 238 l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~ 287 (475)
T 3lov_A 238 LIERLEEVLER--SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPH 287 (475)
T ss_dssp HHHHHHHHCSS--CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCH
T ss_pred HHHHHHhhccC--CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCH
Confidence 44444444332 79999999999998888888888888 7999999999985
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.8e-05 Score=77.42 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=66.5
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+++++ .+ .+ .|
T Consensus 175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~------~~---~~---------l~------------------------- 211 (468)
T 2qae_A 175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEF------AP---RC---------AP------------------------- 211 (468)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SS---SS---------ST-------------------------
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCEEEEEec------CC---cc---------cc-------------------------
Confidence 5899999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHH-HhCCcEEEEeE-EEEEeC--CEEEEEeC--CCceEEEEcCeEEEcCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLL-SNAGVKLYEGE-GKIVGP--NEVEVTQL--DGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~~~~~~-~~~i~~--~~~~v~~~--~g~~~~~~~d~liiAtG~~p 177 (498)
.++. .+...+.+.+ ++.||+++.++ +..++. +.+.+... +|+..++.+|.||+|+|.+|
T Consensus 212 ---~~d~------------~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p 276 (468)
T 2qae_A 212 ---TLDE------------DVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRP 276 (468)
T ss_dssp ---TSCH------------HHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEE
T ss_pred ---cCCH------------HHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCccc
Confidence 0110 0122334455 67899999875 555543 23555543 55335799999999999988
Q ss_pred CCC
Q 042564 178 QRA 180 (498)
Q Consensus 178 ~~p 180 (498)
+..
T Consensus 277 ~~~ 279 (468)
T 2qae_A 277 FTG 279 (468)
T ss_dssp CCT
T ss_pred CCC
Confidence 764
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.2e-05 Score=77.59 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=69.2
Q ss_pred ccEEEECCChhHHHHHHHHHhC---CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 24 FDLFVIGAGSGGVRAARFSANF---GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~---g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
.+++|||||+.|+..|..|++. |.+|+++++ .+ .+ +|
T Consensus 188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~------~~---~~---------l~---------------------- 227 (490)
T 1fec_A 188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR------GD---MI---------LR---------------------- 227 (490)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES------SS---SS---------ST----------------------
T ss_pred CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEc------CC---Cc---------cc----------------------
Confidence 5899999999999999999998 999999993 11 10 00
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC---CEEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP---NEVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~---~~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
.++. .+...+.+.+++.||+++.++ +..++. ..+.|.+.+|+ ++.+|.||+|+|.+
T Consensus 228 ------~~d~------------~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~--~i~~D~vv~a~G~~ 287 (490)
T 1fec_A 228 ------GFDS------------ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGA--EADYDVVMLAIGRV 287 (490)
T ss_dssp ------TSCH------------HHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSC--EEEESEEEECSCEE
T ss_pred ------ccCH------------HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCc--EEEcCEEEEccCCC
Confidence 1110 112233455667899999985 555532 24677777775 79999999999998
Q ss_pred CCCC
Q 042564 177 AQRA 180 (498)
Q Consensus 177 p~~p 180 (498)
|+..
T Consensus 288 p~~~ 291 (490)
T 1fec_A 288 PRSQ 291 (490)
T ss_dssp ESCT
T ss_pred cCcc
Confidence 8764
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=6.9e-05 Score=76.28 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=72.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-------------------------------------CCH-H
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-------------------------------------FDD-E 243 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-------------------------------------~~~-~ 243 (498)
.+|+|||+|+.|+.+|..+++.|.+|+++++.+.+-.. ++. .
T Consensus 7 ~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 86 (470)
T 1dxl_A 7 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA 86 (470)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCHHH
Confidence 57999999999999999999999999999997643110 010 0
Q ss_pred -----------HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC--eEEEcCEEEEecCCCcCCCC
Q 042564 244 -----------MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG--EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 244 -----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~ 302 (498)
+.+.+.+.+++.|++++.++.+. + +.+.+.+.+.+| +++.+|.+|+|+|.+|....
T Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~ 155 (470)
T 1dxl_A 87 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-V--SPSEISVDTIEGENTVVKGKHIIIATGSDVKSLP 155 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-E--ETTEEEECCSSSCCEEEECSEEEECCCEEECCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCC
Confidence 11123455667799999987553 3 455667777777 68999999999999887643
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00013 Score=74.24 Aligned_cols=99 Identities=24% Similarity=0.331 Sum_probs=71.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC----------------------------C----CC----CCC-HH
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL----------------------------P----LR----GFD-DE 243 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~----------------------------~----l~----~~~-~~ 243 (498)
..+|+|||+|+.|+.+|..+++.|.+|+++++... . ++ ..+ ..
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSK 83 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCHHH
Confidence 35899999999999999999999999999998730 0 10 011 11
Q ss_pred HHH-------H-----HHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCC--eEEEcCEEEEecCCCcCCCC
Q 042564 244 MRA-------V-----VARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHG--EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 244 ~~~-------~-----l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~ 302 (498)
+.. . ..+.+++. ||+++.+. +..+ +.+.+.+.+.+| +++.+|.+|+|||.+|....
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~--~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~ 154 (467)
T 1zk7_A 84 LLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFK--DDQSLTVRLNEGGERVVMFDRCLVATGASPAVPP 154 (467)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEE--ETTEEEEEETTSSEEEEECSEEEECCCEEECCCC
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEc--cCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCC
Confidence 211 1 22445566 89998873 5555 345677878888 67999999999999887654
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.5e-05 Score=77.53 Aligned_cols=97 Identities=20% Similarity=0.307 Sum_probs=68.9
Q ss_pred ccEEEECCChhHHHHHHHHHhC---CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 24 FDLFVIGAGSGGVRAARFSANF---GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~---g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
.+++|||||+.|+..|..|++. |.+|+++++ .+ .+ +|
T Consensus 192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~------~~---~~---------l~---------------------- 231 (495)
T 2wpf_A 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYR------NN---LI---------LR---------------------- 231 (495)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEES------SS---SS---------CT----------------------
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEc------CC---cc---------cc----------------------
Confidence 5799999999999999999998 999999993 11 10 00
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC---CEEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP---NEVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~---~~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
.++. .+...+.+.+++.||+++.++ +..++. ..+.|.+.+|+ ++.+|.||+|+|.+
T Consensus 232 ------~~d~------------~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~--~i~~D~vv~a~G~~ 291 (495)
T 2wpf_A 232 ------GFDE------------TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGK--TLDVDVVMMAIGRI 291 (495)
T ss_dssp ------TSCH------------HHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSC--EEEESEEEECSCEE
T ss_pred ------ccCH------------HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCc--EEEcCEEEECCCCc
Confidence 1111 111223445667899999985 555532 23677777775 79999999999998
Q ss_pred CCCC
Q 042564 177 AQRA 180 (498)
Q Consensus 177 p~~p 180 (498)
|+..
T Consensus 292 p~~~ 295 (495)
T 2wpf_A 292 PRTN 295 (495)
T ss_dssp ECCG
T ss_pred cccc
Confidence 8764
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.3e-05 Score=82.36 Aligned_cols=52 Identities=15% Similarity=0.336 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe----EEEcCEEEEecCCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE----EIVADVVLFATGRA 297 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~----~i~~D~vi~a~G~~ 297 (498)
.+.+.+.+.+.. +++++++|++|..+++++.|++.+|+ ++.+|.||++++..
T Consensus 242 ~l~~~l~~~l~~---~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~ 297 (498)
T 2iid_A 242 KLPTAMYRDIQD---KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSR 297 (498)
T ss_dssp HHHHHHHHHTGG---GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHH
T ss_pred HHHHHHHHhccc---ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChH
Confidence 455666665544 78999999999988778888876664 58999999999854
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00016 Score=75.36 Aligned_cols=98 Identities=21% Similarity=0.290 Sum_probs=74.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC---------------------------------------C--
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG---------------------------------------F-- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~---------------------------------------~-- 240 (498)
.+|+|||+|..|+..|..+.+.|.+|+++++.+.+... .
T Consensus 127 ~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~ 206 (572)
T 1d4d_A 127 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP 206 (572)
T ss_dssp CSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 48999999999999999999999999999987632100 0
Q ss_pred -----------------------------------------------CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeC-
Q 042564 241 -----------------------------------------------DDEMRAVVARNLEGRGINLHPRTTIKELIKSE- 272 (498)
Q Consensus 241 -----------------------------------------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~- 272 (498)
...+...+.+.+++.||++++++.|.++..++
T Consensus 207 ~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~ 286 (572)
T 1d4d_A 207 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS 286 (572)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--
T ss_pred HHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECCC
Confidence 11344556677788899999999999997665
Q ss_pred Ce-EEEEE--CCCe--EEEcCEEEEecCCCcC
Q 042564 273 EG-VKVIT--DHGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 273 ~~-~~v~~--~~g~--~i~~D~vi~a~G~~p~ 299 (498)
+. ..|.+ .+|+ ++.+|.||+|+|..++
T Consensus 287 g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 287 GKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred CeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 43 33443 3665 6889999999997664
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.7e-05 Score=77.74 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=67.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ .+ .+ .|
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~------~~---~~---------l~------------------------- 222 (479)
T 2hqm_A 186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIR------GE---TV---------LR------------------------- 222 (479)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCEEEEECS------SS---SS---------CT-------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEe------CC---cc---------cc-------------------------
Confidence 5799999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CE--EEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NE--VEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~--~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
.++. .+...+.+.+++.||+++.++ +..++. +. +.|.+.+|+ .++.+|.||+|+|.+|+
T Consensus 223 ---~~d~------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~-~~i~~D~vv~a~G~~p~ 286 (479)
T 2hqm_A 223 ---KFDE------------CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSK-SIDDVDELIWTIGRKSH 286 (479)
T ss_dssp ---TSCH------------HHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSC-EEEEESEEEECSCEEEC
T ss_pred ---ccCH------------HHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCc-EEEEcCEEEECCCCCCc
Confidence 0110 011123344566799999885 555542 22 667777772 48999999999999887
Q ss_pred C
Q 042564 179 R 179 (498)
Q Consensus 179 ~ 179 (498)
.
T Consensus 287 ~ 287 (479)
T 2hqm_A 287 L 287 (479)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2e-05 Score=80.87 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=71.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-----C-----CCCH-HHHHHHHHHH--HhCCCEEEcCccEEEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-----R-----GFDD-EMRAVVARNL--EGRGINLHPRTTIKEL 268 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-----~-----~~~~-~~~~~l~~~l--~~~Gv~i~~~~~v~~i 268 (498)
++|+|||+|+.|+.+|..|.+.+.+|++|++.+..+ + .+++ ++...+.+.+ ...+++++.. ++++|
T Consensus 43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~I 121 (502)
T 4g6h_A 43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATSI 121 (502)
T ss_dssp CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEEE
T ss_pred CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEEE
Confidence 489999999999999999998899999999876421 1 1121 1222233333 2347888765 78888
Q ss_pred EEeCCeEEEEE------------------CCCeEEEcCEEEEecCCCcCCCC
Q 042564 269 IKSEEGVKVIT------------------DHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 269 ~~~~~~~~v~~------------------~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
..+.+.+.+.. .++.++++|.+|+|+|.+|+...
T Consensus 122 D~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ 173 (502)
T 4g6h_A 122 NPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFG 173 (502)
T ss_dssp EGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTT
T ss_pred EhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCC
Confidence 77666655432 34668999999999999998764
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=5.8e-05 Score=76.92 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=71.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC--------------------------------------CCCH-
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR--------------------------------------GFDD- 242 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~--------------------------------------~~~~- 242 (498)
.+++|||+|+.|+.+|..+++.|.+|+++++.+.+-. ..+.
T Consensus 7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (474)
T 1zmd_A 7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNLD 86 (474)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCHH
Confidence 4799999999999999999999999999999763200 0010
Q ss_pred H-----------HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECC-C-eEEEcCEEEEecCCCcCCCC
Q 042564 243 E-----------MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH-G-EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 243 ~-----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~-g-~~i~~D~vi~a~G~~p~~~~ 302 (498)
. +...+.+.+++.||+++.++.+ .+ +.+.+.|.+.+ + +++.+|.+|+|||.+|....
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~--~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~ 156 (474)
T 1zmd_A 87 KMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK-IT--GKNQVTATKADGGTQVIDTKNILIATGSEVTPFP 156 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EE--ETTEEEEECTTSCEEEEEEEEEEECCCEEECCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ee--cCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCC
Confidence 1 1112355677789999988543 33 45567777776 4 57999999999999887653
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00021 Score=74.71 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=76.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC------CCcEEEEeeCCCCCCC------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM------GSTVDLLFRKELPLRG------------------------------------ 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~------g~~V~lv~~~~~~l~~------------------------------------ 239 (498)
-+|+|||+|+.|+-+|..|++. |.+|.++++.+.+-..
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~ 115 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG 115 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence 4799999999999999999998 9999999986432100
Q ss_pred ---------C---C--------------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEEEC------CC---
Q 042564 240 ---------F---D--------------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVITD------HG--- 282 (498)
Q Consensus 240 ---------~---~--------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~~------~g--- 282 (498)
+ + ..+.+.+.+.+++.||++++++.+.++..++++ + .|.+. +|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~ 195 (584)
T 2gmh_A 116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 195 (584)
T ss_dssp EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence 0 0 145566778888889999999999999876643 3 36665 33
Q ss_pred ------eEEEcCEEEEecCCCcCC
Q 042564 283 ------EEIVADVVLFATGRAPNT 300 (498)
Q Consensus 283 ------~~i~~D~vi~a~G~~p~~ 300 (498)
.++.+|.||.|.|..+..
T Consensus 196 ~~~~~g~~i~Ad~VV~AdG~~S~v 219 (584)
T 2gmh_A 196 TTFERGLELHAKVTIFAEGCHGHL 219 (584)
T ss_dssp EEEECCCEEECSEEEECCCTTCHH
T ss_pred cccCCceEEECCEEEEeeCCCchH
Confidence 579999999999998753
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=6e-05 Score=77.37 Aligned_cols=97 Identities=23% Similarity=0.311 Sum_probs=68.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..+++.|.+|+++++ .+ .+ +
T Consensus 183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~------~~---~~---------l-------------------------- 218 (499)
T 1xdi_A 183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVAS------QD---HV---------L-------------------------- 218 (499)
T ss_dssp SSEEEESCSHHHHHHHHHHHHTTCCEEEECS------SS---SS---------S--------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEc------CC---cc---------c--------------------------
Confidence 5799999999999999999999999999993 11 10 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+.++. .+...+.+.+++.||+++.++ +..++. +.+.+...+|+ ++.+|.||+|+|.+|+..
T Consensus 219 --~~~d~------------~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~--~i~aD~Vv~a~G~~p~~~ 282 (499)
T 1xdi_A 219 --PYEDA------------DAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGR--TVEGSHALMTIGSVPNTS 282 (499)
T ss_dssp --CCSSH------------HHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSC--EEEESEEEECCCEEECCS
T ss_pred --cccCH------------HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCc--EEEcCEEEECCCCCcCCC
Confidence 00111 112223445677899999875 555532 34667666664 799999999999988764
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=5.9e-05 Score=77.89 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=68.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||..|+..|..+++.|.+|+++++ .+ .+ .|
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~------~~---~~---------l~------------------------- 251 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVR------TE---PL---------KL------------------------- 251 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SC---TT---------TT-------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEe------cC---cc---------cc-------------------------
Confidence 6899999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CE----EEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NE----VEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~----~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
.++. .+...+.+.+++.|++++.++ +..++. +. +.|.+.+|+ .++.+|.||+|+|.+
T Consensus 252 ---~~~~------------~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~-~~i~aD~Vv~A~G~~ 315 (523)
T 1mo9_A 252 ---IKDN------------ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGE-MRIETDFVFLGLGEQ 315 (523)
T ss_dssp ---CCSH------------HHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEE-EEEECSCEEECCCCE
T ss_pred ---cccH------------HHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCc-EEEEcCEEEECcCCc
Confidence 0110 112223455667899999885 555532 33 667776652 378999999999998
Q ss_pred CCCC
Q 042564 177 AQRA 180 (498)
Q Consensus 177 p~~p 180 (498)
|+..
T Consensus 316 p~~~ 319 (523)
T 1mo9_A 316 PRSA 319 (523)
T ss_dssp ECCH
T ss_pred cCCc
Confidence 8764
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00016 Score=73.85 Aligned_cols=97 Identities=18% Similarity=0.103 Sum_probs=70.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC----------------------------------C--CCCH-H-
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL----------------------------------R--GFDD-E- 243 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l----------------------------------~--~~~~-~- 243 (498)
.+|+|||+|+.|+.+|..+++.|.+|+++++.+.+- . .++. .
T Consensus 7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~~ 86 (482)
T 1ojt_A 7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDML 86 (482)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence 379999999999999999999999999999854321 0 0111 1
Q ss_pred ----------HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC------------eEEEcCEEEEecCCCcCCC
Q 042564 244 ----------MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG------------EEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 244 ----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g------------~~i~~D~vi~a~G~~p~~~ 301 (498)
+.+.+.+.+++.|++++.++.+. .+.+.+.+.+.+| .++.+|.+|+|+|.+|...
T Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~ 163 (482)
T 1ojt_A 87 RAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF---LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKL 163 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE---EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE---ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCC
Confidence 11123456677899999886543 2445566665555 5799999999999998764
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.75 E-value=9.5e-05 Score=76.25 Aligned_cols=96 Identities=22% Similarity=0.198 Sum_probs=69.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-.|..+++.|.+|+|+++ ..+ +
T Consensus 224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~----------~~~---------L-------------------------- 258 (542)
T 4b1b_A 224 GKTLVVGASYVALECSGFLNSLGYDVTVAVR----------SIV---------L-------------------------- 258 (542)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEEES----------SCS---------S--------------------------
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCeEEEecc----------ccc---------c--------------------------
Confidence 5799999999999999999999999999983 110 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEE--EeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKI--VGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~--i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+.+|. ++...+...+++.|+.++.+. +.. -..+.+.|...++. .+.+|.|++|+|-+|+..
T Consensus 259 --~~~D~------------ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~--~~~~D~vLvAvGR~Pnt~ 322 (542)
T 4b1b_A 259 --RGFDQ------------QCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKT--SELYDTVLYAIGRKGDID 322 (542)
T ss_dssp --TTSCH------------HHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSC--EEEESEEEECSCEEESCG
T ss_pred --cccch------------hHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCC--eEEEEEEEEcccccCCcc
Confidence 11111 112233455677899999886 333 24567777777765 778999999999888764
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00016 Score=73.91 Aligned_cols=95 Identities=18% Similarity=0.125 Sum_probs=68.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC----------------------------C---------CC---
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR----------------------------G---------FD--- 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~----------------------------~---------~~--- 241 (498)
.+|+|||+|+.|+.+|..+++.|.+|+++++.+.+-. . ++
T Consensus 26 ~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 105 (491)
T 3urh_A 26 YDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNLQK 105 (491)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCHHH
Confidence 5799999999999999999999999999998654310 0 00
Q ss_pred ---------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC--eEEEcCEEEEecCCCcC
Q 042564 242 ---------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG--EEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ---------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~ 299 (498)
..+...+...+++.+++++.+.... .+.+.+.+...+| +++.+|.+|+|||.+|.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~ 171 (491)
T 3urh_A 106 MMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKV---LGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA 171 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE---CSSSEEEEECTTSCEEEEECSEEEECCCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ecCCEEEEEeCCCceEEEEeCEEEEccCCCCC
Confidence 0111223455677899988774322 2445577777777 57999999999998874
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.72 E-value=8.9e-05 Score=75.89 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=66.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+++++ .+ .+.
T Consensus 175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~------~~---~~l----------------------------------- 210 (492)
T 3ic9_A 175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGR------SG---SVA----------------------------------- 210 (492)
T ss_dssp SEEEEESSCHHHHHHHHHHHHTTCEEEEECC------TT---CCT-----------------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEE------CC---ccc-----------------------------------
Confidence 5899999999999999999999999999993 11 100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEeC--CCceEEEEcCeEEEcCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQL--DGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~~--~g~~~~~~~d~liiAtG~~p~ 178 (498)
+.++. .+...+.+.+++. |+++.++ +..+ +.+.+.+... +|+..++.+|.|++|+|.+|+
T Consensus 211 --~~~d~------------~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~ 275 (492)
T 3ic9_A 211 --NLQDE------------EMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN 275 (492)
T ss_dssp --TCCCH------------HHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred --ccCCH------------HHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence 00110 1112233344555 8888765 4444 3345556553 564468999999999999887
Q ss_pred CCC
Q 042564 179 RAP 181 (498)
Q Consensus 179 ~p~ 181 (498)
...
T Consensus 276 ~~~ 278 (492)
T 3ic9_A 276 VDK 278 (492)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=2.6e-05 Score=79.49 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhC--------CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 243 EMRAVVARNLEGR--------GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 243 ~~~~~l~~~l~~~--------Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.+.+.+.+.+.+. |.+++++++|++|..+++++.|++.+|+++.+|.||+|++.
T Consensus 207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~ 268 (472)
T 1b37_A 207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL 268 (472)
T ss_dssp HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCH
Confidence 4556666665544 67899999999999888888899999989999999999985
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.70 E-value=7.7e-05 Score=74.36 Aligned_cols=96 Identities=23% Similarity=0.289 Sum_probs=70.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCC-----------CC--CC-C-------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKEL-----------PL--RG-F------------------------- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~-----------~l--~~-~------------------------- 240 (498)
.+|+|||+|.+|+-+|..|++. |.+|+++++... .+ +. +
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 116 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKTL 116 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSCCC
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCCCC
Confidence 4799999999999999999999 999999997531 01 00 0
Q ss_pred ----------------------------C--------------------------HHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 241 ----------------------------D--------------------------DEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 241 ----------------------------~--------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
. ..+.+.+.+.+++.|++++++++|.
T Consensus 117 ~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~ 196 (405)
T 3c4n_A 117 EVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAE 196 (405)
T ss_dssp CEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEE
T ss_pred cEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 0 1255567777888899999999999
Q ss_pred ---------EEEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 267 ---------ELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 267 ---------~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
++..+++.+.|.+.+| ++.+|.||+|+|...
T Consensus 197 ~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 197 LVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp EETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred eccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence 8866555565666666 799999999999764
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.69 E-value=3.4e-05 Score=79.08 Aligned_cols=99 Identities=21% Similarity=0.218 Sum_probs=73.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC----------CC---CHHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR----------GF---DDEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~----------~~---~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
.+|+|||+|+.|+.+|..|++. .+|+++++.+.+-. .+ ..++...+.+.+ +.|+++++++.+.++
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i 186 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV 186 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence 4799999999999999999999 99999998775411 11 123333444444 569999999999888
Q ss_pred EEeCCeEEEEE-CCCe--EEEcCEEEEecCCCcCCCC
Q 042564 269 IKSEEGVKVIT-DHGE--EIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 269 ~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~~~ 302 (498)
..+++.+.+.. .+++ .+.+|.+|+|+|..|....
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~ 223 (493)
T 1y56_A 187 FDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTML 223 (493)
T ss_dssp EECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCC
T ss_pred EcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCC
Confidence 77665544433 4554 6899999999999887643
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=3e-05 Score=79.42 Aligned_cols=97 Identities=22% Similarity=0.330 Sum_probs=69.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCC------CC---CCH--HHHHH--------------------H
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPL------RG---FDD--EMRAV--------------------V 248 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l------~~---~~~--~~~~~--------------------l 248 (498)
.+++|||+|+.|+.+|..|++. +.+|+++++.+.+. +. ... ..... +
T Consensus 12 ~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (493)
T 1m6i_A 12 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 91 (493)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred CCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHhh
Confidence 4799999999999999998876 88999999876431 00 000 00000 0
Q ss_pred H--HH---HHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 249 A--RN---LEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 249 ~--~~---l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
. +. +.+.||++++++.|.++..+.. .|.+.+|+++.+|.+|+|||.+|..
T Consensus 92 ~~~~~l~~~~~~gv~~~~g~~v~~id~~~~--~V~~~~g~~i~yd~lviATGs~p~~ 146 (493)
T 1m6i_A 92 VSAQDLPHIENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTPRS 146 (493)
T ss_dssp BCTTTTTTSTTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEEECC
T ss_pred cchhhhhhhhcCCeEEEcCCEEEEEECCCC--EEEECCCCEEECCEEEECCCCCCCC
Confidence 0 00 1245899999999999875543 5777889899999999999998864
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00019 Score=73.16 Aligned_cols=99 Identities=24% Similarity=0.307 Sum_probs=67.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ .+ .+ +
T Consensus 181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~------~~---~~---------l-------------------------- 216 (476)
T 3lad_A 181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEA------MD---KF---------L-------------------------- 216 (476)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEES------SS---SS---------S--------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEec------CC---Cc---------C--------------------------
Confidence 5799999999999999999999999999993 11 10 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCc-eEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGT-KLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~-~~~~~~d~liiAtG~~p~~ 179 (498)
+.++. .+...+.+.+++.||+++.++ +..++ .+.+.+...++. ...+.+|.||+|+|.+|+.
T Consensus 217 --~~~~~------------~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~ 282 (476)
T 3lad_A 217 --PAVDE------------QVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT 282 (476)
T ss_dssp --TTSCH------------HHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred --cccCH------------HHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence 00110 112223445667899999885 44443 334555544321 3578999999999988876
Q ss_pred C
Q 042564 180 A 180 (498)
Q Consensus 180 p 180 (498)
.
T Consensus 283 ~ 283 (476)
T 3lad_A 283 T 283 (476)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=1.3e-05 Score=81.18 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCCC--------CCC--CHHHHHHHHHHHHhCCCEEEcCccEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELPL--------RGF--DDEMRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~l--------~~~--~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
.+++|+|||+|+.|+.+|..|.+.| .+|+++++.+.+. +.+ ..++...+.+.+++.||+++.++.+.
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~- 83 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG- 83 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence 4578999999999999999999988 8999999987654 322 23566777788888999999987662
Q ss_pred EEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 268 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
.. |.+.+. .+.+|.||+|||..|
T Consensus 84 -----~~--V~~~~~-~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 84 -----RD--VTVQEL-QDAYHAVVLSYGAED 106 (460)
T ss_dssp -----TT--BCHHHH-HHHSSEEEECCCCCE
T ss_pred -----eE--EEeccc-eEEcCEEEEecCcCC
Confidence 11 333332 368999999999885
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00035 Score=71.63 Aligned_cols=56 Identities=20% Similarity=0.099 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE---CCCe--EEEcCEEEEecCCCcC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT---DHGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~ 299 (498)
+...+.+.+++.|++++.+++|+++..+++...|.+ .+|+ ++.+|.||.|+|....
T Consensus 151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~ 211 (501)
T 2qcu_A 151 LVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVK 211 (501)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence 445566777788999999999999988776566666 3565 6899999999997643
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0002 Score=73.04 Aligned_cols=99 Identities=22% Similarity=0.203 Sum_probs=67.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ .+ .+ +|
T Consensus 188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~------~~---~~---------l~------------------------- 224 (478)
T 3dk9_A 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIR------HD---KV---------LR------------------------- 224 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SS---SS---------CT-------------------------
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCeEEEEEe------CC---cc---------cc-------------------------
Confidence 5899999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC---C-EEEEEeCC---Cce--EEEEcCeEEEcC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP---N-EVEVTQLD---GTK--LSYSAKHILIAT 173 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~---~-~~~v~~~~---g~~--~~~~~d~liiAt 173 (498)
.++. .+...+.+.+++.||+++.++ +..++. . .+.+...+ |+. ..+.+|.|++|+
T Consensus 225 ---~~d~------------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~ 289 (478)
T 3dk9_A 225 ---SFDS------------MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAI 289 (478)
T ss_dssp ---TSCH------------HHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECS
T ss_pred ---ccCH------------HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEee
Confidence 0110 011223445667899999875 444432 2 35565544 221 578999999999
Q ss_pred CCCCCCC
Q 042564 174 GSRAQRA 180 (498)
Q Consensus 174 G~~p~~p 180 (498)
|.+|+..
T Consensus 290 G~~p~~~ 296 (478)
T 3dk9_A 290 GRVPNTK 296 (478)
T ss_dssp CEEESCT
T ss_pred ccccCCC
Confidence 9888765
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00032 Score=71.71 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=66.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ ..+ +|
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~----------~~~---------l~------------------------- 221 (488)
T 3dgz_A 186 GKTLVVGASYVALECAGFLTGIGLDTTVMMR----------SIP---------LR------------------------- 221 (488)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEES----------SCS---------ST-------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEc----------Ccc---------cc-------------------------
Confidence 4799999999999999999999999999993 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE---eCCEEEEEeCC---CceEEEEcCeEEEcCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV---GPNEVEVTQLD---GTKLSYSAKHILIATGSR 176 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i---~~~~~~v~~~~---g~~~~~~~d~liiAtG~~ 176 (498)
.++. .+...+...+++.||+++.++ +..+ +.+.+.+...+ |+..++.+|.|++|+|..
T Consensus 222 ---~~d~------------~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~ 286 (488)
T 3dgz_A 222 ---GFDQ------------QMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRV 286 (488)
T ss_dssp ---TSCH------------HHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEE
T ss_pred ---cCCH------------HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCC
Confidence 0110 112223455677899999885 4444 23444454422 444468999999999988
Q ss_pred CCCC
Q 042564 177 AQRA 180 (498)
Q Consensus 177 p~~p 180 (498)
|+..
T Consensus 287 p~~~ 290 (488)
T 3dgz_A 287 PETR 290 (488)
T ss_dssp ESCG
T ss_pred cccC
Confidence 8764
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00066 Score=70.24 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 246 AVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 246 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
+.+.+.+++.|++++.+ .|.++..++++ ..|.+.+|+++.+|.||.|+|..+..
T Consensus 169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence 34556666789999999 89999875543 57788888889999999999997765
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00016 Score=73.83 Aligned_cols=99 Identities=19% Similarity=0.325 Sum_probs=68.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
..+++|||+|+.|+..|..+++.|.+|+++++ .+ .+ +|
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~------~~---~~---------l~------------------------ 228 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHR------GD---LI---------LR------------------------ 228 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SS---SS---------ST------------------------
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEC------CC---cc---------cc------------------------
Confidence 35899999999999999999999999999993 11 10 00
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
.++. .+...+.+.+++.|++++.++ +..++ .+.+.|.+.+|+ ++.+|.||+|+|.+|..
T Consensus 229 ----~~~~------------~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~--~i~aD~Vi~A~G~~p~~ 290 (484)
T 3o0h_A 229 ----NFDY------------DLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQ--TICADRVMLATGRVPNT 290 (484)
T ss_dssp ----TSCH------------HHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSC--EEEESEEEECCCEEECC
T ss_pred ----ccCH------------HHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCc--EEEcCEEEEeeCCCcCC
Confidence 0110 111223444566799999865 44443 345677777775 79999999999988876
Q ss_pred CC
Q 042564 180 AP 181 (498)
Q Consensus 180 p~ 181 (498)
..
T Consensus 291 ~~ 292 (484)
T 3o0h_A 291 TG 292 (484)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00048 Score=66.22 Aligned_cols=158 Identities=19% Similarity=0.212 Sum_probs=98.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCC--------------------------------------CCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPLR--------------------------------------GFD 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l~--------------------------------------~~~ 241 (498)
-+|+|||+|+.|+.+|..|++. |.+|.++++.+.+-. ...
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~ 159 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHA 159 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecH
Confidence 4799999999999999999997 999999998753210 012
Q ss_pred HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCC-------------------e-EEEEE------C--------CCeEEE
Q 042564 242 DEMRAVVARNLEG-RGINLHPRTTIKELIKSEE-------------------G-VKVIT------D--------HGEEIV 286 (498)
Q Consensus 242 ~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~-------------------~-~~v~~------~--------~g~~i~ 286 (498)
.++.+.+.+.+.+ .|++++.++.+.++..+++ . ..|.. . +..++.
T Consensus 160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~ 239 (344)
T 3jsk_A 160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTIN 239 (344)
T ss_dssp HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEE
Confidence 3444666677777 5999999999999876542 2 22322 1 234799
Q ss_pred cCEEEEecCCCcCCCCC---CcccCCceeCCCCC--eEcCC-------CCCCCCCCeEEecccCC----C--CCChHHH-
Q 042564 287 ADVVLFATGRAPNTKRL---NLKAVGVEVDQTGA--VKVDE-------NSRTNVPSIWAVGDVTN----R--MNLTPVA- 347 (498)
Q Consensus 287 ~D~vi~a~G~~p~~~~l---~l~~~gi~~~~~g~--i~vd~-------~~~t~~~~iya~GD~~~----~--~~~~~~A- 347 (498)
++.||.|+|......-. .+...++.-.-.|. .+.+. +-+--+|++|++|=.+. . ......+
T Consensus 240 Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~~g~~rmgp~fg~m 319 (344)
T 3jsk_A 240 APVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEIDGANRMGPTFGAM 319 (344)
T ss_dssp CSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHHHTCEECCSCCHHH
T ss_pred cCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhhcCCCCCCccccee
Confidence 99999999987663211 01222222000111 11111 11113699999996653 1 1122233
Q ss_pred HHHHHHHHHHHh
Q 042564 348 LMEGTCFAKTVF 359 (498)
Q Consensus 348 ~~~g~~aa~~i~ 359 (498)
+.+|+.+|+.++
T Consensus 320 ~~sg~~~a~~~~ 331 (344)
T 3jsk_A 320 ALSGVKAAHEAI 331 (344)
T ss_dssp HHHHHHHHHHHH
T ss_pred eecCHHHHHHHH
Confidence 467888888775
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.57 E-value=6.5e-05 Score=79.82 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=35.2
Q ss_pred CCEEEcCccEEEEEEeCCeEEEEECC------CeEEEcCEEEEecC
Q 042564 256 GINLHPRTTIKELIKSEEGVKVITDH------GEEIVADVVLFATG 295 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~~~~v~~~~------g~~i~~D~vi~a~G 295 (498)
+++++++++|++|..+++++.|++.+ ++++.||.||+++.
T Consensus 410 ~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP 455 (662)
T 2z3y_A 410 GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLP 455 (662)
T ss_dssp TCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCC
T ss_pred cCceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCC
Confidence 67999999999999988888888755 56899999999987
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.54 E-value=5.4e-05 Score=74.81 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=29.3
Q ss_pred ccEEEECCChhHHHHHHHHHhC--CCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANF--GAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek 54 (498)
.||+|||||++|+++|+.|++. |.+|+|+|+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~ 33 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEK 33 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 3899999999999999999998 999999995
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.001 Score=63.58 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=97.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCCC--------------------------------------CC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPLRG--------------------------------------FD 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l~~--------------------------------------~~ 241 (498)
-+|+|||+|+.|+.+|..|.+. |.+|+++++.+.+... ..
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~ 145 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA 145 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence 3799999999999999999998 9999999986543100 12
Q ss_pred HHHHHHHHHHHHhC-CCEEEcCccEEEEEEeC----C--e-EEEEEC--------------CCeEEEc------------
Q 042564 242 DEMRAVVARNLEGR-GINLHPRTTIKELIKSE----E--G-VKVITD--------------HGEEIVA------------ 287 (498)
Q Consensus 242 ~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~----~--~-~~v~~~--------------~g~~i~~------------ 287 (498)
.++...+.+.+.+. |++++.++.|.++..++ + . ..+.+. ++.++.+
T Consensus 146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~ 225 (326)
T 2gjc_A 146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS 225 (326)
T ss_dssp HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence 34455566666664 99999999999997763 2 2 233321 3357899
Q ss_pred ---CEEEEecCCCcCCCCCCcccCCceeCCCC------Ce--------EcCCCCC-CCCCCeEEecccCC----C--CCC
Q 042564 288 ---DVVLFATGRAPNTKRLNLKAVGVEVDQTG------AV--------KVDENSR-TNVPSIWAVGDVTN----R--MNL 343 (498)
Q Consensus 288 ---D~vi~a~G~~p~~~~l~l~~~gi~~~~~g------~i--------~vd~~~~-t~~~~iya~GD~~~----~--~~~ 343 (498)
+.||.|+|......-+ +...-..++..+ .. .|+..-. +-+|++|++|-... . ...
T Consensus 226 ~~~~~VV~ATG~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~g~ 304 (326)
T 2gjc_A 226 QKHGVILSTTGHDGPFGAF-CAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGP 304 (326)
T ss_dssp TTCCEEEECCCCC--CCSH-HHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHTCCBCCS
T ss_pred ccCCEEEECcCCCchHHHH-HHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcCCCCCCh
Confidence 9999999987655432 111000011111 11 1111112 26799999997762 2 222
Q ss_pred hHHH-HHHHHHHHHHHh
Q 042564 344 TPVA-LMEGTCFAKTVF 359 (498)
Q Consensus 344 ~~~A-~~~g~~aa~~i~ 359 (498)
+-.+ +.+|+.+|+.|+
T Consensus 305 ~fg~m~~sg~~~a~~~~ 321 (326)
T 2gjc_A 305 TFGAMALSGVHAAEQIL 321 (326)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHH
Confidence 2233 467888888775
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=4.6e-05 Score=74.34 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
...+...+.+.+++.|++++. ++|.++...+ .+.+|.||+|+|....
T Consensus 141 p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~-----------~~~a~~VV~A~G~~s~ 187 (351)
T 3g3e_A 141 GKNYLQWLTERLTERGVKFFQ-RKVESFEEVA-----------REGADVIVNCTGVWAG 187 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH-----------HTTCSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh-----------cCCCCEEEECCCcChH
Confidence 456778888889999999988 7887763221 2579999999997654
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00095 Score=68.68 Aligned_cols=98 Identities=18% Similarity=0.134 Sum_probs=69.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-------CC-------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-------PL------------------------------------- 237 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-------~l------------------------------------- 237 (498)
-+|+|||+|+.|+.+|..+++.|.+|+++++.+. .+
T Consensus 33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~~~ 112 (519)
T 3qfa_A 33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE 112 (519)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCCS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 4899999999999999999999999999997431 00
Q ss_pred -CCCCH------------HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe--EEEcCEEEEecCCCcCCCC
Q 042564 238 -RGFDD------------EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE--EIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 238 -~~~~~------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~ 302 (498)
..++. .+...+...++..+|+++.+. +..+ +.+.+.+...+|+ ++.+|.+|+|||.+|....
T Consensus 113 ~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~--d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~p~ 189 (519)
T 3qfa_A 113 TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFI--GPHRIKATNNKGKEKIYSAERFLIATGERPRYLG 189 (519)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEE--ETTEEEEECTTCCCCEEEEEEEEECCCEEECCCC
T ss_pred cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEe--eCCEEEEEcCCCCEEEEECCEEEEECCCCcCCCC
Confidence 01111 111122345667899998773 3333 4456677776665 7999999999999887654
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00027 Score=71.74 Aligned_cols=98 Identities=15% Similarity=0.237 Sum_probs=68.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
..+++|||||+.|+..|..+++.|.+|+++++ .+ .+ .|
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~------~~---~~---------l~------------------------ 207 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYR------GK---EI---------LS------------------------ 207 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SS---SS---------ST------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEc------CC---cc---------cc------------------------
Confidence 35899999999999999999999999999993 11 10 00
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--C-EEEEE-eCCCceEEEEcCeEEEcCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--N-EVEVT-QLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~-~~~v~-~~~g~~~~~~~d~liiAtG~~p 177 (498)
.++. .+...+.+.+++.|++++.++ +..+.. + .+.|. +.+|+ +.+|.||+|+|.+|
T Consensus 208 ----~~~~------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~---i~aD~Vv~a~G~~p 268 (463)
T 4dna_A 208 ----RFDQ------------DMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE---IVADQVMLALGRMP 268 (463)
T ss_dssp ----TSCH------------HHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE---EEESEEEECSCEEE
T ss_pred ----ccCH------------HHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe---EEeCEEEEeeCccc
Confidence 0110 112233455677899999875 544432 2 35677 76662 89999999999888
Q ss_pred CCCC
Q 042564 178 QRAP 181 (498)
Q Consensus 178 ~~p~ 181 (498)
+...
T Consensus 269 ~~~~ 272 (463)
T 4dna_A 269 NTNG 272 (463)
T ss_dssp SCTT
T ss_pred CCCC
Confidence 7653
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00011 Score=79.54 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=31.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...+||+|||||++|+++|+.|++.|++|+|+|+
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~ 309 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEA 309 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEe
Confidence 3457999999999999999999999999999995
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00069 Score=69.09 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=66.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..+++.|.+|+++++ ..+ +|
T Consensus 188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~----------~~~---------l~------------------------- 223 (483)
T 3dgh_A 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVR----------SIV---------LR------------------------- 223 (483)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEES----------SCS---------ST-------------------------
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCEEEEEeC----------CCC---------Cc-------------------------
Confidence 4799999999999999999999999999992 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe---CCEEEEEeCC---CceEEEEcCeEEEcCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG---PNEVEVTQLD---GTKLSYSAKHILIATGSR 176 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~---~~~~~v~~~~---g~~~~~~~d~liiAtG~~ 176 (498)
.++. .+...+.+.+++.||+++.++ +..+. .+.+.|...+ ++..++.+|.|++|+|.+
T Consensus 224 ---~~d~------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~ 288 (483)
T 3dgh_A 224 ---GFDQ------------QMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRK 288 (483)
T ss_dssp ---TSCH------------HHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEE
T ss_pred ---ccCH------------HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccc
Confidence 0110 112223455677899999886 44443 2334554433 334578999999999988
Q ss_pred CCCC
Q 042564 177 AQRA 180 (498)
Q Consensus 177 p~~p 180 (498)
|+..
T Consensus 289 p~~~ 292 (483)
T 3dgh_A 289 GLVD 292 (483)
T ss_dssp ECCG
T ss_pred cCcC
Confidence 8754
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=5.3e-05 Score=84.49 Aligned_cols=93 Identities=14% Similarity=0.232 Sum_probs=71.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCCCC-------CC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELPL-------RG--FDDEMRAVVARNLEGRGINLHPRTTIKELIK 270 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 270 (498)
.++|+|||+|+.|+.+|..|++.|. +|+++++.+.+. +. ++.++.....+.+++.||++++++.+..
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 263 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE--- 263 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence 4689999999999999999999998 799999976431 22 4566677777888999999999977631
Q ss_pred eCCeEEEEECCCeEEEcCEEEEecCC-CcCC
Q 042564 271 SEEGVKVITDHGEEIVADVVLFATGR-APNT 300 (498)
Q Consensus 271 ~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~ 300 (498)
+ .+++.+++.+.+|.||+|||. .|..
T Consensus 264 --~--~v~~~~~~~~~~d~vvlAtGa~~p~~ 290 (1025)
T 1gte_A 264 --N--EITLNTLKEEGYKAAFIGIGLPEPKT 290 (1025)
T ss_dssp --T--SBCHHHHHHTTCCEEEECCCCCEECC
T ss_pred --c--eEEhhhcCccCCCEEEEecCCCCCCC
Confidence 1 133344445779999999998 4764
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=2.3e-05 Score=79.32 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=67.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHH-C------CCcEEEEeeCCCCC--------CC--CCHHHHHHHHHHHHhCCCEEEcCc
Q 042564 201 PKRAVVLGGGYIAVEFASIWRG-M------GSTVDLLFRKELPL--------RG--FDDEMRAVVARNLEGRGINLHPRT 263 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~-~------g~~V~lv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~ 263 (498)
+++|+|||+|+.|+.+|..|.+ . +.+|+++++.+.+. +. ...++...+.+.+++.|++++.+.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v 82 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 82 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence 4689999999999999999999 7 89999999986543 21 233566777788888899999885
Q ss_pred cEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 264 TIKELIKSEEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 264 ~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
.+ +. .|.++++ .+.+|.||+|||..
T Consensus 83 ~v------~~--~v~~~~~-~~~~d~lViAtG~~ 107 (456)
T 1lqt_A 83 VV------GE--HVQPGEL-SERYDAVIYAVGAQ 107 (456)
T ss_dssp CB------TT--TBCHHHH-HHHSSEEEECCCCC
T ss_pred EE------CC--EEEECCC-eEeCCEEEEeeCCC
Confidence 53 11 1334444 47899999999997
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00042 Score=71.93 Aligned_cols=95 Identities=15% Similarity=0.263 Sum_probs=71.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-------------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR------------------------------------------- 238 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~------------------------------------------- 238 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 106 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV 106 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence 3799999999999999999999999999997653210
Q ss_pred -C--------------------------CC-HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECC---C--eEE
Q 042564 239 -G--------------------------FD-DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH---G--EEI 285 (498)
Q Consensus 239 -~--------------------------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~---g--~~i 285 (498)
. ++ ..+.+.+.+.+++. ++++++|+++..+++++.+++.+ | +++
T Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i 183 (549)
T 2r0c_A 107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAV 183 (549)
T ss_dssp TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEE
T ss_pred CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEE
Confidence 0 00 12444555555554 88999999998887777777654 6 479
Q ss_pred EcCEEEEecCCCcC
Q 042564 286 VADVVLFATGRAPN 299 (498)
Q Consensus 286 ~~D~vi~a~G~~p~ 299 (498)
.+|.||.|.|..+.
T Consensus 184 ~a~~vVgADG~~S~ 197 (549)
T 2r0c_A 184 HARYLVACDGASSP 197 (549)
T ss_dssp EEEEEEECCCTTCH
T ss_pred EeCEEEECCCCCcH
Confidence 99999999997653
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=7.4e-05 Score=79.31 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHh-----CCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN-----FGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~-----~g~~V~lvek 54 (498)
++||+||||||+|+++|+.|++ .|.+|+|||+
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~ 44 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK 44 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeC
Confidence 4899999999999999999999 9999999995
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00017 Score=76.86 Aligned_cols=87 Identities=24% Similarity=0.282 Sum_probs=66.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC---------CCCC--CHHHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP---------LRGF--DDEMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~---------l~~~--~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
.++|+|||+|+.|+.+|..+++.|.+|+++++.+.+ ++.. ..++...+.+.+++.||++++++.+..
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-- 450 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA-- 450 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence 368999999999999999999999999999987653 1211 123445566777888999999876532
Q ss_pred EeCCeEEEEECCCeEE-EcCEEEEecCCCcCCCC
Q 042564 270 KSEEGVKVITDHGEEI-VADVVLFATGRAPNTKR 302 (498)
Q Consensus 270 ~~~~~~~v~~~~g~~i-~~D~vi~a~G~~p~~~~ 302 (498)
..+ .+|.+|+|||.+|....
T Consensus 451 -------------~~~~~~d~lviAtG~~p~~~~ 471 (671)
T 1ps9_A 451 -------------DQLQAFDETILASGIVPRTPP 471 (671)
T ss_dssp -------------SSSCCSSEEEECCCEEECCCC
T ss_pred -------------HHhhcCCEEEEccCCCcCCCC
Confidence 113 79999999999887654
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00078 Score=70.68 Aligned_cols=30 Identities=30% Similarity=0.363 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+++|||||+.|+-+|..|++.|.+|++++
T Consensus 287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~ 316 (598)
T 2x8g_A 287 GKTLVIGASYVALECAGFLASLGGDVTVMV 316 (598)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence 479999999999999999999999999999
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0004 Score=76.86 Aligned_cols=101 Identities=19% Similarity=0.105 Sum_probs=71.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC----C---C-C----CHHHHHHHHHHHHhC-CCEEEcCccEEEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL----R---G-F----DDEMRAVVARNLEGR-GINLHPRTTIKEL 268 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l----~---~-~----~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i 268 (498)
.+|+|||+|+.|+.+|..+.+.|.+|+++++.+.+- . . + ..++...+.+.+.+. +++++.++.|..+
T Consensus 129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i 208 (965)
T 2gag_A 129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFGS 208 (965)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEee
Confidence 579999999999999999999999999999876431 0 0 1 234445555666664 9999999999887
Q ss_pred EEeCCeEEEE---------E------CCCeEEEcCEEEEecCCCcCCCC
Q 042564 269 IKSEEGVKVI---------T------DHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 269 ~~~~~~~~v~---------~------~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
...+....+. . .++..+.+|.+|+|||..|....
T Consensus 209 ~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ 257 (965)
T 2gag_A 209 YDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIV 257 (965)
T ss_dssp ETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCC
T ss_pred ecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCC
Confidence 5332111111 1 11236899999999999876543
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=75.85 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHh-CCCcEEEEccC
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN-FGAKVGICELP 55 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek~ 55 (498)
+||+||||||+||+.+|.+|++ .+.+|+|+|+.
T Consensus 17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG 50 (526)
T 3t37_A 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAG 50 (526)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSS
T ss_pred CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 6999999999999999999998 78999999954
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.001 Score=70.26 Aligned_cols=97 Identities=15% Similarity=0.211 Sum_probs=74.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCcEEEEeeCCCCCC------------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRG-MGSTVDLLFRKELPLR------------------------------------------ 238 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~-~g~~V~lv~~~~~~l~------------------------------------------ 238 (498)
-+|+|||+|+.|+-+|..|++ .|.+|+++++.+.+..
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 112 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG 112 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence 379999999999999999999 8999999997643200
Q ss_pred ----------------C--------CC-HHHHHHHHHHHHhCCC--EEEcCccEEEEEEeCC----eEEEEEC------C
Q 042564 239 ----------------G--------FD-DEMRAVVARNLEGRGI--NLHPRTTIKELIKSEE----GVKVITD------H 281 (498)
Q Consensus 239 ----------------~--------~~-~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~----~~~v~~~------~ 281 (498)
. .+ ..+.+.+.+.+++.|+ +++++++|+++..+++ .+.+++. +
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~ 192 (639)
T 2dkh_A 113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA 192 (639)
T ss_dssp STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence 0 01 2455667778888877 9999999999987653 4666654 4
Q ss_pred C--eEEEcCEEEEecCCCc
Q 042564 282 G--EEIVADVVLFATGRAP 298 (498)
Q Consensus 282 g--~~i~~D~vi~a~G~~p 298 (498)
| +++.+|.||.|.|.++
T Consensus 193 G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 193 GQIETVQARYVVGCDGARS 211 (639)
T ss_dssp TCEEEEEEEEEEECCCTTC
T ss_pred CCeEEEEeCEEEECCCcch
Confidence 5 4789999999999654
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.001 Score=67.62 Aligned_cols=97 Identities=19% Similarity=0.254 Sum_probs=70.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------------CCC------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------------LRG------------------------------ 239 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------------l~~------------------------------ 239 (498)
.|+|||+|..|+-.|..+++.|.+|+++++...- +..
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~ 80 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE 80 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 4899999999999999999999999999986100 000
Q ss_pred --------------C----------------------CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEEC-C
Q 042564 240 --------------F----------------------DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVITD-H 281 (498)
Q Consensus 240 --------------~----------------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~-~ 281 (498)
+ ...+.+.+.+.+++.|++++.++.+ ++..+++.+ .+... +
T Consensus 81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~ 159 (472)
T 2e5v_A 81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKR 159 (472)
T ss_dssp HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTT
T ss_pred HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeC
Confidence 0 0134455666667789999999999 997766653 34432 2
Q ss_pred CeEEEcCEEEEecCCCcCC
Q 042564 282 GEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 282 g~~i~~D~vi~a~G~~p~~ 300 (498)
+..+.+|.||+|+|..+..
T Consensus 160 ~g~~~a~~VVlAtGg~~~~ 178 (472)
T 2e5v_A 160 GLVEDVDKLVLATGGYSYL 178 (472)
T ss_dssp EEECCCSEEEECCCCCGGG
T ss_pred CCeEEeeeEEECCCCCccc
Confidence 3357799999999987754
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0013 Score=67.63 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEe-CCe-EEEEEC-CCe--EEEcC-EEEEecCCCc
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKS-EEG-VKVITD-HGE--EIVAD-VVLFATGRAP 298 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~-~~v~~~-~g~--~i~~D-~vi~a~G~~p 298 (498)
.+.+.+.+.+++.|+++++++.|+++..+ ++. ..|... +++ ++.+| .||+|+|-..
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 45556667777889999999999999887 333 334433 343 58896 9999999765
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00098 Score=71.13 Aligned_cols=99 Identities=17% Similarity=0.088 Sum_probs=69.2
Q ss_pred ccEEEEC--CChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 24 FDLFVIG--AGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 24 ~dvvIIG--gG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|+||| +|..|+.+|..|++.|.+|+++++ .+ .+....
T Consensus 524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~------~~---~l~~~~------------------------------ 564 (690)
T 3k30_A 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTP------GA---QVSSWT------------------------------ 564 (690)
T ss_dssp SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEES------SS---STTGGG------------------------------
T ss_pred CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEec------cc---cccccc------------------------------
Confidence 4699999 999999999999999999999993 11 100000
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeC-CCceEEEEcCeEEEcCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQL-DGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~-~g~~~~~~~d~liiAtG~~p~~ 179 (498)
... .....+...+++.||+++.++ +..++.+...+... +++..++.+|.||+|+|.+|..
T Consensus 565 ---~~~---------------~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~ 626 (690)
T 3k30_A 565 ---NNT---------------FEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPRE 626 (690)
T ss_dssp ---GGG---------------TCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEECC
T ss_pred ---ccc---------------hhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCCh
Confidence 000 001223345667899999986 66788877776642 3345589999999999988764
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0016 Score=66.89 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=42.9
Q ss_pred HHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 247 VVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 247 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+++.|++++.+ +|+++..++++ ..|.+.+|+++.+|.||.|+|.....
T Consensus 178 ~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 178 YLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL 232 (511)
T ss_dssp HHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 3455566679999999 99999875554 67888888889999999999997655
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00026 Score=73.84 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeC--Ce-EEEEECCCeEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSE--EG-VKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~-~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
..+.+.+.+.++..|.++++++.|.+|..++ +. ..|...+|+++.||.||......|.
T Consensus 378 g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~ 438 (650)
T 1vg0_A 378 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 438 (650)
T ss_dssp THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred hHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence 5688899999999999999999999998776 44 4455678999999999997776654
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00019 Score=74.54 Aligned_cols=33 Identities=36% Similarity=0.546 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+||+||||||++|+.+|.+|++.|.+|+|+|+
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~ 38 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLER 38 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeC
Confidence 469999999999999999999999999999995
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00012 Score=75.77 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=30.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+||+||||||+||+.+|.+|++ |.+|+|+|+
T Consensus 24 ~~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEa 56 (536)
T 1ju2_A 24 EGSYDYVIVGGGTSGCPLAATLSE-KYKVLVLER 56 (536)
T ss_dssp EEEEEEEEECCSTTHHHHHHHHTT-TSCEEEECS
T ss_pred cCcccEEEECccHHHHHHHHHHhc-CCcEEEEec
Confidence 346999999999999999999999 999999993
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00023 Score=74.00 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=30.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCC-CcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFG-AKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek 54 (498)
.+||+||||||.||+.+|.+|++.+ .+|+|||+
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEa 38 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEA 38 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEec
Confidence 4699999999999999999999977 79999994
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0036 Score=64.50 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=41.5
Q ss_pred HHHHHHHh-CCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 247 VVARNLEG-RGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 247 ~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+++ .|++++.+ .|+++..++++ +.|.+.+|+++.+|.||.|+|..+..
T Consensus 180 ~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 180 LLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL 235 (526)
T ss_dssp HHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred HHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 34455566 79999999 69999876544 46777887789999999999998765
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00028 Score=69.65 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=67.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCC-----------------------CC------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPL-----------------------RG------------------ 239 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l-----------------------~~------------------ 239 (498)
+|+|||+|+.|+.+|..|++. |.+|+++++.+.+- ..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN 81 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence 699999999999999999998 99999999875430 00
Q ss_pred --------------CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 240 --------------FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 240 --------------~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
...++.+.+.+.+++.|++++++++|+++... +++.+|.||.|.|..+.
T Consensus 82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLANGVNHK 144 (381)
T ss_dssp SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECCGGGGG
T ss_pred eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECCCCCch
Confidence 01356677788888889999999998877421 12579999999998776
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00039 Score=72.24 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=31.5
Q ss_pred CCccEEEECCChhHHHHHHHHHh-CCCcEEEEccCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN-FGAKVGICELPF 56 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek~~ 56 (498)
..||+||||||.||+.+|.+|++ .+.+|+|+|+..
T Consensus 18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 46999999999999999999997 689999999543
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0038 Score=65.32 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=69.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCC--------------CCC------------------CC-------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELP--------------LRG------------------FD------- 241 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~--------------l~~------------------~~------- 241 (498)
.|+|||+|..|+-+|..+++.| .+|.++++.+.. +.. .+
T Consensus 7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~~ 86 (602)
T 1kf6_A 7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYF 86 (602)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 6999999999999999999999 999999986321 000 00
Q ss_pred -----------------------------------------------HHHHHHHHHHHHhCC-CEEEcCccEEEEEEeCC
Q 042564 242 -----------------------------------------------DEMRAVVARNLEGRG-INLHPRTTIKELIKSEE 273 (498)
Q Consensus 242 -----------------------------------------------~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~ 273 (498)
..+...+.+.+.+.| |+++.++.+.++..+++
T Consensus 87 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g 166 (602)
T 1kf6_A 87 VHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDG 166 (602)
T ss_dssp HHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCC
Confidence 133444555666678 99999999999987766
Q ss_pred eE-EE--E-ECCCe--EEEcCEEEEecCC
Q 042564 274 GV-KV--I-TDHGE--EIVADVVLFATGR 296 (498)
Q Consensus 274 ~~-~v--~-~~~g~--~i~~D~vi~a~G~ 296 (498)
.+ .+ . +.+|+ .+.++.||+|+|.
T Consensus 167 ~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 195 (602)
T 1kf6_A 167 HVRGLVAMNMMEGTLVQIRANAVVMATGG 195 (602)
T ss_dssp EEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred EEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 42 23 2 25776 6899999999995
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00059 Score=70.02 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=32.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccC
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 55 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~ 55 (498)
..+||++|||+|++|+.+|.+|++.|.+|+|+|+.
T Consensus 9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~ 43 (507)
T 1coy_A 9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG 43 (507)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECC
Confidence 45699999999999999999999999999999953
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0027 Score=68.12 Aligned_cols=31 Identities=16% Similarity=0.043 Sum_probs=29.1
Q ss_pred CccEEEEC--CChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIG--AGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIG--gG~aGl~aA~~l~~~g~~V~lve 53 (498)
..+|+||| ||..|+-+|..|++.|.+|++++
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~ 560 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVS 560 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEe
Confidence 35899999 99999999999999999999999
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00044 Score=71.65 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHh-CCCcEEEEccCC
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN-FGAKVGICELPF 56 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek~~ 56 (498)
.||+||||||.||+.+|.+|++ .+.+|+|+|+..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~ 36 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGV 36 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSB
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCC
Confidence 5999999999999999999999 899999999543
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.004 Score=62.84 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=31.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC------CcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMG------STVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g------~~V~lv~~~~~~ 236 (498)
++|+|||+|.+|+-+|..|.+.| .+|+++++.+++
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~ 46 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV 46 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence 58999999999999999999999 899999987643
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00047 Score=72.84 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=29.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCC--------CcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFG--------AKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g--------~~V~lvek 54 (498)
.++|+|||||++|++||+.|++.| .+|+|+|+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~ 95 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEA 95 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEec
Confidence 478999999999999999999988 99999995
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00078 Score=69.07 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 55 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~ 55 (498)
.+||++|||+|++|+.+|.+|++.|.+|+|+|+.
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~ 37 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG 37 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 3589999999999999999999999999999953
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.013 Score=60.85 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=37.9
Q ss_pred HHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEEC---CCe--EEEcCEEEEecCCCc
Q 042564 248 VARNLEGRGINLHPRTTIKELIKSEEG-VKVITD---HGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~---~g~--~i~~D~vi~a~G~~p 298 (498)
+.+.+++.|++++.+++|+++..+++. ..|.+. +|+ ++.+|.||+|+|...
T Consensus 194 l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws 250 (571)
T 2rgh_A 194 NIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV 250 (571)
T ss_dssp HHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred HHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence 344556789999999999999887765 335442 333 699999999999653
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0093 Score=63.17 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=29.9
Q ss_pred eEEEEcCCHHHHHHHHHHHH-----CCCcEEEEeeCC
Q 042564 203 RAVVLGGGYIAVEFASIWRG-----MGSTVDLLFRKE 234 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~-----~g~~V~lv~~~~ 234 (498)
+|+|||+|+.|+-+|..|++ .|.+|+++++.+
T Consensus 10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~ 46 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 46 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence 69999999999999999999 999999999764
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0018 Score=67.62 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=32.1
Q ss_pred CCccEEEECCChhHHHHHHHHHh-CCCcEEEEccCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN-FGAKVGICELPF 56 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek~~ 56 (498)
.+||+||||+|++|+.+|.+|++ .|.+|+|+|+..
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~ 58 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF 58 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 46999999999999999999999 899999999643
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.019 Score=59.78 Aligned_cols=32 Identities=31% Similarity=0.273 Sum_probs=29.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.|+|||+|..|+-.|..+++.|.+|.++++.+
T Consensus 9 DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~ 40 (588)
T 2wdq_A 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (588)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 69999999999999999999999999998764
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0014 Score=67.80 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhC-CCcEEEEccC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF-GAKVGICELP 55 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lvek~ 55 (498)
..||++|||+|++|+.+|.+|++. |.+|+|+|+.
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g 46 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAG 46 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecC
Confidence 469999999999999999999996 8999999953
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=96.39 E-value=0.033 Score=58.23 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=36.1
Q ss_pred HHHHHhCCCEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecCCCc
Q 042564 249 ARNLEGRGINLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 249 ~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G~~p 298 (498)
.+.+.+.||+++.++.+.++..+++. ..+.. .+|+ .+.++.||+|+|-..
T Consensus 162 ~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 162 YGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp HHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 33445568999999999999876554 23333 4665 688999999999654
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0085 Score=61.82 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=29.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
-.|+|||+|..|+-+|..+++ |.+|.++++.+.
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~ 41 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV 41 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence 379999999999999999999 999999998763
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.027 Score=57.40 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=69.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC--------------CcEEEEeeCCCC-------CCC--------------------C-
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG--------------STVDLLFRKELP-------LRG--------------------F- 240 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g--------------~~V~lv~~~~~~-------l~~--------------------~- 240 (498)
.|+|||+|+.|+-+|..|.+.+ ....++++.+.+ ++. +
T Consensus 41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s 120 (501)
T 4b63_A 41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT 120 (501)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence 6999999999999999887642 245566665421 110 0
Q ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC--------eEEEEECCC-----eE
Q 042564 241 -----------------------DDEMRAVVARNLEGRGINLHPRTTIKELIKSEE--------GVKVITDHG-----EE 284 (498)
Q Consensus 241 -----------------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--------~~~v~~~~g-----~~ 284 (498)
-.++.+.++...++.+..++++++|+++...+. ...|++.++ ++
T Consensus 121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~ 200 (501)
T 4b63_A 121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA 200 (501)
T ss_dssp HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence 124555566666666777999999999976442 256666433 36
Q ss_pred EEcCEEEEecCCCcCCCC
Q 042564 285 IVADVVLFATGRAPNTKR 302 (498)
Q Consensus 285 i~~D~vi~a~G~~p~~~~ 302 (498)
+.++.||+|+|..|....
T Consensus 201 ~~ar~vVlatG~~P~iP~ 218 (501)
T 4b63_A 201 RRTRKVVIAIGGTAKMPS 218 (501)
T ss_dssp EEEEEEEECCCCEECCCT
T ss_pred EEeCEEEECcCCCCCCCC
Confidence 889999999999888764
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.039 Score=58.18 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=36.0
Q ss_pred HHHHHhCCCEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecCCCc
Q 042564 249 ARNLEGRGINLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 249 ~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G~~p 298 (498)
.+.+.+.||+++.++.|.++..+++. ..+.. .+|+ .+.++.||+|+|-..
T Consensus 165 ~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 220 (660)
T 2bs2_A 165 ANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (660)
T ss_dssp HHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred HHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence 34445568999999999999876554 23332 4665 488999999999644
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=95.92 E-value=0.016 Score=60.74 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=30.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
..|+|||+|..|+.+|..|++.|.+|+++++.+
T Consensus 47 ~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~ 79 (623)
T 3pl8_A 47 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGE 79 (623)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCcEEEEeccC
Confidence 379999999999999999999999999998765
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0073 Score=55.54 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=31.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.|+|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 5999999999999999999999999999987654
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.086 Score=55.52 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=29.6
Q ss_pred CeEEEEcCCHHHHHHHHHHH---H-CCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWR---G-MGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~---~-~g~~V~lv~~~~ 234 (498)
-.|+|||+|..|+-.|..++ + .|.+|.++++.+
T Consensus 23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~ 59 (643)
T 1jnr_A 23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 59 (643)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence 37999999999999999999 5 799999998865
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.098 Score=49.97 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=27.7
Q ss_pred ccEEEECCChhHHH-HHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVR-AARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~-aA~~l~~~g~~V~lve 53 (498)
.++.|||.|.+|++ +|..|.+.|++|++.|
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D 35 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCD 35 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEEECHHHHHHHHHHHHhCCCEEEEEc
Confidence 47999999999996 7888899999999999
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.028 Score=47.30 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=29.6
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+++|||+|.-|...|..|.+.|.+|+++|+
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~ 50 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDK 50 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 35799999999999999999999999999993
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.019 Score=58.51 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=30.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
|+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~ 36 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP 36 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence 68999999999999999999999999999998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.041 Score=45.38 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=29.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+-+++|||.|.-|...|..|.+.|++|+++|
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid 37 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIE 37 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEE
Confidence 3479999999999999999999999999999
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.065 Score=54.41 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=36.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
.+||+|||||++|++||..|++.|++|+|+|+ ...+||.|.
T Consensus 39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~---------~~~~GGr~~ 79 (495)
T 2vvm_A 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEA---------RDRIGGRSW 79 (495)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECS---------SSBSBTTCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeC---------CCCCCCcce
Confidence 38999999999999999999999999999995 556777763
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.077 Score=55.90 Aligned_cols=33 Identities=15% Similarity=0.066 Sum_probs=29.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC------CCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM------GSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~------g~~V~lv~~~~ 234 (498)
-.|+|||+|..|+-.|..+++. |.+|.++++..
T Consensus 23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~ 61 (662)
T 3gyx_A 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS 61 (662)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSC
T ss_pred cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecC
Confidence 3799999999999999999987 99999998753
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.055 Score=51.73 Aligned_cols=78 Identities=22% Similarity=0.188 Sum_probs=57.3
Q ss_pred CCeEEEEcCCHHHHH-HHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE
Q 042564 201 PKRAVVLGGGYIAVE-FASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT 279 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e-~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~ 279 (498)
.+++.|||.|-+|+. +|..|.++|.+|++.+..+. ++ ..+.|++.|++++.+.....+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~-----~~-----~~~~L~~~gi~v~~g~~~~~l----------- 62 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY-----PP-----MSTQLEALGIDVYEGFDAAQL----------- 62 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC-----TT-----HHHHHHHTTCEEEESCCGGGG-----------
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC-----cH-----HHHHHHhCCCEEECCCCHHHc-----------
Confidence 578999999999997 89999999999999988653 11 234567789998765322111
Q ss_pred CCCeEEEcCEEEEecCCCcCCCC
Q 042564 280 DHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 280 ~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.. ..+|.||.+.|..|..+.
T Consensus 63 ~~---~~~d~vV~Spgi~~~~p~ 82 (326)
T 3eag_A 63 DE---FKADVYVIGNVAKRGMDV 82 (326)
T ss_dssp GS---CCCSEEEECTTCCTTCHH
T ss_pred CC---CCCCEEEECCCcCCCCHH
Confidence 00 147999999999887654
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.041 Score=53.70 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=31.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~ 39 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEI 39 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSST
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5999999999999999999999999999997654
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.098 Score=52.60 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=40.3
Q ss_pred CccccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccc
Q 042564 15 NQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVI 73 (498)
Q Consensus 15 ~~~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~ 73 (498)
+....|+..|||+|||+|++|+++|..|++.|++|+++|+ ...+||.|..
T Consensus 12 ~~~~~~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~---------~~~~Gg~~~s 61 (475)
T 3p1w_A 12 ENLYFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDR---------NPYYGGETAS 61 (475)
T ss_dssp -----CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCGGGCE
T ss_pred cccccccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEec---------cCCCCCCccc
Confidence 3445677789999999999999999999999999999995 5568888754
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.1 Score=46.70 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT 279 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~ 279 (498)
..++|+|||+|.+|..-+..|.+.|.+|+++.+. ..+++ .+..++.+++++...-
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~------~~~~l----~~l~~~~~i~~i~~~~--------------- 84 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT------VSAEI----NEWEAKGQLRVKRKKV--------------- 84 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS------CCHHH----HHHHHTTSCEEECSCC---------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC------CCHHH----HHHHHcCCcEEEECCC---------------
Confidence 3589999999999999999999999999999753 34443 3333444566553311
Q ss_pred CCCeEEEcCEEEEecCCCcC
Q 042564 280 DHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 280 ~~g~~i~~D~vi~a~G~~p~ 299 (498)
..+..-.+|+||.|||....
T Consensus 85 ~~~dL~~adLVIaAT~d~~~ 104 (223)
T 3dfz_A 85 GEEDLLNVFFIVVATNDQAV 104 (223)
T ss_dssp CGGGSSSCSEEEECCCCTHH
T ss_pred CHhHhCCCCEEEECCCCHHH
Confidence 11111248999999987543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.061 Score=44.20 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+++|+|+|.-|...|..|.+.|++|+++|
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id 36 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVD 36 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 479999999999999999999999999999
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.073 Score=44.50 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+++|+|+|..|...|..|.+.|.+|+++|
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid 33 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVIS 33 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence 579999999999999999999999999999
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.062 Score=43.85 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=28.5
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+++|||+|..|...|..|.+.|.+|+++|
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d 34 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLID 34 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 369999999999999999999999999999
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.093 Score=43.98 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
..++++|+|+|.+|..++..|.+.|.+|+++.+.+
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 45799999999999999999999999999998864
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.073 Score=41.89 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=28.5
Q ss_pred ccEEEECCChhHHHHHHHHHhCC-CcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFG-AKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g-~~V~lve 53 (498)
..++|+|+|..|...+..|.+.| .+|++++
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~ 36 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTSSNYSVTVAD 36 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSEEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence 57999999999999999999999 8999999
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.048 Score=54.79 Aligned_cols=80 Identities=20% Similarity=0.129 Sum_probs=58.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD 280 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~ 280 (498)
.++|.|+|.|.+|+-+|..|.+.|.+|++.+..+.. .++ ..+.|++.|++++.+.....+ +
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~---~~~-----~~~~L~~~gi~~~~g~~~~~~----------~- 69 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFD---ENP-----TAQSLLEEGIKVVCGSHPLEL----------L- 69 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGG---GCH-----HHHHHHHTTCEEEESCCCGGG----------G-
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCccc---CCh-----HHHHHHhCCCEEEECCChHHh----------h-
Confidence 589999999999999999999999999999876421 112 234677789998876432110 0
Q ss_pred CCeEEEcCEEEEecCCCcCCCC
Q 042564 281 HGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 281 ~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
++ .+|.||+++|..|+.+.
T Consensus 70 ~~---~~d~vv~spgi~~~~p~ 88 (451)
T 3lk7_A 70 DE---DFCYMIKNPGIPYNNPM 88 (451)
T ss_dssp GS---CEEEEEECTTSCTTSHH
T ss_pred cC---CCCEEEECCcCCCCChh
Confidence 00 16899999999877654
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=93.35 E-value=0.097 Score=52.21 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=38.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
|+.++||+|||||++|+++|..|++.|++|+|+|+ ...+||.|.
T Consensus 3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~---------~~~~gg~~~ 46 (433)
T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDR---------NPYYGGESS 46 (433)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCTTSC
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEec---------CCCcccccc
Confidence 45578999999999999999999999999999995 456777764
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.069 Score=53.24 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 34689999999999999999999999999999875
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.086 Score=52.23 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=31.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
++|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI 35 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 36999999999999999999999999999997653
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.093 Score=51.72 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=32.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
+-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~ 58 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI 58 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 358999999999999999999999999999998754
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.06 Score=53.30 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=31.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999975
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.077 Score=53.92 Aligned_cols=38 Identities=32% Similarity=0.472 Sum_probs=34.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL 237 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l 237 (498)
.+++|+|||+|.+|+.+|..|.+.|.+|+++++.+++.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~g 69 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG 69 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence 35799999999999999999999999999999887643
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.11 Score=50.09 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=31.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 379999999999999999999999999999975
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.1 Score=51.58 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=31.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT 35 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 6999999999999999999999999999997653
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.1 Score=54.17 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=32.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~ 57 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAF 57 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCC
Confidence 36899999999999999999999999999998753
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.12 Score=50.73 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=31.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 6 DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (397)
T 2oln_A 6 DVVVVGGGPVGLATAWQVAERGHRVLVLERHTF 38 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 799999999999999999999999999998764
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.12 Score=51.31 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=31.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
..+|+|||+|+.|+.+|..+++.|.+|+++++.+.
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~ 61 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA 61 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 35899999999999999999999999999998775
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.11 Score=50.42 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=31.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.+|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 489999999999999999999999999999875
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.12 Score=51.33 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=30.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
+|+|||+|..|+-.|..|++.|.+|+++++.++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~ 35 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGER 35 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 699999999999999999999999999998654
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.1 Score=53.01 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=30.8
Q ss_pred eEEEEcCCHHHHHHHHHHHH-CCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRG-MGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~-~g~~V~lv~~~~~~ 236 (498)
.|+|||+|.+|+-+|..|++ .|.+|+++++.+++
T Consensus 12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~ 46 (513)
T 4gde_A 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP 46 (513)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSC
T ss_pred CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence 79999999999999999987 59999999988754
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.098 Score=50.70 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=30.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
+|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus 4 dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~ 36 (372)
T 2uzz_A 4 DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMP 36 (372)
T ss_dssp EEEESCTTHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 699999999999999999999999999998754
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.13 Score=50.11 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=30.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 5 dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~ 37 (389)
T 2gf3_A 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (389)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 799999999999999999999999999998753
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.14 Score=44.09 Aligned_cols=31 Identities=19% Similarity=0.095 Sum_probs=29.0
Q ss_pred CccEEEECCChhHHHHHHHHHhC-CCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF-GAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lve 53 (498)
..+++|||+|..|...|..|.+. |.+|+++|
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid 70 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIE 70 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEE
Confidence 34799999999999999999998 99999999
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.15 Score=49.30 Aligned_cols=33 Identities=42% Similarity=0.531 Sum_probs=30.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 489999999999999999999999999999753
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.15 Score=50.44 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=32.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~ 236 (498)
..+|+|||+|..|+-+|..|++.| .+|+++++.+++
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~ 42 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 468999999999999999999999 899999987754
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.16 Score=49.47 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=32.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC-CC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK-EL 235 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~-~~ 235 (498)
+.+|+|||+|..|+-+|..|.+.|.+|+++++. ++
T Consensus 44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~ 79 (376)
T 2e1m_A 44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANR 79 (376)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSC
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccc
Confidence 568999999999999999999999999999987 43
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.14 Score=45.76 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=29.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
...|+|||||..|...|..|.+.|.+|+|++
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVva 61 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVA 61 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCCCEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 4689999999999999999999999999999
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.13 Score=41.94 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=28.5
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+++|+|+|..|...|..|.+.|.+|+++|
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d 36 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVD 36 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 369999999999999999999999999999
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=0.16 Score=49.37 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=30.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
++|+|||+|..|++.|..+++.|.+|.++++.+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 479999999999999999999999999999765
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.14 Score=49.83 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=30.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.+|+|||+|.+|+.+|..|++.|.+|+++++..
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999874
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=91.77 E-value=0.3 Score=48.93 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=40.0
Q ss_pred cccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 17 EEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 17 ~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
|+.|+.++||||||||++|++||..|++.|++|+|+|+ ...+||.|.
T Consensus 5 ~~~~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~---------~~~~GG~~~ 51 (453)
T 2bcg_G 5 QETIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDK---------QDHYGGEAA 51 (453)
T ss_dssp --CCCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCGGGC
T ss_pred hhhccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeC---------CCCCCcccc
Confidence 44566679999999999999999999999999999996 567888874
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=91.69 E-value=0.38 Score=48.76 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=28.5
Q ss_pred CccEEEECCChhHHH-HHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVR-AARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~-aA~~l~~~g~~V~lve 53 (498)
..+|.|||.|-+|++ +|..|.+.|++|++.|
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D 53 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSD 53 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEE
Confidence 358999999999997 6999999999999999
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.15 Score=49.91 Aligned_cols=30 Identities=33% Similarity=0.589 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|+|||+|++|+.+|..|...|.+|+++|
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D 220 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATD 220 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEc
Confidence 579999999999999999999999999999
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.50 E-value=0.25 Score=49.69 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=35.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC--cEEEEccCCCCCCCCcCCCcccccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA--KVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~--~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
+||+|||||++||+||++|++.|. +|+|+|+ ...+||.|.
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa---------~~~~GG~~~ 44 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVES---------SERLGGWIR 44 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECS---------SSSSBTTCC
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeC---------CCCCCCceE
Confidence 699999999999999999999999 9999995 456777763
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=91.46 E-value=0.17 Score=51.57 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=32.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~ 236 (498)
.+|+|||+|..|+-+|..|.+.| .+|+++++.+++
T Consensus 9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri 44 (516)
T 1rsg_A 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44 (516)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 48999999999999999999999 999999988754
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=0.19 Score=50.77 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=32.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
..+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 46 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP 46 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 468999999999999999999999999999987653
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=91.35 E-value=0.12 Score=47.66 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=29.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...|+|||||..|...|..|.+.|.+|+||++
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap 44 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcC
Confidence 35799999999999999999999999999993
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.2 Score=46.72 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||+|.-|...|..+++.|++|+++|
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d 34 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYD 34 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEe
Confidence 479999999999999999999999999999
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=91.23 E-value=0.17 Score=49.14 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=31.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.++|+|||+|.+|+-+|..|+ .|.+|+++++.+.+
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~ 43 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP 43 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence 468999999999999999999 59999999997543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=91.20 E-value=0.26 Score=40.38 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
..++++|+|.|..|..++..|.+.|.+|+++++.
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 3468999999999999999999999999999874
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.23 Score=48.56 Aligned_cols=35 Identities=14% Similarity=0.355 Sum_probs=31.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.+++|||+|.+|+.+|..|.+.|.+|+++++.+++
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 38 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 37999999999999999999999999999987654
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=0.23 Score=49.43 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=31.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKEL 235 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~ 235 (498)
.+|+|||+|..|+-+|..|++.|. +|+++++.+.
T Consensus 7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~ 41 (438)
T 3dje_A 7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV 41 (438)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 479999999999999999999999 9999998764
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.21 Score=50.32 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=32.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
..+|+|||+|..|+-+|..|.+.|.+|+++++.+.+
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~ 51 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 51 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 468999999999999999999999999999998754
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.18 Score=49.41 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=30.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CC-CcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRG-MG-STVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~-~g-~~V~lv~~~~ 234 (498)
.+|+|||+|..|+.+|..|++ .| .+|+++++.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 379999999999999999999 89 9999999876
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=90.72 E-value=0.23 Score=50.33 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCHHHHH-HHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEE
Q 042564 200 LPKRAVVLGGGYIAVE-FASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVI 278 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e-~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~ 278 (498)
..+++.|||-|-+|+- +|..|.+.|.+|+..+.... + ..+.|++.|++++.+.....+
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~------~-----~~~~l~~~gi~~~~g~~~~~~---------- 79 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN------S-----VTQHLTALGAQIYFHHRPENV---------- 79 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC------H-----HHHHHHHTTCEEESSCCGGGG----------
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC------H-----HHHHHHHCCCEEECCCCHHHc----------
Confidence 4579999999999996 89999999999999876431 2 234577889999876322111
Q ss_pred ECCCeEEEcCEEEEecCCCcCCCC
Q 042564 279 TDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 279 ~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
..+|.||++.|..|..+.
T Consensus 80 ------~~~d~vV~Spgi~~~~p~ 97 (494)
T 4hv4_A 80 ------LDASVVVVSTAISADNPE 97 (494)
T ss_dssp ------TTCSEEEECTTSCTTCHH
T ss_pred ------CCCCEEEECCCCCCCCHH
Confidence 137999999998776553
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=0.14 Score=51.10 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|.|||.|.+|+++|..|++.|++|++.|.
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~ 36 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDT 36 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCCCEEEES
T ss_pred CEEEEEeecHHHHHHHHHHHhCCCEEEEEEC
Confidence 4799999999999999999999999999994
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=0.25 Score=49.38 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=32.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.+|+|||+|..|+-+|..|.+.|.+|+++++.+.+
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 40 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV 40 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 47999999999999999999999999999987654
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=90.59 E-value=0.16 Score=52.28 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=31.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHH---CCCcEEEEeeCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRG---MGSTVDLLFRKE 234 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~---~g~~V~lv~~~~ 234 (498)
..+|+|||||..|+-+|..|++ .|.+|+++++.+
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 4689999999999999999999 999999999865
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=90.49 E-value=0.28 Score=48.16 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=31.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.+++|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 30 ~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 64 (397)
T 3hdq_A 30 FDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI 64 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence 48999999999999999999999999999987653
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=90.48 E-value=0.2 Score=50.12 Aligned_cols=31 Identities=32% Similarity=0.510 Sum_probs=29.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..+|.|||.|.+|+++|..|++.|++|++.|
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D 39 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVND 39 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEe
Confidence 3579999999999999999999999999999
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=90.40 E-value=0.37 Score=49.26 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=56.4
Q ss_pred ccccCCCeEEEEcCCHHHHH-HHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe
Q 042564 196 SLEELPKRAVVLGGGYIAVE-FASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG 274 (498)
Q Consensus 196 ~l~~~~~~v~ViG~G~~g~e-~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~ 274 (498)
.+....+++.+||-|-+|+- +|..|.+.|.+|+..+.... ++ ..+.|++.|++++.+.....+
T Consensus 14 ~~~~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~-----~~-----~~~~L~~~gi~~~~G~~~~~~------ 77 (524)
T 3hn7_A 14 NLYFQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY-----PP-----MSTQLEQAGVTIEEGYLIAHL------ 77 (524)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----TT-----HHHHHHHTTCEEEESCCGGGG------
T ss_pred ceeecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC-----cH-----HHHHHHHCCCEEECCCCHHHc------
Confidence 34445689999999999997 68899999999999987542 11 234567789998766322111
Q ss_pred EEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 275 VKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 275 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
...+|.||...|..|..+.
T Consensus 78 ---------~~~~d~vV~Spgi~~~~p~ 96 (524)
T 3hn7_A 78 ---------QPAPDLVVVGNAMKRGMDV 96 (524)
T ss_dssp ---------CSCCSEEEECTTCCTTSHH
T ss_pred ---------CCCCCEEEECCCcCCCCHH
Confidence 0137999999998776654
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=90.38 E-value=0.15 Score=52.41 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=37.4
Q ss_pred eEcCCCCCC-CCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 318 VKVDENSRT-NVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 318 i~vd~~~~t-~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
|..|+.++| +++++|+|||.++...-...|..+|..+|+.|+
T Consensus 497 i~~~~~~~~~~~~gly~~GegaG~a~gi~~Aa~~G~~~a~~i~ 539 (549)
T 3nlc_A 497 IKRGKDFQSVNLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVA 539 (549)
T ss_dssp CCCTTTTSCTTCBTEEECHHHHTSCCSHHHHHHHHHHHHHHHH
T ss_pred EEECCCceECCcCCEEEccccCChhhHHHHHHHHHHHHHHHHH
Confidence 788899999 899999999999987777788889999998875
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=90.36 E-value=0.32 Score=48.90 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=34.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCC-cEEEEccCCCCCCCCcCCCccccc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGA-KVGICELPFHPISSEVIGGVGGTC 71 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lvek~~~~~~~~~~~~~GG~~ 71 (498)
..+||+|||||++|+++|..|++.|. +|+|+|+ ...+||.|
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~---------~~~~gg~~ 44 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEA---------TDHIGGRM 44 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECS---------SSSSBTTS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeC---------CCCCCCce
Confidence 45799999999999999999999998 8999995 34567766
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=90.31 E-value=0.26 Score=49.96 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=33.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
..+|+|||+|..|+-+|..|.+.|.+|+++++.+.+
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 48 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 48 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 468999999999999999999999999999998764
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=90.20 E-value=0.28 Score=52.11 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=31.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~ 298 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQ 298 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 35899999999999999999999999999998653
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.19 E-value=0.44 Score=39.59 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=30.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 368999999999999999999999999999874
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.13 E-value=0.23 Score=47.21 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=42.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHH--CCCcEEEEeeCCCCCCC-------CC-HHHHHHHHHHHHhCCCEEEcCcc
Q 042564 202 KRAVVLGGGYIAVEFASIWRG--MGSTVDLLFRKELPLRG-------FD-DEMRAVVARNLEGRGINLHPRTT 264 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~--~g~~V~lv~~~~~~l~~-------~~-~~~~~~l~~~l~~~Gv~i~~~~~ 264 (498)
..|+|||+|+.|+-+|..|++ .|.+|+++++.+.+-.. ++ ..+...+.+.+++.|+++..+..
T Consensus 66 ~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~~ 138 (326)
T 3fpz_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGD 138 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECCc
Confidence 579999999999999999964 59999999987643110 11 01112234456677887776543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=90.00 E-value=0.2 Score=48.54 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|+|||+|..|+.+|..|...|.+|+++|
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D 214 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYD 214 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEe
Confidence 579999999999999999999999999999
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=0.21 Score=47.94 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=29.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC------CcEEEEeeCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG------STVDLLFRKE 234 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g------~~V~lv~~~~ 234 (498)
+|+|||+|.+|+-+|..|++.| .+|+++++..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 6999999999999999999988 8999999874
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=89.90 E-value=0.33 Score=39.65 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=29.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 58999999999999999999999999999874
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=0.29 Score=51.84 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=31.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~ 305 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLRRGWQVTLYCADE 305 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999864
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.25 Score=43.95 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+++|||+|.-|...|..|.+.|.+|+++|
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid 30 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIIN 30 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 59999999999999999999999999999
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.68 E-value=0.26 Score=48.47 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=31.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM-GSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~-g~~V~lv~~~~~~ 236 (498)
.+++|||+|..|+-+|..|++. |.+|+++++.+++
T Consensus 8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~ 43 (399)
T 1v0j_A 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI 43 (399)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 4799999999999999999998 9999999987643
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=89.53 E-value=0.34 Score=45.52 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=28.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||+|.-|...|..|++.|++|+++|
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d 45 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVD 45 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 469999999999999999999999999999
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=89.39 E-value=0.26 Score=47.67 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=29.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC-cEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA-KVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lvek 54 (498)
+-+|||+|||.||+.+|..|...|. +|+++|+
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~ 220 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDK 220 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEET
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEEC
Confidence 3579999999999999999999998 9999994
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=89.33 E-value=0.35 Score=49.28 Aligned_cols=43 Identities=30% Similarity=0.445 Sum_probs=37.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
+.++||+|||||++|++||..|++.|++|+|+|+ ...+||.|.
T Consensus 2 ~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~---------~~~~GGr~~ 44 (520)
T 1s3e_A 2 SNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEA---------RDRVGGRTY 44 (520)
T ss_dssp -CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECS---------SSSSBTTCC
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeC---------CCCCCCcee
Confidence 3457999999999999999999999999999995 456777763
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=89.31 E-value=0.29 Score=48.11 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..|+|||+|.+|+.+|..|+..|.+|+++|
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D 202 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFD 202 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence 579999999999999999999999999999
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=89.17 E-value=0.31 Score=47.27 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=30.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
+++|||+|..|+-+|..|.+.|.+|+++++.++
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~ 35 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 689999999999999999999999999998764
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.99 E-value=0.44 Score=45.02 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||.|.-|...|..|++.|++|+++|
T Consensus 22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~d 51 (310)
T 3doj_A 22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWN 51 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEe
Confidence 579999999999999999999999999999
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.95 E-value=0.33 Score=46.73 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=28.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||+|..|...|..|++.|.+|++++
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~ 34 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWD 34 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 479999999999999999999999999999
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=88.89 E-value=0.39 Score=45.64 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
.+|.|||+|..|...|..|+..|. +|+|+|
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~D 35 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFD 35 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 479999999999999999999998 999999
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=0.17 Score=50.61 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=53.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD 280 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~ 280 (498)
+++|+|||.|.+|+..|..|.+.|.+|+..+....... . ..++ .|+++..+....+. +
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~--~--------~~l~-~G~~~~~g~~~~~~----------~- 62 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG--L--------DKLP-EAVERHTGSLNDEW----------L- 62 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT--G--------GGSC-TTSCEEESSCCHHH----------H-
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch--h--------HHhh-CCCEEEECCCcHHH----------h-
Confidence 47899999999999999999999999999987653210 1 2345 68888765321000 0
Q ss_pred CCeEEEcCEEEEecCCCcCCC
Q 042564 281 HGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 281 ~g~~i~~D~vi~a~G~~p~~~ 301 (498)
. .+|.||+++|..|..+
T Consensus 63 ---~-~~d~vV~s~gi~~~~p 79 (439)
T 2x5o_A 63 ---M-AADLIVASPGIALAHP 79 (439)
T ss_dssp ---H-TCSEEEECTTSCTTCH
T ss_pred ---c-cCCEEEeCCCCCCCCH
Confidence 0 3789999999877554
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=88.74 E-value=0.4 Score=44.98 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|+...+|.|||.|.-|...|..|++.|++|+++|+
T Consensus 12 M~~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr 46 (296)
T 3qha_A 12 TTEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDI 46 (296)
T ss_dssp ---CCCEEEECCSTTHHHHHHHHTTSTTCEEEECS
T ss_pred ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 33345899999999999999999999999999993
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=88.67 E-value=0.37 Score=45.55 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||+|.-|..-|..++..|++|+|+|
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D 36 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYD 36 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEE
Confidence 369999999999999999999999999999
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=88.62 E-value=0.34 Score=45.93 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=28.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
..+|.|||+|.-|...|..|++.|. +|+++|
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D 35 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFD 35 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence 3579999999999999999999998 999999
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=88.54 E-value=0.37 Score=46.62 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.|+|||||.-|..+|+.+++.|++|+++|.
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~ 32 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDK 32 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4799999999999999999999999999994
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.48 E-value=0.42 Score=49.32 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=31.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.-.|+|||||..|+-+|..+++.|.+|.++++.+
T Consensus 18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d 51 (561)
T 3da1_A 18 QLDLLVIGGGITGAGIALDAQVRGIQTGLVEMND 51 (561)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3489999999999999999999999999999974
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=88.48 E-value=0.36 Score=47.19 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=29.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..+|+|||+|.+|+.+|..|+..|.+|+++|
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d 202 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAVVMATD 202 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3579999999999999999999999999999
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=88.46 E-value=0.58 Score=37.78 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=29.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
.+++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 47999999999999999999999999999873
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=88.39 E-value=0.3 Score=48.70 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=29.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CcEEEEee
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMG-STVDLLFR 232 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~ 232 (498)
.+|+|||+|..|+-+|..|++.| .+|+++++
T Consensus 24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 47999999999999999999999 99999998
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=88.17 E-value=0.47 Score=36.99 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=29.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMG-STVDLLFRK 233 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~ 233 (498)
++++|+|+|.+|..++..|.+.| .+|+++.|.
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 58999999999999999999999 789888874
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=0.42 Score=45.62 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=28.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
.+|.|||+|.-|.+.|..|++.|+ +|+|+|
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D 40 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYD 40 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 479999999999999999999888 999999
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=87.80 E-value=0.42 Score=46.26 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..|+|+|+|.+|..++..|+..|.+|+++|
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~d 197 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFD 197 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 579999999999999999999999999999
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=87.76 E-value=0.58 Score=47.26 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=32.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~ 236 (498)
..+++|||+|..|+-+|..|.+.| .+|+++++.+.+
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~ 45 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 358999999999999999999998 799999988653
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=87.71 E-value=0.52 Score=49.69 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=33.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+
T Consensus 107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~ 142 (662)
T 2z3y_A 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 142 (662)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 469999999999999999999999999999987754
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=87.69 E-value=0.39 Score=46.37 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=29.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC-cEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA-KVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lvek 54 (498)
+.+|+|+|+|.+|..+|..|...|. +|+++|+
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr 224 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDR 224 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEET
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEEC
Confidence 4589999999999999999999998 8999994
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=87.55 E-value=0.64 Score=45.22 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=29.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...|.|||+|.-|...+..+++.|++|.++|.
T Consensus 12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~ 43 (377)
T 3orq_A 12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDP 43 (377)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 45799999999999999999999999999993
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=87.54 E-value=0.55 Score=50.84 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=32.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~ 312 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR 312 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCc
Confidence 36899999999999999999999999999997754
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=87.53 E-value=0.46 Score=45.06 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||+|.-|.+.|..|++.|.+|++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~ 32 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVS 32 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEe
Confidence 479999999999999999999999999999
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=87.32 E-value=0.62 Score=37.79 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=29.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999999999999999999999999998764
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=87.31 E-value=0.5 Score=44.72 Aligned_cols=30 Identities=33% Similarity=0.359 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC--cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~--~V~lve 53 (498)
.+|+|||+|..|...|..|++.|. +|+++|
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d 39 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLED 39 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 379999999999999999999998 999999
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=87.17 E-value=0.5 Score=44.62 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=28.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||+|.-|.+.|..|++.|.+|++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~ 32 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLL 32 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEE
Confidence 479999999999999999999999999999
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=87.09 E-value=0.56 Score=44.47 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC--cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~--~V~lve 53 (498)
.+|+|||+|..|.+.|..|+..+. +++++|
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~D 39 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALRQTANELVLID 39 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 589999999999999999999887 999999
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=87.05 E-value=0.42 Score=43.54 Aligned_cols=31 Identities=19% Similarity=0.475 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lvek 54 (498)
.+|+|||+|..|..+|..|++.|. +++|+|.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~ 63 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDF 63 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 579999999999999999999997 8999993
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=86.84 E-value=0.62 Score=44.48 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||+|.-|.+.|..|++.|.+|++++
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~ 33 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLA 33 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEE
Confidence 379999999999999999999999999999
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=86.74 E-value=0.33 Score=45.88 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=30.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.++|.|||+|..|.-+|..++..|.+|++++..+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3689999999999999999999999999998754
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=86.70 E-value=0.78 Score=40.45 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
...++.|||.|.+|.-+|..|.+.|.+|+++.|.+
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~ 52 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD 52 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35689999999999999999999999999998764
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=86.50 E-value=0.77 Score=42.20 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=29.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...++|||+|-+|.++|..|++.|.+|+|+.+
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nR 149 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNR 149 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 45799999999999999999999999999993
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=86.50 E-value=0.69 Score=45.18 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=30.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
....|+|||+|..|...|..+++.|++|.++|.
T Consensus 13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~ 45 (389)
T 3q2o_A 13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDP 45 (389)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 345899999999999999999999999999993
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=86.31 E-value=0.59 Score=50.75 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=31.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKEL 235 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~ 235 (498)
.+|+|||+|.+|+-+|..|++.|. +|+++++.+.
T Consensus 5 ~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~ 39 (830)
T 1pj5_A 5 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL 39 (830)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence 479999999999999999999998 9999998764
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=86.30 E-value=2.2 Score=44.35 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=40.7
Q ss_pred cccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 17 EEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 17 ~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
++.|..+||++|||+|..|...|..|++.|++|++||+ +..+||.|.
T Consensus 2 ~~~~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~---------~~~~gg~~~ 48 (650)
T 1vg0_A 2 ADNLPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDS---------RSYYGGNWA 48 (650)
T ss_dssp -CCCCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCGGGC
T ss_pred CccCCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcC---------CCcccCccc
Confidence 34555679999999999999999999999999999996 677888763
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=86.29 E-value=0.77 Score=46.05 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=35.6
Q ss_pred CccEEEECCChhHHHHHHHHHhCC--CcEEEEccCCCCCCCCcCCCcccccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
++||+|||||++|+++|++|++.| .+|+|+|+ ...+||.|.
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~---------~~~~GG~~~ 46 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEA---------GERLGGKVA 46 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECS---------SSSSBTTCC
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEEC---------CCCCCceeE
Confidence 479999999999999999999999 99999995 456677653
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=86.24 E-value=0.65 Score=44.05 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=28.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
.+|.|||+|..|.+.|..|+..|. +|+|+|
T Consensus 8 ~kI~viGaG~vG~~~a~~l~~~~~~~v~L~D 38 (324)
T 3gvi_A 8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFD 38 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 479999999999999999999888 999999
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=86.22 E-value=0.6 Score=43.88 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+|.|||+|.-|...|..|++.|++|++++
T Consensus 5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~ 33 (316)
T 2ew2_A 5 KIAIAGAGAMGSRLGIMLHQGGNDVTLID 33 (316)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCcEEEEE
Confidence 69999999999999999999999999999
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.13 E-value=0.67 Score=44.66 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||+|.-|.+.|..|++.|.+|++++
T Consensus 30 mkI~VIGaG~mG~alA~~La~~G~~V~l~~ 59 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARKGQKVRLWS 59 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEe
Confidence 479999999999999999999999999999
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=86.00 E-value=0.78 Score=43.31 Aligned_cols=30 Identities=30% Similarity=0.284 Sum_probs=28.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
.+|.|||+|.-|.+.|..|+..|. +|+++|
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D 39 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQKELADVVLVD 39 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 579999999999999999999999 999999
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=85.90 E-value=0.62 Score=46.88 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||.|.-|+..|..|++.|++|+++|
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d 38 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADIGHDVFCLD 38 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred ceEEEECcCHHHHHHHHHHHhCCCEEEEEE
Confidence 479999999999999999999999999999
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=85.86 E-value=0.57 Score=46.06 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=31.3
Q ss_pred ccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 18 EQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 18 ~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..|+....|.|+|||..|...+..+++.|++|.++|
T Consensus 19 ~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d 54 (403)
T 3k5i_A 19 GHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD 54 (403)
T ss_dssp --CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 455555789999999999999999999999999999
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=85.79 E-value=0.62 Score=45.17 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..|+|+|+|..|..+|..|+..|.+|+++|
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d 196 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILD 196 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEE
Confidence 579999999999999999999999999999
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=85.71 E-value=0.93 Score=42.61 Aligned_cols=31 Identities=35% Similarity=0.533 Sum_probs=29.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..+|.|||.|.-|...|..|++.|++|+++|
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~d 39 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWN 39 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3579999999999999999999999999999
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=85.67 E-value=0.32 Score=39.98 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=28.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
...++|||+|..|...|..|++.|.+|++++
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~ 51 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAG 51 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3579999999999999999999999999999
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=85.66 E-value=0.73 Score=41.76 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=29.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+|.|||+|.-|.+.|..|++.|++|+++++
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r 50 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTR 50 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 45799999999999999999999999999993
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=85.57 E-value=2.5 Score=43.05 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=27.1
Q ss_pred ccEEEECCChhHHHH-HHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRA-ARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~a-A~~l~~~g~~V~lve 53 (498)
.+|.|||-|-+|+++ |..|.+.|++|.+.|
T Consensus 20 ~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD 50 (524)
T 3hn7_A 20 MHIHILGICGTFMGSLALLARALGHTVTGSD 50 (524)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEEecHhhHHHHHHHHHhCCCEEEEEC
Confidence 479999999999985 777888999999999
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=85.48 E-value=0.66 Score=45.14 Aligned_cols=30 Identities=43% Similarity=0.712 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..|+|||+|..|..+|..|+..|.+|+++|
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d 198 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLD 198 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 579999999999999999999999999999
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=85.26 E-value=0.63 Score=42.88 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
..++|+|||+|.+|...+..|.+.|.+|+++.+..
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 35899999999999999999999999999998743
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=85.15 E-value=0.74 Score=43.29 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=27.8
Q ss_pred cEEEECCChhHHHHHHHHHhCCC--cEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~--~V~lve 53 (498)
+|+|||+|..|.+.|..|+..|. +|+++|
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D 32 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVD 32 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 59999999999999999999998 999999
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=85.13 E-value=0.8 Score=43.56 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=28.5
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
.+|.|||+|.-|...|..|+..|+ +|+|+|
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~D 45 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFD 45 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 479999999999999999999998 999999
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=85.11 E-value=0.73 Score=46.00 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||.|.-|+..|..|++.|++|+++|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D 32 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCID 32 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEE
Confidence 379999999999999999999999999999
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=84.92 E-value=0.81 Score=45.07 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|+|||.|..|...|..|.+.|.+|++||
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId 34 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLD 34 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence 469999999999999999999999999999
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=84.76 E-value=0.92 Score=38.82 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=30.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC-CCcEEEEeeC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGM-GSTVDLLFRK 233 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~-g~~V~lv~~~ 233 (498)
.++++|+|.|.+|..++..|.+. |.+|+++++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~ 72 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIR 72 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 45899999999999999999998 9999999874
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=84.73 E-value=0.46 Score=47.63 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+++|+|+|--|...|..|.+.|++|++||+
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~ 34 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGENNDITIVDK 34 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCSTTEEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Confidence 3699999999999999999999999999993
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=84.71 E-value=0.96 Score=41.87 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+|.|||+|.-|...|..|++.|++|+++++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r 31 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLR 31 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEc
Confidence 589999999999999999999999999993
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=84.70 E-value=0.87 Score=40.13 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++.|||+|.-|.+.|..|++.|.+|+++++
T Consensus 20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~ 50 (209)
T 2raf_A 20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGS 50 (209)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 4799999999999999999999999999994
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=84.66 E-value=0.69 Score=46.30 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=29.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..|+|||||..|...+..|.+.|.+|+|+++
T Consensus 13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~ 43 (457)
T 1pjq_A 13 RDCLIVGGGDVAERKARLLLEAGARLTVNAL 43 (457)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhCcCEEEEEcC
Confidence 5799999999999999999999999999993
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=84.65 E-value=0.89 Score=41.90 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=28.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..++|+|+|.+|.++|..|++.|.+|++++
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~ 149 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITN 149 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEE
Confidence 579999999999999999999999999999
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=84.53 E-value=0.88 Score=44.13 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=29.1
Q ss_pred CccEEEECC-ChhHHHHHHHHHhCCC---cEEEEc
Q 042564 23 DFDLFVIGA-GSGGVRAARFSANFGA---KVGICE 53 (498)
Q Consensus 23 ~~dvvIIGg-G~aGl~aA~~l~~~g~---~V~lve 53 (498)
..+|+|||| |.+|+.|+..+...|. +|+++|
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D 248 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWD 248 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEee
Confidence 358999999 9999999999999997 999999
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=84.52 E-value=0.74 Score=43.57 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=29.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCC--cEEEEc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lve 53 (498)
|.++.+|+|||+|..|.+.|..|+..+. ++.|+|
T Consensus 2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~D 37 (318)
T 1ez4_A 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVD 37 (318)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEe
Confidence 3444689999999999999999998765 899999
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=84.41 E-value=0.86 Score=42.74 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||.|.-|...|..|++.|++|+++|
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~d 37 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRAGLSTWGAD 37 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 479999999999999999999999999999
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=84.41 E-value=0.89 Score=43.23 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=29.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC-cEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA-KVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lvek 54 (498)
..+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~ 66 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN 66 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 4689999999999999999999996 8999993
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=83.96 E-value=1.1 Score=44.67 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=30.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.++.|||.|.-|+..|..|++.|++|+++|.
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~ 39 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDK 39 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 46899999999999999999999999999993
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=83.94 E-value=0.79 Score=45.36 Aligned_cols=31 Identities=32% Similarity=0.181 Sum_probs=29.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+..+.|||.|.-|+..|..+++.|++|+.+|
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~D 51 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYD 51 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEE
Confidence 4589999999999999999999999999999
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 498 | ||||
| d3lada3 | 124 | d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenas | 3e-30 | |
| d1feca3 | 128 | d.87.1.1 (A:358-485) Trypanothione reductase {Crit | 3e-29 | |
| d1dxla3 | 123 | d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenas | 4e-29 | |
| d1gesa3 | 115 | d.87.1.1 (A:336-450) Glutathione reductase {Escher | 6e-29 | |
| d1v59a3 | 123 | d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenas | 1e-28 | |
| d1onfa3 | 119 | d.87.1.1 (A:377-495) Glutathione reductase {Plasmo | 2e-28 | |
| d1h6va3 | 133 | d.87.1.1 (A:367-499) Mammalian thioredoxin reducta | 2e-28 | |
| d3grsa3 | 115 | d.87.1.1 (A:364-478) Glutathione reductase {Human | 6e-28 | |
| d1mo9a3 | 140 | d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl c | 8e-27 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 5e-26 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 4e-08 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 6e-26 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 5e-25 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 4e-16 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 6e-25 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 3e-24 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 2e-17 | |
| d1aoga2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Trypa | 3e-24 | |
| d1ojta2 | 125 | c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase | 8e-24 | |
| d1ojta3 | 128 | d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenas | 9e-24 | |
| d1h6va2 | 122 | c.3.1.5 (A:171-292) Mammalian thioredoxin reductas | 1e-23 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 5e-23 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 3e-16 | |
| d1onfa2 | 117 | c.3.1.5 (A:154-270) Glutathione reductase {Plasmod | 6e-23 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 7e-23 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 2e-17 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 1e-22 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 4e-13 | |
| d1xdia2 | 118 | d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenas | 8e-22 | |
| d3lada2 | 119 | c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase | 1e-21 | |
| d3grsa2 | 125 | c.3.1.5 (A:166-290) Glutathione reductase {Human ( | 2e-21 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 4e-21 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 8e-19 | |
| d1ebda3 | 115 | d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenas | 3e-20 | |
| d1lvla2 | 115 | c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase | 4e-20 | |
| d1ebda2 | 117 | c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase | 1e-19 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 3e-19 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 4e-19 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 1e-17 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 9e-19 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 1e-12 | |
| d1v59a2 | 122 | c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase | 2e-18 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 4e-18 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 2e-15 | |
| d1lvla3 | 123 | d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenas | 2e-17 | |
| d1aoga1 | 238 | c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas | 7e-17 | |
| d1aoga1 | 238 | c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas | 1e-15 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 1e-16 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 8e-13 | |
| d1dxla2 | 123 | c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase | 1e-16 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 5e-16 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 5e-16 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 1e-15 | |
| d1djqa2 | 156 | c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, | 3e-15 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 3e-15 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 1e-14 | |
| d1nhpa3 | 126 | d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus | 4e-14 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 2e-13 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 6e-10 | |
| d1nhpa2 | 123 | c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus | 7e-13 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 1e-12 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 2e-10 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 1e-10 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 7e-10 | |
| d1mo9a2 | 121 | c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co | 8e-10 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 1e-08 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 1e-07 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 1e-07 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 3e-07 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 3e-07 | |
| d2v5za1 | 383 | c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H | 3e-06 | |
| d2ivda1 | 347 | c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox | 3e-06 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 8e-06 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 2e-05 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 1e-04 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 3e-04 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 3e-04 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 4e-04 | |
| d1ps9a2 | 162 | c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t | 9e-04 | |
| d2cula1 | 230 | c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T | 0.002 | |
| d1gpea1 | 391 | c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic | 0.003 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 0.003 |
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 112 bits (281), Expect = 3e-30
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVD 427
Y +P ++ P ++ VG +E+ +G V F ++ +K++ D
Sbjct: 1 YDLIPAVIYTHPEIAGVGKTEQALKAEGVAIN-VGVFPFAASGRAMAANDTAGFVKVIAD 59
Query: 428 AETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477
A+T++VLG + GP A E++Q A+A++ G + V HP+ +E
Sbjct: 60 AKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEAL 109
|
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 109 bits (274), Expect = 3e-29
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVM-KLVV 426
+ V CAVF IPP+ V G EE A ++ + V+ SSF P+ + ISG K M ++V
Sbjct: 1 HTKVACAVFSIPPMGVCGYVEEDAAKKYD-QVAVYESSFTPLMHNISGSTYKKFMVRIVT 59
Query: 427 DAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRR 486
+ +VLG M G +PEI+Q +A+ LK GA + F +T+G+HP+SAEE +MR+
Sbjct: 60 NHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAYF 119
Query: 487 V 487
Sbjct: 120 Y 120
|
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 108 bits (272), Expect = 4e-29
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVD 427
Y VP V+ P ++ VG +EEQ E G + V F + + ++K++ +
Sbjct: 1 YDKVPGVVYTNPEVASVGKTEEQVKETG-VEYRVGKFPFMANSRAKAIDNAEGLVKIIAE 59
Query: 428 AETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477
ET+K+LG + P A E++ A+AL+ A+ HP+ +E
Sbjct: 60 KETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAI 109
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 108 bits (270), Expect = 6e-29
Identities = 55/115 (47%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Query: 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDIL-VFTSSFNPMRNTISGRQEKTVMKLVV 426
Y ++P VF PP+ VGL+E QA EQ D + V+ SSF M ++ ++ MKLV
Sbjct: 1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVC 60
Query: 427 DAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481
EK++G G E++QG AVALK GATK FD+TV IHP++AEEFVTMR
Sbjct: 61 VGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR 115
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 107 bits (268), Expect = 1e-28
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVD 427
Y ++P ++ P ++ VG +EEQ E G D + F + + + +K+++D
Sbjct: 1 YNNIPSVMYSHPEVAWVGKTEEQLKEAGI-DYKIGKFPFAANSRAKTNQDTEGFVKILID 59
Query: 428 AETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477
++TE++LGA + GP A E++ +AL+ GA+ HP+ +E F
Sbjct: 60 SKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAF 109
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 106 bits (266), Expect = 2e-28
Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQG-----KGDILVFTSSFNPMRNTISGRQEKTVM 422
Y+ +P +F PP+ +GLSEE AI+ K FT+ F + + +EKT +
Sbjct: 1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYL 60
Query: 423 KLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481
KLV + E + G + G A EI+QG AVALK ATK FD T+ IHP++AEEF+T++
Sbjct: 61 KLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ 119
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 107 bits (268), Expect = 2e-28
Identities = 51/124 (41%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQG-KGDILVFTSSFNPMRNTISGRQEK--TVMKL 424
Y +VP VF GLSEE+A+E+ + +I V+ S F P+ T+ R +
Sbjct: 1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVI 60
Query: 425 VVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVT 484
+ E+V+G + GP A E+ QG A ALKCG TK Q DST+GIHP AE F T+ VT
Sbjct: 61 CNLKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTLS-VT 119
Query: 485 RRVA 488
+R
Sbjct: 120 KRSG 123
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (262), Expect = 6e-28
Identities = 54/115 (46%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
Query: 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQEKTVMKLVV 426
Y ++P VF PP+ VGL+E++AI + G ++ +++SF PM + ++ R+ K VMK+V
Sbjct: 1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVC 60
Query: 427 DAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481
+ EKV+G M G E++QG AVA+K GATKA FD+TV IHP+S+EE VT+R
Sbjct: 61 ANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTLR 115
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 103 bits (257), Expect = 8e-27
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
Query: 369 RDVPCAVFCIPPLSVVGLSEEQAIEQG-------------KGDILVFTSSFNPMRNTISG 415
++ P + +S +G+ EE+A G G + +S M
Sbjct: 2 KNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGK 61
Query: 416 RQEKT--VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGI--HP 471
K+V+DA+T KVLGA G A + Q + V +K G T + + +P
Sbjct: 62 GTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNP 121
Query: 472 SSAEEFVTMRSVTRRV 487
+ + +R+ ++ +
Sbjct: 122 THFIQLSRLRAGSKNL 137
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 104 bits (260), Expect = 5e-26
Identities = 68/292 (23%), Positives = 109/292 (37%), Gaps = 50/292 (17%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+DL VIG GSGG+ AAR +A AKV + E +GGTCV GCVPKKI+
Sbjct: 2 YDLIVIGGGSGGMAAARRAARHNAKVALVE----------KSRLGGTCVNVGCVPKKIMF 51
Query: 84 YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE 143
AS LE S + K F+ L++++ I RLN IY++ LS V LYEG
Sbjct: 52 NAASVHDILE--NSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGT 109
Query: 144 GKIVGPNE---------VEVTQLDGTKLSYSAKHILIATGSRAQRAP-----IPGQELAI 189
+ N + ++ILIA G++ + ++L +
Sbjct: 110 ASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNV 169
Query: 190 TSDEALSLEELPKRAVVLGGGYI--AVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAV 247
++ + + +R V + + L+ +E L ++ +
Sbjct: 170 ETNNNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDI 229
Query: 248 VARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299
+ V + G ++AD + R N
Sbjct: 230 FYN---------------------VQLTPVAINAG-RLLADRLFLKKTRKTN 259
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 52.0 bits (123), Expect = 4e-08
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 8/120 (6%)
Query: 277 VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVD----QTGAVKVDENSRTNVPSIW 332
+ E + +L A G P + + + + +E + VDEN RT+V +I+
Sbjct: 131 NGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIY 190
Query: 333 AVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAI 392
AVGD + + ++ + +V +F L+ V ++ + +
Sbjct: 191 AVGDCCMVKKSKEIEDLNLL----KLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLL 246
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 99.8 bits (248), Expect = 6e-26
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 182 IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFD 241
IPG E I SD +L LP+R V+G GYI VE + G+G+ L + PL FD
Sbjct: 2 IPGVEYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFD 61
Query: 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATG 295
+ + + G LH K ++K+ +G + + + G D +++A G
Sbjct: 62 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 100 bits (249), Expect = 5e-25
Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 33/233 (14%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+D IG GSGG+ + +A +G K + E +GGTCV GCVPKK++
Sbjct: 3 YDYIAIGGGSGGIASINRAAMYGQKCALIE----------AKELGGTCVNVGCVPKKVMW 52
Query: 84 YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE 143
+ A + F+W+ L+ +T I R++ Y+ +L V + +G
Sbjct: 53 HAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGF 112
Query: 144 GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQE--------------LAI 189
V+ L+ + +A HILIATG R P + I
Sbjct: 113 -----ARFVDAKTLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYI 167
Query: 190 TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTV-DLLFRKELPLRGFD 241
D+ + + +G AVE + G + + LF + P D
Sbjct: 168 VVDKYQNT--NIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNK-PDEHLD 217
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 75.0 bits (183), Expect = 4e-16
Identities = 43/210 (20%), Positives = 72/210 (34%), Gaps = 48/210 (22%)
Query: 205 VVLGGGYIAVEFASIWRGMGSTVDLLFRKEL----------------------------- 235
+ +GGG + + G L+ KEL
Sbjct: 6 IAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYG 65
Query: 236 PLRGFD-------------------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK 276
P GFD D + L +++ K+ E
Sbjct: 66 PDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNG 125
Query: 277 VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336
++A + R P +NL+A GV+ ++ G + VD+ TN+ I+AVGD
Sbjct: 126 ETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGD 185
Query: 337 VTNRMNLTPVALMEGTCFAKTVFGGQPCKP 366
T + LTPVA+ G ++ +F +P +
Sbjct: 186 NTGAVELTPVAVAAGRRLSERLFNNKPDEH 215
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 97.2 bits (241), Expect = 6e-25
Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 184 GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWR---GMGSTVDLLFRKELPLRGF 240
G +L ITS+EA L+E PKRA+ +GGGYI++EFA I+ G VDL +R ++ LRGF
Sbjct: 1 GDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGF 60
Query: 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-VITDHGEEIVADVVLFATGR 296
D E+R + L GIN+ ++ K+ +G + V+ + G E DVV+ A GR
Sbjct: 61 DSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 117
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 99.3 bits (246), Expect = 3e-24
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 8/97 (8%)
Query: 279 TDHGEEIVADVVLFATGRAPNTK--------RLNLKAVGVEVDQTGAVKVDENSRTNVPS 330
+ E + + +L ATG P L L+ GVEV + GA+KVD S+TNV +
Sbjct: 144 SAVLETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDN 203
Query: 331 IWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPD 367
I+A+GDVT+R+ LTPVA+ EG F TVF +P D
Sbjct: 204 IYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATD 240
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 79.6 bits (195), Expect = 2e-17
Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 18/242 (7%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+DL VIGAGSGG+ A +A+ K +GGTCV GCVPKK++
Sbjct: 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLM 62
Query: 83 VYGASFGGELEDARSYGWEVH-EKIDFDWKKLLQKKTDEILRLNGIYKR-LLSNAGVKLY 140
V GA++ + ++ +GWE+ E + +WK L+ K + +N Y+ G+ +
Sbjct: 63 VTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFH 122
Query: 141 EGEGKIVGPNEVEVTQL----DGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALS 196
+G G + + V V + + ++IL+ATGS Q I + + L
Sbjct: 123 QGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIE-----VPRSQTLQ 177
Query: 197 LEELPKRAVVLGGGYIAVEFASIWRGMGSTV---DLLFRKELPLRGFDDEMRAVVARNLE 253
LE+ V G I V+ S + + D+ R L +E A V
Sbjct: 178 LEKAG--VEVAKNGAIKVDAYS-KTNVDNIYAIGDVTDRVML-TPVAINEGAAFVDTVFA 233
Query: 254 GR 255
+
Sbjct: 234 NK 235
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 95.2 bits (236), Expect = 3e-24
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 182 IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIW---RGMGSTVDLLFRKELPLR 238
IPG E I+S+EA L E P+R + +GGG+I+VEFA I+ + V L +R E+ LR
Sbjct: 1 IPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR 60
Query: 239 GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT-DHGEEIVADVVLFA 293
GFD +R + + L GI + + ++ + +G K +T + G+++ D+V+ A
Sbjct: 61 GFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA 116
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 94.1 bits (233), Expect = 8e-24
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 182 IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFD 241
IP I S AL+L+E+P + +++GGG I +E +++ +GS +D++ + ++G D
Sbjct: 7 IPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGAD 66
Query: 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG----EEIVADVVLFATGR 296
++ V + E R N+ T + E+GV V + E D VL A GR
Sbjct: 67 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 125
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 94.3 bits (234), Expect = 9e-24
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 369 RDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDA 428
R +P + P ++ VG +E A + + I+ +K KL+ DA
Sbjct: 2 RVIPGVAYTSPEVAWVGETELSAKASARKITKANFP-WAASGRAIANGCDKPFTKLIFDA 60
Query: 429 ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477
ET +++G + GP +++ + +A++ G A T+ HP+ E
Sbjct: 61 ETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESI 109
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 93.6 bits (232), Expect = 1e-23
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 183 PG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFD 241
PG +E I+SD+ SL P + +V+G Y+A+E A G+G V ++ R LRGFD
Sbjct: 1 PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LLRGFD 59
Query: 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVI---------TDHGEEIVADVVLF 292
+M + ++E GI + ++ + E G ++ E + VL
Sbjct: 60 QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLL 119
Query: 293 ATG 295
A G
Sbjct: 120 AVG 122
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 94.9 bits (235), Expect = 5e-23
Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 54/217 (24%)
Query: 205 VVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-----------------------PLRGFD 241
+V+G G A +G V ++ + L + +
Sbjct: 7 LVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSE 66
Query: 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK------------------------- 276
+ ++ + + +K+L EG+
Sbjct: 67 EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNG 126
Query: 277 -----VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSI 331
+ + GR PNT L L+ +G+++ G ++VD+ RT+VP+I
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNI 186
Query: 332 WAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDY 368
+A+GD+ L A EG A+ + G P DY
Sbjct: 187 FAIGDIVPGPALAHKASYEGKVAAEAIA-GHPSAVDY 222
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 75.7 bits (185), Expect = 3e-16
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+ + V+GAG GG AA +A G KV I E G +GG C+ GC+P K
Sbjct: 2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK----------GNLGGVCLNVGCIPSKA 51
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
L+ + + + + E + D+ K+ + K + +L G + LL V++ +
Sbjct: 52 LISASHRYEQAKHSEEM-GIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVK 110
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180
GE V N V V D + +Y+ K+ +IATGSR
Sbjct: 111 GEAYFVDANTVRVVNGDSAQ-TYTFKNAIIATGSRPIEL 148
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 91.7 bits (227), Expect = 6e-23
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF 240
P+ G E I+SDE +++E K+ ++G GYIAVE ++ + +G + R LR F
Sbjct: 3 PVKGIENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKF 61
Query: 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEI-VADVVLFA 293
D+ + V+ +++ IN+ + E+ K + + + G D V++
Sbjct: 62 DESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC 116
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.9 bits (235), Expect = 7e-23
Identities = 47/226 (20%), Positives = 81/226 (35%), Gaps = 30/226 (13%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
D+ +IG G G AA +A G E G +GGTC+ GC+P K L
Sbjct: 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACV---------EKRGKLGGTCLNVGCIPSKAL 55
Query: 83 VYGASFGGELE-DARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ + ++ +A+ G +V+ I + + K D + +L G + L V Y+
Sbjct: 56 LNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYK 115
Query: 142 GEGKIVGPNEVEVTQLDGTK------LSYSAKHILI--------ATGSRAQRAPIPGQEL 187
G G ++ VT +DG + K+I++ G R A + +++
Sbjct: 116 GNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGRRPYIAGLGAEKI 175
Query: 188 AITSDE------ALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTV 227
+ D+ V+G A G
Sbjct: 176 GLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAA 221
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.5 bits (195), Expect = 2e-17
Identities = 23/76 (30%), Positives = 33/76 (43%)
Query: 288 DVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVA 347
V GR P L + +G+EVD+ G + +D+ + P I VGDVT L A
Sbjct: 155 SEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKA 214
Query: 348 LMEGTCFAKTVFGGQP 363
EG + + G
Sbjct: 215 EEEGIAAVEMLKTGHG 230
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.8 bits (232), Expect = 1e-22
Identities = 31/85 (36%), Positives = 42/85 (49%)
Query: 279 TDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338
H + R PNTK L+L +G++ D G + VDE TNV I+AVGDV
Sbjct: 132 APHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC 191
Query: 339 NRMNLTPVALMEGTCFAKTVFGGQP 363
+ LTPVA+ G A +F +
Sbjct: 192 GKALLTPVAIAAGRKLAHRLFEYKE 216
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.5 bits (161), Expect = 4e-13
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 21/193 (10%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+D VIG GSGG+ +AR +A GA+ + E +GGTCV GCVPKK++
Sbjct: 3 SYDYLVIGGGSGGLASARRAAELGARAAVVE----------SHKLGGTCVNVGCVPKKVM 52
Query: 83 VYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG 142
A + D YG+ E F+W+ + +K+ + RLN IY+ L+ + +++ G
Sbjct: 53 WNTAVHSEFMHDHADYGFPSCE-GKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG 111
Query: 143 EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPK 202
+ + + Y+A HILIATG P + + T D LSL +L
Sbjct: 112 HAAFTSDPKPTIEV---SGKKYTAPHILIATGGMPS---TPHERVPNTKD--LSLNKLGI 163
Query: 203 RAVVLGGGYIAVE 215
+ G+I V+
Sbjct: 164 Q--TDDKGHIIVD 174
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 88.6 bits (219), Expect = 8e-22
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Query: 369 RDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDA 428
R V VF P ++ VG+ + + +K+
Sbjct: 2 RTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLP-LRTNARAKMSEMRHGFVKIFCRR 60
Query: 429 ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEF 477
T V+G + P A E++ IAVA++ T + T+ ++PS +
Sbjct: 61 STGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSI 109
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 88.3 bits (218), Expect = 1e-21
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 181 PIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG 239
P P Q++ + S AL + +P + V+G G I +E S+W +G+ V +L + L
Sbjct: 1 PAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA 60
Query: 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT---DHGEEIVADVVLFATG 295
D+++ + L +G+ + + + V V + + D ++ A G
Sbjct: 61 VDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.2 bits (215), Expect = 2e-21
Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 182 IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFD 241
IPG L ITSD LEELP R+V++G GYIAVE A I +GS L+ R + LR FD
Sbjct: 3 IPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFD 62
Query: 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKV---------ITDHGEEIVADVVLF 292
+ LE G+ + + +KE+ K+ G++V + D +L+
Sbjct: 63 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLW 122
Query: 293 ATG 295
A G
Sbjct: 123 AIG 125
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 89.5 bits (221), Expect = 4e-21
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 21/234 (8%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+ D+ +IG G GG AA +A G K E G +GGTC+ GC+P K L
Sbjct: 3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIE---------KRGALGGTCLNVGCIPSKAL 53
Query: 83 VYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG 142
++ + E + + + ++ D ++ +K + L + L V +G
Sbjct: 54 LHSSHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKG 113
Query: 143 EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ-RAPIPGQELAITSDEALSLEELP 201
GK V P+E+ V ++G KHI+IATGS + R P L+L+++
Sbjct: 114 YGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTP---------FTSGLNLDKIG 164
Query: 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255
LG + F++ G+ + D++ L + +D + L G+
Sbjct: 165 VETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGV--ACVEYLAGK 216
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 83.0 bits (204), Expect = 8e-19
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 293 ATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGT 352
GR P T LNL +GVE D+ G + V+E TNV ++A+GDV L A +G
Sbjct: 148 VKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGV 207
Query: 353 CFAKTVFGGQP 363
+ + G
Sbjct: 208 ACVEYLAGKVG 218
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 84.0 bits (207), Expect = 3e-20
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 371 VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAET 430
+P VF P + VG E+QA ++G D++ F ++ +KLVV E
Sbjct: 2 IPAVVFSDPECASVGYFEQQAKDEGI-DVIAAKFPFAANGRALALNDTDGFLKLVVRKED 60
Query: 431 EKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
++GA + GP A +++ + +A++ G T T+ HP+ E
Sbjct: 61 GVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGE 105
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 83.3 bits (205), Expect = 4e-20
Identities = 37/114 (32%), Positives = 58/114 (50%)
Query: 182 IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFD 241
+P I+S EAL+ + LP+ VV+GGGYI +E +R +G+ V ++ +E L +D
Sbjct: 2 LPLGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYD 61
Query: 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295
E+ A VA +L+ GI LH +++ + AD VL A G
Sbjct: 62 SELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG 115
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 82.6 bits (203), Expect = 1e-19
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 182 IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFD 241
+ S AL+L E+PK VV+GGGYI +E + + G+ V +L L GF+
Sbjct: 3 FKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFE 62
Query: 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG---EEIVADVVL 291
+M A++ + L+ +G+ + K + E+GV V + + I AD VL
Sbjct: 63 KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVL 115
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 81.3 bits (200), Expect = 3e-19
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 176 RAQRAPIPGQELAITSDEALSLEELP------KRAVVLGGGYIAVEFASIWRGMGSTVDL 229
RA+ I G+E +T + + A+++GGG+I +E A G V L
Sbjct: 1 RAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKL 60
Query: 230 LFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADV 289
+ R G D+E+ ++ LE G+ + + E V+T+ I V
Sbjct: 61 IHRGA-MFLGLDEELSNMIKDMLEETGVKFFLNSELLEA----NEEGVLTN-SGFIEGKV 114
Query: 290 VLFATG 295
+ A G
Sbjct: 115 KICAIG 120
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 84.2 bits (207), Expect = 4e-19
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
++D+ V+G G GG AA +A+ G KV I E +GG C+ GC+P K
Sbjct: 5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIV---------ERYKTLGGVCLNVGCIPSKA 55
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
L++ A+ E+ + G + + + + D L K + RL G + + V + +
Sbjct: 56 LLHNAAVIDEVRHLAANGIK-YPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQ 114
Query: 142 GEGKIVGPNE 151
G+G+ + P+
Sbjct: 115 GDGQFLDPHH 124
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 79.6 bits (195), Expect = 1e-17
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 239 GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEI--VADVVLFATGR 296
G ++ ++G G L P L + + ++I + ++ A R
Sbjct: 100 GLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSR 159
Query: 297 APNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAK 356
APN K ++ + GV V G ++VD+ RTNVP I+A+GD+ + L A+ EG A+
Sbjct: 160 APNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAE 219
Query: 357 TVFGGQP 363
G +
Sbjct: 220 NCAGHKA 226
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 83.9 bits (206), Expect = 9e-19
Identities = 33/200 (16%), Positives = 69/200 (34%), Gaps = 17/200 (8%)
Query: 15 NQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR 74
N +E ++D IG G+ G + + G + I + +GG+C
Sbjct: 34 NVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDR---------WPFLGGSCPHN 84
Query: 75 GCVPKKILVYGASFGGELEDARSY-GWEVHEKIDFDWKKLLQKKTDEILRLNGI--YKRL 131
CVP + A+ + + K+++ +GI ++
Sbjct: 85 ACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSK 144
Query: 132 LSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITS 191
+ K++ + VE + AK++++A G+ +P Q +
Sbjct: 145 EQLNLEYILNCPAKVIDNHTVEAAGKV-----FKAKNLILAVGAGPGTLDVPEQPRSAEL 199
Query: 192 DEALSLEELPKRAVVLGGGY 211
+ L L+ PK V++
Sbjct: 200 AKILGLDLGPKGEVLVNEYL 219
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 65.4 bits (158), Expect = 1e-12
Identities = 35/213 (16%), Positives = 64/213 (30%), Gaps = 54/213 (25%)
Query: 204 AVVLGGGYIAVEFASIWRGMGSTVDLLFR------------------------------- 232
A+ +GGG ++ R MG ++ R
Sbjct: 45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART 104
Query: 233 ------------KELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD 280
K + ++ D RA + ++ ++ V
Sbjct: 105 FSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHT 164
Query: 281 HGEE---IVADVVLFATGRAPNTKRLNLKAVGVEVDQT--------GAVKVDENSRTNVP 329
A ++ A G P T + + E+ + G V V+E +T+VP
Sbjct: 165 VEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVP 224
Query: 330 SIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQ 362
+++AVGD+ A G A+ V G +
Sbjct: 225 NVYAVGDLIGGPMEMFKARKSGCYAARNVMGEK 257
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.5 bits (195), Expect = 2e-18
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 183 PGQEL----AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR 238
PG E+ ++S ALSL+E+PKR ++GGG I +E S++ +GS V ++ +
Sbjct: 1 PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA 60
Query: 239 GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVI-------TDHGEEIVADVVL 291
D E+ + L+ +G++ T + ++++ V T+ E + A+V+L
Sbjct: 61 SMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL 120
Query: 292 FA 293
A
Sbjct: 121 VA 122
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.3 bits (199), Expect = 4e-18
Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
Query: 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI 81
+DFDL +IG GSGG+ AA+ +A F KV + + P G+GGTCV GC+PKK+
Sbjct: 2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDF-VTPTPLGTNWGLGGTCVNVGCIPKKL 60
Query: 82 LVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE 141
+ A G L+D+R+YGW++ + + DW+K+ + + I LN Y+ L V
Sbjct: 61 MHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYEN 120
Query: 142 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182
GK +GP+++ T G + YSA+ LIATG R + I
Sbjct: 121 AYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGI 161
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.2 bits (178), Expect = 2e-15
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 296 RAPNTKRLNLKAVGVEVDQ-TGAVKVDENSRTNVPSIWAVGDVTN-RMNLTPVALMEGTC 353
R T+ + L+ VGV++++ TG + V + +TNVP I+A+GD+ ++ LTPVA+ G
Sbjct: 162 RDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRL 221
Query: 354 FAKTVFGGQPCKPD 367
A+ ++GG K D
Sbjct: 222 LAQRLYGGSTVKCD 235
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 76.3 bits (187), Expect = 2e-17
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 371 VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAET 430
+ F P + VVG + EQA +QG D +V F +S + +++V +
Sbjct: 4 IAAVCFTDPEVVVVGKTPEQASQQGL-DCIVAQFPFAANGRAMSLESKSGFVRVVARRDN 62
Query: 431 EKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAE 475
+LG G E+ A +L+ GA T+ HP+ E
Sbjct: 63 HLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGE 107
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 77.8 bits (190), Expect = 7e-17
Identities = 61/247 (24%), Positives = 96/247 (38%), Gaps = 18/247 (7%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
FDL VIGAGSGG+ AA +A K +GGTCV GCVPKK++V
Sbjct: 4 FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMV 63
Query: 84 YGASFGGELEDARSYGWEVHEK-IDFDWKKLLQKKTDEILRLNGIYKRLL-SNAGVKLYE 141
GA + L ++ +GWE + +WK L+ K + +L +N Y + G++ +
Sbjct: 64 TGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFL 123
Query: 142 GEGKIVGPNEVEVTQLDGT----KLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSL 197
G G + N V V + K +HIL + S L
Sbjct: 124 GWGSLESKNVVNVRESADPASAVKERLETEHIL-------LASGSWPHMPNGRSPRTKDL 176
Query: 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257
+ ++ GG E++ + + + + +E A + + G
Sbjct: 177 QLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA-LVDTVFGT-- 233
Query: 258 NLHPRTT 264
PR T
Sbjct: 234 --TPRKT 238
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 73.9 bits (180), Expect = 1e-15
Identities = 43/117 (36%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 252 LEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFA---TGRAPNTKRLNLKAV 308
G G E I+ + GR+P TK L L+
Sbjct: 122 FLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNGRSPRTKDLQLQNA 181
Query: 309 GVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCK 365
GV + G V+VDE SRTNV +I+A+GDVTNR+ LTPVA+ E TVFG P K
Sbjct: 182 GVMIKN-GGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTTPRK 237
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 77.0 bits (188), Expect = 1e-16
Identities = 57/217 (26%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
FD+ VIGAG GG AA SA G K + E + GGTC+ GC+P K L+
Sbjct: 4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTAL---GGTCLNVGCIPSKALL 60
Query: 84 YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE 143
+ E ++ ++ D ++ +K + L G L+ GV L+EG
Sbjct: 61 DSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGH 120
Query: 144 GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPK 202
GK++ +VEVT DG+ +++++A+GS+ P P + +D ++L+E
Sbjct: 121 GKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGF 180
Query: 203 RAV------------VLGGGYIAVEFASIWRGMGSTV 227
V +G A G V
Sbjct: 181 IYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVV 217
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 65.5 bits (158), Expect = 8e-13
Identities = 26/109 (23%), Positives = 44/109 (40%)
Query: 255 RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQ 314
G E+ ++ +V+ + + R P T L GV +D+
Sbjct: 118 EGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDE 177
Query: 315 TGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQP 363
G + VD+ T+VP ++A+GDV L A EG A+ + G +
Sbjct: 178 RGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKA 226
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 73.7 bits (180), Expect = 1e-16
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 9/121 (7%)
Query: 182 IPGQELA----ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL 237
+PG + ++S AL+L E+PK+ VV+G GYI +E S+W +GS V ++ +
Sbjct: 2 LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV 61
Query: 238 RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH-----GEEIVADVVLF 292
D E+R R+LE +G+ +T + + S +GVK+ + I ADVVL
Sbjct: 62 PTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLV 121
Query: 293 A 293
+
Sbjct: 122 S 122
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 72.1 bits (176), Expect = 5e-16
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 181 PIPGQELAI----TSDEALSLEEL---PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233
+ G + + T ++A ++ R +++GGG I +E A+ R G V L+ +
Sbjct: 3 TLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 62
Query: 234 ELPL-RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLF 292
+ R + VAR +G++L ++ V+ D G I AD+V+
Sbjct: 63 PRLMSRAAPATLADFVARYHAAQGVDLRFERSVTG----SVDGVVLLDDGTRIAADMVVV 118
Query: 293 ATG 295
G
Sbjct: 119 GIG 121
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 74.0 bits (180), Expect = 5e-16
Identities = 36/180 (20%), Positives = 57/180 (31%), Gaps = 24/180 (13%)
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDD-----------EMRAVV 248
L VVLG G +V F + R G + + R +D + +
Sbjct: 2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIR 61
Query: 249 ARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNL-KA 307
+ T + + V G + ++ ATG AP N A
Sbjct: 62 LDCKRAPEVEWLLGVTAQSFDP--QAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALA 119
Query: 308 VGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMN----------LTPVALMEGTCFAKT 357
+ + VD RT P ++A+GDVT + N A +G A+
Sbjct: 120 RAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH 179
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.0 bits (185), Expect = 1e-15
Identities = 29/327 (8%), Positives = 74/327 (22%), Gaps = 22/327 (6%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
++D+ V+G G + + G KV + + GG + + K+
Sbjct: 6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMD------RNPYYGGESSSITPLEELYKRFQ 59
Query: 83 VYGASFGGELEDARSYGWEVHEKIDFDWKK---LLQKKTDEILRLNGIYKRLLSNAGVKL 139
+ + + + + + LL + L + + G
Sbjct: 60 LLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIY 119
Query: 140 YEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSD------- 192
+ + + + + + + + D
Sbjct: 120 KVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDL 179
Query: 193 EALSLEELPKRAVVLGGGYIAVEFA-----SIWRGMGSTVDLLFRKELPLRGFDDEMRAV 247
++ + + I S L E+
Sbjct: 180 GQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQG 239
Query: 248 VARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKA 307
AR G + ++I V + GE ++ P+ ++ +
Sbjct: 240 FARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVPIDDGS 299
Query: 308 VGVEVDQTGAVKVDENSRTNVPSIWAV 334
+ T I +
Sbjct: 300 ESQVFCSCS-YDATTHFETTCNDIKDI 325
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 70.7 bits (172), Expect = 3e-15
Identities = 21/152 (13%), Positives = 42/152 (27%), Gaps = 27/152 (17%)
Query: 172 ATGS-RAQRAPIPGQELA----ITSDEALSLEELPKRAVVL---GGGYIAVEFASIWRGM 223
G+ PIPG + + +T ++ + ++ + VV+ ++A A
Sbjct: 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATA 63
Query: 224 GSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH-- 281
G V ++ L + R L + + + I
Sbjct: 64 GHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGS 123
Query: 282 -----------------GEEIVADVVLFATGR 296
I D ++ TGR
Sbjct: 124 KRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR 155
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (171), Expect = 3e-15
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 190 TSDEALSLEEL---PKRAVVLGGGYIAVEFA----SIWRGMGSTVDLLFRKELPL-RGFD 241
+ SLE++ K ++GGG++ E A R +G+ V LF ++ + +
Sbjct: 23 KIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILP 82
Query: 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295
+ + + G+ + P ++ + S + + G ++ D ++ A G
Sbjct: 83 EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 70.2 bits (170), Expect = 1e-14
Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 24/183 (13%)
Query: 201 PKRAVVLGGGYIAVEFASIWRGMGS--TVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258
V++G G VE A R G + L+ + +A +A +
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62
Query: 259 LHP-----------RTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKA 307
L + + + +VI G + D ++ ATG P L A
Sbjct: 63 LRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCEL-A 121
Query: 308 VGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN----------RMNLTPVALMEGTCFAKT 357
+ + ++E+ +T+ P I AVGD R+ P AL + A
Sbjct: 122 SAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAI 181
Query: 358 VFG 360
+ G
Sbjct: 182 LCG 184
|
| >d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 66.9 bits (163), Expect = 4e-14
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 6/106 (5%)
Query: 379 PPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASM 438
+ G++E A + G + T + + + +Q K KLV D ET ++LGA +
Sbjct: 13 YKFASTGINEVMAQKLG-KETKAVTVVEDYLMDFNPDKQ-KAWFKLVYDPETTQILGAQL 70
Query: 439 CGPE-APEIMQGIAVALKCGATKAQF-DSTVGIHP--SSAEEFVTM 480
+ I++A++ T + P +
Sbjct: 71 MSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINT 116
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 67.3 bits (163), Expect = 2e-13
Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 20/165 (12%)
Query: 18 EQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCV 77
+QT L +IG G GG AA + G + E +GGTC+ GC+
Sbjct: 1 QQT-IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVE----------GQALGGTCLNIGCI 49
Query: 78 PKKILVYG---ASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSN 134
P K L++ + G V D + + K + RL LL
Sbjct: 50 PSKALIHVAEQFHQASRFTEPSPLGISV-ASPRLDIGQSVAWKDGIVDRLTTGVAALLKK 108
Query: 135 AGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179
GVK+ G K++ +VEV +H+L+ATGS +
Sbjct: 109 HGVKVVHGWAKVLDGKQVEVDGQR-----IQCEHLLLATGSSSVE 148
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 56.9 bits (136), Expect = 6e-10
Identities = 33/213 (15%), Positives = 64/213 (30%), Gaps = 50/213 (23%)
Query: 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL---------------------- 235
+ + +++GGG A +G L+ + L
Sbjct: 2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQF 61
Query: 236 ---------------------PLRGFDDEMRAVVARNLEGRGINLH-PRTTIKELIKSEE 273
+ +V R G L +
Sbjct: 62 HQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVL 121
Query: 274 GVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQT------GAVKVDENSRTN 327
K + G+ I + +L ATG + + G ++ A+ +DE +T+
Sbjct: 122 DGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTS 181
Query: 328 VPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360
+ ++WA+GDV L A+ +G A+ + G
Sbjct: 182 MHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAG 214
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 63.3 bits (153), Expect = 7e-13
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 182 IPGQELA-----ITSDEALSLEEL-----PKRAVVLGGGYIAVEFASIWRGMGSTVDLLF 231
IPG++L A+ L++ VV+G GYI +E A + G V ++
Sbjct: 1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 60
Query: 232 RKELPL-RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVV 290
+ PL D E V+ +E I + T++ KV+TD AD+V
Sbjct: 61 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTD-KNAYDADLV 119
Query: 291 LFA 293
+ A
Sbjct: 120 VVA 122
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 65.5 bits (158), Expect = 1e-12
Identities = 40/238 (16%), Positives = 75/238 (31%), Gaps = 31/238 (13%)
Query: 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVY 84
+ ++G G G AA +A + + I + G+GG V+ CVP K +
Sbjct: 3 RIVILGGGPAGYEAALVAATSHPETTQVTV----IDCD---GIGGAAVLDDCVPSKTFIA 55
Query: 85 GASFGGELEDARSYGWEVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG- 142
EL A G+ + ++ + + L + GV++ G
Sbjct: 56 STGLRTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR 115
Query: 143 -----EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSL 197
+ + ++ T DG+ + A +L+ATG+ + P
Sbjct: 116 GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVG 175
Query: 198 EELPKRAV-------------VLGGGYIA--VEFASIWRGMGSTV--DLLFRKELPLR 238
+L + + G + AS+ G L P+R
Sbjct: 176 IQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIR 233
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 58.5 bits (140), Expect = 2e-10
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 311 EVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQP 363
++ + + VD SRT I+A GD T + L VA M+G G
Sbjct: 177 QLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGV 229
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 60.7 bits (145), Expect = 1e-10
Identities = 47/346 (13%), Positives = 96/346 (27%), Gaps = 23/346 (6%)
Query: 28 VIGAGSGGVRAARFSANFGAK-VGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGA 86
V+GAG G+ AA+ + G + I E +++ I GG + + GA
Sbjct: 5 VVGAGMSGISAAKRLSEAGITDLLILE------ATDHI---GGRMHKTNFAGINVEL-GA 54
Query: 87 SFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKI 146
++ + + + + + V+
Sbjct: 55 NWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADS 114
Query: 147 VGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVV 206
V +++ + + + Q + E V
Sbjct: 115 VEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVT 174
Query: 207 LGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIK 266
+ + S + V E + + ++ + L ++
Sbjct: 175 SLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVR 234
Query: 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRL-----NLKAVGVE-VDQTGAVKV 320
E+ S GV V T+ AD V+ + L L V + Q V V
Sbjct: 235 EIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGV 294
Query: 321 D----ENSRTNVPSIWAVGDVTNRMNLTPV--ALMEGTCFAKTVFG 360
+ + R V ++ G+ T+ V A + G A+ +
Sbjct: 295 NRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN 340
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 57.6 bits (138), Expect = 7e-10
Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 21/217 (9%)
Query: 16 QEEQTHFDFDLFVIGAGSGGVRAARFSA-NFGAKVGICELPFHPISSEVIGGVGGTCVIR 74
+ T+ + D+ V+GAGS G+ AA + N +V I E GG +
Sbjct: 26 TDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAII---------EQSVSPGGGAWLG 76
Query: 75 GCVPKKILV------YGASFGGELEDARSYGWEVHEKIDFD--WKKLLQKKTDEILRLNG 126
G + ++V + G ++ +Y H + KLL + ++
Sbjct: 77 GQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVA 136
Query: 127 IYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQE 186
++ V +V N + +D + AK ++ + G G +
Sbjct: 137 AEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVM--EAKIVVSSCGHDGPFGAT-GVK 193
Query: 187 LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGM 223
+ + + + I + GM
Sbjct: 194 RLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGM 230
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 54.6 bits (130), Expect = 8e-10
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 190 TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA 249
T E L E VV+GG AVE+ + G +L R E D+E RA V
Sbjct: 12 TLVEELD-YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVL 70
Query: 250 RNLEGRGINLHPRTTIKELIKSEEG-----VKVITDHGEEIVADVVLFATG 295
++ +G+ + + + + + G V + + I D V G
Sbjct: 71 DRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 54.8 bits (130), Expect = 1e-08
Identities = 48/361 (13%), Positives = 96/361 (26%), Gaps = 45/361 (12%)
Query: 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCV---------- 77
VIGAG G+ AA G V + E + GG + G +
Sbjct: 6 VIGAGVSGLAAAYKLKIHGLNVTVFE------AEGKAGGKLRSVSQDGLIWDEGANTMTE 59
Query: 78 -PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAG 136
+ S G + LL ++++ N +
Sbjct: 60 SEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQML 119
Query: 137 VKLYEGEGKIV---GPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDE 193
++ + K + + V+ LI P S
Sbjct: 120 LEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFP 179
Query: 194 ALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVV---AR 250
L E +V+LG + + + +++ F M+ + +
Sbjct: 180 ELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICK 239
Query: 251 NLEGRGINLHPRTTIKELIKSEEGV---------KVITDHGEEIVADVVLFATGRAPNTK 301
+L + L+ R +E+ EE D V+ + K
Sbjct: 240 DLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAP-LCDVK 298
Query: 302 RLNLKAVG-----------VEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALME 350
+ + G + + + N+P ++ G+ +++ AL
Sbjct: 299 SMKIAKRGNPFLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLSVGK-ALSS 357
Query: 351 G 351
G
Sbjct: 358 G 358
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 1e-07
Identities = 37/297 (12%), Positives = 70/297 (23%), Gaps = 26/297 (8%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
D+D+ V+G G + + G KV + + GG + + K
Sbjct: 5 DYDVIVLGTGITECILSGLLSVDGKKVLHID------KQDHYGGEAASVTLSQLYEKFKQ 58
Query: 83 VYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG 142
+ E + + W V F + + +G
Sbjct: 59 NPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQG 118
Query: 143 EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSD--------EA 194
+ V NE+E + + + + + D
Sbjct: 119 KIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYK 178
Query: 195 LSLEELPKRAVVLGGGYIAVE----------FASIWRGMGSTVDLLFRKELPLRGFDDEM 244
L K + + F I S L E+
Sbjct: 179 FGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGEL 238
Query: 245 RAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPN 299
AR G T I E++ ++ + + A +V+ P
Sbjct: 239 PQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPE 295
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 49.0 bits (115), Expect = 1e-07
Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 17/170 (10%)
Query: 203 RAVVLGGGYIAVEFASIWRGMGSTV--------DLLFRKELPLRGFDDEMRAVVARNLEG 254
+ V++G G E A + +L+
Sbjct: 2 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDW 61
Query: 255 RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQ 314
+E + G KV+ E+ D ++ ATG + G+
Sbjct: 62 YRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLA---RRSGIHTG- 117
Query: 315 TGAVKVDENSRTNVPSIWAVGDVTNRMN----LTPVALMEGTCFAKTVFG 360
+ +D+N RT+ ++A+GD A+ + A + G
Sbjct: 118 -RGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG 166
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 47.2 bits (111), Expect = 3e-07
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 190 TSDEALSLEEL---PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE-LPLRGFDDEMR 245
T ++A + R VV+GGGYI +E A+ V LL + R +
Sbjct: 21 TLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVS 80
Query: 246 AVVARNLEGRGINLHPRTTIKELIKSEEGVK---VITDHGEEIVADVVLFATG 295
A G+++ T + S + K V+ + G + AD+V+ G
Sbjct: 81 AFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 48.7 bits (114), Expect = 3e-07
Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 33/197 (16%)
Query: 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF---------------DDEMRAV 247
+ +VLG + E + ++ + ++ F + +R +
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61
Query: 248 VARNLEGRGINLHPRTTIKELIKSEEG---VKVITDHGEEIVADVVLFATGRAPNTKRLN 304
+E RG+N+ T I + E +++ D ++ + G P
Sbjct: 62 TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121
Query: 305 LKAVGVEVDQT-----GAVKVDENSRTNVPSIWAVGDVTN----------RMNLTPVALM 349
G +K DE RT+ P ++AVGD T + L A
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181
Query: 350 EGTCFAKTVFGGQPCKP 366
+G K + P
Sbjct: 182 QGRFAVKNLEEPVKPFP 198
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 3e-06
Identities = 39/275 (14%), Positives = 83/275 (30%), Gaps = 21/275 (7%)
Query: 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVY 84
D+ V+G G G+ AA+ + G V + E + + +GG T + +
Sbjct: 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLE------ARDRVGGRTYTLRNQKVKY---VDL 51
Query: 85 GASFGGE-----LEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKL 139
G S+ G L A+ G E ++ + ++L+ + G + + +
Sbjct: 52 GGSYVGPTQNRILRLAKELGLETYKV--NEVERLIHHVKGKSYPFRGPFPPVWNPITYLD 109
Query: 140 YEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEE 199
+ + + E+ K + + + + E A
Sbjct: 110 HNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWT--ESAKQLATLFVNLC 167
Query: 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259
+ + + +E G V R ++ G +
Sbjct: 168 VTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGG---SGQVSERIMDLLGDRV 224
Query: 260 HPRTTIKELIKSEEGVKVITDHGEEIVADVVLFAT 294
+ + ++ E V V T + E A V+ A
Sbjct: 225 KLERPVIYIDQTRENVLVETLNHEMYEAKYVISAI 259
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Score = 46.7 bits (109), Expect = 3e-06
Identities = 48/327 (14%), Positives = 96/327 (29%), Gaps = 25/327 (7%)
Query: 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGC-VPKKILVYGA 86
V+G G G+ A + G + E SS +GG GT + G V + +
Sbjct: 5 VVGGGISGLAVAHHLRSRGTDAVLLE------SSARLGGAVGTHALAGYLVEQGPNSFLD 58
Query: 87 SFGGELEDARSYGWEVH-EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGK 145
A + E D K+ + + L++ + L
Sbjct: 59 REPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRV 118
Query: 146 IVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAV 205
+ L+ + L ++ + A ++ P
Sbjct: 119 AGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVK 178
Query: 206 VLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG----FDDEMRAVVARNLEGRGINLHP 261
+ + A + L L G FD ++ ++ G H
Sbjct: 179 MEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHV 238
Query: 262 RTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRAPNTKRL------NLKAVGVEV 312
++ L + + G ++I + E+ V+ A A T +L L A+ +
Sbjct: 239 GARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAP-AHATAKLLRPLDDALAALVAGI 297
Query: 313 DQTGA---VKVDENSRTNVPSIWAVGD 336
G V + + +P + +G+
Sbjct: 298 YNLGHLERVAAIDAALQRLPGLHLIGN 324
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 44.4 bits (103), Expect = 8e-06
Identities = 22/163 (13%), Positives = 43/163 (26%), Gaps = 16/163 (9%)
Query: 201 PKRAVVLGGGYIAVEFASIWRGMGSTVD--LLFRKELPLRGFDDEMRAVVARNLEGRGIN 258
++ VV+GGG A + +++ L+ + R LE
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61
Query: 259 LHPRTTIKELIKSEEGV-------KVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVE 311
+ + V T G E D + A G ++ +A +
Sbjct: 62 YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIA 121
Query: 312 -------VDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVA 347
V + + I +GD + +
Sbjct: 122 QIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSG 164
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 44.1 bits (103), Expect = 2e-05
Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 12/171 (7%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+ +IGAG+ G+ A A G V + + ++ G G V +
Sbjct: 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYL 64
Query: 84 YGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIY------KRLLSNAGV 137
+ AR W+ + +K+ ++ G K G
Sbjct: 65 SQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA 124
Query: 138 KLYEG----EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG 184
K+ + + + +E L + K++++ATG + P G
Sbjct: 125 KILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS--MPGLG 173
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (97), Expect = 1e-04
Identities = 35/323 (10%), Positives = 72/323 (22%), Gaps = 91/323 (28%)
Query: 19 QTHFDFDLFVIGAGSGGVRAARFSA--NFGAKVGICELPFHPISSEVIGGVGGTCVIRGC 76
D+ ++GAGS G+ AA A KV I E P GG + G
Sbjct: 46 DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP---------GGGSWLGGQ 96
Query: 77 VPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAG 136
+ +++ ++ + +I ++ + L ++ + ++L
Sbjct: 97 LFSAMVM----------RKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPN 146
Query: 137 VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALS 196
VKL+ + +
Sbjct: 147 VKLFNATCVEDLVTRPPTEKGEV------------------------------------- 169
Query: 197 LEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256
+ + V A G M V +
Sbjct: 170 ------TVAGVVTNWTLVTQAH--------------------GTQCCMDPNVIELAGYKN 203
Query: 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTG 316
+ +I S G D + + +
Sbjct: 204 DGTRDLSQKHGVILSTTG----HDGPFGAFCAKRIVDIDQNQKLGGMK---GLDMNHAEH 256
Query: 317 AVKVDENSRTNVPSIWAVGDVTN 339
V + + V +++ G
Sbjct: 257 DVVIHSGAYAGVDNMYFAGMEVA 279
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 40.4 bits (93), Expect = 3e-04
Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 13/167 (7%)
Query: 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL 82
+D+ VIG G G+ AA +A GA V + + + + ++ GG C + +P +
Sbjct: 2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLD-KGNKLGRKLAISGGGRCNVTNRLPLDEI 60
Query: 83 VYGASFGGELEDARSYGWEVHEKIDF--DWKKLLQKKTDEILRLNGIYKRLLSNAGVKLY 140
V G + + + I F + L+++ + + + +A +
Sbjct: 61 VKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRL 120
Query: 141 EGEGKIVGPNE--VEVTQLDG--------TKLSYSAKHILIATGSRA 177
+ G + N + +G T H++IA G ++
Sbjct: 121 KDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 167
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 50/338 (14%), Positives = 101/338 (29%), Gaps = 34/338 (10%)
Query: 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGAS 87
++GAG G+ AA A G +V + E +SE GG T R G
Sbjct: 35 IVGAGMAGLSAAYVLAGAGHQVTVLE------ASERPGGRVRT--YRNEEAGWYANLGPM 86
Query: 88 FGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV 147
+ E K D + Q+ + + I K++ ++ + G +
Sbjct: 87 RL---PEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVG-----EVKKDPGLLK 138
Query: 148 GPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEEL--PKRAV 205
P + +L + ++ R + I + ++ E L E P
Sbjct: 139 YPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVD 198
Query: 206 VLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTI 265
++G + D +F E D M + +H +
Sbjct: 199 MIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQV 258
Query: 266 KELIKSEEGVKVI----TDHGEEIVADVVLFATGRA--------PNTKRLNLKAVGVEVD 313
++ ++++ V V+ + + AD V+ T P A+
Sbjct: 259 IKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFT 318
Query: 314 QTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEG 351
+ + I+ G+ T + ++
Sbjct: 319 PYQFQHFSDPLTASQGRIYFAGEYTAQ----AHGWIDS 352
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 24/166 (14%)
Query: 197 LEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256
LE R ++G G A A+I+ LLF + G
Sbjct: 1 LETHNTRLCIVGSGPAAHT-AAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPG 59
Query: 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAV-------- 308
++ + T E V V + T + A
Sbjct: 60 FPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGA 119
Query: 309 --------------GVEVDQTGAVKVDENS-RTNVPSIWAVGDVTN 339
GVE+D G V + +T+VP ++A GDV +
Sbjct: 120 VAKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQD 165
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 37.9 bits (87), Expect = 9e-04
Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 44/157 (28%)
Query: 181 PIPGQELA--ITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL---FRKE 234
PI G + ++ + L + + ++G G I + A G + F E
Sbjct: 6 PIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNE 65
Query: 235 LPL-----------------------------------RGFDDEMRAVVARNLEGRGINL 259
+ +G + L RG+ +
Sbjct: 66 WGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKM 125
Query: 260 HPRTTIKELIKSEEGVKV-ITDHGEEIVADVVLFATG 295
P + +++ ++G+ V I + + D V+ G
Sbjct: 126 IPGVSYQKI--DDDGLHVVINGETQVLAVDNVVICAG 160
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Score = 37.3 bits (86), Expect = 0.002
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 12/84 (14%)
Query: 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV 83
+ + ++GAG G A + A G +VG+ + V PK
Sbjct: 3 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS--------LDAVMMPF----LPPKPPFP 50
Query: 84 YGASFGGELEDARSYGWEVHEKID 107
G+ + W H +
Sbjct: 51 PGSLLERAYDPKDERVWAFHARAK 74
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Score = 37.6 bits (86), Expect = 0.003
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 11 LSQPNQEEQTHFDFDLFVIGAGSGG-VRAARFSANFGAKVGICE 53
LS P++ +D+ + G G G AA+ + N KV + E
Sbjct: 14 LSDPSKVAGKTYDY--IIAGGGLTGLTVAAKLTENPKIKVLVIE 55
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 36.7 bits (83), Expect = 0.003
Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 6/167 (3%)
Query: 198 EELPKRAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256
E + +LG G ++ AS +G S + + ++E E+
Sbjct: 1 EAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNF 60
Query: 257 INLHPRTTIKELIKSEEGVKVITDHGE----EIVADVVLFATGRAPNTKRLNLKAVGVEV 312
+ ++I + + A + ++ ++
Sbjct: 61 EIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKF 120
Query: 313 DQTGAVKVDENS-RTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358
++ +VD + +T+ P ++A GD+ N T ++ +G + +
Sbjct: 121 NRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYI 167
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 498 | |||
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 100.0 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 100.0 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 100.0 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 100.0 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 100.0 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 100.0 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.98 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.97 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.97 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.97 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.97 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.97 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.96 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.96 | |
| d1v59a3 | 123 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.94 | |
| d1dxla3 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.94 | |
| d3lada3 | 124 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.94 | |
| d1xdia2 | 118 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.94 | |
| d3grsa3 | 115 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.94 | |
| d1ebda3 | 115 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.94 | |
| d1ojta3 | 128 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.93 | |
| d1gesa3 | 115 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.93 | |
| d1lvla3 | 123 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.93 | |
| d1onfa3 | 119 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.93 | |
| d1feca3 | 128 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.92 | |
| d1mo9a3 | 140 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.89 | |
| d1h6va3 | 133 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.89 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.87 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.86 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.85 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.85 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.84 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.83 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.83 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.83 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.82 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.82 | |
| d1nhpa3 | 126 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.82 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.82 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.8 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.8 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.79 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.77 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.77 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.76 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.76 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.74 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.73 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.68 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.66 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.66 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.65 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.62 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.62 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.6 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.6 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.57 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.56 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.55 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.51 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.41 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.4 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.32 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.3 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 99.28 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 99.28 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.25 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.24 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.24 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 99.23 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 99.23 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 99.22 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 99.21 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.17 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.17 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.12 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.08 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.08 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.0 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.99 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.97 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.96 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.96 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.94 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.94 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.92 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.91 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.88 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.88 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.88 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.86 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.83 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.78 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.77 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.73 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.73 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.72 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.72 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.72 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 98.71 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.67 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.66 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.65 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.64 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.64 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.64 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.64 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.63 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.62 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.58 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.57 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.56 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.5 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.5 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.5 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.49 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.49 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.49 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.46 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.45 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.44 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.43 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.43 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.42 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.42 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.4 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.39 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.31 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.31 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.31 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.28 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 98.26 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.24 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.18 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.15 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.13 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.08 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.08 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.02 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 97.94 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.88 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 97.87 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.86 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 97.82 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 97.78 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.78 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.7 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.69 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.67 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.66 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.64 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 97.63 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.62 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 97.54 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.5 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.48 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.45 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.44 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.42 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 97.23 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 97.23 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 97.14 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 97.0 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.0 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.95 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.94 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 96.92 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 96.91 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 96.79 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 96.49 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.49 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.37 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 96.27 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.27 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 96.21 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.17 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 96.07 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.01 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.95 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.94 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.83 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.78 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.72 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.7 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.65 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 95.5 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.22 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.94 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 94.9 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 94.87 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 94.77 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.73 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 94.67 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.67 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.64 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.62 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 94.59 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.59 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.45 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.4 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.33 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 94.26 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.1 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.05 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 94.03 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.03 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 93.87 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 93.79 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 93.71 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.68 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 93.63 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 93.46 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.29 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 93.15 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 93.11 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 92.93 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 92.8 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.52 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 92.33 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.25 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 92.12 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 91.8 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 91.74 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 91.64 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 91.51 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 91.27 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 91.27 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.08 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 91.05 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 91.0 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 90.95 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 90.95 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 90.52 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 90.4 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.31 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 90.3 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 90.12 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 90.01 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.88 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 89.78 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 89.53 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 89.51 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 89.25 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 88.92 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 88.92 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 88.75 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 88.7 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 88.59 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 88.56 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 88.46 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 88.39 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 88.33 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 88.16 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 88.08 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 87.98 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 87.9 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 87.89 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 87.63 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 87.62 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 87.4 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 87.28 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 87.19 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 87.05 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 87.01 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.0 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 86.82 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 86.81 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 86.56 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 86.45 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 86.33 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 86.19 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 86.07 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 85.74 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 85.51 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 84.97 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 84.95 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 84.89 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 84.44 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 84.36 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 84.34 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 84.15 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 83.96 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 83.66 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 83.14 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 82.94 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 82.94 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 82.9 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 82.84 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 82.77 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 82.76 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 82.6 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 82.49 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 82.33 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 82.08 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 81.89 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 81.36 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 80.8 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 80.47 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 80.43 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 80.29 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 80.2 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 80.19 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 80.01 |
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.4e-35 Score=273.94 Aligned_cols=218 Identities=26% Similarity=0.456 Sum_probs=186.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCC---CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFG---AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g---~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
.+|+||||||||++||.++++.| ++|+|+| +..+||+|+|+||+|+|.|+..++..+.+++...||+
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liE----------k~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~ 71 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVID----------CDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGF 71 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEE----------SSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTB
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEe----------cCCCCceeecccccccEEEEeecchhhhhhhhhhcCC
Confidence 58999999999999999988744 6899999 6889999999999999999999999999998998887
Q ss_pred ccc-cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeC------CEEEEEeCCCceEEEEcCeEEEcC
Q 042564 101 EVH-EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGP------NEVEVTQLDGTKLSYSAKHILIAT 173 (498)
Q Consensus 101 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~------~~~~v~~~~g~~~~~~~d~liiAt 173 (498)
.+. ....+||..+..+.+.............++..+|+++.+.+.+++. +.+.+...+|...++++|.+|+||
T Consensus 72 ~i~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAt 151 (233)
T d1xdia1 72 HIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVAT 151 (233)
T ss_dssp C------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECC
T ss_pred cccccCceeeeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeec
Confidence 654 2467999999999888887777778888899999999999888765 456777778877889999999999
Q ss_pred CCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 042564 174 GSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLE 253 (498)
Q Consensus 174 G~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~ 253 (498)
|..|+.++.
T Consensus 152 G~~p~~~~~----------------------------------------------------------------------- 160 (233)
T d1xdia1 152 GASPRILPS----------------------------------------------------------------------- 160 (233)
T ss_dssp CEEECCCGG-----------------------------------------------------------------------
T ss_pred Ccccccccc-----------------------------------------------------------------------
Confidence 988765521
Q ss_pred hCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 254 GRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 254 ~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
|+.|+.+.++++..+++++++|+|.||++|||++|+|||
T Consensus 161 -----------------------------------------~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA 199 (233)
T d1xdia1 161 -----------------------------------------GSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYA 199 (233)
T ss_dssp -----------------------------------------CEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEE
T ss_pred -----------------------------------------cccccccccccchhhhcccCCCcCCcCCCcccCCCCEEE
Confidence 444555556678889999999999999999999999999
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHHhCCCC
Q 042564 334 VGDVTNRMNLTPVALMEGTCFAKTVFGGQP 363 (498)
Q Consensus 334 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~ 363 (498)
+|||++.+++++.|..+|++||+|++|...
T Consensus 200 ~GDv~~~~~l~~~A~~~g~~aa~~~~g~~~ 229 (233)
T d1xdia1 200 AGDCTGLLPLASVAAMQGRIAMYHALGEGV 229 (233)
T ss_dssp CSGGGTSCSCHHHHHHHHHHHHHHHTTCCC
T ss_pred EEEeCCCchhHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999998543
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.3e-34 Score=268.17 Aligned_cols=231 Identities=38% Similarity=0.695 Sum_probs=195.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
-+|||+||||||||++||++|++.|++|+|||+.... .......+||+|++.||+|++.++....+.........||+.
T Consensus 2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~-~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~ 80 (235)
T d1h6va1 2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT-PLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWK 80 (235)
T ss_dssp CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC-TTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBC
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC-CcccccccccccccccccchhhhhhhhhhhhHhhhhhccccc
Confidence 4699999999999999999999999999999952221 111245689999999999999999999999888889999988
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
.......+|..+..+....+..+...+...+++.+|+++.++..+.+++...+....+....+.++.+++++|++|+.++
T Consensus 81 ~~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~ 160 (235)
T d1h6va1 81 LEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLG 160 (235)
T ss_dssp CCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCS
T ss_pred cccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEE
Confidence 87778899999999999999888888888899999999999999999999999888877778999999999999987764
Q ss_pred CCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEc
Q 042564 182 IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 182 i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
+
T Consensus 161 i------------------------------------------------------------------------------- 161 (235)
T d1h6va1 161 I------------------------------------------------------------------------------- 161 (235)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
Confidence 3
Q ss_pred CccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCC-CCCeEcCCCCCCCCCCeEEecccCC-
Q 042564 262 RTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQ-TGAVKVDENSRTNVPSIWAVGDVTN- 339 (498)
Q Consensus 262 ~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~-~g~i~vd~~~~t~~~~iya~GD~~~- 339 (498)
..+++..+.++..+++++. .|+|.||++||||+|+|||+|||+.
T Consensus 162 ----------------------------------~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g 207 (235)
T d1h6va1 162 ----------------------------------RDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEG 207 (235)
T ss_dssp ----------------------------------EEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTT
T ss_pred ----------------------------------eeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCC
Confidence 1122222235566777775 5899999999999999999999985
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCCCCC
Q 042564 340 RMNLTPVALMEGTCFAKTVFGGQPCKP 366 (498)
Q Consensus 340 ~~~~~~~A~~~g~~aa~~i~~~~~~~~ 366 (498)
.+.+++.|..+|++||++|+|+.+.++
T Consensus 208 ~~~l~~~A~~eG~~aa~~~~g~~~~~~ 234 (235)
T d1h6va1 208 KLELTPVAIQAGRLLAQRLYGGSTVKC 234 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CcccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 467999999999999999998765543
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=4.2e-34 Score=262.33 Aligned_cols=220 Identities=34% Similarity=0.567 Sum_probs=193.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+||||||||||||++||..+++.|++|+||| ++.+||+|.+.+|+|++.++..............+....
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIE----------k~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVE----------KGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKA 72 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEe----------cCCCCcceeccccccccccccccchhhhhhhhhhhcccc
Confidence 5999999999999999999999999999999 788999999999999999999888777777777766554
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
. ...+++..+..+....+..+...+...+...+++++.+++.+.+.....+....+ ...+..+.+|+|+|..|..
T Consensus 73 ~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~-~~~~~~~~iiIa~g~~p~~--- 147 (223)
T d1ebda1 73 E-NVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDS-AQTYTFKNAIIATGSRPIE--- 147 (223)
T ss_dssp C-SCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTE-EEEEECSEEEECCCEEECC---
T ss_pred h-hheeeHHHHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceecccc-ceEEecccEEEEcCCCccc---
Confidence 3 4578888888888888888888888888889999999999999999888876543 4589999999999987641
Q ss_pred CCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcC
Q 042564 183 PGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPR 262 (498)
Q Consensus 183 ~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 262 (498)
T Consensus 148 -------------------------------------------------------------------------------- 147 (223)
T d1ebda1 148 -------------------------------------------------------------------------------- 147 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCC
Q 042564 263 TTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMN 342 (498)
Q Consensus 263 ~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~ 342 (498)
++|++||++.|.++++|++++++|+|.||+++|||+|+|||+|||++.+.
T Consensus 148 ------------------------------~~G~~p~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~ 197 (223)
T d1ebda1 148 ------------------------------LVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA 197 (223)
T ss_dssp ------------------------------BSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC
T ss_pred ------------------------------cccceecCCCCChHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcc
Confidence 25889999998899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCC
Q 042564 343 LTPVALMEGTCFAKTVFGGQPCKPDY 368 (498)
Q Consensus 343 ~~~~A~~~g~~aa~~i~~~~~~~~~~ 368 (498)
+++.|..||++||++|+|.+ .+.+|
T Consensus 198 ~~~~A~~~g~~aa~~i~g~~-~~~dy 222 (223)
T d1ebda1 198 LAHKASYEGKVAAEAIAGHP-SAVDY 222 (223)
T ss_dssp CHHHHHHHHHHHHHHHTSCC-CCCCC
T ss_pred cHHHHHHHHHHHHHHHcCCC-CCCCC
Confidence 99999999999999999854 44554
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-34 Score=263.35 Aligned_cols=214 Identities=36% Similarity=0.629 Sum_probs=188.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+||+|||||||||++||..|++.|++|+||| ++.+||+|++.||+|++.++..+...+.......+....
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIE----------k~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~ 72 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGARAAVVE----------SHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPS 72 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCC
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCEEEEEe----------ccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccc
Confidence 5999999999999999999999999999999 788999999999999999999998877776666665543
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
. ...++|.....+....+..+.......++..+|+++.|++.+...+...+.... ..+..+.++++||+.|..|.
T Consensus 73 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~---~~~~~~~~~iatG~~p~vp~- 147 (221)
T d3grsa1 73 C-EGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG---KKYTAPHILIATGGMPSTPH- 147 (221)
T ss_dssp C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETT---EEEECSCEEECCCEEECCCC-
T ss_pred c-ccchhhhhhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeec---cccccceeEEecCccccCCC-
Confidence 2 467899999988888888888888888899999999999888777766654433 37889999999999988763
Q ss_pred CCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcC
Q 042564 183 PGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPR 262 (498)
Q Consensus 183 ~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 262 (498)
T Consensus 148 -------------------------------------------------------------------------------- 147 (221)
T d3grsa1 148 -------------------------------------------------------------------------------- 147 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCC
Q 042564 263 TTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMN 342 (498)
Q Consensus 263 ~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~ 342 (498)
|+.||++.|+|++.|++++++|+|.||+++|||+|+|||+|||++.+.
T Consensus 148 --------------------------------~r~p~~~~l~L~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~ 195 (221)
T d3grsa1 148 --------------------------------ERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL 195 (221)
T ss_dssp --------------------------------TEEESCTTTTGGGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSC
T ss_pred --------------------------------ccccCCCCcCchhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcC
Confidence 356888888899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhCCCC
Q 042564 343 LTPVALMEGTCFAKTVFGGQP 363 (498)
Q Consensus 343 ~~~~A~~~g~~aa~~i~~~~~ 363 (498)
+++.|..+|+.||+++++.++
T Consensus 196 l~~~A~~~G~~aa~~~~~~~~ 216 (221)
T d3grsa1 196 LTPVAIAAGRKLAHRLFEYKE 216 (221)
T ss_dssp CHHHHHHHHHHHHHHHHSCCT
T ss_pred cHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999998654
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=100.00 E-value=6.7e-33 Score=257.32 Aligned_cols=232 Identities=37% Similarity=0.665 Sum_probs=189.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCC-cEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGA-KVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
+++||||||||||||++||+++++.|. +|+|+|+.... .......+||+|++.||+|+|.++.++++.+.+++...||
T Consensus 1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~-~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~~~~~G 79 (240)
T d1feca1 1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH-GPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFG 79 (240)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS-BTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC-Ccccccccccccccccchhhhhcccccccccccccccccc
Confidence 367999999999999999999999885 69999953222 1122455899999999999999999999999999999999
Q ss_pred ccccc-ccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeC----CCceEEEEcCeEEEcC
Q 042564 100 WEVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQL----DGTKLSYSAKHILIAT 173 (498)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~----~g~~~~~~~d~liiAt 173 (498)
+.... ...+||..+..++...+..+...++..+.+. +++++.+.+.+.++........ .+..+.+.+|.++++|
T Consensus 80 i~~~~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~~~~~~~~~~~~~~~~~~e~i~~~~i~ia~ 159 (240)
T d1feca1 80 WELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLAT 159 (240)
T ss_dssp EECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECC
T ss_pred ccccccccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeeccccccccccccccccccccceEEEecceEEEec
Confidence 87653 3468999999999988888887777777654 6999999999888877665432 3445678999999999
Q ss_pred CCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 042564 174 GSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLE 253 (498)
Q Consensus 174 G~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~ 253 (498)
|+.|....+
T Consensus 160 G~~p~~~~~----------------------------------------------------------------------- 168 (240)
T d1feca1 160 GSWPQHLGI----------------------------------------------------------------------- 168 (240)
T ss_dssp CEEECCCCS-----------------------------------------------------------------------
T ss_pred CCceeEccc-----------------------------------------------------------------------
Confidence 988754321
Q ss_pred hCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 254 GRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 254 ~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
..|+...|.|+.++++++++|+|.||+++|||+|+|||
T Consensus 169 ------------------------------------------~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA 206 (240)
T d1feca1 169 ------------------------------------------EVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYA 206 (240)
T ss_dssp ------------------------------------------BEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred ------------------------------------------cccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEE
Confidence 00333344578889999999999999999999999999
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHHhCCCCCCC
Q 042564 334 VGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKP 366 (498)
Q Consensus 334 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 366 (498)
+|||++.+.+++.|..||+.||+++++.++.++
T Consensus 207 ~GDv~~~~~~~~~A~~eg~~aa~~~~~~~~~~~ 239 (240)
T d1feca1 207 IGDVTDRVMLTPVAINEGAAFVDTVFANKPRAT 239 (240)
T ss_dssp CGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred EEECCCCccchhhHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999998766543
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=100.00 E-value=2.6e-33 Score=256.73 Aligned_cols=215 Identities=33% Similarity=0.514 Sum_probs=183.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHH-HhhhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGE-LEDARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~-~~~~~~~g~ 100 (498)
.+|||+||||||||++||+.+++.|.+|+|||+ ...+||+|.+++|+|++.+...+..... ......+++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~---------~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~ 72 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEK---------RGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGV 72 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEEC---------SSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEe---------cCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCe
Confidence 469999999999999999999999999999995 5678999999999999998887765543 334455565
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
... ...+.+.....++......+...+...+...+++++.+.+.+.++..............+.+|++|+|||+.|
T Consensus 73 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~--- 148 (221)
T d1dxla1 73 KVS-NVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV--- 148 (221)
T ss_dssp EES-CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEE---
T ss_pred ecc-cceecHHHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCc---
Confidence 543 3456677777777777777777788888888999999999999998887766555566899999999999754
Q ss_pred CCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 181 ~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
T Consensus 149 -------------------------------------------------------------------------------- 148 (221)
T d1dxla1 149 -------------------------------------------------------------------------------- 148 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC
Q 042564 261 PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR 340 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 340 (498)
.|+.|+++.+.+++.|++++++|+|.||+++|||+|+|||+|||+++
T Consensus 149 ---------------------------------~gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g 195 (221)
T d1dxla1 149 ---------------------------------KGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPG 195 (221)
T ss_dssp ---------------------------------CCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSS
T ss_pred ---------------------------------cCccccCCCCChHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCC
Confidence 27789999888899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhCCC
Q 042564 341 MNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 341 ~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
+.+++.|..+|+.+|++|+|+.
T Consensus 196 ~~l~~~A~~~g~~aa~~i~g~~ 217 (221)
T d1dxla1 196 PMLAHKAEEDGVACVEYLAGKV 217 (221)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSC
T ss_pred cccHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999764
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.98 E-value=1.4e-31 Score=251.31 Aligned_cols=216 Identities=21% Similarity=0.283 Sum_probs=167.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
..++||+|||||||+|+.+|..+++.|.+|++||+ ...+||+|+++||+|+|.+...+.............
T Consensus 39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~---------~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~ 109 (261)
T d1mo9a1 39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDR---------WPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQY 109 (261)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEec---------cCccccccccccccchHHHHhhHHhHHHHHHhhhhc
Confidence 34689999999999999999999999999999995 567899999999999999999988777666544332
Q ss_pred -cccccccccCHHHHHHHHHHHHHHHhHHH-HHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 100 -WEVHEKIDFDWKKLLQKKTDEILRLNGIY-KRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
.........+|.................. ....... ...++.+.+.+++++.+.+ +|+ .+++|.+++|||.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~~---~g~--~i~ad~viiAtG~~ 184 (261)
T d1mo9a1 110 WFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEA---AGK--VFKAKNLILAVGAG 184 (261)
T ss_dssp TCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEE---TTE--EEEBSCEEECCCEE
T ss_pred cccccccccccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeeccccc---ccc--eEeeeeeeeccCCC
Confidence 22223456777777666554444333221 1222333 4455667788899998876 554 89999999999999
Q ss_pred CCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 177 AQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 177 p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
|+.|++++.+...+..
T Consensus 185 P~~~~i~~~~~~~~l~---------------------------------------------------------------- 200 (261)
T d1mo9a1 185 PGTLDVPEQPRSAELA---------------------------------------------------------------- 200 (261)
T ss_dssp CCCCCSTCEECCHHHH----------------------------------------------------------------
T ss_pred CCcCcccccccccccc----------------------------------------------------------------
Confidence 9999887654321111
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecc
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD 336 (498)
+..|++++++|+|.||++||||+|+|||+||
T Consensus 201 -------------------------------------------------~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GD 231 (261)
T d1mo9a1 201 -------------------------------------------------KILGLDLGPKGEVLVNEYLQTSVPNVYAVGD 231 (261)
T ss_dssp -------------------------------------------------HHHTCCBCTTSCBCCCTTSBCSSTTEEECGG
T ss_pred -------------------------------------------------cceeeeeccCCEEEeCCCcccCCCCEEEEEE
Confidence 1125677889999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 337 VTNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 337 ~~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
|++++.+++.|..||++||+||+|.+
T Consensus 232 v~~~~~l~~~A~~~G~~aa~~i~G~k 257 (261)
T d1mo9a1 232 LIGGPMEMFKARKSGCYAARNVMGEK 257 (261)
T ss_dssp GGCSSCSHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCcccHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999864
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.4e-31 Score=246.99 Aligned_cols=228 Identities=28% Similarity=0.437 Sum_probs=183.2
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhc
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARS 97 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~ 97 (498)
+|+++|||+||||||||++||.+|++.|++|+|||+ ...+||+|.+.+|+|++.++........+. ....
T Consensus 1 ~m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~---------~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~ 71 (233)
T d1v59a1 1 TINKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEK---------RGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQK 71 (233)
T ss_dssp CEEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CCCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEe---------cCCcceEeEEeeccccccccccchhHHHhhhhHhh
Confidence 467789999999999999999999999999999995 567899999999999999999888777664 5778
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 98 YGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
||+........++.....+.......+......+..+.+++++.+++.+++++...+....+. ..
T Consensus 72 ~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a~f~~~~~~~v~~~~~~---------------~~ 136 (233)
T d1v59a1 72 RGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGL---------------EG 136 (233)
T ss_dssp GTEEECSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTC---------------TT
T ss_pred cCeeEeeceecchhhhhheeeeEEEEeecceeeeeccCCeEEEEEEEEEecCCCcEEEecccc---------------cc
Confidence 898877667788888888888888888888888888899999999999888877766433221 00
Q ss_pred CCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 178 QRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 178 ~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
.... ..... .++++
T Consensus 137 ~~~~----------~~~~~----~~~i~---------------------------------------------------- 150 (233)
T d1v59a1 137 TVKE----------DHILD----VKNII---------------------------------------------------- 150 (233)
T ss_dssp CCSS----------CEEEE----EEEEE----------------------------------------------------
T ss_pred eeee----------eeecc----CCeEE----------------------------------------------------
Confidence 0000 00000 00000
Q ss_pred EEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEeccc
Q 042564 258 NLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
. ...+..+.++|++|+++.|.+++.|++++++|+|.||++++|+.|+|||+||+
T Consensus 151 ---------------------i-----~~~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~ 204 (233)
T d1v59a1 151 ---------------------V-----ATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 204 (233)
T ss_dssp ---------------------E-----CCCEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGG
T ss_pred ---------------------E-----ecccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCC
Confidence 0 11233456789999999888999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 338 TNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 338 ~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
+..+.+++.|..+|+.||++|+++.
T Consensus 205 ~~g~~l~~~a~~~G~~aa~~i~~~~ 229 (233)
T d1v59a1 205 TFGPMLAHKAEEEGIAAVEMLKTGH 229 (233)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999998754
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.97 E-value=4e-31 Score=241.82 Aligned_cols=211 Identities=31% Similarity=0.487 Sum_probs=171.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhh---cC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDAR---SY 98 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~---~~ 98 (498)
.+||+|||||||||+.||..+++.|.+|+||| ++.+||+|+++||+|++.++..+...+...+.. .+
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE----------~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~ 73 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVE----------GQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPL 73 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEEC----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEe----------cCCCCCcccccccccchhhhhhHHHHhhhhhccccccc
Confidence 46999999999999999999999999999999 678999999999999999999887766665443 33
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
++... ....+|.....+....+..........+...+++++.|+..+.+...... ++ ..+.+|++++|||++|.
T Consensus 74 g~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~---~~--~~i~a~~viiAtG~~p~ 147 (220)
T d1lvla1 74 GISVA-SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEV---DG--QRIQCEHLLLATGSSSV 147 (220)
T ss_dssp CCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEE---TT--EEEECSEEEECCCEEEC
T ss_pred eEEec-cceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcccccc---cc--eeEeeceeeEcCCCCcc
Confidence 44332 46788999888888888888888888888899999999999998887765 33 48999999999999987
Q ss_pred CCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 179 RAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 179 ~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
.++
T Consensus 148 ~lp----------------------------------------------------------------------------- 150 (220)
T d1lvla1 148 ELP----------------------------------------------------------------------------- 150 (220)
T ss_dssp CBT-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 543
Q ss_pred EEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccC
Q 042564 259 LHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~ 338 (498)
+.|......+...+++++ +|+|.||+++||++|+|||+|||+
T Consensus 151 -------------------------------------~~~~~~~~~~~~~~~~~~-~g~i~vd~~~~T~~~~I~A~GDv~ 192 (220)
T d1lvla1 151 -------------------------------------RRPRTKGFNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVA 192 (220)
T ss_dssp -------------------------------------EEECCSSSSGGGSCCCEE-TTEECCCTTCBCSSTTEEECGGGG
T ss_pred -------------------------------------ccccccCCcceeeehhhc-CCcccccchhhcCCCCEEEEEEeC
Confidence 001111111233334444 478999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCC
Q 042564 339 NRMNLTPVALMEGTCFAKTVFGGQP 363 (498)
Q Consensus 339 ~~~~~~~~A~~~g~~aa~~i~~~~~ 363 (498)
+.+.+++.|..+|+++|++|+|+..
T Consensus 193 ~~~~l~~~a~~~g~~~a~~i~G~~~ 217 (220)
T d1lvla1 193 GEPMLAHRAMAQGEMVAEIIAGKAR 217 (220)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred CcccchhhhhhhHHHHHHHHcCCCC
Confidence 9999999999999999999998653
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.97 E-value=3.8e-30 Score=238.13 Aligned_cols=229 Identities=40% Similarity=0.708 Sum_probs=180.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCC-cEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGA-KVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
++||++||||||||++||.++++.|. +|+|+|+.... ..+....+||+|+|.||+|+|.++..+++.+.++....+|.
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~-~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~~~~~G~ 80 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVH-GPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGW 80 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSS-BTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeeccc-CccccccccccccccccccchhhhhhHHHHHHHHHHHhcCC
Confidence 57999999999999999999999876 68888842221 12234578999999999999999999999999999999887
Q ss_pred cccc-ccccCHHHHHHHHHHHHHHHhHHHHHHHH-hCCcEEEEeEEEEEeCCEEEEEeCC----CceEEEEcCeEEEcCC
Q 042564 101 EVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLS-NAGVKLYEGEGKIVGPNEVEVTQLD----GTKLSYSAKHILIATG 174 (498)
Q Consensus 101 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~~~~~~i~~~~~~v~~~~----g~~~~~~~d~liiAtG 174 (498)
.+.. ....+|..++.++...+..+.......+. ..+++++.+.+.+...+........ .....++++.++++++
T Consensus 81 ~~~~~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~i~~~ 160 (238)
T d1aoga1 81 EFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASG 160 (238)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEBSCEEECCC
T ss_pred cccCccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeeccccccccccccccccccccccccccceeeecc
Confidence 6542 45679999999998888877776666664 6699999999888877776654322 2234566777777766
Q ss_pred CCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHh
Q 042564 175 SRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEG 254 (498)
Q Consensus 175 ~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~ 254 (498)
..|..+
T Consensus 161 ~~~~~~-------------------------------------------------------------------------- 166 (238)
T d1aoga1 161 SWPHMP-------------------------------------------------------------------------- 166 (238)
T ss_dssp EEECCC--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 555322
Q ss_pred CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEe
Q 042564 255 RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAV 334 (498)
Q Consensus 255 ~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~ 334 (498)
.|..|+...+.+...++.++ +|+|.||++|||++|+|||+
T Consensus 167 ---------------------------------------~~~~~~~~~l~~~~~gv~~~-~G~I~vde~~~T~~~~iyAv 206 (238)
T d1aoga1 167 ---------------------------------------NGRSPRTKDLQLQNAGVMIK-NGGVQVDEYSRTNVSNIYAI 206 (238)
T ss_dssp ---------------------------------------CCEEECCGGGCGGGTTCCEE-TTEECCCTTCBCSSTTEEEC
T ss_pred ---------------------------------------cccccceeeecccccEEEEc-CCeEEecCCeeeccCCEEEE
Confidence 23345555555566778776 68999999999999999999
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHhCCCCCC
Q 042564 335 GDVTNRMNLTPVALMEGTCFAKTVFGGQPCK 365 (498)
Q Consensus 335 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 365 (498)
|||.+.+.+++.|..+|++||++|+|+++++
T Consensus 207 GDv~~~~~l~~~A~~eg~~aa~~i~g~~~~~ 237 (238)
T d1aoga1 207 GDVTNRVMLTPVAINEAAALVDTVFGTTPRK 237 (238)
T ss_dssp GGGGTSCCCHHHHHHHHHHHHHHHHSSSCCC
T ss_pred EEecCCccchhhHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999977643
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.97 E-value=7e-30 Score=234.75 Aligned_cols=224 Identities=32% Similarity=0.498 Sum_probs=181.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhc-CCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARS-YGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~-~g~ 100 (498)
++|||+||||||||++||++|++.|++|+|||+... ......+||.|.+.+|.|++.+............... .++
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~---~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi 78 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG---KEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGI 78 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC---TTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTE
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccC---CCccccccccccccccchhhhhhhhhhhhhhhhhhhhhccc
Confidence 579999999999999999999999999999995221 1124568999999999999998887766655544333 344
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.. ....++|..+..+.......+.......+...+|+++.++..+.+...............+.++.+++|||+.|..+
T Consensus 79 ~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~ 157 (229)
T d3lada1 79 ST-GEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI 157 (229)
T ss_dssp EC-SCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred cc-CcceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCcccccc
Confidence 33 35678999999988888888888888888889999999999988888887777666677899999999999987654
Q ss_pred CCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 181 ~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
+.
T Consensus 158 ~~------------------------------------------------------------------------------ 159 (229)
T d3lada1 158 PR------------------------------------------------------------------------------ 159 (229)
T ss_dssp TE------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 20
Q ss_pred cCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC
Q 042564 261 PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR 340 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 340 (498)
.+++..+.+++.|+.++++|+|.||++++||+|+|||+|||+.+
T Consensus 160 ------------------------------------~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g 203 (229)
T d3lada1 160 ------------------------------------RPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRG 203 (229)
T ss_dssp ------------------------------------EECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSS
T ss_pred ------------------------------------cccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcch
Confidence 00001112456788899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhCCCC
Q 042564 341 MNLTPVALMEGTCFAKTVFGGQP 363 (498)
Q Consensus 341 ~~~~~~A~~~g~~aa~~i~~~~~ 363 (498)
+.+.+.|..+|+.+|++|+|++.
T Consensus 204 ~~l~~~A~~~G~~aa~~i~g~~~ 226 (229)
T d3lada1 204 AMLAHKASEEGVVVAERIAGHKA 226 (229)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999998654
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.97 E-value=5.4e-29 Score=228.99 Aligned_cols=220 Identities=30% Similarity=0.467 Sum_probs=170.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||++||..|++.|++|+|||+ ...+||+|++.||+|++.+...+...........+|..
T Consensus 5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~---------~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~ 75 (229)
T d1ojta1 5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVER---------YKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIK 75 (229)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCC
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEec---------cCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCc
Confidence 469999999999999999999999999999995 45689999999999999999999988888888888877
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
.. ...+.+..+..++......+............++++.+...+.++......... ...
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~----~~~---------------- 134 (229)
T d1ojta1 76 YP-EPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTA----GDA---------------- 134 (229)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEE----EEE----------------
T ss_pred cc-CCcccHHHHHHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCccccccccc----ccc----------------
Confidence 64 467888888888887777777777777888889998887665554433321100 000
Q ss_pred CCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEc
Q 042564 182 IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 182 i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
.
T Consensus 135 -------------------------------------------------------------------------------~ 135 (229)
T d1ojta1 135 -------------------------------------------------------------------------------Y 135 (229)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CccEEEEEEeCCeEEEEECCCeEEEcC-EEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC
Q 042564 262 RTTIKELIKSEEGVKVITDHGEEIVAD-VVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR 340 (498)
Q Consensus 262 ~~~v~~i~~~~~~~~v~~~~g~~i~~D-~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 340 (498)
. ... . ....+...++ .++.+.++.|+...+.++..|++++++|+|.||+++|||+|+|||+|||++.
T Consensus 136 ~--~~~---------~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~ 203 (229)
T d1ojta1 136 E--QAA---------P-TGEKKIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQ 203 (229)
T ss_dssp T--EEE---------E-EEEEEEEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCS
T ss_pred c--ccc---------c-cccccceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCC
Confidence 0 000 0 0000112233 3344444567776666899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhCCC
Q 042564 341 MNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 341 ~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
+.+++.|..||++||+||+|++
T Consensus 204 ~~l~~~A~~eG~~Aa~~i~G~~ 225 (229)
T d1ojta1 204 PMLAHKAVHEGHVAAENCAGHK 225 (229)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999864
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.6e-29 Score=228.25 Aligned_cols=211 Identities=35% Similarity=0.644 Sum_probs=179.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g~ 100 (498)
++|||+||||||||++||.+|++.|++|+||| ++.+||+|++++|+|++.++..++..+.++ ....+++
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE----------~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~ 70 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIE----------AKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGF 70 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEe----------ccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCc
Confidence 46999999999999999999999999999999 677999999999999999999998887764 3456666
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
... ...++|..+..++...+..+...++..+.+.+|++..+............ ++ ..+.++++++|||+.|.+|
T Consensus 71 ~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~---~~--~~~~~~~~iiatG~~p~ip 144 (217)
T d1gesa1 71 DTT-INKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NG--ETITADHILIATGGRPSHP 144 (217)
T ss_dssp EEE-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE---TT--EEEEEEEEEECCCEEECCC
T ss_pred cCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecC---CC--ceeeeeeeeeecCccccCC
Confidence 543 46789999999999988888888888899999999998877777776654 43 3789999999999988666
Q ss_pred CCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 181 ~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
++|+
T Consensus 145 ~ip~---------------------------------------------------------------------------- 148 (217)
T d1gesa1 145 REPA---------------------------------------------------------------------------- 148 (217)
T ss_dssp EEES----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 4433
Q ss_pred cCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC
Q 042564 261 PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR 340 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 340 (498)
.+.+.++..++.++++|++.+|+.++|+.|+||++||+...
T Consensus 149 ---------------------------------------~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g 189 (217)
T d1gesa1 149 ---------------------------------------NDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGA 189 (217)
T ss_dssp ---------------------------------------CTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTS
T ss_pred ---------------------------------------cCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccH
Confidence 33333455567788889999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhCCCC
Q 042564 341 MNLTPVALMEGTCFAKTVFGGQP 363 (498)
Q Consensus 341 ~~~~~~A~~~g~~aa~~i~~~~~ 363 (498)
..+++.+.++|+.+++++++.++
T Consensus 190 ~ela~~~~~~G~~v~~~~~~~~p 212 (217)
T d1gesa1 190 VELTPVAVAAGRRLSERLFNNKP 212 (217)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999998764
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.96 E-value=8.5e-32 Score=252.57 Aligned_cols=177 Identities=35% Similarity=0.564 Sum_probs=139.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
||++||||||||+.||.+|++.|++|+||| ++.+||+|+|+||+|+|.|+..+......++...||+..
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE----------~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~- 70 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVE----------KSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDT- 70 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCC-
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEe----------cCCCCCeEEeeCCcchHHHHhhhhcccchhccccccccc-
Confidence 899999999999999999999999999999 678999999999999999999999999999999999864
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCC---------ceEEEEcCeEEEcCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDG---------TKLSYSAKHILIATG 174 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g---------~~~~~~~d~liiAtG 174 (498)
.+.++|..+++++...+..+...+...+++.+|+++.|++.+++++++.+...++ ..+.+++|+++||||
T Consensus 71 -~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATG 149 (259)
T d1onfa1 71 -KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVG 149 (259)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCC
T ss_pred -hhhhhhhhHHhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecC
Confidence 4789999999999999999988888999999999999999999888877743221 234699999999999
Q ss_pred CCCC--CCCCCCC--C--cccChHHHhccccCCCeEEEEcCCHHH
Q 042564 175 SRAQ--RAPIPGQ--E--LAITSDEALSLEELPKRAVVLGGGYIA 213 (498)
Q Consensus 175 ~~p~--~p~i~g~--~--~~~~~~~~~~l~~~~~~v~ViG~G~~g 213 (498)
++|. .+.+|+. + .++++++++.++..|+ ..|+|+|.+|
T Consensus 150 s~P~~~~~~~~~~~l~~~~i~ts~~~~~~d~~~~-t~Vig~gaiG 193 (259)
T d1onfa1 150 NKPVGRSPDTENLKLEKLNVETNNNYIVVDENQR-TSVNNIYAVG 193 (259)
T ss_dssp CCBCCBCCTTTTSSCTTTTCCBSSSCEEECTTCB-CSSSSEEECS
T ss_pred CCCccccccccccccccceeeecccccccccCCc-eeEeeEEEEE
Confidence 9994 2233433 2 2567777777777664 4677877765
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=8.2e-27 Score=190.00 Aligned_cols=114 Identities=27% Similarity=0.497 Sum_probs=105.5
Q ss_pred CCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHH
Q 042564 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIM 447 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i 447 (498)
|..+|+++|++|++++||+||+||+++++ ++.+....+....++...+.+.||+|+++|+++++|||++++|++|.|+|
T Consensus 1 Y~~iP~~vft~PeiA~VGlte~eA~~~g~-~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~elI 79 (123)
T d1v59a3 1 YNNIPSVMYSHPEVAWVGKTEEQLKEAGI-DYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMI 79 (123)
T ss_dssp TTSCCEEECSSSEEEEEECCHHHHHHTTC-CEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHH
T ss_pred CCCCCEEeecCCccEEEECCHHHHHhccc-CceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHHHHH
Confidence 57899999999999999999999999854 78888888888888877788899999999999999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 448 QGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 448 ~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+.++++|++++|++||.+++|+|||++|++.+++.
T Consensus 80 ~~~alai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~ 114 (123)
T d1v59a3 80 AEAGLALEYGASAEDVARVCHAHPTLSEAFKEANM 114 (123)
T ss_dssp HHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHhcccCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999887543
|
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.94 E-value=1.5e-26 Score=188.37 Aligned_cols=115 Identities=26% Similarity=0.416 Sum_probs=106.7
Q ss_pred CCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHH
Q 042564 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIM 447 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i 447 (498)
|..+|+++|++|++|+||+||+||+++|+ ++.+...++....+++..+.+.||+|+++|+++++|+|++++|++|.|+|
T Consensus 1 Y~~iP~~vft~PeiA~vGlte~~A~~~g~-~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~elI 79 (123)
T d1dxla3 1 YDKVPGVVYTNPEVASVGKTEEQVKETGV-EYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELI 79 (123)
T ss_dssp TTSCCEEECSSSEEEEEECCHHHHHHTTC-CEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHH
T ss_pred CCCCCEEeecCCceEEEECCHHHHHHcCC-CEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHHHHH
Confidence 56799999999999999999999999865 78888889988888887788899999999999999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHH
Q 042564 448 QGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSV 483 (498)
Q Consensus 448 ~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~ 483 (498)
+.++++|++++|++||.+++++|||++|.+.++...
T Consensus 80 ~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~ 115 (123)
T d1dxla3 80 HEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMA 115 (123)
T ss_dssp HHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHhhCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999998875443
|
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.94 E-value=1.3e-26 Score=189.24 Aligned_cols=114 Identities=25% Similarity=0.428 Sum_probs=105.5
Q ss_pred CCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHH
Q 042564 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIM 447 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i 447 (498)
|..+|+++|++|++++||+||++|+++++ ++.+....+....++...+.+.||+|+++|+++++|||++++|++|.|+|
T Consensus 1 Y~~vP~~vft~PeiA~VGlte~~a~~~g~-~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~elI 79 (124)
T d3lada3 1 YDLIPAVIYTHPEIAGVGKTEQALKAEGV-AINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELV 79 (124)
T ss_dssp TTCCCEEECSSSEEEEEECCHHHHHHTTC-CEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHH
T ss_pred CCcCCeEecCcCceeEeehhHHHHhhccc-ccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHHHH
Confidence 56899999999999999999999999854 78888888888888877778899999999999999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 448 QGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 448 ~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+.++++|++++|++||.+++|+|||++|++.+++.
T Consensus 80 ~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~ 114 (124)
T d3lada3 80 QQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAAL 114 (124)
T ss_dssp HHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHhCCccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999887443
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=1.3e-26 Score=187.18 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=103.7
Q ss_pred CCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHH
Q 042564 369 RDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQ 448 (498)
Q Consensus 369 ~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~ 448 (498)
+.+|+++|++|++++||+||++|+++|+ ++.+...+|....++...+.+.||+|+++|+++++|+|+|++|++|.|+|+
T Consensus 2 r~iP~~vft~PeiA~vGlte~~a~~~g~-~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI~ 80 (118)
T d1xdia2 2 RTVAATVFTRPEIAAVGVPQSVIDAGSV-AARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELIL 80 (118)
T ss_dssp GGCEEEECSSSEEEEEESCHHHHHHTSS-CEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred CCCCEEecCCChheeehhhHHHHHhCcc-cceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHHHHHH
Confidence 4689999999999999999999999855 788888899988888777888999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 449 GIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 449 ~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
.++++|++++|++||.+++|+|||++|.+.++
T Consensus 81 ~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~a 112 (118)
T d1xdia2 81 PIAVAVQNRITVNELAQTLAVYPSLSGSITEA 112 (118)
T ss_dssp HHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHH
T ss_pred HHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999998764
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=8.7e-27 Score=187.49 Aligned_cols=113 Identities=47% Similarity=0.817 Sum_probs=103.4
Q ss_pred CCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHH
Q 042564 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEI 446 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~ 446 (498)
|..+|+++|++|++|+||+||+||+++ +..++.+....+....++...+..+||+|+++|+++++|+|++++|++|+|+
T Consensus 1 Y~~vP~~vft~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~El 80 (115)
T d3grsa3 1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEM 80 (115)
T ss_dssp CTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred CCCCCEEecCcCccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHHHH
Confidence 567999999999999999999999886 2226888888888888888788889999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 447 MQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 447 i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
|+.++++|++++|++||++++|+|||++|+|..|
T Consensus 81 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~l 114 (115)
T d3grsa3 81 LQGFAVAVKMGATKADFDNTVAIHPTSSEELVTL 114 (115)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSC
T ss_pred HHHHHHHHHcCCCHHHHhhCccCCCCHHHHHHhc
Confidence 9999999999999999999999999999988653
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.94 E-value=1.9e-26 Score=185.49 Aligned_cols=113 Identities=27% Similarity=0.461 Sum_probs=104.6
Q ss_pred CCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHH
Q 042564 370 DVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQG 449 (498)
Q Consensus 370 ~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~ 449 (498)
.+|+++|++|++++||+||+||+++|+ ++.+....+....++...+++.||+|+++++++++|||++++|++|.|+|+.
T Consensus 1 AvP~~vft~PeiA~VGlte~ea~~~g~-~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~~ 79 (115)
T d1ebda3 1 AIPAVVFSDPECASVGYFEQQAKDEGI-DVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAE 79 (115)
T ss_dssp CCCEEECSSSCEEEEECCHHHHHTTTC-CEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHH
T ss_pred CcCeEecCCCceEEEeCCHHHHhhhhh-hhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHHHHHH
Confidence 379999999999999999999999854 7888888898888887777889999999999999999999999999999999
Q ss_pred HHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHH
Q 042564 450 IAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSV 483 (498)
Q Consensus 450 ~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~ 483 (498)
++++|++++|++||.+++|+|||++|.+.++++.
T Consensus 80 ~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~ 113 (115)
T d1ebda3 80 LGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEV 113 (115)
T ss_dssp HHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999998876543
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.93 E-value=3.6e-26 Score=187.21 Aligned_cols=117 Identities=23% Similarity=0.401 Sum_probs=107.5
Q ss_pred CCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHH
Q 042564 369 RDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQ 448 (498)
Q Consensus 369 ~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~ 448 (498)
+.+|+++|++|++|+||+||++|+++++ ++.+....+....++...+.+.||+|+++|+++|+|||+|++|++|.|+|+
T Consensus 2 r~IP~~vft~PeiA~VGlte~~A~~~g~-~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI~ 80 (128)
T d1ojta3 2 RVIPGVAYTSPEVAWVGETELSAKASAR-KITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIG 80 (128)
T ss_dssp CCCCEEECSSSCEEEEECCHHHHHHHTC-CEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHH
T ss_pred CcCCEeecCCCceeeeeccHHHHHHcCC-CcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHHHHH
Confidence 4589999999999999999999999855 788888899888888877888999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHHHHH
Q 042564 449 GIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRR 486 (498)
Q Consensus 449 ~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~ 486 (498)
.++++|++++|++||.+++|+|||++|.+.++...+..
T Consensus 81 ~~~lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~ 118 (128)
T d1ojta3 81 EVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALG 118 (128)
T ss_dssp HHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999998876655543
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=7.2e-27 Score=187.97 Aligned_cols=112 Identities=46% Similarity=0.704 Sum_probs=102.7
Q ss_pred CCCCcEEEeccCCeeEeeCCHHHHHHcCCC-CEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHH
Q 042564 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKG-DILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEI 446 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~ 446 (498)
|..+|+++|++|++++||+||+||++++.+ ++.+....|....++...+.+.||+|+++|+++++|||++++|++|+|+
T Consensus 1 Y~~vP~~vft~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~El 80 (115)
T d1gesa3 1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEM 80 (115)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred CCCCCeEecCCCccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHHHH
Confidence 568999999999999999999999987433 5777788888888887778889999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHH
Q 042564 447 MQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479 (498)
Q Consensus 447 i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 479 (498)
|+.++++|++++|++||++++|+|||++|+|..
T Consensus 81 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~ 113 (115)
T d1gesa3 81 LQGFAVALKMGATKKDFDNTVAIHPTAAEEFVT 113 (115)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred HHHHHHHHHcCCcHHHHhcCcccCCcHHHHHHh
Confidence 999999999999999999999999999998764
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=5.5e-26 Score=184.91 Aligned_cols=113 Identities=24% Similarity=0.337 Sum_probs=104.7
Q ss_pred CCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHH
Q 042564 369 RDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQ 448 (498)
Q Consensus 369 ~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~ 448 (498)
..+|+++|++|++|+||+||+||+++|+ ++.+....+....++...+++.||+|+++|+++++|||++++|++|.|+|+
T Consensus 2 ~~iP~vvft~PeiA~VGlte~eA~~~g~-~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~elI~ 80 (123)
T d1lvla3 2 AAIAAVCFTDPEVVVVGKTPEQASQQGL-DCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELST 80 (123)
T ss_dssp SCCCEEECSSSEEEEEECCHHHHHHTTC-CEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHH
T ss_pred CCCCEEEeCCCccEEEECCHHHHhhcch-hhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhhHHH
Confidence 3689999999999999999999999865 788888899888888877888999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 449 GIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 449 ~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 81 ~~~lai~~~~t~~~l~~~i~~hPT~sE~~~~aa~ 114 (123)
T d1lvla3 81 AFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAAL 114 (123)
T ss_dssp HHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999876443
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.93 E-value=1.8e-25 Score=181.16 Aligned_cols=113 Identities=42% Similarity=0.648 Sum_probs=97.9
Q ss_pred CCCCcEEEeccCCeeEeeCCHHHHHHcCCC-CEEEEEEecCCCccc----cccCCceeEEEEEEECCCCeEEEEEEECCC
Q 042564 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKG-DILVFTSSFNPMRNT----ISGRQEKTVMKLVVDAETEKVLGASMCGPE 442 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~ 442 (498)
|..+|+++|++|++|+||+||+||++++.. ++.++...+....++ .......||+|+++++++++|||++++|++
T Consensus 1 Y~~vP~~vfT~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG~~ 80 (119)
T d1onfa3 1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLN 80 (119)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTT
T ss_pred CCcCCeEeccCCccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeCCC
Confidence 568999999999999999999999998533 566666666554433 233456799999999999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 443 APEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 443 a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
|+|+|+.++++|++++|++||.+++++|||++|+|..|
T Consensus 81 A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~~ 118 (119)
T d1onfa3 81 ADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTL 118 (119)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHHC
T ss_pred HHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHHhC
Confidence 99999999999999999999999999999999998764
|
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.92 E-value=1.8e-25 Score=183.02 Aligned_cols=114 Identities=42% Similarity=0.745 Sum_probs=102.6
Q ss_pred CCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCc-eeEEEEEEECCCCeEEEEEEECCChhHH
Q 042564 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQE-KTVMKLVVDAETEKVLGASMCGPEAPEI 446 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kl~~~~~~~~i~G~~~~g~~a~~~ 446 (498)
|..+|+++|++|++|+||+||+||++++ .++.++...|.++.++...... .+++|+++|+++|+|||++++|++|.|+
T Consensus 1 y~~VP~aVfT~PeiA~VGlte~eA~~~g-~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~El 79 (128)
T d1feca3 1 HTKVACAVFSIPPMGVCGYVEEDAAKKY-DQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEI 79 (128)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHC-SEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred CCCCCEEecCCCcceEEECCHHHHhhhh-cCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHHH
Confidence 5679999999999999999999999984 4788889898888887654444 5688999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 447 MQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 447 i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
|+.++++|++++|++||.+++|+|||++|+|.+++.
T Consensus 80 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~~~~ 115 (128)
T d1feca3 80 IQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRT 115 (128)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCCS
T ss_pred HHHHHHHHHcCCcHHHHhcCcCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999876543
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.89 E-value=2.2e-23 Score=174.01 Aligned_cols=115 Identities=23% Similarity=0.325 Sum_probs=96.3
Q ss_pred CCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCc----------c------ccccCCceeEEEEEEECCCCe
Q 042564 369 RDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMR----------N------TISGRQEKTVMKLVVDAETEK 432 (498)
Q Consensus 369 ~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~----------~------~~~~~~~~~~~kl~~~~~~~~ 432 (498)
.++|+++||+|++|+||+||+||+++|. ++.+....+.... + +.....+.||+|+++|+++++
T Consensus 2 ~~iP~vvfT~PeiA~VGlTe~eA~~~g~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKlv~d~~t~~ 80 (140)
T d1mo9a3 2 KNYPDFLHTHYEVSFLGMGEEEARAAGH-EIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRK 80 (140)
T ss_dssp CSCCEEEESSSEEEEEECCHHHHHHTTC-CEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCB
T ss_pred CCCCcEeccCCccEEEECCHHHHHHcCC-CeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEEEEecCCCc
Confidence 4689999999999999999999999954 7777665433211 1 122346789999999999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcC--cCCCCChhHHHHHHHHHH
Q 042564 433 VLGASMCGPEAPEIMQGIAVALKCGATKAQFDST--VGIHPSSAEEFVTMRSVT 484 (498)
Q Consensus 433 i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~--~~~~pt~~e~~~~~~~~~ 484 (498)
|+|++++|++|.|+|+.++++|++++|++||+++ +|+|||.+|.+..++...
T Consensus 81 IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~~l~a~~ 134 (140)
T d1mo9a3 81 VLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSRLRAGS 134 (140)
T ss_dssp EEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHHHHTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHHHHhcCc
Confidence 9999999999999999999999999999999986 889999999887665443
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=3.3e-23 Score=170.73 Aligned_cols=112 Identities=44% Similarity=0.684 Sum_probs=94.3
Q ss_pred CCCCcEEEeccCCeeEeeCCHHHHHHcCCC-CEEEEEEecCCCcccccc-CCceeEEEEEEE-CCCCeEEEEEEECCChh
Q 042564 368 YRDVPCAVFCIPPLSVVGLSEEQAIEQGKG-DILVFTSSFNPMRNTISG-RQEKTVMKLVVD-AETEKVLGASMCGPEAP 444 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~kl~~~-~~~~~i~G~~~~g~~a~ 444 (498)
|..+|+++|++|++|+||+||+||++++.. ++.++...+.++.+.... ....++.+++++ +++++|||+|++|++|.
T Consensus 1 Y~~VP~~vfT~PeiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~A~ 80 (133)
T d1h6va3 1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAG 80 (133)
T ss_dssp CSSCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTTHH
T ss_pred CCCCCEEecCcchheeEeCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCCHH
Confidence 568999999999999999999999987432 567777777776665433 334556666655 57899999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHH
Q 042564 445 EIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479 (498)
Q Consensus 445 ~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 479 (498)
|+|+.++++|++++|++||++++|+|||++|+|..
T Consensus 81 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~ 115 (133)
T d1h6va3 81 EVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTT 115 (133)
T ss_dssp HHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGG
T ss_pred HHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHH
Confidence 99999999999999999999999999999998743
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.3e-21 Score=158.22 Aligned_cols=115 Identities=30% Similarity=0.583 Sum_probs=109.3
Q ss_pred CCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 181 ~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
++||.++++++++++++++.|++++|||+|++|+|+|..|+++|.+|+++++.+++++.+|+++.+.+.+.++++||+++
T Consensus 1 diPG~e~~~t~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~ 80 (116)
T d1gesa2 1 DIPGVEYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLH 80 (116)
T ss_dssp CSTTGGGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEE
T ss_pred CcCCccccCCHHHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEE
Confidence 47899989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecC
Q 042564 261 PRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATG 295 (498)
Q Consensus 261 ~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G 295 (498)
+++.|+++..++++ +.+.+++|+++++|.||+|+|
T Consensus 81 ~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 81 TNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp CSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred eCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 99999999877654 789999999999999999998
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.86 E-value=4.8e-21 Score=154.57 Aligned_cols=115 Identities=26% Similarity=0.450 Sum_probs=107.1
Q ss_pred CCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 179 RAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 179 ~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
+|++||.+.++++++++++++ |++++|||||++|+|+|..|+++|.+|++++|.+++++.+|+++++.+++.++++||+
T Consensus 1 ~P~IpG~e~~~ts~~~~~l~~-p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~ 79 (117)
T d1onfa2 1 FPPVKGIENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNIN 79 (117)
T ss_dssp CCSCTTGGGCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCE
T ss_pred CcccCCHhHcCchhHHhccCC-CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCE
Confidence 488999999999999999887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccEEEEEEeCCe-EEEEECCCeEEE-cCEEEEec
Q 042564 259 LHPRTTIKELIKSEEG-VKVITDHGEEIV-ADVVLFAT 294 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~-~~v~~~~g~~i~-~D~vi~a~ 294 (498)
+++++.|++++..+++ +.+++++|+.++ +|.||+|+
T Consensus 80 i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 80 IVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp EECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred EEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 9999999999876554 889999998774 79999984
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.85 E-value=3.3e-21 Score=157.27 Aligned_cols=120 Identities=29% Similarity=0.421 Sum_probs=110.8
Q ss_pred CCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 177 AQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 177 p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
|++|.+|+.+.++|+++++++...|++++|||+|++|+|+|..|+++|.+|+++++.+++++.+|+++.+.+++.++++|
T Consensus 2 ~~lP~ip~~~~i~ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~g 81 (125)
T d1ojta2 2 TKLPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRF 81 (125)
T ss_dssp CCCSSCCCCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGE
T ss_pred CCCCCCCCCCcEEcHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcC
Confidence 67788888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEcCccEEEEEEeCCeEEEEEC--CC--eEEEcCEEEEecCC
Q 042564 257 INLHPRTTIKELIKSEEGVKVITD--HG--EEIVADVVLFATGR 296 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~--~g--~~i~~D~vi~a~G~ 296 (498)
|++++++.+.+++.++++..+.+. +| +++++|.|++|+|+
T Consensus 82 v~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 82 DNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp EEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred cccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence 999999999999988888766654 33 36999999999996
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.85 E-value=1.6e-21 Score=171.93 Aligned_cols=156 Identities=23% Similarity=0.318 Sum_probs=120.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCC-HHHHHHHH----------HHHHhCCCEEEcCccEEEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFD-DEMRAVVA----------RNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~-~~~~~~l~----------~~l~~~Gv~i~~~~~v~~i~ 269 (498)
..+|+|||+|++|+|+|..|+++|.+++++.+.+..++.++ +.+...+. ......+++++++..+.++.
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~ 82 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD 82 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEE
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccc
Confidence 45799999999999999999999988888777665554322 22222111 22345689999999999986
Q ss_pred EeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCC---cccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC------
Q 042564 270 KSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLN---LKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR------ 340 (498)
Q Consensus 270 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~---l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~------ 340 (498)
.+.. .+.+++|+++++|.+|+|+|..|+...++ ....++..+ ++|.||+++||+.|+|||+|||+..
T Consensus 83 ~~~~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~--~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g 158 (183)
T d1d7ya1 83 PQAH--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACD--DGIFVDAYGRTTCPDVYALGDVTRQRNPLSG 158 (183)
T ss_dssp TTTT--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBS--SSEECCTTCBCSSTTEEECGGGEEEECTTTC
T ss_pred cccc--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeC--CcEEeccceeccccccchhhhhhccceeeCC
Confidence 5443 56789999999999999999999886543 233455543 5799999999999999999999852
Q ss_pred ----CCChHHHHHHHHHHHHHHhC
Q 042564 341 ----MNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 341 ----~~~~~~A~~~g~~aa~~i~~ 360 (498)
.+++..|.+||+.+|+||+.
T Consensus 159 ~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 159 RFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp SEEECCCHHHHHHHHHHHHHHHHC
T ss_pred ceechhHHHHHHHHHHHHHHHHcC
Confidence 25788999999999999974
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.84 E-value=3.7e-21 Score=171.83 Aligned_cols=160 Identities=23% Similarity=0.272 Sum_probs=122.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCCCCCCCH--------------HHHHHHHHHHHhCCCEEEcCccEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELPLRGFDD--------------EMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~l~~~~~--------------~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
+|+|||+|++|+|+|..|++++ .+|+++++.+.+ +..+. .+.....+.++++||++++++.|.
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~ 80 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI-SFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT 80 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS-SBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc-cccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence 6999999999999999999874 579999987653 11111 122223467888999999999999
Q ss_pred EEEEeCCeEEEEE-CCCe--EEEcCEEEEecCCCcCCCCCC-----cccCCceeCCCCCeEcCCCCCCCCCCeEEecccC
Q 042564 267 ELIKSEEGVKVIT-DHGE--EIVADVVLFATGRAPNTKRLN-----LKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338 (498)
Q Consensus 267 ~i~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~~~l~-----l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~ 338 (498)
+++.+++.+.+.. .+|+ .+++|.+|+|+|..|+..... .-..++.++++|+|.||+++||++|+|||+|||+
T Consensus 81 ~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD~a 160 (198)
T d1nhpa1 81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDAT 160 (198)
T ss_dssp EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGGS
T ss_pred eEeeccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEeccee
Confidence 9987777766653 4444 578999999999876543110 1123677888999999999999999999999998
Q ss_pred CC----------CCChHHHHHHHHHHHHHHhCCCC
Q 042564 339 NR----------MNLTPVALMEGTCFAKTVFGGQP 363 (498)
Q Consensus 339 ~~----------~~~~~~A~~~g~~aa~~i~~~~~ 363 (498)
.. ..++..|.+||+.+|+||.+...
T Consensus 161 ~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~~ 195 (198)
T d1nhpa1 161 LIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK 195 (198)
T ss_dssp CEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCC
T ss_pred ecccccCCCcccccHHHHHHHHHHHHHHhhCCCCC
Confidence 53 35688899999999999986543
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.83 E-value=2.8e-20 Score=150.71 Aligned_cols=113 Identities=43% Similarity=0.780 Sum_probs=104.4
Q ss_pred CCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHC---CCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 184 GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGM---GSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 184 g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
|.+.++|+++++.+++.|++++|||||++|+|+|..|.++ |.+|+++++.+++++.+|+++.+.+++.++++||+++
T Consensus 1 G~e~~~ts~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~ 80 (117)
T d1feca2 1 GDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVR 80 (117)
T ss_dssp TGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEE
T ss_pred CcEEEEchHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEE
Confidence 4567889999999999999999999999999999987765 8899999999999999999999999999999999999
Q ss_pred cCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCC
Q 042564 261 PRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 261 ~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
+++.|++|...+++ ..+++++|++++||.||+|+|+
T Consensus 81 ~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 81 THENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp ETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred cCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence 99999999876554 6789999999999999999996
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.83 E-value=8.5e-20 Score=147.86 Aligned_cols=114 Identities=32% Similarity=0.536 Sum_probs=105.1
Q ss_pred CCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEE
Q 042564 180 APIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 180 p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 259 (498)
|.+|+.+.++++++++.+.+.|++++|||||++|+|+|..|.++|.+||++++.+++++.+|+++.+.+.+.++++||++
T Consensus 1 P~~~~~~~i~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i 80 (117)
T d1ebda2 1 PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEV 80 (117)
T ss_dssp TTBCCCSSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CcCCCCCCEEChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEE
Confidence 66788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCccEEEEEEeCCeEEEEEC-CC--eEEEcCEEEEe
Q 042564 260 HPRTTIKELIKSEEGVKVITD-HG--EEIVADVVLFA 293 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~~~v~~~-~g--~~i~~D~vi~a 293 (498)
++++.|++++..++++.+.+. +| +++++|.|+++
T Consensus 81 ~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 81 VTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp EESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred EcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 999999999988888766653 44 46999999974
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.83 E-value=2.5e-20 Score=161.62 Aligned_cols=149 Identities=19% Similarity=0.302 Sum_probs=116.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHH-------------HHHHHHhCCCEEEcCccEEEEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAV-------------VARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~-------------l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
+|+|||+|++|+|+|..|++ +.+|+++++.+.+.. .++.+.+. ..+.+++.++++++++.+..+.
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 79 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY-SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLID 79 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC-CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEE
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc-cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccc
Confidence 79999999999999999975 679999998764321 11222221 2456777899999999999885
Q ss_pred EeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC----CCChH
Q 042564 270 KSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR----MNLTP 345 (498)
Q Consensus 270 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~----~~~~~ 345 (498)
.... +.+.+++++++|.+++|+|..|+. + ++..|++.+. .|.||+++||+.|+|||+|||+.. ++.++
T Consensus 80 ~~~~---~~~~~~~~i~~D~li~a~G~~~~~-~--~~~~gl~~~~--~i~v~~~~~t~~~~i~aiGD~~~~~~~~~~~~~ 151 (167)
T d1xhca1 80 RGRK---VVITEKGEVPYDTLVLATGAPNVD-L--ARRSGIHTGR--GILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAK 151 (167)
T ss_dssp TTTT---EEEESSCEEECSEEEECCCEECCH-H--HHHTTCCBSS--SEECCTTSBCSSTTEEECGGGEEBTTBCCCSHH
T ss_pred cccc---cccccccccccceeEEEEEecCCc-h--hhhcCceeCC--ceeeccccEecCCCeEEeeecccCCCeEEChHH
Confidence 4332 445566789999999999997753 3 4677887764 599999999999999999999864 45778
Q ss_pred HHHHHHHHHHHHHhCC
Q 042564 346 VALMEGTCFAKTVFGG 361 (498)
Q Consensus 346 ~A~~~g~~aa~~i~~~ 361 (498)
.|++||+.+|+||+|.
T Consensus 152 ~a~~~a~~~a~~i~Ge 167 (167)
T d1xhca1 152 AAMEQARVLADILKGE 167 (167)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999999873
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.82 E-value=9.3e-20 Score=147.38 Aligned_cols=113 Identities=35% Similarity=0.628 Sum_probs=104.6
Q ss_pred CCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCC---CcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 182 IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMG---STVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 182 i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g---~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
+||.++++|+++++.+.+.|++++|||||++|+|+|..|.+++ .+|+++++.+++++.+|+++++.+.+.++++||+
T Consensus 1 iPG~~~~~t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~ 80 (117)
T d1aoga2 1 IPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQ 80 (117)
T ss_dssp CTTGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred CcCccceEcHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcE
Confidence 5888889999999999999999999999999999999888765 4699999999999999999999999999999999
Q ss_pred EEcCccEEEEEEeCC-eEEEEECCCeEEEcCEEEEec
Q 042564 259 LHPRTTIKELIKSEE-GVKVITDHGEEIVADVVLFAT 294 (498)
Q Consensus 259 i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~D~vi~a~ 294 (498)
+++++.+++++..++ ...+++++|++++||.||+|+
T Consensus 81 v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 81 ILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp EEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred EEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 999999999987655 478999999999999999984
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.1e-19 Score=148.76 Aligned_cols=115 Identities=39% Similarity=0.624 Sum_probs=104.8
Q ss_pred CCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 181 ~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
.+||.++++|+++++.++..|++++|||+|++|+|+|..|+++|.+|++++|++++++.+|+++.+.+.+.++++||+++
T Consensus 2 ~IPG~e~~~ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~ 81 (125)
T d3grsa2 2 QIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVL 81 (125)
T ss_dssp TSTTGGGSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCccccCCHHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEEEeCCeEEEEE---CCCe------EEEcCEEEEecC
Q 042564 261 PRTTIKELIKSEEGVKVIT---DHGE------EIVADVVLFATG 295 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~---~~g~------~i~~D~vi~a~G 295 (498)
+++.++++...++++.+.. ..|+ .+++|.|++|+|
T Consensus 82 ~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 82 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp TTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred eCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 9999999998888755443 2332 477999999998
|
| >d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.82 E-value=1.6e-20 Score=153.40 Aligned_cols=106 Identities=22% Similarity=0.286 Sum_probs=86.5
Q ss_pred cEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECC-ChhHHHHHH
Q 042564 372 PCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGP-EAPEIMQGI 450 (498)
Q Consensus 372 ~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~-~a~~~i~~~ 450 (498)
...+| +|++++||+||+||++.|+ ++.+.......... +....+++|+|+++|+++++|||+|++|+ +|.|+|+.+
T Consensus 7 ~~~vf-d~eiasvGlte~eA~~~g~-~~~~~~~~~~~~~~-~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~ 83 (126)
T d1nhpa3 7 GLAVF-DYKFASTGINEVMAQKLGK-ETKAVTVVEDYLMD-FNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAI 83 (126)
T ss_dssp EEEET-TEEEEEEECCHHHHHHHTC-CCEEEEEEEESSCT-TCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHH
T ss_pred EEeEc-CccEEEecccHHHHHHCCC-CEEEEEEecCcchh-hcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHHHH
Confidence 34677 8999999999999999876 45555444332222 23356689999999999999999999996 599999999
Q ss_pred HHHHHCCCCHHHHhcCcCC-CCChhHHHHHH
Q 042564 451 AVALKCGATKAQFDSTVGI-HPSSAEEFVTM 480 (498)
Q Consensus 451 ~~~i~~~~~~~~l~~~~~~-~pt~~e~~~~~ 480 (498)
+++|++++|++||.++.++ |||++|.+..+
T Consensus 84 ~~ai~~~~t~~dL~~~~~~yhPt~se~~~~l 114 (126)
T d1nhpa3 84 SLAIQAKMTIEDLAYADFFFQPAFDKPWNII 114 (126)
T ss_dssp HHHHHTTCBHHHHHTCCCCCCTTTCCSSCHH
T ss_pred HHHHHcCCCHHHHhcCcccCCCCCchhHHHH
Confidence 9999999999999999886 79999975433
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.82 E-value=1.4e-19 Score=146.65 Aligned_cols=110 Identities=21% Similarity=0.371 Sum_probs=103.0
Q ss_pred CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccE
Q 042564 186 ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTI 265 (498)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 265 (498)
+.+++++++++++..|++++|||+|++|+|+|+.|+++|++|+++++.+++++.+|+++.+.+++.++++||++++++.+
T Consensus 7 ~~v~~s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v 86 (119)
T d3lada2 7 DVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARV 86 (119)
T ss_dssp SSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred CEEEchhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEE
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeEEEEECCC---eEEEcCEEEEecC
Q 042564 266 KELIKSEEGVKVITDHG---EEIVADVVLFATG 295 (498)
Q Consensus 266 ~~i~~~~~~~~v~~~~g---~~i~~D~vi~a~G 295 (498)
++++.+++++.+++.++ +++.||.|++|+|
T Consensus 87 ~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 87 TGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred EEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 99999888877776544 4799999999998
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=6.1e-20 Score=161.88 Aligned_cols=157 Identities=23% Similarity=0.319 Sum_probs=120.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-C--------------CHHHHHHHHHHHHhCCCEEEcCccE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-F--------------DDEMRAVVARNLEGRGINLHPRTTI 265 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~--------------~~~~~~~l~~~l~~~Gv~i~~~~~v 265 (498)
.++|+|||||++|+|+|..|+++|.+|+++.+.+..... . ...............+..+..+..+
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 82 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeecccee
Confidence 579999999999999999999999998888776643221 1 1111112234456677888888777
Q ss_pred EEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCc-ccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC----
Q 042564 266 KELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNL-KAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR---- 340 (498)
Q Consensus 266 ~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l-~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~---- 340 (498)
..+..+ ...+...++.++++|.+++++|.+|+.+.+.+ +..++.. +|++.||+++||++|+|||+|||+..
T Consensus 83 ~~~~~~--~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~--~~~i~Vd~~~~ts~~~vya~GD~~~~~~~~ 158 (185)
T d1q1ra1 83 TAINRD--RQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQV--DNGIVINEHMQTSDPLIMAVGDCARFHSQL 158 (185)
T ss_dssp EEEETT--TTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCB--SSSEECCTTSBCSSTTEEECGGGEEEEETT
T ss_pred eeeccc--ccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccc--cCccccCCccccchhhhhcchhhhcccccc
Confidence 777443 34577888889999999999999887655433 4455554 46899999999999999999999863
Q ss_pred ------CCChHHHHHHHHHHHHHHhCC
Q 042564 341 ------MNLTPVALMEGTCFAKTVFGG 361 (498)
Q Consensus 341 ------~~~~~~A~~~g~~aa~~i~~~ 361 (498)
.++++.|.+||+.+|+||+|+
T Consensus 159 ~~~~~~~~~a~~A~~~g~~aa~~i~G~ 185 (185)
T d1q1ra1 159 YDRWVRIESVPNALEQARKIAAILCGK 185 (185)
T ss_dssp TTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred CCcccchhhHHHHHHHHHHHHHHccCC
Confidence 358899999999999999874
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.3e-20 Score=168.32 Aligned_cols=157 Identities=20% Similarity=0.291 Sum_probs=120.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--cEEEEeeCCCCCCCCCHH------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGS--TVDLLFRKELPLRGFDDE------------------------------------ 243 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv~~~~~~l~~~~~~------------------------------------ 243 (498)
.+++|||+|++|+++|..|++.+. +|+++.+.+.+ +..-+.
T Consensus 5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~-py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213)
T d1m6ia1 5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL-PYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF 83 (213)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC-CBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC-CccccccceecccccCchhhhhhhhhhcccchhhhhcCChhh
Confidence 367999999999999999988765 58998765432 100000
Q ss_pred -HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeC-CCCCeEcC
Q 042564 244 -MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVD-QTGAVKVD 321 (498)
Q Consensus 244 -~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~-~~g~i~vd 321 (498)
........+++.||+++++++|++|+.+++ .|++++|+++++|.+|+|+|..|+...+ ....+++++ ..|.|.||
T Consensus 84 ~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~~~~~~~l-~~~~gl~~~~~~~~i~vd 160 (213)
T d1m6ia1 84 YVSAQDLPHIENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTEPNVEL-AKTGGLEIDSDFGGFRVN 160 (213)
T ss_dssp SBCTTTTTTSTTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEEEECCTT-HHHHTCCBCTTTCSEECC
T ss_pred hhhhhhHHHHHHCCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeeeecchhhh-hhccchhhhhhhhhhhhh
Confidence 001112335678999999999999966554 5788999999999999999987666443 456778774 45789999
Q ss_pred CCCCCCCCCeEEecccCCC---------CCChHHHHHHHHHHHHHHhCCCC
Q 042564 322 ENSRTNVPSIWAVGDVTNR---------MNLTPVALMEGTCFAKTVFGGQP 363 (498)
Q Consensus 322 ~~~~t~~~~iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~ 363 (498)
++|||+ |+|||+|||+.. ..++..|..||+++|+||+|...
T Consensus 161 ~~l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~~ 210 (213)
T d1m6ia1 161 AELQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK 210 (213)
T ss_dssp TTCEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCC
T ss_pred HhcCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCCC
Confidence 999998 999999999752 56788999999999999998653
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.1e-18 Score=141.94 Aligned_cols=108 Identities=28% Similarity=0.498 Sum_probs=97.6
Q ss_pred CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccE
Q 042564 186 ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTI 265 (498)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 265 (498)
+.++++++++.+...|++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++.+.+++.++++||++++++.|
T Consensus 8 ~~v~ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v 87 (122)
T d1v59a2 8 EKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKV 87 (122)
T ss_dssp SSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred CEEEehHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEE
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCe--EEEEECCC-----eEEEcCEEEEe
Q 042564 266 KELIKSEEG--VKVITDHG-----EEIVADVVLFA 293 (498)
Q Consensus 266 ~~i~~~~~~--~~v~~~~g-----~~i~~D~vi~a 293 (498)
++++..+++ +.+++.++ +++++|.|++|
T Consensus 88 ~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 88 ISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred EEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 999887665 44454432 37999999986
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=7.3e-19 Score=141.64 Aligned_cols=111 Identities=33% Similarity=0.482 Sum_probs=97.5
Q ss_pred CCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcC
Q 042564 183 PGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPR 262 (498)
Q Consensus 183 ~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 262 (498)
|....++++++++.+...|++++|||||++|+|+|..|+++|++||++++.+++++.+|+++.+.+++.++++||+++++
T Consensus 3 p~g~~~~~s~~~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~ 82 (115)
T d1lvla2 3 PLGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLG 82 (115)
T ss_dssp CCBTTEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETT
T ss_pred CCCCcEECChHHhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcC
Confidence 33446889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeCCeEEEEECC--CeEEEcCEEEEecC
Q 042564 263 TTIKELIKSEEGVKVITDH--GEEIVADVVLFATG 295 (498)
Q Consensus 263 ~~v~~i~~~~~~~~v~~~~--g~~i~~D~vi~a~G 295 (498)
+.|+++. ++...+...+ ++++++|.|++|+|
T Consensus 83 ~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 83 HSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp CEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred cEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 9999984 3333333333 35799999999998
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=2.2e-18 Score=139.90 Aligned_cols=112 Identities=33% Similarity=0.567 Sum_probs=96.6
Q ss_pred CCC-CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEc
Q 042564 183 PGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 183 ~g~-~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
||. ++.+|+++++++.+.|++++|||+|++|+|+|..|+++|++|+++.+. ++++.+|+++++.+.+.|+++||++++
T Consensus 1 Pg~~e~~~tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~~D~~~~~~l~~~l~~~Gv~i~~ 79 (122)
T d1h6va2 1 PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIR 79 (122)
T ss_dssp TTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTTSCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCccceeEcchHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhccCCHHHHHHHHHHHHHCCCEEEE
Confidence 455 467899999999999999999999999999999999999999999875 688999999999999999999999999
Q ss_pred CccEEEEEEeCC----eEEEEECC---Ce--EEEcCEEEEecC
Q 042564 262 RTTIKELIKSEE----GVKVITDH---GE--EIVADVVLFATG 295 (498)
Q Consensus 262 ~~~v~~i~~~~~----~~~v~~~~---g~--~i~~D~vi~a~G 295 (498)
++.|++++..++ .+.+.+.. ++ .+++|.|++|+|
T Consensus 80 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 80 QFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp SCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred CCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 999999976433 24555432 22 467999999998
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.76 E-value=2.7e-18 Score=139.81 Aligned_cols=109 Identities=35% Similarity=0.571 Sum_probs=98.3
Q ss_pred CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccE
Q 042564 186 ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTI 265 (498)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 265 (498)
..++|+++++.+.+.|++++|||+|++|+|+|..|+++|.+||+++|++++++.+|+++.+.+.+.++++||++++++.+
T Consensus 10 ~~v~ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v 89 (123)
T d1dxla2 10 KKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKV 89 (123)
T ss_dssp SSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred CeEEeHHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCce
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeEEEE--EC-CC--eEEEcCEEEEec
Q 042564 266 KELIKSEEGVKVI--TD-HG--EEIVADVVLFAT 294 (498)
Q Consensus 266 ~~i~~~~~~~~v~--~~-~g--~~i~~D~vi~a~ 294 (498)
.+++.+++++.+. .. +| +.++||.|++|.
T Consensus 90 ~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 90 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp EEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred EEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 9998877775554 33 33 358999999874
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.76 E-value=2.8e-18 Score=138.96 Aligned_cols=113 Identities=24% Similarity=0.389 Sum_probs=97.5
Q ss_pred CCCCCCCCc----ccChHHHhcccc---CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHH
Q 042564 179 RAPIPGQEL----AITSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVAR 250 (498)
Q Consensus 179 ~p~i~g~~~----~~~~~~~~~l~~---~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~ 250 (498)
+|++||.+. +.+.+|+..+.+ .+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++++.+.+
T Consensus 1 iP~ipG~~~~v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~ 80 (121)
T d1d7ya2 1 LPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR 80 (121)
T ss_dssp CGGGTTCSSCEEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred CccCCCCCCCEEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHH
Confidence 477888753 246666665433 3689999999999999999999999999999999999975 89999999999
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G 295 (498)
.++++||++++++.|+++.. + .++++||++++||.||+|+|
T Consensus 81 ~l~~~GV~i~~~~~v~~~~~--~--~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 81 YHAAQGVDLRFERSVTGSVD--G--VVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp HHHTTTCEEEESCCEEEEET--T--EEEETTSCEEECSEEEECSC
T ss_pred HHHHCCcEEEeCCEEEEEeC--C--EEEECCCCEEECCEEEEeeC
Confidence 99999999999999998753 2 47789999999999999998
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.74 E-value=1.5e-18 Score=141.30 Aligned_cols=115 Identities=28% Similarity=0.455 Sum_probs=97.4
Q ss_pred CCCCCCCCCCCcccChHHHhc---cc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHH
Q 042564 176 RAQRAPIPGQELAITSDEALS---LE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA 249 (498)
Q Consensus 176 ~p~~p~i~g~~~~~~~~~~~~---l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~ 249 (498)
+|+.|++||.+++++.+++.+ +. ..+++++|||||++|+|+|..|+++|.+|+++++.+.+++ +|+++.+.+.
T Consensus 1 R~r~p~ipG~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~-~d~~~~~~~~ 79 (122)
T d1xhca2 1 RAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIK 79 (122)
T ss_dssp EECCCCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHH
T ss_pred CCCCcCCCCccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC-CCHHHHHHHH
Confidence 478899999987766544433 22 2358999999999999999999999999999999998876 9999999999
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
+.|+++||++++++.+.++.. ++ + +.+++.+++|.||+|+|.
T Consensus 80 ~~l~~~GV~~~~~~~v~~~~~--~~--v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 80 DMLEETGVKFFLNSELLEANE--EG--V-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHTTEEEECSCCEEEECS--SE--E-EETTEEEECSCEEEECCE
T ss_pred HHHHHCCcEEEeCCEEEEEeC--CE--E-EeCCCEEECCEEEEEEEe
Confidence 999999999999999998843 32 2 457778999999999995
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=5.7e-18 Score=139.78 Aligned_cols=108 Identities=24% Similarity=0.307 Sum_probs=94.5
Q ss_pred ccChHHHhccc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHHHHHhCCCEEEcCc
Q 042564 188 AITSDEALSLE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRT 263 (498)
Q Consensus 188 ~~~~~~~~~l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~ 263 (498)
+.+.+|...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+++.++++||++++++
T Consensus 19 lr~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~ 98 (133)
T d1q1ra2 19 LRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGT 98 (133)
T ss_dssp SSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSC
T ss_pred eCCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCC
Confidence 45566655433 34789999999999999999999999999999999999986 799999999999999999999999
Q ss_pred cEEEEEEeCCe---EEEEECCCeEEEcCEEEEecC
Q 042564 264 TIKELIKSEEG---VKVITDHGEEIVADVVLFATG 295 (498)
Q Consensus 264 ~v~~i~~~~~~---~~v~~~~g~~i~~D~vi~a~G 295 (498)
.|++++...+. ..+.+++|+++++|.||+|+|
T Consensus 99 ~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 99 QVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred eEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 99999875432 457899999999999999998
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.68 E-value=3.3e-19 Score=163.24 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=107.2
Q ss_pred CCccccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh
Q 042564 14 PNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE 93 (498)
Q Consensus 14 ~~~~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~ 93 (498)
|+..++....++|+||||||||++||..|++.|++|+|+|+ ...+||++.+..++|..
T Consensus 40 p~~~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~---------~~~~GG~~~~~~~~~~~------------- 97 (233)
T d1djqa3 40 PEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDT---------AEKIGGHLNQVAALPGL------------- 97 (233)
T ss_dssp SSCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS---------SSSTTTTHHHHTTSTTC-------------
T ss_pred CCccCcccCCceEEEEcccHHHHHHHHHHHHhccceeeEee---------ccccCCcccccccccee-------------
Confidence 44444555668999999999999999999999999999995 56688887654444310
Q ss_pred hhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcC
Q 042564 94 DARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIAT 173 (498)
Q Consensus 94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAt 173 (498)
.++.....+....+ ... ...++.... +.....+...+ ..++.||++|+||
T Consensus 98 --------------~~~~~~~~~~~~~~-------~~~-~~~~~~~~~------~~~~~~~~~~~--~~~~~~d~vviAt 147 (233)
T d1djqa3 98 --------------GEWSYHRDYRETQI-------TKL-LKKNKESQL------ALGQKPMTADD--VLQYGADKVIIAT 147 (233)
T ss_dssp --------------GGGGHHHHHHHHHH-------HHH-HTTCTTCEE------ECSCCCCCHHH--HHTSCCSEEEECC
T ss_pred --------------ecccccchhHHHHH-------HHH-hhcceeeee------ecccccccchh--hhhhccceeeecc
Confidence 11111111111111 111 111222111 11111111111 1256899999999
Q ss_pred CCCCCCCCCCCC--CcccCh---HHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC
Q 042564 174 GSRAQRAPIPGQ--ELAITS---DEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR 238 (498)
Q Consensus 174 G~~p~~p~i~g~--~~~~~~---~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~ 238 (498)
|+.+..|.+++. +...+. ..........++++|+|+|++|+|+|..|.+.|.+|+++++.+.++.
T Consensus 148 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~ 217 (233)
T d1djqa3 148 GASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW 217 (233)
T ss_dssp CEECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred CCCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence 998876654332 211111 11112233468999999999999999999999999999999887653
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.8e-16 Score=129.56 Aligned_cols=108 Identities=19% Similarity=0.322 Sum_probs=96.7
Q ss_pred cChHHHhcccc---CCCeEEEEcCCHHHHHHHHHHH----HCCCcEEEEeeCCCCCCC-CCHHHHHHHHHHHHhCCCEEE
Q 042564 189 ITSDEALSLEE---LPKRAVVLGGGYIAVEFASIWR----GMGSTVDLLFRKELPLRG-FDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 189 ~~~~~~~~l~~---~~~~v~ViG~G~~g~e~a~~l~----~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
.+.+++.++.+ .+++++|||||++|+|+|..|. +.|.+|+++++.+++++. +|+++++.+.+.++++||+++
T Consensus 22 r~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~ 101 (137)
T d1m6ia2 22 RKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM 101 (137)
T ss_dssp CSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred cCHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 46666665443 3789999999999999999985 468999999999999975 899999999999999999999
Q ss_pred cCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 261 PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
+++.|.++..+++.+.+++++|+++++|.||+|+|.
T Consensus 102 ~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 102 PNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp CSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred eCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence 999999999988889999999999999999999984
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.66 E-value=4e-16 Score=137.87 Aligned_cols=153 Identities=27% Similarity=0.312 Sum_probs=122.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC----------------CCC-----CCHHHHHHHHHHHHhCCCEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP----------------LRG-----FDDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~----------------l~~-----~~~~~~~~l~~~l~~~Gv~i 259 (498)
.++|+|||||++|+++|..+++.|.+|.++++.... ... ..+++...+.+.+++.|+++
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i 84 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 84 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence 468999999999999999999999999999865421 011 24677788888888889999
Q ss_pred EcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC-----CcCCCCCCcccCCceeCCCCCeEcCC-CCCCCCCCeEE
Q 042564 260 HPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR-----APNTKRLNLKAVGVEVDQTGAVKVDE-NSRTNVPSIWA 333 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~-----~p~~~~l~l~~~gi~~~~~g~i~vd~-~~~t~~~~iya 333 (498)
..+ .|.++...++...+... .....+|.+++++|. .|++.++ ..+++++++|+|.+|+ .++|++|+|||
T Consensus 85 ~~~-~V~~~~~~~~~~~v~~~-~~~~~~~~~~~a~g~~~~g~~p~~~~~---~~~veld~~G~i~~~~~~~~Ts~~GV~a 159 (192)
T d1vdca1 85 FTE-TVTKVDFSSKPFKLFTD-SKAILADAVILAIGAVAKGHEPATKFL---DGGVELDSDGYVVTKPGTTQTSVPGVFA 159 (192)
T ss_dssp ECC-CCCEEECSSSSEEEECS-SEEEEEEEEEECCCEEECCEEESCGGG---TTSSCBCTTSCBCCCTTSCBCSSTTEEE
T ss_pred eee-eEEecccccCcEEeccc-ceeeeeeeEEEEeeeeecccCchHHHh---cCceeecCCCeEEeCCCceEecCCCEEE
Confidence 876 68888766665666544 446889999999984 5777753 3478999999999996 78999999999
Q ss_pred ecccCCCC-CChHHHHHHHHHHHHHH
Q 042564 334 VGDVTNRM-NLTPVALMEGTCFAKTV 358 (498)
Q Consensus 334 ~GD~~~~~-~~~~~A~~~g~~aa~~i 358 (498)
+|||.+.+ .....|..+|..||..+
T Consensus 160 ~GDv~~~~~r~~v~A~g~G~~aA~~~ 185 (192)
T d1vdca1 160 AGDVQDKKYRQAITAAGTGCMAALDA 185 (192)
T ss_dssp CGGGGCSSCCCHHHHHHHHHHHHHHH
T ss_pred eeecCCcccceEEEEEechHHHHHHH
Confidence 99999864 46788999999998876
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.65 E-value=9.5e-16 Score=124.47 Aligned_cols=94 Identities=24% Similarity=0.380 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVI 278 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~ 278 (498)
.+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++.+.+.+.++++||++++++.++++..++ .+...
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~v 107 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDG-RVQKV 107 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSS-BCCEE
T ss_pred CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCC-CEEEE
Confidence 4689999999999999999999999999999999999876 899999999999999999999999999997654 33344
Q ss_pred ECCCeEEEcCEEEEec
Q 042564 279 TDHGEEIVADVVLFAT 294 (498)
Q Consensus 279 ~~~g~~i~~D~vi~a~ 294 (498)
+.+|++++||.||+|+
T Consensus 108 ~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 108 VTDKNAYDADLVVVAV 123 (123)
T ss_dssp EESSCEEECSEEEECS
T ss_pred EeCCCEEECCEEEEEC
Confidence 6788899999999984
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.62 E-value=2.1e-15 Score=122.48 Aligned_cols=95 Identities=24% Similarity=0.377 Sum_probs=85.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE--EE-
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV--KV- 277 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~--~v- 277 (498)
+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+|+++.+.+++.++++||++++++.+.+++.++++. .+
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~ 101 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVV 101 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEE
Confidence 589999999999999999999999999999999999999999999999999999999999999999998876541 22
Q ss_pred --EECCCeEEEcCEEEEecC
Q 042564 278 --ITDHGEEIVADVVLFATG 295 (498)
Q Consensus 278 --~~~~g~~i~~D~vi~a~G 295 (498)
...++++++||.||+|+|
T Consensus 102 ~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 102 AMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEETTEEEEEECSCEEECCC
T ss_pred EEeCCCCEEEEcCEEEEEEC
Confidence 223456899999999998
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.62 E-value=2.1e-15 Score=131.86 Aligned_cols=155 Identities=20% Similarity=0.156 Sum_probs=110.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCCCCCCCHHHHHH----------HHHHHHhCCCEEEcCccEEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELPLRGFDDEMRAV----------VARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~l~~~~~~~~~~----------l~~~l~~~Gv~i~~~~~v~~i 268 (498)
.|+|+|||+|++|+|+|..|++.+ .+|+++++.+.++.......... ....+...++.+..+ .+..+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 80 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHD-SATGI 80 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECC-CEEEC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeee-eeEee
Confidence 589999999999999999999987 47999998876544322221111 123345567777665 33333
Q ss_pred EEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccC------CceeCCCCCeEcCCC-C-CCCCCCeEEecccCCC
Q 042564 269 IKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAV------GVEVDQTGAVKVDEN-S-RTNVPSIWAVGDVTNR 340 (498)
Q Consensus 269 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~------gi~~~~~g~i~vd~~-~-~t~~~~iya~GD~~~~ 340 (498)
+.....+.+.+++.+++|.+|+|+|.+|+...+..... ++..+ .+++.++.. + .++.++||++||++..
T Consensus 81 --~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~iGd~~~~ 157 (186)
T d1fcda1 81 --DPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTND-AGWCPVDIKTFESSIHKGIHVIGDASIA 157 (186)
T ss_dssp --CTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCT-TSSEEBCSSSCBBSSSTTEEECTTSEEC
T ss_pred --eeccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccc-cccccceeeeeecccccCceEecccccc
Confidence 22234567788999999999999999999987642221 33333 345666653 3 4699999999999865
Q ss_pred ---CCChHHHHHHHHHHHHHHh
Q 042564 341 ---MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 341 ---~~~~~~A~~~g~~aa~~i~ 359 (498)
+..+..|.+||+++|+||.
T Consensus 158 ~~~p~~~~~A~~q~~~~A~ni~ 179 (186)
T d1fcda1 158 NPMPKSGYSANSQGKVAAAAVV 179 (186)
T ss_dssp TTCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCchHhHHHHHHHHHHHHHH
Confidence 4568899999999999986
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.60 E-value=3.6e-16 Score=133.24 Aligned_cols=136 Identities=14% Similarity=0.112 Sum_probs=109.6
Q ss_pred cCCCCCCCC-CCCCCC----cccChHHHhccccCCCeEEEE---cCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHH
Q 042564 172 ATGSRAQRA-PIPGQE----LAITSDEALSLEELPKRAVVL---GGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDE 243 (498)
Q Consensus 172 AtG~~p~~p-~i~g~~----~~~~~~~~~~l~~~~~~v~Vi---G~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~ 243 (498)
|||+.|..| ++||.+ +++|+++++.....+++.+|| |||++|+|+|..|+++|++||++++.+.+++.+++.
T Consensus 4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~ 83 (156)
T d1djqa2 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTL 83 (156)
T ss_dssp SSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTT
T ss_pred CCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchh
Confidence 899999987 799985 478999999988777655555 999999999999999999999999999888777778
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVD 313 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~ 313 (498)
....+.+.|.+.||++++++.+.+|.. +...+... .....+.++.++|..|+... .++.+++.|
T Consensus 84 ~~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~l~~~--~~~~~~~v~~~~g~~~~~~~--~~~~~le~D 147 (156)
T d1djqa2 84 EYPNMMRRLHELHVEELGDHFCSRIEP--GRMEIYNI--WGDGSKRTYRGPGVSPRDAN--TSHRWIEFD 147 (156)
T ss_dssp CHHHHHHHHHHTTCEEEETEEEEEEET--TEEEEEET--TCSCSCCCCCCTTSCSSCCC--CCCEEEECS
T ss_pred HHHHHHHHHhhccceEEeccEEEEecC--cceEEEee--eccccceeeeeeEEEecccC--CccCcEecc
Confidence 888999999999999999999999954 34444322 22346777888888888876 455556654
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=6.8e-15 Score=129.59 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=116.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC--------------CCC--CCHHHHHHHHHHHHhCCCEEEcCcc
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP--------------LRG--FDDEMRAVVARNLEGRGINLHPRTT 264 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~--------------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~ 264 (498)
.++|+|||||++|++.|..+++.|.+|+++++.+.. .+. ...++.+.+.+.+.+.++++..+ .
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-H 83 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-C
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-e
Confidence 468999999999999999999999999999875421 111 24567777888888899998866 6
Q ss_pred EEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCC--CcccCCceeCCCCCeEcCC-----CCCCCCCCeEEeccc
Q 042564 265 IKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRL--NLKAVGVEVDQTGAVKVDE-----NSRTNVPSIWAVGDV 337 (498)
Q Consensus 265 v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l--~l~~~gi~~~~~g~i~vd~-----~~~t~~~~iya~GD~ 337 (498)
|..+...++...++..++ .+.++.+++++|..|..... .+-...++++ +|+|.+|. .++|++|+|||+|||
T Consensus 84 V~~~~~~~~~~~v~~~~~-~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~-~g~i~~~~~~~~~~~~T~v~gV~aaGDv 161 (190)
T d1trba1 84 INKVDLQNRPFRLNGDNG-EYTCDALIIATGASARYHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDV 161 (190)
T ss_dssp EEEEECSSSSEEEEESSC-EEEEEEEEECCCEEECCEEESCGGGTTTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGG
T ss_pred eEEEecCCCcEEEEEeee-eEeeeeeeeecceeeeeecccceeecceEecC-CcEEEEecCCcccccccccCeEEEeEEe
Confidence 888877666666666544 68999999999976542210 0111234454 58899994 558999999999999
Q ss_pred CCC-CCChHHHHHHHHHHHHHH
Q 042564 338 TNR-MNLTPVALMEGTCFAKTV 358 (498)
Q Consensus 338 ~~~-~~~~~~A~~~g~~aa~~i 358 (498)
++. ...+..|..+|..||.++
T Consensus 162 ~~~~~~q~i~Aag~G~~AA~~a 183 (190)
T d1trba1 162 MDHIYRQAITSAGTGCMAALDA 183 (190)
T ss_dssp GCSSSCCHHHHHHHHHHHHHHH
T ss_pred cCcceeEEEEEeccHHHHHHHH
Confidence 975 456778889999998765
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.57 E-value=6.1e-14 Score=129.04 Aligned_cols=117 Identities=17% Similarity=0.220 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCC-------CcccCCceeCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRL-------NLKAVGVEVDQ 314 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l-------~l~~~gi~~~~ 314 (498)
++.+.+.+.+++.||+++++++|++|..+++. ..+.+++|+.+.+|.||+|+|-......= -++..++++.+
T Consensus 111 ~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~ 190 (251)
T d2i0za1 111 SVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITE 190 (251)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceeeeee
Confidence 45566788888999999999999999988776 45888999999999999999965533210 02333433321
Q ss_pred C--CC-----eEcCCCCCCCCCCeEEecccCCCC-----CChHHHHHHHHHHHHHHh
Q 042564 315 T--GA-----VKVDENSRTNVPSIWAVGDVTNRM-----NLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 315 ~--g~-----i~vd~~~~t~~~~iya~GD~~~~~-----~~~~~A~~~g~~aa~~i~ 359 (498)
- +. ...+....+..|++|++|++.... .....|...|++++..+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~~G~~a~~~~~ 247 (251)
T d2i0za1 191 LFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAG 247 (251)
T ss_dssp EEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred eeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHHHHHHHHHHHHH
Confidence 0 11 122222235789999999987431 123578889999998764
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=5.6e-17 Score=139.94 Aligned_cols=123 Identities=24% Similarity=0.308 Sum_probs=84.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
...++|+|||||||||+||+.|+++|++|+|+|+ ...+||......-+|
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~---------~~~~GG~l~~~~~~p---------------------- 89 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDA---------HSEIGGQFNIAKQIP---------------------- 89 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEES---------SSSSCTTHHHHTTST----------------------
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEec---------cCccCceEEEEEeCc----------------------
Confidence 3457999999999999999999999999999995 456777632111111
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
..-++.++ ..++...+++.+|++..++.. + .+. ...||.+|+|||+.|+.+
T Consensus 90 -----~~~~~~~~-----------~~~~~~~~~~~gV~i~l~~~V---------t-~~~---~~~~d~vilAtG~~~~~~ 140 (179)
T d1ps9a3 90 -----GKEEFYET-----------LRYYRRMIEVTGVTLKLNHTV---------T-ADQ---LQAFDETILASGIPNRAL 140 (179)
T ss_dssp -----TCTTHHHH-----------HHHHHHHHHHHTCEEEESCCC---------C-SSS---SCCSSEEEECCCEECCTT
T ss_pred -----ccchHHHH-----------HHHHHHhhhcCCeEEEeCCEE---------c-ccc---cccceeEEEeecCCCccc
Confidence 01122222 233445556678998886421 1 121 467899999999988877
Q ss_pred CCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHH
Q 042564 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEF 216 (498)
Q Consensus 181 ~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~ 216 (498)
.+|+.+ .+++++|+|+|.+++++
T Consensus 141 ~~pg~~-------------~g~~v~vigggd~a~~~ 163 (179)
T d1ps9a3 141 AQPLID-------------SGKTVHLIGGCDVAMEL 163 (179)
T ss_dssp HHHHHT-------------TTCCEEECGGGTCCSSC
T ss_pred ccchhc-------------cCCEEEEECCcHhhhhc
Confidence 655432 46899999999888775
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.55 E-value=6e-14 Score=129.35 Aligned_cols=118 Identities=13% Similarity=0.180 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe---EEEEECCCeEEEcCEEEEecCCCcCCCCC--C-----cccCCce
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG---VKVITDHGEEIVADVVLFATGRAPNTKRL--N-----LKAVGVE 311 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~---~~v~~~~g~~i~~D~vi~a~G~~p~~~~l--~-----l~~~gi~ 311 (498)
.++.+.+.+.+++.||+++++++|+++...++. ..+...+++++.||.||+|+|-.+....- + ++..++.
T Consensus 109 ~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~ 188 (253)
T d2gqfa1 109 EQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIP 188 (253)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhcccc
Confidence 456777888888999999999999999876654 22344567789999999999965443320 0 2222332
Q ss_pred eCC-----CCCeE---cC-CCCCC-CCCCeEEecccCCC-----CCChHHHHHHHHHHHHHHh
Q 042564 312 VDQ-----TGAVK---VD-ENSRT-NVPSIWAVGDVTNR-----MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 312 ~~~-----~g~i~---vd-~~~~t-~~~~iya~GD~~~~-----~~~~~~A~~~g~~aa~~i~ 359 (498)
+-+ .|++. +| ..|++ .+|++|++|.+... --.-++|..+|.+|++.|.
T Consensus 189 i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~n~~~a~~s~~~~~~~~~ 251 (253)
T d2gqfa1 189 VIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSIS 251 (253)
T ss_dssp EEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCEehhhhHhHHHHHHHHHh
Confidence 211 12333 33 25666 68999999977653 1124689999999999886
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.8e-13 Score=119.48 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=121.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC--C--------CCC----CCHHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL--P--------LRG----FDDEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~--~--------l~~----~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
.|+|||||++|+++|..+.++|.+|.++++... + .+. ..+.+...+....++.+++......+..+
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence 589999999999999999999999999986421 0 011 23667777778888888888888778777
Q ss_pred EEeCCe---EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCC-CCh
Q 042564 269 IKSEEG---VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRM-NLT 344 (498)
Q Consensus 269 ~~~~~~---~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~-~~~ 344 (498)
...... ......+++++.++.++.++|..++... ....++.....|.|.||...+|+.|+||++|||.+.+ ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~~~~ 160 (184)
T d1fl2a1 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTN--WLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQI 160 (184)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCG--GGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSCCH
T ss_pred cccccccceeeeeeecceeeecccccccccccccccc--cccccccccccceeccCCceeeeCCCEEEEeeecCcccCCc
Confidence 654332 4455667778999999999998776665 3455677777899999999999999999999999863 567
Q ss_pred HHHHHHHHHHHHHHh
Q 042564 345 PVALMEGTCFAKTVF 359 (498)
Q Consensus 345 ~~A~~~g~~aa~~i~ 359 (498)
..|..+|..+|..+.
T Consensus 161 vva~g~G~~aA~~~~ 175 (184)
T d1fl2a1 161 IIATGEGAKASLSAF 175 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EEEEECcHHHHHHHH
Confidence 788888888887653
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.40 E-value=1.8e-12 Score=123.75 Aligned_cols=118 Identities=20% Similarity=0.304 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe----EEEEECCCe--EEEcCEEEEecCCCcC-CC----------CC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG----VKVITDHGE--EIVADVVLFATGRAPN-TK----------RL 303 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~----~~v~~~~g~--~i~~D~vi~a~G~~p~-~~----------~l 303 (498)
...+.+.+.+.+.+.|+++++++.+.++..++++ +.+...++. .+.++.||+|+|-... .+ .+
T Consensus 151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~ 230 (322)
T d1d4ca2 151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGF 230 (322)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTC
T ss_pred hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccc
Confidence 3456677777888899999999999998775543 333333343 5889999999983211 10 00
Q ss_pred ------------------------CcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC----CCChHH----HHHHH
Q 042564 304 ------------------------NLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR----MNLTPV----ALMEG 351 (498)
Q Consensus 304 ------------------------~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~----~~~~~~----A~~~g 351 (498)
+++..++.++..+.+ +++..+|.+|++||+|+|+++ ..+... +.--|
T Consensus 231 ~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~-~~~~~~~~v~Glya~Ge~~~gvhG~nrlg~~~~~e~~v~g 309 (322)
T d1d4ca2 231 KATNHPGATGDGLDVALQAGAATRDLEMGGLVIDTKAEV-KSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYG 309 (322)
T ss_dssp CBCSCTTCSSHHHHHHHHTTBCEECTTCCEECCCTTCEE-EBTTTSSEEEEEEECGGGBCSSSTTSCCTTHHHHHHHHHH
T ss_pred cccCCCCccCHHHHHHHHcCCcceecccceEEecCceEE-EECCCCCEeCceEEchhhcCCccccccchhhHHHHHHHHH
Confidence 011112233333323 334556789999999999853 333333 33346
Q ss_pred HHHHHHHh
Q 042564 352 TCFAKTVF 359 (498)
Q Consensus 352 ~~aa~~i~ 359 (498)
++|++++.
T Consensus 310 ~~ag~~aa 317 (322)
T d1d4ca2 310 RIAGASAA 317 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.32 E-value=1.3e-11 Score=114.62 Aligned_cols=112 Identities=16% Similarity=0.227 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~v 320 (498)
+..+.+.+.+.+++.|++++.+++|++|..+++.+.|.+++| ++.||.||+|+|.....- ++.+|+..-. +...+
T Consensus 150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l---~~~~G~~~~~-~~p~~ 224 (276)
T d1ryia1 150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMF---FKQLGLNNAD-GKPYI 224 (276)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHH---HHHTTCCCCS-SCCEE
T ss_pred cccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHH---HhhcCCCccc-cccee
Confidence 456778888889999999999999999998877788888887 599999999999765432 3445554321 22111
Q ss_pred CCCCCCCCCCeE-EecccCCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 321 DENSRTNVPSIW-AVGDVTNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 321 d~~~~t~~~~iy-a~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
... -..+++| +.|..-.+.. .+-..|+.+++.+.+..
T Consensus 225 ~~~--p~~~~~~~~~g~~~~gi~---~~p~~g~~i~~~~~~~~ 262 (276)
T d1ryia1 225 GRH--PEDSRILFAAGHFRNGIL---LAPATGALISDLIMNKE 262 (276)
T ss_dssp EEE--TTEEEEEEEECCSSCTTT---THHHHHHHHHHHHTTCC
T ss_pred ccc--cCCCCEEECCCCCCCeEE---ECccHHHHHHHHHhcCC
Confidence 111 0123444 5554333222 23335777777777654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.30 E-value=8.5e-11 Score=109.42 Aligned_cols=112 Identities=16% Similarity=0.243 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~v 320 (498)
+..+...+.+.+++.|++++++++|.+|..+++++.|.+++| ++.||.||+|+|...+.- +..+|+......+ .+
T Consensus 149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~~l---~~~lg~~~~~~~~-~~ 223 (281)
T d2gf3a1 149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKL---LSKLNLDIPDEHF-II 223 (281)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHH---GGGGTEECCTSCC-EE
T ss_pred ccccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcchhh---HHhcCCccccccc-ee
Confidence 456778888999999999999999999999888899999888 599999999999765532 4555665433221 11
Q ss_pred CCCCCCCCCCeE-EecccCCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 321 DENSRTNVPSIW-AVGDVTNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 321 d~~~~t~~~~iy-a~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
. ..-..++++ +.|-.-.+.. .+-..|+++++.+..+.
T Consensus 224 ~--~~P~~~~~~~~~g~~g~g~~---~~p~~G~~~~~~~~~~~ 261 (281)
T d2gf3a1 224 D--LHPEHSNVVIAAGFSGHGFK---FSSGVGEVLSQLALTGK 261 (281)
T ss_dssp E--EETTEEEEEEEECCTTCCGG---GHHHHHHHHHHHHHHSC
T ss_pred c--cccCCCCEEEEeccCCcccc---cChhHHHHHHHHHhcCC
Confidence 1 011234544 4443222222 23346777777766544
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.28 E-value=1.4e-12 Score=123.71 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe------EEEEE-----CCCeEEEcCEEEEecCCCcCCCCC------C
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG------VKVIT-----DHGEEIVADVVLFATGRAPNTKRL------N 304 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~------~~v~~-----~~g~~i~~D~vi~a~G~~p~~~~l------~ 304 (498)
..+.+.+.+.+ .+.+++++++|++|..+.++ ..+.. .+++.+++|.||+|++...-..+. .
T Consensus 231 ~~l~~~l~~~l--~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~ 308 (373)
T d1seza1 231 QTLTDAICKDL--REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNP 308 (373)
T ss_dssp HHHHHHHHTTS--CTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSB
T ss_pred hHHHHHHHHHh--ccceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCc
Confidence 34444444333 26789999999999876543 22322 234578999999998742211100 0
Q ss_pred cccCCce----eCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhC
Q 042564 305 LKAVGVE----VDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 305 l~~~gi~----~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 360 (498)
+....+. .+.++.+.+++.++|+.|+||++||+.+++ ....|+.+|+.||+.|..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~pglf~aGd~~~g~-~~~~A~~~G~~aA~~i~~ 367 (373)
T d1seza1 309 FLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGL-SVGKALSSGCNAADLVIS 367 (373)
T ss_dssp CCCTTSCCCCCTTHHHHHHHHHHHHHHSTTEEECCSSSSCS-SHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccccccCCCcEeecccccCCCCCCEEEEecCCCch-hHHHHHHHHHHHHHHHHH
Confidence 0000000 000123444556788999999999998865 567899999999999863
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=99.28 E-value=1.3e-10 Score=111.14 Aligned_cols=118 Identities=18% Similarity=0.257 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEE---ECCCe--EEEcCEEEEecCCCcCCCCC-----C------
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVI---TDHGE--EIVADVVLFATGRAPNTKRL-----N------ 304 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~---~~~g~--~i~~D~vi~a~G~~p~~~~l-----~------ 304 (498)
..+...+.+..++.|++++.++++.++..+++.+ .+. ..+|+ .+.++.||+|||-....... .
T Consensus 158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~ 237 (336)
T d2bs2a2 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGT 237 (336)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHH
T ss_pred HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhh
Confidence 4566777788888999999999999988877763 222 24665 47899999999843211100 0
Q ss_pred --cccCC-ceeCCCCCeEcCCCCCCCCCCeEEecccCCC-----CCC----hHHHHHHHHHHHHHHh
Q 042564 305 --LKAVG-VEVDQTGAVKVDENSRTNVPSIWAVGDVTNR-----MNL----TPVALMEGTCFAKTVF 359 (498)
Q Consensus 305 --l~~~g-i~~~~~g~i~vd~~~~t~~~~iya~GD~~~~-----~~~----~~~A~~~g~~aa~~i~ 359 (498)
....| ..+.+-++|.++...+|+.|++|++||+... ..+ ...+...+..+++.+.
T Consensus 238 ~~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~ 304 (336)
T d2bs2a2 238 AIALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFA 304 (336)
T ss_dssp HHHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccceeechhhcccCCcceeccccccccccccccchhhccchhhhhcchhHHHHH
Confidence 11223 2344567899999999999999999998642 222 2334444555555543
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.8e-11 Score=104.20 Aligned_cols=118 Identities=19% Similarity=0.376 Sum_probs=88.7
Q ss_pred CCCCCCCCCCc--ccChHHHhc-cccCCCeEEEEcCCHHHHHHHHHHHHCCCc---------------------------
Q 042564 177 AQRAPIPGQEL--AITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGST--------------------------- 226 (498)
Q Consensus 177 p~~p~i~g~~~--~~~~~~~~~-l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~--------------------------- 226 (498)
|+.|+|||.+. +++..++++ ....+++|+|||||++|+|+|..+.+.|.+
T Consensus 2 Pr~p~IpG~d~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (162)
T d1ps9a2 2 PRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQ 81 (162)
T ss_dssp ECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTT
T ss_pred CCCCCCCCCCCCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccc
Confidence 78899999864 778777765 344679999999999999999999998864
Q ss_pred ----------EEEEeeCCC-CCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe-EEEcCEEEEec
Q 042564 227 ----------VDLLFRKEL-PLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE-EIVADVVLFAT 294 (498)
Q Consensus 227 ----------V~lv~~~~~-~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~i~~D~vi~a~ 294 (498)
++.+..... ....++..........++..||+++.++.+.++. ++++.+...+.+ .++||.||+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~ 159 (162)
T d1ps9a2 82 GMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICA 159 (162)
T ss_dssp CCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECC
T ss_pred cceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECC
Confidence 333333332 2233555566677888999999999999999984 556555554333 58999999999
Q ss_pred CC
Q 042564 295 GR 296 (498)
Q Consensus 295 G~ 296 (498)
|.
T Consensus 160 Gq 161 (162)
T d1ps9a2 160 GQ 161 (162)
T ss_dssp CE
T ss_pred CC
Confidence 95
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.24 E-value=1.1e-12 Score=123.30 Aligned_cols=136 Identities=19% Similarity=0.239 Sum_probs=81.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc---Cc---hhhHHHHHHhHhhHHHhhh
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR---GC---VPKKILVYGASFGGELEDA 95 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~---g~---~p~~~l~~~~~~~~~~~~~ 95 (498)
..+||+|||||++||++|++|++.|.+|+|+|| ...+||+|.+. |+ .|+...... ... ...
T Consensus 6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek---------~~~iGGtW~~n~ypg~~~d~~~~~~~~s-~~~---~~~ 72 (298)
T d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIET---------AGDVGGVWYWNRYPGARCDIESIEYCYS-FSE---EVL 72 (298)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCTHHHHCCCTTCBCSSCTTTSSCC-SCH---HHH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEc---------CCCcccccccCCCCCceecccccccccc-ccc---ccc
Confidence 368999999999999999999999999999996 56789987421 21 111000000 000 000
Q ss_pred hcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCc--EEEEeE-EEEE----eCCEEEEEeCCCceEEEEcCe
Q 042564 96 RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGV--KLYEGE-GKIV----GPNEVEVTQLDGTKLSYSAKH 168 (498)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~~~-~~~i----~~~~~~v~~~~g~~~~~~~d~ 168 (498)
..+.+. ..... .+++..+++.+.++.++ .+..++ +..+ +.+.+.|.+.++. .+++|.
T Consensus 73 ~~~~~~---~~~p~-----------~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~--~~~~~~ 136 (298)
T d1w4xa1 73 QEWNWT---ERYAS-----------QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD--RIRARY 136 (298)
T ss_dssp HHCCCC---BSSCB-----------HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC--EEEEEE
T ss_pred CCCCCc---cccCc-----------cchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecccccc--ccccce
Confidence 000000 00001 12233344455555555 244444 3333 3467899988765 889999
Q ss_pred EEEcCC--CCCCCCCCCCCC
Q 042564 169 ILIATG--SRAQRAPIPGQE 186 (498)
Q Consensus 169 liiAtG--~~p~~p~i~g~~ 186 (498)
||+||| +.|..|.+++.+
T Consensus 137 ~i~atG~ls~~~~p~~~~~~ 156 (298)
T d1w4xa1 137 LIMASGQLSDALTGALFKID 156 (298)
T ss_dssp EEECCCSCCCCTTHHHHTSE
T ss_pred EEEeecccccccCCcccccc
Confidence 999999 678888776654
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.24 E-value=1.9e-12 Score=122.34 Aligned_cols=109 Identities=16% Similarity=0.281 Sum_probs=67.8
Q ss_pred HHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC-CC--eEEEcCEEEEecCCCcCCCCCCcccCCce-------eCCCCC
Q 042564 248 VARNLEGRGINLHPRTTIKELIKSEEGVKVITD-HG--EEIVADVVLFATGRAPNTKRLNLKAVGVE-------VDQTGA 317 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~-------~~~~g~ 317 (498)
+.+..++.|++++++++|++|..+++++.+++. ++ ++++||.||+|+|......++ ....-. +...|.
T Consensus 225 ~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll--~~~~~~~~~~~~~~~~~~~ 302 (347)
T d2ivda1 225 IDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLL--RPLDDALAALVAGIYNLGH 302 (347)
T ss_dssp HHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHH--TTTCHHHHHHHHTCCBTTH
T ss_pred HHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhc--cCCCHHHHHHhhcceecCc
Confidence 333444558999999999999887776555543 33 368999999999854322221 110000 001111
Q ss_pred ---eEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 318 ---VKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 318 ---i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
+...+...++.|++|++||...+.. .+.|+.+|+.+|+.|.
T Consensus 303 ~~~~~~~~~~~~~~p~~~~~G~~~~g~~-~~~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 303 LERVAAIDAALQRLPGLHLIGNAYKGVG-LNDCIRNAAQLADALV 346 (347)
T ss_dssp HHHHHHHHHHHHTSTTEEECSTTTSCCS-HHHHHHHHHHHHHHHC
T ss_pred ccceecccccccCCCCEEEecccccCCC-HHHHHHHHHHHHHHhh
Confidence 1111222468999999999987654 4678999999998874
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.8e-12 Score=125.35 Aligned_cols=111 Identities=20% Similarity=0.120 Sum_probs=71.9
Q ss_pred HHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC-----CC--cccCCceeCCCC-CeEc
Q 042564 249 ARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR-----LN--LKAVGVEVDQTG-AVKV 320 (498)
Q Consensus 249 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~-----l~--l~~~gi~~~~~g-~i~v 320 (498)
...+++.|++++++++|.+|..+++++.|++.+|+++.+|.||+|++..--... +. ..+..-.....+ .-..
T Consensus 214 ~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 293 (383)
T d2v5za1 214 ERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQY 293 (383)
T ss_dssp HHHHHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHH
T ss_pred HHHHHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCccchh
Confidence 344556799999999999999888889999999999999999999864221110 00 000000001111 1112
Q ss_pred CCCCCCCCCCeEEecccCCC--CCChHHHHHHHHHHHHHHh
Q 042564 321 DENSRTNVPSIWAVGDVTNR--MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 321 d~~~~t~~~~iya~GD~~~~--~~~~~~A~~~g~~aa~~i~ 359 (498)
...+.....+|+.+|+.... ......|+.+|+.+|..++
T Consensus 294 ~~~~~~~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~ 334 (383)
T d2v5za1 294 GRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREIL 334 (383)
T ss_dssp GGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCcCceEeccccccccCCcchHHHHHHHHHHHHHHH
Confidence 22334566789999976543 4556779999999988764
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=99.23 E-value=1.4e-12 Score=121.20 Aligned_cols=108 Identities=20% Similarity=0.186 Sum_probs=75.0
Q ss_pred HhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCC-----cccCC-ceeCCCCCeEcC----C
Q 042564 253 EGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLN-----LKAVG-VEVDQTGAVKVD----E 322 (498)
Q Consensus 253 ~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~-----l~~~g-i~~~~~g~i~vd----~ 322 (498)
+..+..++.++.+..+...++.+.|++.+|+.+.+|.+++++........+. +.... ..++..++..++ +
T Consensus 221 ~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~ 300 (347)
T d1b5qa1 221 KIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYD 300 (347)
T ss_dssp CBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHH
T ss_pred hhcccccccccccccccccCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchh
Confidence 4457789999999999988888999999999999999999876432111100 00000 001122233333 2
Q ss_pred CCCCCCCCeEEecccCCC--CCChHHHHHHHHHHHHHHhC
Q 042564 323 NSRTNVPSIWAVGDVTNR--MNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 323 ~~~t~~~~iya~GD~~~~--~~~~~~A~~~g~~aa~~i~~ 360 (498)
.++++.++||++||+++. +..++.|+.+|+.+|+.|++
T Consensus 301 ~~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~ 340 (347)
T d1b5qa1 301 QLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN 340 (347)
T ss_dssp HHHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHH
T ss_pred hcccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHH
Confidence 456788999999999874 56778899999999998864
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=99.22 E-value=1.9e-12 Score=124.26 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=67.3
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEEEEE----CCCeEEEcCEEEEecCCCcCCCC-----CCcc-cCCceeCCCC--C
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVKVIT----DHGEEIVADVVLFATGRAPNTKR-----LNLK-AVGVEVDQTG--A 317 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~----~~g~~i~~D~vi~a~G~~p~~~~-----l~l~-~~gi~~~~~g--~ 317 (498)
..+++.|++++++++|++|..+++++.+.. .++++++||.||+|++....... +... ...+...... +
T Consensus 243 ~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~~ 322 (370)
T d2iida1 243 AMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQF 322 (370)
T ss_dssp HHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTHH
T ss_pred HHHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcccc
Confidence 334667999999999999999888876654 23458999999999863211100 0000 0000000000 1
Q ss_pred eEcCCCCCCCCCCeEEecccCCCC-CChHHHHHHHHHHHHHH
Q 042564 318 VKVDENSRTNVPSIWAVGDVTNRM-NLTPVALMEGTCFAKTV 358 (498)
Q Consensus 318 i~vd~~~~t~~~~iya~GD~~~~~-~~~~~A~~~g~~aa~~i 358 (498)
......+.+...+||++||++..+ ..+..|+.+|..||.+|
T Consensus 323 ~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i 364 (370)
T d2iida1 323 QHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDV 364 (370)
T ss_dssp HHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccCCEEEecccccCCCcccHHHHHHHHHHHHHH
Confidence 111122333456799999987654 34567999999999987
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=9.1e-11 Score=110.69 Aligned_cols=125 Identities=26% Similarity=0.373 Sum_probs=77.4
Q ss_pred HHHHHHhCCCEEEcCccEEEEEEeCC--------eEEEEE---CCCe--EEEcCEEEEecCCCcCCCCC-----C-----
Q 042564 248 VARNLEGRGINLHPRTTIKELIKSEE--------GVKVIT---DHGE--EIVADVVLFATGRAPNTKRL-----N----- 304 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~~~~--------~~~v~~---~~g~--~i~~D~vi~a~G~~p~~~~l-----~----- 304 (498)
+.+.+++.+++++.++.+.++..+++ ...+.. .+++ .+.++.||+|+|-....... .
T Consensus 144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG 223 (305)
T d1chua2 144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDG 223 (305)
T ss_dssp HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHH
T ss_pred HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceeccc
Confidence 34556778999999999998876543 223332 3444 47899999999843321110 0
Q ss_pred ---cccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC-----CCChHH----HHHHHHHHHHHHhCCCCCCCCCCCCc
Q 042564 305 ---LKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR-----MNLTPV----ALMEGTCFAKTVFGGQPCKPDYRDVP 372 (498)
Q Consensus 305 ---l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~-----~~~~~~----A~~~g~~aa~~i~~~~~~~~~~~~~~ 372 (498)
..++|.++..-++|.+|.+.+|+.|++||+|+++.. ..+... ....++.+.+++....+...+...+|
T Consensus 224 ~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~~~~~G~~~~~~N~~gerfv~~~~~~~d~~~~~~~~~~~~~~p 303 (305)
T d1chua2 224 IAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPYAHDISTLP 303 (305)
T ss_dssp HHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC---CCCCCBC
T ss_pred EeeccccceeeEecceeEECCcccCCCCCceecccEEEeeecCcCceeEcCCccchhccchhHHHHHHhcccccCcCCCC
Confidence 134677777778999999999999999999997421 122222 22235556677665433333333444
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.17 E-value=3.3e-11 Score=106.69 Aligned_cols=118 Identities=20% Similarity=0.286 Sum_probs=70.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC-chhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG-CVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g-~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.||||||||||||+.||+.+++.|.+++||++ + ...+|+.|.+.. ..|.+-++.. ..
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~------~--~~~ig~~~cnp~~gg~~kg~l~r--------ei------ 59 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQ------S--LDAVMMPFLPPKPPFPPGSLLER--------AY------ 59 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEES------C--GGGTTCCSSCCCSCCCTTCHHHH--------HC------
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEe------c--cchhcccccCCccccCCCcceee--------ee------
Confidence 59999999999999999999999999999993 1 234455543321 1111111000 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEE--eCCEE-EEEeCCCceEEEEcCeEEEcCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV--GPNEV-EVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i--~~~~~-~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
+......|. +... . .+.+....+++++.+++..+ +.+.+ -|.+.+|. .+.++.|||+||+-
T Consensus 60 -d~kG~av~a-~raQ----~------k~~l~~~~nL~i~q~~V~dli~e~~~v~gV~t~~G~--~~~AkaVILtTGTF 123 (230)
T d2cula1 60 -DPKDERVWA-FHAR----A------KYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGP--PARGEKVVLAVGSF 123 (230)
T ss_dssp -CTTCCCHHH-HHHH----H------HHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSC--CEECSEEEECCTTC
T ss_pred -eccchhhhh-HHHH----H------HHHHhhhcCHHHHhccceeeEecccceeeEEecccc--EEEEeEEEEccCcc
Confidence 000010111 0011 1 11222345899999886643 44544 47788876 89999999999963
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.17 E-value=7.3e-11 Score=108.58 Aligned_cols=185 Identities=21% Similarity=0.275 Sum_probs=102.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------------------------------C---CCCC-H-----
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------------------------------L---RGFD-D----- 242 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------------------------------l---~~~~-~----- 242 (498)
.++|||+|+.|+.+|..++++|.+|.++++...- + ..++ +
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 82 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVER 82 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHhh
Confidence 4899999999999999999999999999975310 0 0011 1
Q ss_pred ------HHHHHHHHHHHhCCCEEEcCcc-EE-----EEEEeCCe--EEEEECCCeEEEcCEEEEecCCCc-----CCCCC
Q 042564 243 ------EMRAVVARNLEGRGINLHPRTT-IK-----ELIKSEEG--VKVITDHGEEIVADVVLFATGRAP-----NTKRL 303 (498)
Q Consensus 243 ------~~~~~l~~~l~~~Gv~i~~~~~-v~-----~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p-----~~~~l 303 (498)
.+.+.+...+++.||+++.+.. .. .+...++. ......+++.+.+|.|++|||.+| +.+.+
T Consensus 83 ~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~~ 162 (259)
T d1onfa1 83 RDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENL 162 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTTS
T ss_pred hheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccccccc
Confidence 1222345667788999987632 11 11111111 011112345699999999999999 56666
Q ss_pred CcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeE
Q 042564 304 NLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSV 383 (498)
Q Consensus 304 ~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (498)
.+++.++.++ ++++.+|+..+|++.++|++||++........+..+...+.. ...........+..+++.+++..
T Consensus 163 ~l~~~~i~ts-~~~~~~d~~~~t~Vig~gaiGdv~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 237 (259)
T d1onfa1 163 KLEKLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYN----EERYLNKKENVTEDIFYNVQLTP 237 (259)
T ss_dssp SCTTTTCCBS-SSCEEECTTCBCSSSSEEECSTTEEEC----------------------------------CBCCCCHH
T ss_pred ccccceeeec-ccccccccCCceeEeeEEEEEEeeehhhhhhhcchhhHhhhc----CCccccccCCcceEEecCcEEEE
Confidence 6777777655 578999999999999999999998653333322222221111 11222334456677788888877
Q ss_pred eeCCHHHHH
Q 042564 384 VGLSEEQAI 392 (498)
Q Consensus 384 vG~~e~~a~ 392 (498)
|+.++.+..
T Consensus 238 V~~~~G~~~ 246 (259)
T d1onfa1 238 VAINAGRLL 246 (259)
T ss_dssp HHHHHHHHH
T ss_pred EEcccceeE
Confidence 776655543
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.12 E-value=1.1e-10 Score=110.15 Aligned_cols=33 Identities=36% Similarity=0.460 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|||||||||++|++||++|++.|.+|+||||
T Consensus 15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK 47 (308)
T d1y0pa2 15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEK 47 (308)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence 369999999999999999999999999999995
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.08 E-value=9e-11 Score=102.94 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=104.5
Q ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCCCCC---------CCCHHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 199 ELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELPLR---------GFDDEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 199 ~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~l~---------~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
.++++|+|||+|++|+++|..|+++|. +|+++++.+.+.. .....+...........+..+.....+...
T Consensus 2 ~~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (196)
T d1gtea4 2 AYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSEN 81 (196)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTT
T ss_pred CCCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccc
Confidence 457999999999999999999999998 5999999887532 134455555556666677887777555221
Q ss_pred EEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCc--ccCCceeCCCCCeEcCC-CCCCCCCCeEEecccCCCCCChH
Q 042564 269 IKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNL--KAVGVEVDQTGAVKVDE-NSRTNVPSIWAVGDVTNRMNLTP 345 (498)
Q Consensus 269 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l--~~~gi~~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~ 345 (498)
. ....+.....+|.+++++|..+....... ..........+....+. .++|+.|.+|+.||+++....+.
T Consensus 82 ~-------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~~av 154 (196)
T d1gtea4 82 E-------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTV 154 (196)
T ss_dssp S-------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHH
T ss_pred e-------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcchHH
Confidence 0 01111223457889999997655443211 11122233344555554 57899999999999998888888
Q ss_pred HHHHHHHHHHHHH
Q 042564 346 VALMEGTCFAKTV 358 (498)
Q Consensus 346 ~A~~~g~~aa~~i 358 (498)
.|..+|+.++..+
T Consensus 155 ~a~~~g~~~a~~v 167 (196)
T d1gtea4 155 ESVNDGKQASWYI 167 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhhehhH
Confidence 8888888777765
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=2.5e-10 Score=99.71 Aligned_cols=112 Identities=19% Similarity=0.207 Sum_probs=74.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+++||+||||||+|+.||+.|++.|.+|+||| +...||.|.+...+.. .. ++.
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie----------~~~~~g~~~~~~~i~~---------------~~--~~~ 56 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT----------GMEKGGQLTTTTEVEN---------------WP--GDP 56 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEEC----------CSSTTGGGGGCSBCCC---------------ST--TCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEE----------eecccccccccchhhh---------------hh--ccc
Confidence 46899999999999999999999999999999 5666788765544331 00 000
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
.......+.. .....+.+.++++..+.+..++ ...+.+....+ .+.++.+++++|..|+
T Consensus 57 ----~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~V~~~~~~~~~~~v~~~~~---~~~~~~viva~G~~~~ 117 (190)
T d1trba1 57 ----NDLTGPLLME-----------RMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNG---EYTCDALIIATGASAR 117 (190)
T ss_dssp ----SSCBHHHHHH-----------HHHHHHHHTTCEEECCCEEEEECSSSSEEEEESSC---EEEEEEEEECCCEEEC
T ss_pred ----cccchHHHHH-----------HHHHHHHhcCcEEecceeEEEecCCCcEEEEEeee---eEeeeeeeeecceeee
Confidence 0111122222 2223345567888777766554 33456655443 7889999999997765
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.00 E-value=1e-09 Score=104.72 Aligned_cols=45 Identities=24% Similarity=0.247 Sum_probs=36.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCC--CcEEEEccCCCCCCCCcCCCccccccc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSEVIGGVGGTCVI 73 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lvek~~~~~~~~~~~~~GG~~~~ 73 (498)
|...++|+|||||++||++|..|++.| .+|+|+|| ...+||++.+
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk---------~~~iGG~W~~ 47 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFER---------RGSPGGVWNY 47 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECS---------SSSSSTTCSC
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEEC---------CCCCCCcccc
Confidence 334468999999999999999998866 59999996 5678887643
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.99 E-value=4.4e-10 Score=106.49 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+++||||||||++|++||++|++.|.+|+||||
T Consensus 18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK 50 (317)
T d1qo8a2 18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDK 50 (317)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECS
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeC
Confidence 468999999999999999999999999999995
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.97 E-value=4.2e-09 Score=101.93 Aligned_cols=115 Identities=23% Similarity=0.345 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEEE------CC---------CeEEEcCEEEEecCCCcCCCCCCc
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVIT------DH---------GEEIVADVVLFATGRAPNTKRLNL 305 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~------~~---------g~~i~~D~vi~a~G~~p~~~~l~l 305 (498)
.....+.+..+..|+.+.....+.++..++++ . .+.. .+ +....++..+++.|.+......-+
T Consensus 142 ~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li 221 (380)
T d2gmha1 142 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLY 221 (380)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHH
Confidence 34556666677788888888888888776554 1 1111 11 123557888888887554321001
Q ss_pred ccCCc--eeCCCCCeEcCCCCCCCCCCeEEecccCCCC-----CChHHHHHHHHHHHHHHh
Q 042564 306 KAVGV--EVDQTGAVKVDENSRTNVPSIWAVGDVTNRM-----NLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 306 ~~~gi--~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~-----~~~~~A~~~g~~aa~~i~ 359 (498)
+...+ .....+++. .--+...+++..+||+++.. .-.+.|+.+|+.||+.+.
T Consensus 222 ~~~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~ 280 (380)
T d2gmha1 222 KKFDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIF 280 (380)
T ss_dssp HHTTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccccccc--cccccccCCeeEEeccccccchhhcCCeeeeeccHHHHHHHHH
Confidence 11111 011111110 01123568999999999862 235789999999999875
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=2.6e-10 Score=104.17 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC--eEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEE--GVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
..+.+.+.+.+++.|++++++++|++|..+++ .+..++.+|+++.||.||....+-|+
T Consensus 236 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~~s~~~~ 295 (297)
T d2bcgg1 236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPE 295 (297)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEChhhccC
Confidence 45788889999999999999999999976543 35555678889999999986555443
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.96 E-value=9.9e-10 Score=87.17 Aligned_cols=93 Identities=24% Similarity=0.314 Sum_probs=67.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+|+ .+ .+ +
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~------~~---~i---------l-------------------------- 57 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEA------RE---RI---------L-------------------------- 57 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECS------SS---SS---------S--------------------------
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEee------ec---cc---------c--------------------------
Confidence 4799999999999999999999999999993 11 10 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATG 174 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG 174 (498)
+.+|. .+...+.+.+++.||+++.++ +..++.+...+...++...++++|.+++|+|
T Consensus 58 --~~~d~------------~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 58 --PTYDS------------ELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp --TTSCH------------HHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred --ccccc------------hhHHHHHHHHHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 11121 122233455667799999886 6677777766665555556899999999998
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=6.7e-09 Score=83.42 Aligned_cols=94 Identities=24% Similarity=0.319 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVI 278 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~ 278 (498)
..|+|+|||+|.+|+|.|..|.+...+|++++|.+.+ ..++.+.+.+.+..+..++.++.++.+.++..++.. ..|+
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~~~v~~v~ 103 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF--RAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVR 103 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC--CCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc--cchhHHHHHHHHhhcccceeEecceEEEEEECCCCceEEEE
Confidence 4689999999999999999999999999999998864 257778888888888889999999999999987654 3455
Q ss_pred ECC---C---eEEEcCEEEEecC
Q 042564 279 TDH---G---EEIVADVVLFATG 295 (498)
Q Consensus 279 ~~~---g---~~i~~D~vi~a~G 295 (498)
+.+ + +++++|-+++++|
T Consensus 104 l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 104 LRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp EECCTTCCCCEEEECSEEEECSC
T ss_pred EEECCCCceEEEEECCEEEEEeC
Confidence 533 1 4699999999987
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=1.8e-09 Score=85.69 Aligned_cols=91 Identities=23% Similarity=0.283 Sum_probs=66.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+|+ .+ .+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~------~~---~~------------------------------------ 56 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEM------FD---AP------------------------------------ 56 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SS---SS------------------------------------
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEee------cc---hh------------------------------------
Confidence 4799999999999999999999999999993 11 10
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe---CCEEEEEeCCCceEEEEcCeEEEcCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG---PNEVEVTQLDGTKLSYSAKHILIATG 174 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~---~~~~~v~~~~g~~~~~~~d~liiAtG 174 (498)
.+.+|. .+...+.+.+++.||+++.++ +..+. ...+.+..++|+ ++.+|.||+|||
T Consensus 57 -l~~~d~------------~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~D~vi~a~G 116 (116)
T d1gesa2 57 -LPSFDP------------MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGR--SETVDCLIWAIG 116 (116)
T ss_dssp -STTSCH------------HHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSC--EEEESEEEECSC
T ss_pred -hhhcch------------hhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCC--EEEcCEEEEecC
Confidence 011111 122334455677899999987 44442 335778888876 889999999998
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.92 E-value=2e-11 Score=110.80 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=82.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCC-------CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhh
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFG-------AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDA 95 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g-------~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~ 95 (498)
.++|+|||||||||+||.+|++.| ++|+|+|+ ...+||.+. .++.|...
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~---------~~~~GG~~~-~gi~p~~~-------------- 57 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEM---------LPTPWGLVR-SGVAPDHP-------------- 57 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEES---------SSSCSTHHH-HTSCTTCT--------------
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEec---------CCCCCCeee-eccCcccc--------------
Confidence 368999999999999999999977 58999995 556777642 23223100
Q ss_pred hcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC
Q 042564 96 RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~ 175 (498)
.+. .+.......+...++++..+... ... . ........||.+++|||+
T Consensus 58 -------------~~~-----------~~~~~~~~~~~~~g~~~~~~~~v--~~~-~-----~~~~~~~~~~~v~~atGa 105 (239)
T d1lqta2 58 -------------KIK-----------SISKQFEKTAEDPRFRFFGNVVV--GEH-V-----QPGELSERYDAVIYAVGA 105 (239)
T ss_dssp -------------GGG-----------GGHHHHHHHHTSTTEEEEESCCB--TTT-B-----CHHHHHHHSSEEEECCCC
T ss_pred -------------cch-----------hhhhhhhhhhccCCceEEEEEEe--ccc-c-----chhhhhccccceeeecCC
Confidence 000 11111223445568888775311 100 0 001113468999999998
Q ss_pred CCCCCCCCCCCcc--cChHHHhc---------c----ccCCCeEEEEcCCHHHHHHHHHH
Q 042564 176 RAQRAPIPGQELA--ITSDEALS---------L----EELPKRAVVLGGGYIAVEFASIW 220 (498)
Q Consensus 176 ~p~~p~i~g~~~~--~~~~~~~~---------l----~~~~~~v~ViG~G~~g~e~a~~l 220 (498)
.+..+.+++.+.. ....+... . ....++++|+|+|..+++++..+
T Consensus 106 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~ 165 (239)
T d1lqta2 106 QSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTL 165 (239)
T ss_dssp CEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHH
T ss_pred CccccccccccccccccchhhhhhhhccccccccceeecCCCEEEEeCCCchHHHHHHHH
Confidence 8766655554321 00000000 0 01135777888899999988754
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=2.6e-09 Score=100.65 Aligned_cols=153 Identities=19% Similarity=0.306 Sum_probs=84.6
Q ss_pred CccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccc-------------------cCchhhHH
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVI-------------------RGCVPKKI 81 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~-------------------~g~~p~~~ 81 (498)
++||+|||+|+||++||+++++. |.+|+|+||....-. .....-||.+.. .-|.|..+
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g-~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d~~~v 83 (311)
T d1kf6a2 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS-HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVV 83 (311)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS-GGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCC-cHHHHhhhHhhhcCCCCCHHHHHHHHHhhccCccHHHHH
Confidence 58999999999999999999984 789999995211100 001112332211 11445444
Q ss_pred HHHHhHhhHHHhhhhcCCcccccccccCHH-----------HHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EE--EE
Q 042564 82 LVYGASFGGELEDARSYGWEVHEKIDFDWK-----------KLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GK--IV 147 (498)
Q Consensus 82 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~--~i 147 (498)
.......+..+..+..++.++.......+. ............+...+....+..+|+++.++ +. ..
T Consensus 84 ~~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~ 163 (311)
T d1kf6a2 84 DYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV 163 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE
T ss_pred HHHHHhhhHhHHhhhhcccccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcceeEeeeEeeeeEe
Confidence 445555555556666666654431110000 00000000011122234445555689999987 33 23
Q ss_pred eCCEEE----EEeCCCceEEEEcCeEEEcCCCC
Q 042564 148 GPNEVE----VTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 148 ~~~~~~----v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
+++.+. ....+|+...+.++.||||||.-
T Consensus 164 d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~ 196 (311)
T d1kf6a2 164 DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGA 196 (311)
T ss_dssp ETTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred cCCcceeEEEEEcCCCcEEEEECCEEEEcCCCc
Confidence 555543 22367777788999999999964
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=4.8e-09 Score=89.49 Aligned_cols=125 Identities=21% Similarity=0.196 Sum_probs=88.3
Q ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC---------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEE
Q 042564 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP---------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 199 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~---------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
..+|+|+|||+|+.|++.|..|+++|.+|+++++.+.+ .+. ...++.+.+.+.+++.||++++|+.|+.
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~ 120 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA 120 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence 35789999999999999999999999999999998754 221 3456778888889999999999987742
Q ss_pred EEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCC-hHH
Q 042564 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNL-TPV 346 (498)
Q Consensus 268 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~-~~~ 346 (498)
+. ...+|.||+|+|..|..... .+++ . -.++-.+|........ ...
T Consensus 121 -------------~~-~~~~d~vilAtG~~~~~~~~----pg~~---~------------g~~v~vigggd~a~~~~~~~ 167 (179)
T d1ps9a3 121 -------------DQ-LQAFDETILASGIPNRALAQ----PLID---S------------GKTVHLIGGCDVAMELDARR 167 (179)
T ss_dssp -------------SS-SCCSSEEEECCCEECCTTHH----HHHT---T------------TCCEEECGGGTCCSSCCHHH
T ss_pred -------------cc-cccceeEEEeecCCCccccc----chhc---c------------CCEEEEECCcHhhhhccchh
Confidence 11 24689999999997765321 1111 1 1345555543333333 567
Q ss_pred HHHHHHHHHH
Q 042564 347 ALMEGTCFAK 356 (498)
Q Consensus 347 A~~~g~~aa~ 356 (498)
|..+|..++-
T Consensus 168 Av~~G~~va~ 177 (179)
T d1ps9a3 168 AIAQGTRLAL 177 (179)
T ss_dssp HHHHHHHHHH
T ss_pred hhhccCEEEE
Confidence 8888765553
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.88 E-value=3.7e-09 Score=99.25 Aligned_cols=58 Identities=24% Similarity=0.273 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
+..+...+.+.+++.|++++.+++|+++..+++++ .|.+++| ++.||.||+|+|....
T Consensus 147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~ 205 (305)
T d1pj5a2 147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGA 205 (305)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHH
T ss_pred hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHH
Confidence 46678888888999999999999999999988874 4677766 6999999999997654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.88 E-value=9.8e-09 Score=81.84 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=65.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
..+++|||||+.|+.+|..|++.|.+|+|+|+ .++. +|
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~------~~~~------------l~------------------------ 67 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVET------QPRL------------MS------------------------ 67 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEES------SSST------------TT------------------------
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEee------cccc------------cc------------------------
Confidence 46899999999999999999999999999993 1110 00
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATG 174 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG 174 (498)
..++ ......+.+.+++.||+++.++ +..+..+.+ .+++|+ ++.+|.+|+|+|
T Consensus 68 ---~~~~------------~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~~v--~l~dg~--~i~~D~vi~a~G 121 (121)
T d1d7ya2 68 ---RAAP------------ATLADFVARYHAAQGVDLRFERSVTGSVDGVV--LLDDGT--RIAADMVVVGIG 121 (121)
T ss_dssp ---TTSC------------HHHHHHHHHHHHTTTCEEEESCCEEEEETTEE--EETTSC--EEECSEEEECSC
T ss_pred ---ccCC------------HHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEE--EECCCC--EEECCEEEEeeC
Confidence 0001 0112334456778899999887 555666654 456776 899999999998
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=2.3e-09 Score=102.00 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=82.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---------------------chhhH
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---------------------CVPKK 80 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---------------------~~p~~ 80 (498)
++|||+|||+|+|||+||++|++.|.+|+|+||.... ..+.....||.+.... |-|..
T Consensus 6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~-gg~s~~A~GGi~a~~~~~~~Ds~e~~~~Dtl~aG~~l~d~~~ 84 (330)
T d1neka2 6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT-RSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDA 84 (330)
T ss_dssp EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGG-GSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHHTSCSCHHH
T ss_pred ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCC-CCcHHHHhhhHheEcCCCCCCCHHHHHHHHHHhhhhccCHHH
Confidence 4699999999999999999999999999999952111 0011112244332111 22333
Q ss_pred HHHHHhHhhHHHhhhhcCCcccccccc--cCH---------------HHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE
Q 042564 81 ILVYGASFGGELEDARSYGWEVHEKID--FDW---------------KKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE 143 (498)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 143 (498)
+........+.+..+..+|.++..... +.. .......+..-..+...+.+...+.+++++...
T Consensus 85 v~~l~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~d~~G~~i~~~L~~~~~~~~v~~~~~~ 164 (330)
T d1neka2 85 IEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEW 164 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCBCSCBTTBCCCSSBCEEECTTSSSEEEECCTTCHHHHHHHHHHHHHHHTTCEEECSE
T ss_pred HHHHHHHhHHHHHHHhhccccccccCCCceehhccCcccccccCcccccccccCCccHHHHHHHHHHHHHhcCCeEEEEE
Confidence 333333334455556666655432110 000 000000000011122223344456788887765
Q ss_pred EE-E--Ee-CCE----EEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 144 GK-I--VG-PNE----VEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 144 ~~-~--i~-~~~----~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
.. . .+ ... +.....+|+...+.++.+|+|||...
T Consensus 165 ~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~ 206 (330)
T d1neka2 165 YALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (330)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCG
T ss_pred EEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCcc
Confidence 22 1 22 222 22334667778899999999999653
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.83 E-value=7.4e-10 Score=95.60 Aligned_cols=112 Identities=19% Similarity=0.287 Sum_probs=70.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCC--CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g--~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
++|||||||++|+.+|..|++.+ .+|+|+|+ .+.. ..+.......... .
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~------~~~~---------~~~~~~~~~~~~~--------------~ 53 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEP------NTDY---------YTCYLSNEVIGGD--------------R 53 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS------CSCE---------ECSTTHHHHHHTS--------------S
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEEC------CCcc---------ccccccccccchh--------------h
Confidence 47999999999999999999966 58999994 2111 0011110000000 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
........ .......++.+..+....++.....+...+++ .++||+||+|||..|+.+.
T Consensus 54 ~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~i~~D~li~atG~~~~~~~ 112 (186)
T d1fcda1 54 KLESIKHG-------------------YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGA--EFGYDRCVVAPGIELIYDK 112 (186)
T ss_dssp CGGGGEEC-------------------SHHHHTTTEEEECCCEEECCTTTTEEEETTSC--EEECSEEEECCCEEECCTT
T ss_pred hhhhhhhh-------------------hhhccccceeEeeeeeEeeeeccceeecccce--eeccceEEEEeccccchhh
Confidence 00000000 01123457888888777776666666666655 8999999999999998887
Q ss_pred CCCC
Q 042564 182 IPGQ 185 (498)
Q Consensus 182 i~g~ 185 (498)
+++.
T Consensus 113 i~~~ 116 (186)
T d1fcda1 113 IEQR 116 (186)
T ss_dssp STEE
T ss_pred hhhh
Confidence 7654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.78 E-value=1.4e-08 Score=82.37 Aligned_cols=93 Identities=24% Similarity=0.285 Sum_probs=64.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
..+++|||||+.|+.+|..|++.|.+|+|+|+ .+ .+ +|
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~------~~---~~---------l~------------------------ 72 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDT------AA---RV---------LE------------------------ 72 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECS------SS---ST---------TT------------------------
T ss_pred CCEEEEECCchHHHHHHHHHHhhCcceeeeee------cc---cc---------cc------------------------
Confidence 46899999999999999999999999999993 11 10 00
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe----CCE-EEEEeCCCceEEEEcCeEEEcCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG----PNE-VEVTQLDGTKLSYSAKHILIATG 174 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~----~~~-~~v~~~~g~~~~~~~d~liiAtG 174 (498)
..++ . .+...+.+.+++.||+++.+. +..++ ... ..+.+++|+ .+.+|.+|+|+|
T Consensus 73 ---~~~~-~-----------~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~--~i~~D~vi~a~G 133 (133)
T d1q1ra2 73 ---RVTA-P-----------PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGT--RLPADLVIAGIG 133 (133)
T ss_dssp ---TTSC-H-----------HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSC--EEECSEEEECCC
T ss_pred ---cccc-h-----------hhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCC--EEECCEEEEeeC
Confidence 0000 0 112233455677899999886 44442 222 346677876 899999999998
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=4.5e-08 Score=78.38 Aligned_cols=92 Identities=21% Similarity=0.190 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVI 278 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~ 278 (498)
..|+|+|||+|.+|+|.|..|.+...+|++++|.+.+- .++...+ +..+..+|++++++++.++..+++. ..++
T Consensus 29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~--~~~~~~~---~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~ 103 (126)
T d1fl2a2 29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--ADQVLQD---KLRSLKNVDIILNAQTTEVKGDGSKVVGLE 103 (126)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--SCHHHHH---HHHTCTTEEEESSEEEEEEEESSSSEEEEE
T ss_pred CCceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc--ccccccc---ccccccceeEEcCcceEEEEccccceeeEE
Confidence 46899999999999999999999999999999987642 2343332 2223457999999999999987554 3454
Q ss_pred EC---CCe--EEEcCEEEEecCC
Q 042564 279 TD---HGE--EIVADVVLFATGR 296 (498)
Q Consensus 279 ~~---~g~--~i~~D~vi~a~G~ 296 (498)
+. +|+ ++++|.+++++|.
T Consensus 104 l~~~~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 104 YRDRVSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp EEETTTCCEEEEECSEEEECSCE
T ss_pred EEECCCCCEEEEECCEEEEEeCC
Confidence 43 343 6999999999883
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.73 E-value=2.1e-08 Score=87.21 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||+||||||+|+.||+.|++.|.+|+|+|+
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~ 36 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEG 36 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEe
Confidence 58999999999999999999999999999994
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=4.6e-08 Score=84.19 Aligned_cols=42 Identities=29% Similarity=0.548 Sum_probs=36.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG 75 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g 75 (498)
.|||+||||||+|+.||+.+++.|.+|+|||+ ..||+|.+..
T Consensus 1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~-----------~~gg~~~~~~ 42 (184)
T d1fl2a1 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE-----------RFGGQILDTV 42 (184)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS-----------STTGGGGGCC
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEE-----------ecCCcccccc
Confidence 38999999999999999999999999999993 2577776543
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.72 E-value=3e-09 Score=98.58 Aligned_cols=49 Identities=31% Similarity=0.352 Sum_probs=42.9
Q ss_pred CCccEEEECCChhHHHHHHHHHh-CCCcEEEEccCCCCCCCCcCCCccccccccCchhh
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN-FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPK 79 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~ 79 (498)
.++||+||||||+||+||++|++ .|++|+|+|+ ...+||.|.+.+|.++
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~---------~~~~GG~~~~~g~~~~ 81 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQ---------SVSPGGGAWLGGQLFS 81 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEES---------SSSCCTTTTCCSTTCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEec---------CCCCCCceeecCEEcC
Confidence 36899999999999999999987 6999999995 4568999998888664
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.72 E-value=8.8e-08 Score=90.96 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=103.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCCC------------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELPL------------------------------------------ 237 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~l------------------------------------------ 237 (498)
|+|+|||+|++|+-+|..|.+.+ .+|+++++.+.+-
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y~ 84 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYR 84 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCCT
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccch
Confidence 79999999999999999998766 4899999987531
Q ss_pred ----------------------CCC--CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC---e---EEEc
Q 042564 238 ----------------------RGF--DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG---E---EIVA 287 (498)
Q Consensus 238 ----------------------~~~--~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g---~---~i~~ 287 (498)
+.+ -.++.+.+....+..+..++++++|++|+.++++..|++.++ + ...+
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~ 164 (335)
T d2gv8a1 85 DLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIF 164 (335)
T ss_dssp TCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEE
T ss_pred hhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEe
Confidence 000 124666676776777888999999999999988877766432 2 4569
Q ss_pred CEEEEecCCC--cCCCCCC---------cccCCceeCCCCCeEcCCCC---CCCCCCeEEecccCCCCCChHHHHHHHHH
Q 042564 288 DVVLFATGRA--PNTKRLN---------LKAVGVEVDQTGAVKVDENS---RTNVPSIWAVGDVTNRMNLTPVALMEGTC 353 (498)
Q Consensus 288 D~vi~a~G~~--p~~~~l~---------l~~~gi~~~~~g~i~vd~~~---~t~~~~iya~GD~~~~~~~~~~A~~~g~~ 353 (498)
|.||+|+|.. |+...+. ++.....+-.+|.-..+-+. ....|++..+|=..... .......|+..
T Consensus 165 d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v~-~~~~~e~Qa~~ 243 (335)
T d2gv8a1 165 DAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV-PFPTSQAQAAF 243 (335)
T ss_dssp SEEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSC-HHHHHHHHHHH
T ss_pred eEEEEcccccccceecccccCCCCcchhcccCccceeccccceeeeecccccCCCCceEEeeeEEEEe-cCCchHHHHHH
Confidence 9999999964 3433210 11111111111111111111 23678888888544433 23456788888
Q ss_pred HHHHHhCC
Q 042564 354 FAKTVFGG 361 (498)
Q Consensus 354 aa~~i~~~ 361 (498)
+++-+.|.
T Consensus 244 ~a~~~~g~ 251 (335)
T d2gv8a1 244 LARVWSGR 251 (335)
T ss_dssp HHHHHTTS
T ss_pred HHHHHcCC
Confidence 88888764
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.72 E-value=5.2e-08 Score=77.34 Aligned_cols=93 Identities=25% Similarity=0.296 Sum_probs=64.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-.|..+++.|.+|+++++ .++.
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~------~~~l--------------------------------------- 57 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEA------MDKF--------------------------------------- 57 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEES------SSSS---------------------------------------
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEe------eccc---------------------------------------
Confidence 4799999999999999999999999999993 1110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEeCC-CceEEEEcCeEEEcCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQLD-GTKLSYSAKHILIATG 174 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~~~-g~~~~~~~d~liiAtG 174 (498)
.+.+| .++...+.+.+++.|++++.++ +..+ +.+.+.++..+ +...++.+|.|++|+|
T Consensus 58 -l~~~d------------~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 58 -LPAVD------------EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp -STTSC------------HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred -CCccc------------chhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 01111 1123344566778899999986 4444 34455555433 2345799999999998
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.71 E-value=2.2e-08 Score=96.04 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=30.2
Q ss_pred CCccEEEECCChhHHHHHHHHHh----CCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN----FGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~----~g~~V~lvek 54 (498)
.++||||||||+||++||++|++ .|++|+||||
T Consensus 20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK 56 (356)
T d1jnra2 20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK 56 (356)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECS
T ss_pred EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeC
Confidence 46899999999999999999975 7999999996
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.1e-09 Score=97.27 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=40.3
Q ss_pred HHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCCC
Q 042564 132 LSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP 183 (498)
Q Consensus 132 ~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i~ 183 (498)
+++.+|+++.++ +..++.+...|.+++|+ ++.||+||+|||+.|..+.++
T Consensus 93 ~~~~gI~~~~g~~V~~id~~~~~V~l~dG~--~i~~d~lViAtG~~~~~~~l~ 143 (213)
T d1m6ia1 93 IENGGVAVLTGKKVVQLDVRDNMVKLNDGS--QITYEKCLIATGGTEPNVELA 143 (213)
T ss_dssp STTCEEEEEETCCEEEEEGGGTEEEETTSC--EEEEEEEEECCCEEEECCTTH
T ss_pred HHHCCeEEEeCCEEEEeeccCceeeeccce--eeccceEEEeeeeecchhhhh
Confidence 355789999987 77888777778888887 899999999999887665544
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.66 E-value=1.1e-07 Score=75.89 Aligned_cols=88 Identities=22% Similarity=0.228 Sum_probs=62.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+|+ .+ .+
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~------~~---~l------------------------------------ 67 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHR------GA---MF------------------------------------ 67 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECS------SS---CC------------------------------------
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEec------cc---cc------------------------------------
Confidence 4799999999999999999999999999993 11 10
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~ 175 (498)
..++. ++...+.+.+++.||+++.++ +..++.+.+. . +++ .+++|.+|+|+|.
T Consensus 68 --~~~d~------------~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~v~--~-~~~--~i~~D~vi~a~Gv 121 (122)
T d1xhca2 68 --LGLDE------------ELSNMIKDMLEETGVKFFLNSELLEANEEGVL--T-NSG--FIEGKVKICAIGI 121 (122)
T ss_dssp --TTCCH------------HHHHHHHHHHHHTTEEEECSCCEEEECSSEEE--E-TTE--EEECSCEEEECCE
T ss_pred --cCCCH------------HHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEE--e-CCC--EEECCEEEEEEEe
Confidence 00110 112223455677899999986 5566666542 2 444 7999999999994
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.65 E-value=1.4e-07 Score=74.67 Aligned_cols=91 Identities=31% Similarity=0.411 Sum_probs=63.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+|+|+ . ..+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~------~---~~il----------------------------------- 58 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEG------A---GEIL----------------------------------- 58 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEES------S---SSSS-----------------------------------
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEe------c---ceec-----------------------------------
Confidence 4899999999999999999999999999993 1 1100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEe-CCCceEEEEcCeEEEc
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQ-LDGTKLSYSAKHILIA 172 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~-~~g~~~~~~~d~liiA 172 (498)
+.+|. .+...+.+.+++.||+++.++ +..+ +.+.+.+.. .+|+..++.+|.|++.
T Consensus 59 --~~~d~------------~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 59 --SGFEK------------QMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp --TTSCH------------HHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred --ccccc------------hhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 01111 122334556777899999997 4444 345555544 4565678999999974
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.64 E-value=8.1e-08 Score=76.05 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=64.4
Q ss_pred ccEEEECCChhHHHHHHHHHh---CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 24 FDLFVIGAGSGGVRAARFSAN---FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
.+++|||||+.|+-.|..+++ .|.+|+++|+ . ..+
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~------~---~~i--------------------------------- 56 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR------G---DMI--------------------------------- 56 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES------S---SSS---------------------------------
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecc------c---ccc---------------------------------
Confidence 479999999999999987665 5889999993 1 110
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe---CCEEEEEeCCCceEEEEcCeEEEcCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG---PNEVEVTQLDGTKLSYSAKHILIATG 174 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~---~~~~~v~~~~g~~~~~~~d~liiAtG 174 (498)
.+.+|. .+...+.+.+++.||+++.++ +..+. ++...+.+++|+ .+.+|.+++|+|
T Consensus 57 ----l~~~d~------------~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~--~i~~D~Vi~a~G 116 (117)
T d1feca2 57 ----LRGFDS------------ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGA--EADYDVVMLAIG 116 (117)
T ss_dssp ----STTSCH------------HHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSC--EEEESEEEECSC
T ss_pred ----cccccc------------hhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCC--EEEcCEEEEecC
Confidence 011111 122334566788899999987 55553 335667788876 899999999998
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.64 E-value=8.4e-09 Score=96.44 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=38.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
+||+||||||++|++||.+|++.|++|+|+|+ ...+||.|.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk---------~~~iGG~~~ 41 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEK---------RNHIGGNAY 41 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECS---------SSSSSGGGC
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEEC---------CCCcccceE
Confidence 48999999999999999999999999999996 778999984
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.64 E-value=1.9e-07 Score=86.72 Aligned_cols=155 Identities=15% Similarity=0.202 Sum_probs=105.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC---------------C------CC----------------CHHHH
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL---------------R------GF----------------DDEMR 245 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l---------------~------~~----------------~~~~~ 245 (498)
+|+|||+|++|+-+|..|.+.|.+|+++++.+.+- + .. .+++.
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~~ 88 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEIL 88 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHHH
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchHH
Confidence 79999999999999999999999999999875320 0 01 13566
Q ss_pred HHHHHHHHhCCC--EEEcCccEEEEEEeC--CeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcC
Q 042564 246 AVVARNLEGRGI--NLHPRTTIKELIKSE--EGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD 321 (498)
Q Consensus 246 ~~l~~~l~~~Gv--~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd 321 (498)
+.+++..++.++ .++++++|+++..++ +...|.+.+++++.+|.||+|+|.......- .-.++++...+++...
T Consensus 89 ~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p--~~~~~~i~g~~g~~l~ 166 (298)
T d1w4xa1 89 RYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTG--ALFKIDIRGVGNVALK 166 (298)
T ss_dssp HHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTH--HHHTSEEECGGGCBHH
T ss_pred HHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCC--cccccccccCCCeeeh
Confidence 777888888888 599999999997544 3478999999999999999999964433221 1112332111112111
Q ss_pred ----------CCCCC-CCCCeEEecccCCC---CCChHHHHHHHHHHHHHHh
Q 042564 322 ----------ENSRT-NVPSIWAVGDVTNR---MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 322 ----------~~~~t-~~~~iya~GD~~~~---~~~~~~A~~~g~~aa~~i~ 359 (498)
-.+.+ +.||.|.++-.... ......+..|+..+++.|.
T Consensus 167 ~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~ 218 (298)
T d1w4xa1 167 EKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIA 218 (298)
T ss_dssp HHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hhchhhHHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHHHHH
Confidence 11222 67999998533332 2234456778888888764
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.64 E-value=1.5e-08 Score=88.69 Aligned_cols=110 Identities=18% Similarity=0.288 Sum_probs=67.0
Q ss_pred cEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCc-hhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 25 DLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGC-VPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+|+|||||++|+.+|..|++. +.+|+++|+ .+... +..| +|. ... ..
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~------~~~~~-------~~~~~~~~----~l~----------~~--- 51 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEK------GDFIS-------FLSAGMQL----YLE----------GK--- 51 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEES------SSSSS-------BCGGGHHH----HHT----------TS---
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeC------CCccc-------ccccCcch----hhc----------cc---
Confidence 599999999999999999985 568999994 11111 1111 110 000 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCC--EEEEE-eCCCceEEEEcCeEEEcCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPN--EVEVT-QLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~--~~~v~-~~~g~~~~~~~d~liiAtG~~p 177 (498)
.. ++ +.+.......+++.|++++.++ +..++.. .+++. ..+|+...+.||.+|+|+|+.|
T Consensus 52 ~~-----~~-----------~~~~~~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~ 115 (198)
T d1nhpa1 52 VK-----DV-----------NSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP 115 (198)
T ss_dssp SC-----CG-----------GGSBSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred cc-----ch-----------HHHHHhhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeeccee
Confidence 00 00 0000011234556799998876 6667654 45554 3566677899999999999887
Q ss_pred CCC
Q 042564 178 QRA 180 (498)
Q Consensus 178 ~~p 180 (498)
+.+
T Consensus 116 ~~~ 118 (198)
T d1nhpa1 116 FEL 118 (198)
T ss_dssp CCC
T ss_pred ecc
Confidence 643
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.63 E-value=1.8e-07 Score=77.45 Aligned_cols=94 Identities=24% Similarity=0.233 Sum_probs=66.2
Q ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EE
Q 042564 199 ELPKRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VK 276 (498)
Q Consensus 199 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~ 276 (498)
..+++|+|||||.+|+|+|..+.++|++ |++++|.+..-....+ .....+...++.++.+..+.++..+++. ..
T Consensus 43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~----~~~~~a~~~~~~~~~~~~~~ei~~~~~~~~~ 118 (153)
T d1gtea3 43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVP----EEVELAKEEKCEFLPFLSPRKVIVKGGRIVA 118 (153)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCH----HHHHHHHHTTCEEECSEEEEEEEEETTEEEE
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccch----hheeecccccceeEeccccEEEEecCCceEE
Confidence 3467999999999999999999999865 8888886643222222 2223345678999999888888776654 22
Q ss_pred EEE------CCC---------eEEEcCEEEEecCC
Q 042564 277 VIT------DHG---------EEIVADVVLFATGR 296 (498)
Q Consensus 277 v~~------~~g---------~~i~~D~vi~a~G~ 296 (498)
+.. ++| .+++||.||+|+|.
T Consensus 119 v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 119 VQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153 (153)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred EEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence 211 122 25899999999983
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.62 E-value=3.5e-09 Score=95.14 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=28.1
Q ss_pred ccEEEECCChhHHHHHHHHHh--CCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSAN--FGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~--~g~~V~lvek 54 (498)
.+|+|||||||||+||.+|++ .|++|+|+|+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~ 34 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEK 34 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 479999999999999999987 4789999995
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.5e-07 Score=76.62 Aligned_cols=92 Identities=21% Similarity=0.206 Sum_probs=65.6
Q ss_pred ccEEEECCChhHHHHHHHHHh----CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 24 FDLFVIGAGSGGVRAARFSAN----FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~----~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
.+++|||||+.|+-+|..|++ .|.+|+++++ .+ .+ ++
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~------~~---~~---------l~--------------------- 78 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFP------EK---GN---------MG--------------------- 78 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECS------SS---ST---------TT---------------------
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecc------cc---cC---------Cc---------------------
Confidence 479999999999999988864 6899999993 11 10 00
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEeCCCceEEEEcCeEEEcCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQLDGTKLSYSAKHILIATG 174 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~~~g~~~~~~~d~liiAtG 174 (498)
..++ ..+.....+.+++.||+++.++ +..+ +++.+.+.+++|+ .+.+|.+|+|+|
T Consensus 79 ------~~~~------------~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~--~i~aD~Vi~A~G 136 (137)
T d1m6ia2 79 ------KILP------------EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGR--KVETDHIVAAVG 136 (137)
T ss_dssp ------TTSC------------HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSC--EEEESEEEECCC
T ss_pred ------ccCC------------HHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCC--EEECCEEEEeec
Confidence 0011 0112233456678899999986 4444 5677888888886 899999999998
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.57 E-value=6.3e-08 Score=77.42 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=64.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-.|..+++.|.+|+++|+ . ..+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~------~---~~i------------------------------------ 61 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEM------M---DGL------------------------------------ 61 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECS------S---SSS------------------------------------
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEe------e---ccc------------------------------------
Confidence 4799999999999999999999999999993 1 110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEe--CCCceEEEEcCeEEEcCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQ--LDGTKLSYSAKHILIATG 174 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~--~~g~~~~~~~d~liiAtG 174 (498)
.+.+|. .+...+.+.+++.|++++.++ +..+ +.+.+.+.. .+|..+.+++|.|++|+|
T Consensus 62 -l~~~d~------------~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 62 -MQGADR------------DLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp -STTSCH------------HHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred -cccchh------------hHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence 001111 123334566777899999887 3333 345555543 444445799999999998
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.56 E-value=2.5e-07 Score=72.92 Aligned_cols=89 Identities=12% Similarity=0.205 Sum_probs=63.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+|+ . ..+ +
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~------~---~~i---------l-------------------------- 58 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFAR------G---NRI---------L-------------------------- 58 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECS------S---SSS---------C--------------------------
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeeeh------h---ccc---------c--------------------------
Confidence 4799999999999999999999999999993 1 110 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE---eCCEEEEEeCCCceEEE-EcCeEEEc
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV---GPNEVEVTQLDGTKLSY-SAKHILIA 172 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i---~~~~~~v~~~~g~~~~~-~~d~liiA 172 (498)
+.+| ..+...+.+.+++.||+++.++ +..+ +.+.+.+.+++|+ .+ .+|.|++|
T Consensus 59 --~~~d------------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~--~~~~~D~Vi~A 116 (117)
T d1onfa2 59 --RKFD------------ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGR--IYEHFDHVIYC 116 (117)
T ss_dssp --TTSC------------HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSC--EEEEESEEEEC
T ss_pred --cccc------------HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCC--EEEeCCEEEEe
Confidence 0111 1122334456677899999886 4444 3456788888886 44 57999998
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.50 E-value=2e-08 Score=86.53 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=36.2
Q ss_pred HhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 133 SNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 133 ~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
...+++++.+. +..++.....+.+.+|+ ++.||.+++|+|..|+..
T Consensus 66 ~~~~i~~~~~~~v~~i~~~~~~~~~~~g~--~~~~D~vi~a~G~~p~~~ 112 (183)
T d1d7ya1 66 RAPEVEWLLGVTAQSFDPQAHTVALSDGR--TLPYGTLVLATGAAPRAV 112 (183)
T ss_dssp GSTTCEEEETCCEEEEETTTTEEEETTSC--EEECSEEEECCCEEECCE
T ss_pred hcCCeEEEEeccccccccccceeEecCCc--EeeeeeEEEEEEEEcccc
Confidence 34589988875 66777776667777876 899999999999988654
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=3.9e-08 Score=93.75 Aligned_cols=42 Identities=33% Similarity=0.493 Sum_probs=36.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTC 71 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~ 71 (498)
.+..+|||||||+|||+||++|++.|++|+|+|+ ...+||.|
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa---------~~r~GGr~ 44 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEA---------RDRVGGRV 44 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECS---------SSSSBTTC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeC---------CCCCcccE
Confidence 3457899999999999999999999999999995 55677755
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.50 E-value=3e-07 Score=73.08 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+++|||||+.|+-.|..|++.|.+|++++
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~ 52 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLV 52 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEee
Confidence 589999999999999999999999999999
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.49 E-value=2.6e-07 Score=73.59 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=61.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+++|+ .++. +|
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~------~~~~------------l~------------------------- 67 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI------LDRP------------LG------------------------- 67 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEES------SSST------------TT-------------------------
T ss_pred CEEEEECChHHHHHHHHHhhccceEEEEEEe------cCcc------------cc-------------------------
Confidence 5899999999999999999999999999993 1110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCC-EEEEEeCCCceEEEEcCeEEEc
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPN-EVEVTQLDGTKLSYSAKHILIA 172 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~-~~~v~~~~g~~~~~~~d~liiA 172 (498)
..++ ..+...+.+.+++.|++++.++ +..++.+ .+.....+|+ ++.+|.+|+|
T Consensus 68 --~~~d------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~--~i~~D~vi~a 122 (123)
T d1nhpa2 68 --VYLD------------KEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKN--AYDADLVVVA 122 (123)
T ss_dssp --TTCC------------HHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSC--EEECSEEEEC
T ss_pred --cccc------------hhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCC--EEECCEEEEE
Confidence 0011 0122334556777899999997 5555433 3332244655 8999999997
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.49 E-value=5e-08 Score=90.63 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||+||||||+|+++|+.|++.|.+|+|+||
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~ 33 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeC
Confidence 47999999999999999999999999999994
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.49 E-value=9.6e-07 Score=70.05 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+++|||||+.|+-.|..+++.|.+|+|++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~ 50 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMV 50 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEE
Confidence 379999999999999999999999999999
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=5.2e-07 Score=72.04 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=29.5
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+++|||||+.|+-+|..+++.|.+|+++++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~ 53 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIR 53 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEee
Confidence 5899999999999999999999999999993
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.45 E-value=8e-07 Score=71.10 Aligned_cols=90 Identities=23% Similarity=0.282 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC--eE-E
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEE--GV-K 276 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~~-~ 276 (498)
..|+|+|||+|.+++|.|.+|++...+|++++|.+.+- -++... .+..+..+|++++++++.++..++. .+ .
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r--a~~~~~---~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~ 107 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR--ASKIMQ---QRALSNPKIDVIWNSSVVEAYGDGERDVLGG 107 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC--SCHHHH---HHHHTCTTEEEECSEEEEEEEESSSSSSEEE
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc--cchhhh---hccccCCceEEEeccEEEEEEccCCcccEEE
Confidence 46899999999999999999999999999999988642 244333 3334456799999999999998754 22 3
Q ss_pred EEE---CCC--eEEEcCEEEEec
Q 042564 277 VIT---DHG--EEIVADVVLFAT 294 (498)
Q Consensus 277 v~~---~~g--~~i~~D~vi~a~ 294 (498)
+.+ .++ +++++|-+++++
T Consensus 108 v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 108 LKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp EEEEETTTCCEEEEECSEEEECS
T ss_pred EEEEECCCCCEEEEECCEEEEEC
Confidence 333 233 479999999874
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.44 E-value=7e-07 Score=70.37 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=63.0
Q ss_pred ccEEEECCChhHHHHHHHHHh---CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 24 FDLFVIGAGSGGVRAARFSAN---FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
.+++|||||+.|+-+|..+.+ .+.+|+|+|+ .+ .+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~------~~---~i--------------------------------- 58 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYR------GE---MI--------------------------------- 58 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEES------SS---SS---------------------------------
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEec------cc---hh---------------------------------
Confidence 479999999999999987776 4567999993 11 10
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe---CCEEEEEeCCCceEEEEcCeEEEcC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG---PNEVEVTQLDGTKLSYSAKHILIAT 173 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~---~~~~~v~~~~g~~~~~~~d~liiAt 173 (498)
.+.+| ..+...+.+.+++.||+++.++ +..++ ++.+.+.+++|+ ++++|.|++|.
T Consensus 59 ----L~~~d------------~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~--~i~~D~Vi~AI 117 (117)
T d1aoga2 59 ----LRGFD------------HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGK--KMDFDLVMMAI 117 (117)
T ss_dssp ----STTSC------------HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSC--EEEESEEEECS
T ss_pred ----hcccc------------hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCc--EEEeCEEEEeC
Confidence 00111 1122334566778899999997 55553 346778888886 79999999983
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.43 E-value=7.6e-08 Score=90.40 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=37.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
+++|+|||||++|++||..|++.|++|+|+|+ ...+||.|.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk---------~~~iGG~~~ 42 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQ---------RDHIGGNSY 42 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEES---------SSSSSGGGC
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEEC---------CCCCcCeee
Confidence 46899999999999999999999999999997 678899873
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.43 E-value=8e-08 Score=81.25 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=26.4
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+|+|||||++|+.+|..|++ +.+|+|+++
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~ 30 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDK 30 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECS
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEec
Confidence 69999999999999999976 779999994
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.42 E-value=4.8e-07 Score=72.03 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=63.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||..|+-+|..+++.|.+|+|+++ .+..
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~------~~~~--------------------------------------- 60 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEF------ASEI--------------------------------------- 60 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECS------SSSS---------------------------------------
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEE------cccc---------------------------------------
Confidence 4799999999999999999999999999993 1110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CE--EEEEe-CCCceEEEEcCeEEEcC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NE--VEVTQ-LDGTKLSYSAKHILIAT 173 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~--~~v~~-~~g~~~~~~~d~liiAt 173 (498)
.+.++ ..+...+.+.+++.||+++.++ +..++. +. +.+.. .+|+...+++|.+++|.
T Consensus 61 -l~~~d------------~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 61 -VPTMD------------AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp -STTSC------------HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred -Cchhh------------hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 01111 1122334556778899999987 445543 33 34444 34555679999999883
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=1.1e-06 Score=69.71 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+++|||||+.|+-+|..|++.|.+|+|+|
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~ 53 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVE 53 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEE
Confidence 479999999999999999999999999999
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.40 E-value=3.7e-08 Score=90.01 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|+||||||+|+++|..|++.|++|+|+||
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er 35 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDAGVDVDVYER 35 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeC
Confidence 4799999999999999999999999999995
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.39 E-value=2e-06 Score=77.95 Aligned_cols=100 Identities=24% Similarity=0.267 Sum_probs=79.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC------CCHHHHHHH--------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG------FDDEMRAVV-------------------------- 248 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~------~~~~~~~~l-------------------------- 248 (498)
.++|+|||+|+.|+-+|..|++.|.+|+++++.+.+... +.+.....+
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 83 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCc
Confidence 478999999999999999999999999999987654322 233322221
Q ss_pred ------------------HHHH-HhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 249 ------------------ARNL-EGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 249 ------------------~~~l-~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
...+ ...++.+++++.+.++...++.+.++++||+++.+|.+|.|.|..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~~ 154 (265)
T d2voua1 84 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVV 154 (265)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHH
T ss_pred eecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccccc
Confidence 1122 234788999999999998888899999999999999999999976544
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.31 E-value=1.1e-05 Score=70.48 Aligned_cols=93 Identities=26% Similarity=0.285 Sum_probs=68.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-C------------CCC-----CC------HHHHHHHHHHHHh-CCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-P------------LRG-----FD------DEMRAVVARNLEG-RGI 257 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-~------------l~~-----~~------~~~~~~l~~~l~~-~Gv 257 (498)
.|+|||+|+.|+|.|...++.|.++.+++.+.. + .+. .+ ......+++.+.. .++
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL 83 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL 83 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence 589999999999999999999999999986421 0 000 00 1122334444443 488
Q ss_pred EEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCC
Q 042564 258 NLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.++.. +|.++..+++. ..|.+.+|..+.|..||++||.
T Consensus 84 ~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGT 122 (230)
T d2cula1 84 HLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGS 122 (230)
T ss_dssp EEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred HHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCc
Confidence 88866 67777766665 5688999999999999999995
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.31 E-value=2.9e-06 Score=79.47 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=68.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC---------------------------------------CCCH-
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR---------------------------------------GFDD- 242 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~---------------------------------------~~~~- 242 (498)
.|+|||+|..|+-.|..+++.|.+|.++++.+..-. ..++
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~~ 100 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIK 100 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccchh
Confidence 699999999999999999999999999998652100 0001
Q ss_pred ------------------------------------------------HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe
Q 042564 243 ------------------------------------------------EMRAVVARNLEGRGINLHPRTTIKELIKSEEG 274 (498)
Q Consensus 243 ------------------------------------------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~ 274 (498)
.+...+.+.+++.|+++++++.+.++..++++
T Consensus 101 lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g 180 (317)
T d1qo8a2 101 LVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH 180 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS
T ss_pred HHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeecccc
Confidence 12333566777899999999999998665543
Q ss_pred --E--EEEECCCe--EEEcCEEEEecCC
Q 042564 275 --V--KVITDHGE--EIVADVVLFATGR 296 (498)
Q Consensus 275 --~--~v~~~~g~--~i~~D~vi~a~G~ 296 (498)
. .+...+++ .+.++.||+|||-
T Consensus 181 ~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG 208 (317)
T d1qo8a2 181 SVVGAVVHGKHTGYYMIGAKSVVLATGG 208 (317)
T ss_dssp BEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred cceeeEeecccceEEEEeccceEEeccc
Confidence 2 33334554 4789999999994
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.31 E-value=6.9e-06 Score=76.35 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=30.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.|+|||+|..|+-.|..+++.|.+|.++++.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 79999999999999999999999999999865
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.28 E-value=3.5e-07 Score=82.95 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=31.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|..+++|||||||++|+++|+.|+++|.+|+|+||
T Consensus 3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier 37 (268)
T d1c0pa1 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILAR 37 (268)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeC
Confidence 34457899999999999999999999999999994
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=98.26 E-value=2.5e-07 Score=88.91 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=33.3
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|+.+|||||||+|+||+.+|.+|++.|++|+|+|+
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 67789999999999999999999999999999994
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.24 E-value=3e-07 Score=86.12 Aligned_cols=48 Identities=33% Similarity=0.334 Sum_probs=40.3
Q ss_pred CCccEEEECCChhHHHHHHHHHh--CCCcEEEEccCCCCCCCCcCCCccccccccCchh
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVP 78 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p 78 (498)
.++||+||||||+|++||+.|++ .|++|+|+|+ ...+||.|...++.+
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~ 98 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIES---------SVAPGGGSWLGGQLF 98 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECS---------SSSCCTTTTCCGGGC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEc---------CCCCcceeEecCEeC
Confidence 36899999999999999999996 5999999995 456788887666654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.18 E-value=6.1e-07 Score=77.67 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=29.6
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC-cEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA-KVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lvek 54 (498)
..+|+||||||+||+||..|++.|+ +|+|+|+
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~ 36 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEK 36 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEe
Confidence 3589999999999999999999998 5999995
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.15 E-value=2.4e-07 Score=79.55 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=28.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..||+|||||++|+.+|..|++.|.+|++++
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~ 33 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRL 33 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence 3589999999999999999999999988887
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.13 E-value=2.5e-06 Score=65.82 Aligned_cols=76 Identities=11% Similarity=0.093 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT 279 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~ 279 (498)
..|+|+|||+|.+|+++|..|+..+.+++++.+.+.... ...++... ..+.++..++ ..+.+
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~--------------~~~~~~~~--~~i~~~~~~~--~~v~~ 92 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDI--------------QNESLQQV--PEITKFDPTT--REIYL 92 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSC--------------BCSSEEEE--CCEEEEETTT--TEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCcccc--------------ccccceec--CCeeEEecCC--CEEEE
Confidence 468999999999999999999999998887777654321 11122222 3456664433 35888
Q ss_pred CCCeEEE-cCEEEEe
Q 042564 280 DHGEEIV-ADVVLFA 293 (498)
Q Consensus 280 ~~g~~i~-~D~vi~a 293 (498)
.+|+.+. +|.||+|
T Consensus 93 ~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 93 KGGKVLSNIDRVIYC 107 (107)
T ss_dssp TTTEEECCCSEEEEC
T ss_pred cCCCEEeCCCEEEEC
Confidence 9999876 7999987
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.08 E-value=2.7e-05 Score=70.86 Aligned_cols=151 Identities=16% Similarity=0.119 Sum_probs=100.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCCCCCC-----CCHHHHHH---------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELPLRG-----FDDEMRAV--------------------------- 247 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~l~~-----~~~~~~~~--------------------------- 247 (498)
|=+|+|||+|+.|+-+|..|++.|. +|+++++.+.+... +.+.....
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 80 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence 3479999999999999999999996 89999998764321 12221111
Q ss_pred -----------------------------HHH--HHHhCCCEEEcCccEEEEEEeCCeEEEEECCC----eEEEcCEEEE
Q 042564 248 -----------------------------VAR--NLEGRGINLHPRTTIKELIKSEEGVKVITDHG----EEIVADVVLF 292 (498)
Q Consensus 248 -----------------------------l~~--~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g----~~i~~D~vi~ 292 (498)
+.. .....++.+.+++.++.+...++++.+.+.++ +++.+|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ 160 (288)
T d3c96a1 81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVG 160 (288)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEE
T ss_pred CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeec
Confidence 111 12235888999999999998888888877655 4789999999
Q ss_pred ecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC-----CCChHHHHHHHHHHHHHHh
Q 042564 293 ATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR-----MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 293 a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~-----~~~~~~A~~~g~~aa~~i~ 359 (498)
|-|.+...... . .................++..+||.+.. ..-...|+..+..++..+.
T Consensus 161 ADG~~S~vr~~-~-------~~~~~~~~~~~~~~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~ 224 (288)
T d3c96a1 161 ADGIHSAVRAH-L-------HPDQRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALA 224 (288)
T ss_dssp CCCTTCHHHHH-H-------CTTCCCCCCCCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHH
T ss_pred cCCccceeeee-e-------ccccccccccccccccCcceecccccceeCCccccchhhhhhhHHHHHHHHh
Confidence 99986543211 0 0000011111122355678999999864 1224567788888887765
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.08 E-value=5.1e-06 Score=73.77 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=46.1
Q ss_pred CCCCCCCCCCc----ccChHHHh-cc-ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 177 AQRAPIPGQEL----AITSDEAL-SL-EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 177 p~~p~i~g~~~----~~~~~~~~-~l-~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
|++|.+||.+. ++++.++. .. .-..|+|+|||+|.+|+++|..+...+.+++++.+...
T Consensus 2 P~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~ 66 (235)
T d1w4xa2 2 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH 66 (235)
T ss_dssp CCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence 88999999864 34455542 22 23469999999999999999999999999888876653
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.02 E-value=3.2e-05 Score=63.92 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=26.6
Q ss_pred cEEEE--CCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVI--GAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvII--GgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.++|| |||..|+.+|..|++.|.+|+||+
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~ 71 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVS 71 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEe
Confidence 45555 999999999999999999999999
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=97.94 E-value=3e-05 Score=70.03 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=71.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC--------------------------------------CCCH-H
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR--------------------------------------GFDD-E 243 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~--------------------------------------~~~~-~ 243 (498)
.++|||+|+.|+++|..++++|.+|+++++.+.+.. ..+. .
T Consensus 44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (261)
T d1mo9a1 44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE 123 (261)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence 699999999999999999999999999998765310 0111 1
Q ss_pred HHHH------------HHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCce
Q 042564 244 MRAV------------VARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVE 311 (498)
Q Consensus 244 ~~~~------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~ 311 (498)
.... ..+.+...++....+....-+ +.. .+. .+|++++||.|++|+|.+|++..+...+..+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--d~~--~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~ 198 (261)
T d1mo9a1 124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVI--DNH--TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPRSAE 198 (261)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEE--ETT--EEE-ETTEEEEBSCEEECCCEECCCCCSTCEECCHH
T ss_pred HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEe--eec--ccc-cccceEeeeeeeeccCCCCCcCcccccccccc
Confidence 1111 111222333333333222211 111 122 36778999999999999999998765555555
Q ss_pred eCCCCCeEcCCC
Q 042564 312 VDQTGAVKVDEN 323 (498)
Q Consensus 312 ~~~~g~i~vd~~ 323 (498)
+++.-.+.+|+.
T Consensus 199 l~~~~Gl~~~~~ 210 (261)
T d1mo9a1 199 LAKILGLDLGPK 210 (261)
T ss_dssp HHHHHTCCBCTT
T ss_pred cccceeeeeccC
Confidence 444334666654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.88 E-value=5e-06 Score=75.93 Aligned_cols=31 Identities=35% Similarity=0.532 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lvek 54 (498)
.||+||||||||+++|+.|++.|. +|+|+|+
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er 33 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLES 33 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 589999999999999999999996 9999995
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=3.1e-05 Score=68.19 Aligned_cols=57 Identities=28% Similarity=0.319 Sum_probs=40.8
Q ss_pred CCCCCCCCc--ccChHHHhccc------------cCCCeEEEEcCCHHHHHHHHHHHHC--------------------C
Q 042564 179 RAPIPGQEL--AITSDEALSLE------------ELPKRAVVLGGGYIAVEFASIWRGM--------------------G 224 (498)
Q Consensus 179 ~p~i~g~~~--~~~~~~~~~l~------------~~~~~v~ViG~G~~g~e~a~~l~~~--------------------g 224 (498)
..+|||.+. ++...++..+. ...++|+|||+|.+|+++|..+.+. |
T Consensus 3 ~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g 82 (225)
T d1cjca1 3 ALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSR 82 (225)
T ss_dssp CCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCC
T ss_pred CCCCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccC
Confidence 346777643 55555554321 1258999999999999999998873 4
Q ss_pred -CcEEEEeeCCC
Q 042564 225 -STVDLLFRKEL 235 (498)
Q Consensus 225 -~~V~lv~~~~~ 235 (498)
.+|+++.|...
T Consensus 83 ~~~V~iv~RRg~ 94 (225)
T d1cjca1 83 VKTVWIVGRRGP 94 (225)
T ss_dssp CCEEEEECSSCG
T ss_pred CCeEEEEEEcCh
Confidence 47999988764
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.86 E-value=4.9e-06 Score=78.82 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=30.1
Q ss_pred CCccEEEECCChhHHHHHHHHH-----hCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSA-----NFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~-----~~g~~V~lvek 54 (498)
..|||+||||||+|+++|..|+ +.|++|+|+|+
T Consensus 6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr 43 (360)
T d1pn0a1 6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK 43 (360)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcC
Confidence 3599999999999999999996 47999999995
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=0.00016 Score=66.89 Aligned_cols=90 Identities=23% Similarity=0.363 Sum_probs=63.0
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeE-EEE---ECCCe--EEEcCEEEEecCC-----CcCCCCCC--------cccCCc
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGV-KVI---TDHGE--EIVADVVLFATGR-----APNTKRLN--------LKAVGV 310 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~---~~~g~--~i~~D~vi~a~G~-----~p~~~~l~--------l~~~gi 310 (498)
+..+..+|+++.++.+.++..+++.+ .+. ..+|+ .+.++.||+|||- ..++.... ...+|.
T Consensus 143 ~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aGa 222 (311)
T d1kf6a2 143 TSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGV 222 (311)
T ss_dssp HHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTC
T ss_pred HHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhccc
Confidence 33444689999999999998887752 222 35676 4679999999983 22221111 123455
Q ss_pred eeCCCCCeEcCCCCCCCCCCeEEecccCC
Q 042564 311 EVDQTGAVKVDENSRTNVPSIWAVGDVTN 339 (498)
Q Consensus 311 ~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 339 (498)
++.+-.+|.++++..+..+++|+.+++..
T Consensus 223 ~l~dme~iq~~p~~~~~~~~~~~~~~~~~ 251 (311)
T d1kf6a2 223 PLRDMGGIETDQNCETRIKGLFAVGECSS 251 (311)
T ss_dssp CEESCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred ceeecccccccccchhcccCCCcCcceee
Confidence 55555689999999999999999999874
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.78 E-value=0.00011 Score=65.40 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=31.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.|+|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~ 40 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY 40 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence 5899999999999999999999999999998754
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.78 E-value=6.9e-06 Score=78.52 Aligned_cols=33 Identities=33% Similarity=0.379 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||||||+|++|+.+|.+|++.|++|+|+|+
T Consensus 6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa 38 (370)
T d3coxa1 6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEM 38 (370)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 369999999999999999999999999999995
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=5.5e-05 Score=62.80 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=34.7
Q ss_pred HHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC
Q 042564 130 RLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 130 ~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~ 175 (498)
..++..++.++.+. +..++++.+.+.. +|....+.+|.||+|+|.
T Consensus 116 ~~~~~~gv~~~~~~~v~~i~~~gv~~~~-~g~e~~i~aD~Vv~A~Gq 161 (162)
T d1ps9a2 116 TTLLSRGVKMIPGVSYQKIDDDGLHVVI-NGETQVLAVDNVVICAGQ 161 (162)
T ss_dssp HHHHHTTCEEECSCEEEEEETTEEEEEE-TTEEEEECCSEEEECCCE
T ss_pred HHHhhCCeEEEeeeEEEEEcCCCCEEec-CCeEEEEECCEEEECCCC
Confidence 34566789998876 5578888877765 556678999999999993
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.69 E-value=1.3e-05 Score=76.33 Aligned_cols=33 Identities=36% Similarity=0.552 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccC
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELP 55 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~ 55 (498)
.||+||||||+||+.+|.+|++.|.+|+|+|+.
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG 34 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG 34 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence 599999999999999999999999999999954
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.67 E-value=1.3e-05 Score=76.28 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccC
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELP 55 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~ 55 (498)
.||||||+|++|+.+|.+|++.|++|+|+|+.
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence 59999999999999999999999999999953
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=8.5e-05 Score=69.47 Aligned_cols=32 Identities=31% Similarity=0.273 Sum_probs=29.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.|+|||+|..|+-.|..+.+.|.+|.++++.+
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~ 40 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 68999999999999999999999999998754
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=0.00012 Score=63.76 Aligned_cols=57 Identities=30% Similarity=0.424 Sum_probs=39.5
Q ss_pred CCCCCCCCc--ccChHHHhcc------------ccCCCeEEEEcCCHHHHHHHHHHH--------------------HCC
Q 042564 179 RAPIPGQEL--AITSDEALSL------------EELPKRAVVLGGGYIAVEFASIWR--------------------GMG 224 (498)
Q Consensus 179 ~p~i~g~~~--~~~~~~~~~l------------~~~~~~v~ViG~G~~g~e~a~~l~--------------------~~g 224 (498)
..+|||.+. ++...++..+ ....++|+|||+|.+|+++|..+. +.|
T Consensus 3 ~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~ 82 (216)
T d1lqta1 3 MLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRG 82 (216)
T ss_dssp CCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCC
T ss_pred CCCCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcC
Confidence 346777643 5555555431 112589999999999999998876 445
Q ss_pred C-cEEEEeeCCC
Q 042564 225 S-TVDLLFRKEL 235 (498)
Q Consensus 225 ~-~V~lv~~~~~ 235 (498)
. +|+++.|...
T Consensus 83 ~~~V~iv~RRg~ 94 (216)
T d1lqta1 83 IQEVVIVGRRGP 94 (216)
T ss_dssp CCEEEEECSSCG
T ss_pred CceEEEEEECCh
Confidence 4 6999988653
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.63 E-value=4.5e-05 Score=66.75 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=62.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-------------------------------------CC----
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-------------------------------------FD---- 241 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-------------------------------------~~---- 241 (498)
.|+|||+|+.|+++|..++++|.+|+++++.+.+-.. ..
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAM 84 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHH
Confidence 6999999999999999999999999999987653110 00
Q ss_pred --------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEE--ECCCeEEEcCEEEEecCCCcC
Q 042564 242 --------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVI--TDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 --------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~--~~~g~~i~~D~vi~a~G~~p~ 299 (498)
..+.+.+...++..+|+++..... +. ........ ..++..+.+|.||+|||.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~-~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~ 149 (221)
T d1dxla1 85 MGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK--FV-SPSEISVDTIEGENTVVKGKHIIIATGSDVK 149 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE--EE-ETTEEEECCSSSCCEEEECSEEEECCCEEEC
T ss_pred HHHHHHHHHHHhhHHHHhhhcCCeEEEEeccc--cc-cccccccccccccccccccceEEEeECCCcc
Confidence 012233445566778887755321 11 22222222 234457899999999999875
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.62 E-value=7.4e-05 Score=65.88 Aligned_cols=91 Identities=11% Similarity=0.126 Sum_probs=64.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCC-------CC---CCHHHHHHHHHHHHhCCCEEEcCccEEEEEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPL-------RG---FDDEMRAVVARNLEGRGINLHPRTTIKELIK 270 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l-------~~---~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 270 (498)
+|+|||+|+.|+.+|..|++. |.+|+++++.+.+. +. ....+.......+.+.|++++.++.|..
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--- 79 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR--- 79 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT---
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc---
Confidence 799999999999999999764 77999999988652 11 2334556667778888999998876621
Q ss_pred eCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 271 SEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 271 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+ +...+ -.-.+|.+++|+|..+....
T Consensus 80 --~---~~~~~-l~~~~d~v~~a~Ga~~~~~~ 105 (230)
T d1cjca2 80 --D---VTVQE-LQDAYHAVVLSYGAEDKSRP 105 (230)
T ss_dssp --T---BCHHH-HHHHSSEEEECCCCCEECCC
T ss_pred --c---ccHHH-HHhhhceEEEEeeccccccc
Confidence 1 00000 01247999999998765543
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00017 Score=62.84 Aligned_cols=93 Identities=22% Similarity=0.256 Sum_probs=64.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC----------------------------C---------CCC-H--
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL----------------------------R---------GFD-D-- 242 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l----------------------------~---------~~~-~-- 242 (498)
.|+|||+|+.|+++|..++++|.+|.++++.. +- . .++ +
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 82 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL 82 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence 58999999999999999999999999999853 10 0 000 0
Q ss_pred ---------HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 243 ---------EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 243 ---------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+...+...+++.||++......... .. ....+++.+.++.+++|+|..|....
T Consensus 83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~---~~---~~~~~~~~~~~~~~iiatG~~p~ip~ 145 (217)
T d1gesa1 83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD---AK---TLEVNGETITADHILIATGGRPSHPR 145 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE---TT---EEEETTEEEEEEEEEECCCEEECCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccce---ee---eecCCCceeeeeeeeeecCccccCCC
Confidence 11222344567778888766443322 11 12235678999999999999988764
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.50 E-value=2e-05 Score=74.64 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+||+||||||+||+.+|.+|++. .+|+|+|+
T Consensus 24 ~~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEa 56 (351)
T d1ju2a1 24 EGSYDYVIVGGGTSGCPLAATLSEK-YKVLVLER 56 (351)
T ss_dssp EEEEEEEEECCSTTHHHHHHHHTTT-SCEEEECS
T ss_pred cCCccEEEECccHHHHHHHHHhcCC-CCEEEEec
Confidence 3469999999999999999999986 99999993
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.48 E-value=3.1e-05 Score=74.40 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=31.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCC-CcEEEEccC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFG-AKVGICELP 55 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek~ 55 (498)
+.||+||||||+||+..|.+|++.+ .+|+|+|+.
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG 57 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKG 57 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESS
T ss_pred CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 3599999999999999999999977 799999954
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.45 E-value=1.7e-05 Score=70.47 Aligned_cols=143 Identities=20% Similarity=0.172 Sum_probs=78.0
Q ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCC-----------HHHHHHHHHHHHhCCCEEEcCccEEE
Q 042564 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFD-----------DEMRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 199 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~-----------~~~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
..+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+. ..........+.+.+..... + .
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 122 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKE---S-Q 122 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTT---C-E
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhccee---e-e
Confidence 3568999999999999999999999999999999886532110 11222222223222111110 0 0
Q ss_pred EEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHH
Q 042564 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVA 347 (498)
Q Consensus 268 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A 347 (498)
+..... .+...+..++.+|.||+|||..+......... ..+ ... .....+++..++... .-....+
T Consensus 123 ~~~~~~--~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~------~~~-~~~----~~~~~~~~~~~~~~~-~vvViGg 188 (233)
T d1djqa3 123 LALGQK--PMTADDVLQYGADKVIIATGASECTLWNELKA------RES-EWA----ENDIKGIYLIGDAEA-PRLIADA 188 (233)
T ss_dssp EECSCC--CCCHHHHHTSCCSEEEECCCEECCHHHHHHHH------TTH-HHH----HTTCCEEEECGGGTS-CCCHHHH
T ss_pred eecccc--cccchhhhhhccceeeeccCCCcccccccccc------ccc-ccc----hhhhhhhhhccccCC-ceeEecC
Confidence 100000 11122223467999999999887654321111 000 111 123456777776433 3345556
Q ss_pred HHHHHHHHHHHh
Q 042564 348 LMEGTCFAKTVF 359 (498)
Q Consensus 348 ~~~g~~aa~~i~ 359 (498)
-..|.-+|..+.
T Consensus 189 G~~g~e~A~~l~ 200 (233)
T d1djqa3 189 TFTGHRVAREIE 200 (233)
T ss_dssp HHHHHHHHHTTT
T ss_pred chHHHHHHHHHH
Confidence 566666666654
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.44 E-value=3.6e-05 Score=73.81 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=30.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCC-CcEEEEccC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFG-AKVGICELP 55 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek~ 55 (498)
+.||+||||||+||+..|.+|++.+ .+|+|+|+.
T Consensus 16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG 50 (385)
T d1cf3a1 16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESG 50 (385)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESS
T ss_pred CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCC
Confidence 4699999999999999999999865 899999954
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.42 E-value=0.00028 Score=64.34 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=68.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC--C-----CCCHH-------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL--R-----GFDDE------------------------------- 243 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l--~-----~~~~~------------------------------- 243 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... . .+.+.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~ 82 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence 379999999999999999999999999999875210 0 01111
Q ss_pred ----------------------HHHHHHHHHHhCCCEEEcCccEEE-EEEeCCeEEEEE-CCCe--EEEcCEEEEecCCC
Q 042564 244 ----------------------MRAVVARNLEGRGINLHPRTTIKE-LIKSEEGVKVIT-DHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 244 ----------------------~~~~l~~~l~~~Gv~i~~~~~v~~-i~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~ 297 (498)
+.+.+.+.+++.+..++....... +..+++...|.+ .+|+ ++.||+||-|.|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~ 162 (292)
T d1k0ia1 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFH 162 (292)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTT
T ss_pred ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCC
Confidence 233345566667666666655444 444444555654 4554 57899999999988
Q ss_pred cCCC
Q 042564 298 PNTK 301 (498)
Q Consensus 298 p~~~ 301 (498)
+..-
T Consensus 163 S~vR 166 (292)
T d1k0ia1 163 GISR 166 (292)
T ss_dssp CSTG
T ss_pred Cccc
Confidence 6654
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.23 E-value=0.0014 Score=56.82 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=30.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
..+++|||+|+.|+++|..++++|.+|+++++.
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 357999999999999999999999999999865
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.23 E-value=0.002 Score=56.34 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=67.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC--------------------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR-------------------------------------------- 238 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~-------------------------------------------- 238 (498)
.|+|||+|+.|+.+|..+++.|.+|.++++.+....
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~ 84 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT 84 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence 689999999999999999999999999996542100
Q ss_pred -CCCH------------HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe--EEEcCEEEEecCCCcCCCC
Q 042564 239 -GFDD------------EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE--EIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 239 -~~~~------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~ 302 (498)
..+- .+.+.+...+++.+|+++.+... + ...+...+...+++ .+.++.+++++|.+|....
T Consensus 85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~--~-~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~ 160 (235)
T d1h6va1 85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK--F-IGPHKIMATNNKGKEKVYSAERFLIATGERPRYLG 160 (235)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE--E-EETTEEEEECTTSCEEEEEEEEEEECCCEEECCCS
T ss_pred eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe--e-ccccceecccccccccccccccceeecCCCceeEE
Confidence 0110 12223455667789998877433 2 23444556555554 5889999999999998764
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.14 E-value=0.0013 Score=56.89 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=65.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-----------------------------------CCCCCH----
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-----------------------------------LRGFDD---- 242 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-----------------------------------l~~~~~---- 242 (498)
..++|||+|+.|+++|..+++.|.+|.++++...- ...++.
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ 83 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence 46999999999999999999999999999875410 000111
Q ss_pred --------HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC-CCeEEEcCEEEEecCCCcCCC
Q 042564 243 --------EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD-HGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 243 --------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~p~~~ 301 (498)
.+...+...++..+|+++.+.. .+. ......+... ++..+.+|.+|+|+|..|...
T Consensus 84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~-~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~ 148 (223)
T d1ebda1 84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFV-DANTVRVVNGDSAQTYTFKNAIIATGSRPIEL 148 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEE-ETTEEEEEETTEEEEEECSEEEECCCEEECCB
T ss_pred hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEc-cCcccceeccccceEEecccEEEEcCCCcccc
Confidence 1223344556778999887632 222 3334444443 345789999999999888653
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.00 E-value=0.0011 Score=58.07 Aligned_cols=100 Identities=24% Similarity=0.241 Sum_probs=64.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC---CcEEEEeeCCCC--------------------------CC-----------CCC-
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG---STVDLLFRKELP--------------------------LR-----------GFD- 241 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g---~~V~lv~~~~~~--------------------------l~-----------~~~- 241 (498)
+|+|||+|+.|+..|...++++ .+|.++++...- .+ .++
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~ 82 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL 82 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence 7999999999999998877665 568999864310 00 011
Q ss_pred H-----------HHHHHHHHHHHhCCCEEEcCccEEEEEEe---CCeEEEEECCCe--EEEcCEEEEecCCCcCCCC
Q 042564 242 D-----------EMRAVVARNLEGRGINLHPRTTIKELIKS---EEGVKVITDHGE--EIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 242 ~-----------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~---~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~ 302 (498)
+ .....+...++..||+++.+.....-... ...+.++..+|+ ++++|.+|+|+|.+|....
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~ 159 (233)
T d1xdia1 83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred eeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCccccccc
Confidence 0 11122456677889999876322110000 012455566665 6899999999999998764
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.00 E-value=4.4e-05 Score=67.75 Aligned_cols=29 Identities=28% Similarity=0.104 Sum_probs=25.8
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+|+|||||++|+++|++|++.|.+|+++|
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e 30 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPL 30 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSC
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEe
Confidence 59999999999999999999998766555
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.95 E-value=0.0037 Score=54.00 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=63.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC--CCH--------------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG--FDD-------------------------------------- 242 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~--~~~-------------------------------------- 242 (498)
.++|||+|+.|+.+|..+++.|.+|.++++....... +..
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 84 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVA 84 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcce
Confidence 6999999999999999999999999999975421100 100
Q ss_pred ---------------HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECC--CeEEEcCEEEEecCCCcCCCC
Q 042564 243 ---------------EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH--GEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 243 ---------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~--g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+...+...++..||+++.+..... ..........+ ...+.++.+++++|.+|....
T Consensus 85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~ 158 (229)
T d3lada1 85 IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL---AGKKVEVTAADGSSQVLDTENVILASGSKPVEIP 158 (229)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC---STTCEEEECTTSCEEEECCSCEEECCCEEECCCT
T ss_pred eecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccc---ccceeeccccCccceeeecccccccCCccccccc
Confidence 0112234555677888876633221 12223333333 235779999999999987753
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.0023 Score=55.34 Aligned_cols=96 Identities=22% Similarity=0.287 Sum_probs=63.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-------------------------------CC----CCCCH-----
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-------------------------------PL----RGFDD----- 242 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-------------------------------~l----~~~~~----- 242 (498)
.++|||+|+.|+++|..++++|.+|.++++... .. ..++.
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE 84 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence 589999999999999999999999999987531 00 01111
Q ss_pred -------HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 243 -------EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 243 -------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+.....+.++..||+++.+..... ..+...+.. ....+.++.+++++|..|....
T Consensus 85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~---~~~~~~~~~-~~~~~~~~~~~iatG~~p~vp~ 147 (221)
T d3grsa1 85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFT---SDPKPTIEV-SGKKYTAPHILIATGGMPSTPH 147 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEESCCEEC---SCSSCEEEE-TTEEEECSCEEECCCEEECCCC
T ss_pred hhheEEeeeccchhhhhccCceEEEEEeeeec---cccceeeee-eccccccceeEEecCccccCCC
Confidence 1222334567788999876642211 111122222 3357889999999999988753
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.92 E-value=0.0036 Score=50.73 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=27.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
.+|+|||||-.|+-+|..|.+.|. +|+++.
T Consensus 46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~ 76 (153)
T d1gtea3 46 GAVIVLGAGDTAFDCATSALRCGARRVFLVF 76 (153)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CEEEEECCChhHHHHHHHHHHcCCcceeEEE
Confidence 479999999999999999999986 588888
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.91 E-value=0.00033 Score=61.63 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=66.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCC-------CcEEEEeeCCCCC--------CC--CCHHHHHHHHHHHHhCCCEEEcCc
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMG-------STVDLLFRKELPL--------RG--FDDEMRAVVARNLEGRGINLHPRT 263 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g-------~~V~lv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~ 263 (498)
|.+|+|||+|+.|+.+|..|.+.| .+|+++++.+.+- |. ....+.+...+.+.+.|++++++.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 81 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence 669999999999999999999887 5799999987542 21 234566666777888899999997
Q ss_pred cEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 264 TIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 264 ~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
.+... +..+ .-...+|.+++|+|..+...
T Consensus 82 ~v~~~--------~~~~-~~~~~~~~v~~atGa~~~~~ 110 (239)
T d1lqta2 82 VVGEH--------VQPG-ELSERYDAVIYAVGAQSRGV 110 (239)
T ss_dssp CBTTT--------BCHH-HHHHHSSEEEECCCCCEECC
T ss_pred Eeccc--------cchh-hhhccccceeeecCCCcccc
Confidence 65211 0000 01135899999999876544
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.79 E-value=0.011 Score=54.87 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=27.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHH----CCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRG----MGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~----~g~~V~lv~~~~ 234 (498)
-.|+|||+|..|+-.|..+++ .|.+|.++++.+
T Consensus 22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~ 58 (356)
T d1jnra2 22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 58 (356)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence 479999999999888877754 689999999754
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.0084 Score=46.68 Aligned_cols=32 Identities=34% Similarity=0.310 Sum_probs=30.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+..+|+|||||.+.+-.|..|++...+|+|+-
T Consensus 29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~ 60 (126)
T d1fl2a2 29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE 60 (126)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTBSEEEEEC
T ss_pred CCceEEEEeCCHHHHHHHHhhhccCCceEEEe
Confidence 45799999999999999999999999999998
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.49 E-value=0.00089 Score=61.93 Aligned_cols=39 Identities=31% Similarity=0.498 Sum_probs=35.3
Q ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 198 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
...||+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~ 65 (370)
T d2iida1 27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP 65 (370)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 456899999999999999999999999999999987653
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.37 E-value=0.0014 Score=59.61 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=33.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.|+|+|||+|+.|+-+|..|++.|.+|+++++.+++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 36 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 36 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 478999999999999999999999999999987754
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.015 Score=45.07 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=30.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+..+|+|||||-+++-.|..|++...+|+++-+
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r 58 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 58 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEee
Confidence 457999999999999999999999999999983
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0018 Score=47.62 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=29.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++|+|||.|.+|+++|..|.+.|.+|+++|.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~ 36 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDT 36 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEES
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeC
Confidence 35799999999999999999999999999993
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=96.21 E-value=0.015 Score=51.91 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=68.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHH-CCCcEEEEeeCCCCC----------CC-----CCH----------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRG-MGSTVDLLFRKELPL----------RG-----FDD---------------------- 242 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~-~g~~V~lv~~~~~~l----------~~-----~~~---------------------- 242 (498)
...|+|||+|+.|+.+|..|++ .|.+|+++++.+.+- +. ...
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 112 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 112 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence 3579999999999999999987 599999999887431 10 001
Q ss_pred --HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEE-EEE--------------CCCeEEEcCEEEEecCCCcC
Q 042564 243 --EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-VIT--------------DHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 243 --~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-v~~--------------~~g~~i~~D~vi~a~G~~p~ 299 (498)
.+...+.+.+...++.+..++.+..+...++.+. +.. .++..+.++.++.++|....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~ 186 (278)
T d1rp0a1 113 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP 186 (278)
T ss_dssp HHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCcc
Confidence 1222334455566888888888888777666532 211 12357889999999997543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.17 E-value=0.002 Score=53.24 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
-+|+|||+|.+|+.||..+.+.|.+|+++|
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D 59 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATD 59 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEe
Confidence 489999999999999999999999999999
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.07 E-value=0.048 Score=42.37 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=31.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.-+..+|+|||||-+.+-.|..|++.-.+|+||-+
T Consensus 31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r 65 (130)
T d1vdca2 31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 65 (130)
T ss_dssp GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECS
T ss_pred HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEe
Confidence 33567999999999999999999999999999983
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.01 E-value=0.0027 Score=51.69 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
-+|+|||+|.+|+.|+..+.+.|.+|+++|
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D 62 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFD 62 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEe
Confidence 579999999999999999999999999999
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0035 Score=57.97 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
..+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~ 40 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 40 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 468999999999999999999999999999998765
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.94 E-value=0.0038 Score=57.34 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=34.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL 237 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l 237 (498)
.|+|+|||+|++|+-+|..|++.|.+|+++++.+++-
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG 38 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG 38 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence 4789999999999999999999999999999988753
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.83 E-value=0.0043 Score=54.72 Aligned_cols=34 Identities=41% Similarity=0.514 Sum_probs=31.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.++|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999999999999999999854
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.78 E-value=0.0036 Score=56.58 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=31.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
+|+|||+|+.|+.+|..|++.|.+|+++++++.+
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 35 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 35 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 5999999999999999999999999999998754
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.72 E-value=0.0037 Score=51.94 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=29.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.|+|||+|..|..+|..|.+.|++|+|+|+
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr 33 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACR 33 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 5799999999999999999999999999993
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.70 E-value=0.0045 Score=54.80 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=31.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~ 236 (498)
+|+|||+|+.|+-+|..|++.|. +|+++++.+.+
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~ 36 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI 36 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 59999999999999999999996 69999998764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.65 E-value=0.0045 Score=51.68 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+.+.|||+|..|++.|..|++.|++|.+++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~ 31 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWD 31 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEE
Confidence 479999999999999999999999999999
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0068 Score=55.05 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=31.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.++|||||++|+-+|..|++.|.+|+++++.+++
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~i 36 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCc
Confidence 5899999999999999999999999999998875
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.94 E-value=0.043 Score=41.45 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=30.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
.++|+|||+|.+|..-+..|.+.|.+|+++...
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~ 44 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999998754
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=94.90 E-value=0.11 Score=44.27 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=28.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.++|+|||+|-.|.-.|..+++.+.+++++=
T Consensus 32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~ 62 (235)
T d1w4xa2 32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQ 62 (235)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred CCEEEEECCCccHHHHHHHHHhhhccccccc
Confidence 4789999999999999999999888887776
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.012 Score=54.29 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=31.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~ 34 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV 34 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 4899999999999999999999999999987754
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=94.77 E-value=0.011 Score=47.06 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=50.8
Q ss_pred HHHHHHHHHHCCC--cEEEEeeCCCCCC--CCCHHHHHHHHHHHHhCCCEEEcCcc--EEEEEEeCCeEEEEECCCeEEE
Q 042564 213 AVEFASIWRGMGS--TVDLLFRKELPLR--GFDDEMRAVVARNLEGRGINLHPRTT--IKELIKSEEGVKVITDHGEEIV 286 (498)
Q Consensus 213 g~e~a~~l~~~g~--~V~lv~~~~~~l~--~~~~~~~~~l~~~l~~~Gv~i~~~~~--v~~i~~~~~~~~v~~~~g~~i~ 286 (498)
++-++..|++.|. +|.++...+.... .+.+.+.+.+.+.+++.||+++.+.. +.++. .....+++.+|++++
T Consensus 55 a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd--~~~~~~~~~~Ge~v~ 132 (141)
T d1fcda2 55 ASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVD--GGEMMVETAFGDEFK 132 (141)
T ss_dssp HHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEE--ETTTEEEETTCCEEE
T ss_pred HHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeec--CCcEEEEeCCCcEEe
Confidence 3444555666654 6777766543211 12234556666777888999998765 55554 344467888999999
Q ss_pred cCEEEEe
Q 042564 287 ADVVLFA 293 (498)
Q Consensus 287 ~D~vi~a 293 (498)
+|++++.
T Consensus 133 yD~l~vv 139 (141)
T d1fcda2 133 ADVINLI 139 (141)
T ss_dssp CSEEEEC
T ss_pred eeEEEeC
Confidence 9998764
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.73 E-value=0.0092 Score=48.03 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=29.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
...++|||||..|+.-|..|.+.|.+|+||.
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVva 43 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVS 43 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999999999999997
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=94.67 E-value=0.015 Score=50.92 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=31.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.|+|||+|+.|+-+|..|++.|.+|.++++.+.+
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5999999999999999999999999999987643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.67 E-value=0.012 Score=46.14 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=28.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+++|||.|..|...|..|.+.|.+|+++|
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid 30 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVD 30 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEec
Confidence 68999999999999999999999999999
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.64 E-value=0.018 Score=49.67 Aligned_cols=33 Identities=30% Similarity=0.241 Sum_probs=30.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.++|||+|+.|+.+|..+++.|.+|.++++.+.
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~ 40 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT 40 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 589999999999999999999999999998664
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.62 E-value=0.015 Score=51.67 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=30.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 59999999999999999999999999999865
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=94.59 E-value=0.016 Score=50.99 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=32.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
..|+|||+|+.|+-+|..+++.|.+|.++++.+.+
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 46999999999999999999999999999998653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.59 E-value=0.015 Score=45.52 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.|+|+|+|.-|...|..|.+.|++|+++|
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid 30 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLID 30 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceec
Confidence 59999999999999999999999999999
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.45 E-value=0.016 Score=43.96 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=29.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
...|+|||||..|..-|..|.+.|.+|++++
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~ 42 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNA 42 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 4689999999999999999999999999998
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.40 E-value=0.014 Score=46.87 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
..|+++|||||.+|.+-+..|.+.|.+|+++.+.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999999999999999999999999754
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.33 E-value=0.024 Score=48.82 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=30.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.|+|||+|+.|+.+|..+++.|.+|.++++.+.
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~ 39 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK 39 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 689999999999999999999999999998665
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=94.26 E-value=0.017 Score=53.30 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=31.0
Q ss_pred eEEEEcCCHHHHHHHHHHH-----HCCCcEEEEeeCCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWR-----GMGSTVDLLFRKELPL 237 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~-----~~g~~V~lv~~~~~~l 237 (498)
.|+|||||+.|+-+|..|+ +.|.+|+++++.+.+.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~ 48 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV 48 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence 6999999999999999996 5699999999987654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.011 Score=49.75 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=31.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
-++|.|||+|.+|..+|..++..|.+|+++++.+.
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 37999999999999999999999999999987653
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.05 E-value=0.016 Score=48.64 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=30.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..+.+++|||+|.-|.+.|..|++.|.+|.++.
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~ 37 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWH 37 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEEC
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 334579999999999999999999999999998
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.038 Score=40.09 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT 279 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~ 279 (498)
..|+|+|+|.|.+|+.+|..|.+.|.+|++.+.....-. . +.+ +.++.++++..
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~--~--------~~~-~~~~~~~~~~~--------------- 57 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG--L--------DKL-PEAVERHTGSL--------------- 57 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTT--G--------GGS-CTTSCEEESBC---------------
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchh--H--------HHH-hhccceeeccc---------------
Confidence 357899999999999999999999999999987553211 1 111 22344433310
Q ss_pred CCCeEEEcCEEEEecCCCcCCCCC
Q 042564 280 DHGEEIVADVVLFATGRAPNTKRL 303 (498)
Q Consensus 280 ~~g~~i~~D~vi~a~G~~p~~~~l 303 (498)
.....-.+|.||+++|..|+...+
T Consensus 58 ~~~~~~~~d~vi~SPGi~~~~~~~ 81 (93)
T d2jfga1 58 NDEWLMAADLIVASPGIALAHPSL 81 (93)
T ss_dssp CHHHHHHCSEEEECTTSCTTSHHH
T ss_pred chhhhccCCEEEECCCCCCCCHHH
Confidence 000113579999999998877653
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.027 Score=45.70 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+|+|||+|.-|...|..|++.|++|+++++
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r 31 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLR 31 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence 699999999999999999999999999994
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.87 E-value=0.037 Score=53.06 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC--e-EEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEE--G-VKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~-~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.++.+.+-+...-.|-.+++++.|..|..+.+ . ..+..++|+++.++.||....+.|..
T Consensus 376 gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~~ 437 (491)
T d1vg0a1 376 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSEN 437 (491)
T ss_dssp THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTT
T ss_pred chHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCcc
Confidence 47888888888888999999999999987532 2 45677889999999999987776654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=93.79 E-value=0.031 Score=49.71 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=30.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~ 37 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 599999999999999999999999999998653
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=93.71 E-value=0.026 Score=45.00 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=30.1
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCC--CcEEEEc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFG--AKVGICE 53 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lve 53 (498)
|..+.+|.|||+|.-|.+.|+.|+..| .+++|+|
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D 37 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVD 37 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEee
Confidence 445668999999999999999999977 4899999
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.68 E-value=0.029 Score=50.62 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=29.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKE 234 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~ 234 (498)
+|+|||+|.+|+-+|..|++.|. +|+++++++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 69999999999999999999995 799999874
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.63 E-value=0.028 Score=46.20 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.|+|+|+|+|.+|..+|..|.+.|.+|+++.|..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 3789999999999999999999999999999853
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=93.46 E-value=0.013 Score=49.09 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=31.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
-++|.|||+|.+|..+|..+...|.+|+++++.+
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3689999999999999999999999999998854
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.035 Score=46.51 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||+|.-|..-|..+++.|++|+++|
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D 34 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVD 34 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEE
Confidence 479999999999999999999999999999
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.15 E-value=0.035 Score=46.93 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+|.|||.|.-|+..|..+++.|++|+.+|
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D 30 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVD 30 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEe
Confidence 48999999999999999999999999999
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=93.11 E-value=0.04 Score=44.23 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=30.2
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
.|.++.+|.|||+|.-|.+.|+.|+..+. +++|+|
T Consensus 3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D 38 (154)
T d1pzga1 3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYD 38 (154)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEE
Confidence 34566899999999999999998888775 899999
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=92.93 E-value=0.037 Score=46.08 Aligned_cols=30 Identities=30% Similarity=0.224 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+|.|||+|.-|..-|..+++.|++|+++|
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D 34 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKD 34 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEE
Confidence 469999999999999999999999999999
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=92.80 E-value=0.044 Score=45.20 Aligned_cols=32 Identities=28% Similarity=0.125 Sum_probs=30.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
|++.|||+|..|.-+|..|.+.|.+|+++.|.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~ 33 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 33 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 68999999999999999999999999999874
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.52 E-value=0.069 Score=40.82 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=28.3
Q ss_pred CccEEEECCCh-----------hHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGS-----------GGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~-----------aGl~aA~~l~~~g~~V~lve 53 (498)
..+|+|||+|| ++..|+..|++.|++++++.
T Consensus 7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN 48 (127)
T d1a9xa3 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVN 48 (127)
T ss_dssp CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEec
Confidence 46899999995 78999999999999999999
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=92.33 E-value=0.073 Score=42.96 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=30.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
+|+|+|+|.+|.-+|..|.+.|.+|+++.|.+
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~ 33 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCH
Confidence 68999999999999999999999999998865
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.25 E-value=0.17 Score=39.05 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=28.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
+|+|+|+|..|..++..|.+.|.+|++++..
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d 32 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 32 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence 5899999999999999999999999999873
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=92.12 E-value=0.078 Score=49.02 Aligned_cols=33 Identities=33% Similarity=0.268 Sum_probs=30.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.|+|||+|..|+-+|..|++.|.+|.+++++..
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 36 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence 589999999999999999999999999999754
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.80 E-value=0.43 Score=40.23 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=19.0
Q ss_pred CccEEEECCChhHHHHHHHHH
Q 042564 23 DFDLFVIGAGSGGVRAARFSA 43 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~ 43 (498)
..+|+|||+|-.++=+|+.|.
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll 59 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILL 59 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHH
T ss_pred CceEEEECCCchhHhhhhhhc
Confidence 368999999999999999887
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=91.74 E-value=0.064 Score=39.99 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=28.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.++|+|||+|.+|.-.|..|++...+++++-
T Consensus 32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~ 62 (107)
T d2gv8a2 32 GESVLVVGGASSANDLVRHLTPVAKHPIYQS 62 (107)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHHhcCEEEEEE
Confidence 4689999999999999999999888887776
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=91.64 E-value=0.086 Score=48.83 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=30.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.|+|||+|..|+-+|..|++.|.+|.+++++..
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 41 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 41 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 689999999999999999999999999999753
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.51 E-value=0.086 Score=49.20 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=31.1
Q ss_pred eEEEEcCCHHHHHHHHHHHH------CCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRG------MGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~------~g~~V~lv~~~~~~ 236 (498)
.|+|||||+.|+-+|..|++ .|.+|.+++++..+
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p 73 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 73 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence 79999999999999999987 79999999998754
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=91.27 E-value=0.16 Score=40.68 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=29.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC--cEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lve 53 (498)
+.+|.|||+|.-|.++|+.|...|. +++|+|
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD 52 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVD 52 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4689999999999999999999887 899999
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=91.27 E-value=0.086 Score=47.81 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=30.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~ 57 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI 57 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 799999999999999999999999999998753
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.08 E-value=0.092 Score=42.64 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=27.5
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.|+|+|+|+.|+.++..++..|.+|+++|
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~ 57 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTA 57 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEcccccchhhHhhHhhhcccccccc
Confidence 69999999999999998888999999999
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=91.05 E-value=0.11 Score=42.30 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=29.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..+|+|+|+|-++.++++.|.+.|.+|+|+.
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~n 48 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSLDCAVTITN 48 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECCcHHHHHHHHHhcccceEEEecc
Confidence 4689999999999999999999999999998
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.00 E-value=0.075 Score=43.82 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=27.9
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+|.|||+|.-|.+.|..|++.|.+|.++.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~ 30 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWG 30 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 69999999999999999999999999997
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=90.95 E-value=0.092 Score=40.72 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=29.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
|+++|+|.|..|..+|..|.+.|.+|++++..
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d 32 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 32 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence 57899999999999999999999999999864
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=90.95 E-value=0.11 Score=47.95 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=31.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.++|||+|..|+-+|..|++.|.+|.+++++...
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~ 39 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID 39 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence 6999999999999999999999999999998653
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.2 Score=37.70 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=28.1
Q ss_pred CccEEEECCC-----------hhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAG-----------SGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG-----------~aGl~aA~~l~~~g~~V~lve 53 (498)
..+|+|||+| .++..|+..|++.|++++++.
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN 45 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN 45 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEe
Confidence 4579999999 478899999999999999999
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.40 E-value=0.1 Score=47.11 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~ 236 (498)
..+|+|||+|+.|+.+|..|++. |.+|+++++.+.+
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence 35799999999999999999854 8999999998753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.31 E-value=0.12 Score=41.98 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=27.1
Q ss_pred cEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
.|+|+|+|+.|+.++..|+..|. +|+++|
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d 58 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTD 58 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EEEEECCCccHHHHHHHHHHcCCceEEecc
Confidence 69999999999999999999998 799999
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=90.30 E-value=0.11 Score=47.15 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=29.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.|+|||+|+.|+-.|..+++.|.+|.++++.+
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~ 38 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 59999999999999999999999999999754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.12 E-value=0.12 Score=41.79 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=27.5
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
-.|+|+|+|+.|+.++..++..|.+|++++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~ 58 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVIS 58 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccc
Confidence 469999999999999988888999999999
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.01 E-value=0.22 Score=37.20 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=29.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++|.|||||--|...|..+.+.|++|.++|+
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~ 42 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDR 42 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 35799999999999999999999999999994
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.88 E-value=0.14 Score=41.37 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=27.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
-.|+|+|+|+.|+.++..++..|.+|+.+|
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~ 58 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAID 58 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceec
Confidence 469999999999999998888999999999
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=89.78 E-value=0.52 Score=37.14 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=40.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPR 262 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 262 (498)
.+++|+|.|..|..++..|.+.|.+|++++..+ +-.....+.+...|+.++.+
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~--------~~~~~~~~~~~~~~~~vi~G 56 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP--------EDDIKQLEQRLGDNADVIPG 56 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC--------HHHHHHHHHHHCTTCEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc--------hhHHHHHHHhhcCCcEEEEc
Confidence 479999999999999999999999999997643 22223334445567877765
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=89.53 E-value=0.41 Score=33.97 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=50.5
Q ss_pred eEEEEcCCHHHH-HHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECC
Q 042564 203 RAVVLGGGYIAV-EFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH 281 (498)
Q Consensus 203 ~v~ViG~G~~g~-e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~ 281 (498)
++-++|-|-+|+ -+|..|.+.|.+|+.-++.+ .+ ..+.|++.|++++.+.....+
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~------~~-----~t~~L~~~Gi~i~~gh~~~~i------------- 58 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE------TE-----RTAYLRKLGIPIFVPHSADNW------------- 58 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC------CH-----HHHHHHHTTCCEESSCCTTSC-------------
T ss_pred EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC------Ch-----hHHHHHHCCCeEEeeeccccc-------------
Confidence 678898777777 46999999999999987643 12 234588899999876433222
Q ss_pred CeEEEcCEEEEecCCCcCC
Q 042564 282 GEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 282 g~~i~~D~vi~a~G~~p~~ 300 (498)
..+|.||+..+...+.
T Consensus 59 ---~~~d~vV~SsAI~~~n 74 (89)
T d1j6ua1 59 ---YDPDLVIKTPAVRDDN 74 (89)
T ss_dssp ---CCCSEEEECTTCCTTC
T ss_pred ---CCCCEEEEecCcCCCC
Confidence 2368898888876543
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=89.51 E-value=0.19 Score=39.85 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=29.1
Q ss_pred ccEEEEC-CChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIG-AGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIG-gG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|.||| .|.-|...|..|++.|++|.++|+
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~ 41 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRASGYPISILDR 41 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECT
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccc
Confidence 5899999 699999999999999999999993
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.25 E-value=0.17 Score=40.07 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=27.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC--cEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lve 53 (498)
..+|.|||+|--|.+.|+.|...+. +++|+|
T Consensus 6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~D 38 (148)
T d1ldna1 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLID 38 (148)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence 4579999999999999999998665 899999
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=88.92 E-value=0.24 Score=39.97 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=29.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
++.+|+|||+|-++.++++.|.+.|. ++.|+.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~n 48 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA 48 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEec
Confidence 35689999999999999999999996 899998
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=88.92 E-value=0.2 Score=39.77 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
++||+|.|.-|...+..|.+.|.+|++||
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId 33 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVIS 33 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEe
Confidence 69999999999999999999999999999
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.75 E-value=0.15 Score=42.46 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=25.8
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+|.|||.|.-|+..|..++ .|.+|+.+|
T Consensus 2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~D 29 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVD 29 (196)
T ss_dssp EEEEECCSHHHHHHHHHHT-TTSEEEEEC
T ss_pred EEEEECCChhHHHHHHHHH-CCCcEEEEE
Confidence 5899999999999998886 599999999
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.70 E-value=0.041 Score=47.49 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcE
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTV 227 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V 227 (498)
+|+|||+|.+|+-.|..|++.|.+|
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v 26 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSV 26 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred EEEEECchHHHHHHHHHHHHCCCCc
Confidence 5999999999999999999988653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=88.59 E-value=0.32 Score=38.94 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
.|.+|+|+|+|..|+..+....++|.+|++++..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~ 64 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN 64 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence 3679999999999999999999999999999864
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=88.56 E-value=0.17 Score=39.91 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=27.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC--cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~--~V~lve 53 (498)
++|.|||+|.-|.++|+.|...|. +++|+|
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~D 33 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFID 33 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence 479999999999999999998664 899999
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=88.46 E-value=0.2 Score=40.48 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=27.5
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
-.|+|+|+|+.|+.++..++..|.++++++
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~ 61 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFT 61 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhc
Confidence 469999999999999988888999999998
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=88.39 E-value=0.21 Score=40.22 Aligned_cols=30 Identities=20% Similarity=0.015 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+|.|||.|.-|.+.|..|++.|++|+++|+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~ 31 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSR 31 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEEC
Confidence 589999999999999999999999999993
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=88.33 E-value=0.18 Score=41.31 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=27.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
-.|+|+|+|+.|+.++..++..|. +|+++|
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~ 60 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIA 60 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEE
T ss_pred CEEEEECCCccchhheecccccccccccccc
Confidence 369999999999999999988997 799999
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=88.16 E-value=0.11 Score=37.82 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCHHHHHH-HHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEE
Q 042564 200 LPKRAVVLGGGYIAVEF-ASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVI 278 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~-a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~ 278 (498)
..+++.++|-|-+|+-. |..|.+.|.+|+..+.... + ..+.+.+.|+.++.+..-..+
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~------~-----~~~~L~~~Gi~v~~g~~~~~i---------- 65 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG------V-----VTQRLAQAGAKIYIGHAEEHI---------- 65 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS------H-----HHHHHHHTTCEEEESCCGGGG----------
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC------h-----hhhHHHHCCCeEEECCccccC----------
Confidence 35799999988777664 9999999999999876531 2 224556789998876443221
Q ss_pred ECCCeEEEcCEEEEecCCCcC
Q 042564 279 TDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 279 ~~~g~~i~~D~vi~a~G~~p~ 299 (498)
-.+|.||...+...+
T Consensus 66 ------~~~d~vV~S~AI~~~ 80 (96)
T d1p3da1 66 ------EGASVVVVSSAIKDD 80 (96)
T ss_dssp ------TTCSEEEECTTSCTT
T ss_pred ------CCCCEEEECCCcCCC
Confidence 135888888887553
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=88.08 E-value=0.58 Score=41.27 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=42.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcC
Q 042564 201 PKRAVVLGG-GYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPR 262 (498)
Q Consensus 201 ~~~v~ViG~-G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 262 (498)
.++|+|+|| |.+|..++..|.+.|.+|+.+.|.... .+.... .....+...+++++..
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~---~~~~~~-~~~~~~~~~~v~~v~~ 61 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV---SNIDKV-QMLLYFKQLGAKLIEA 61 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS---SCHHHH-HHHHHHHTTTCEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc---cchhHH-HHHhhhccCCcEEEEe
Confidence 467999996 999999999999999999999886542 233322 2334566778887643
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=87.98 E-value=0.25 Score=38.78 Aligned_cols=29 Identities=34% Similarity=0.397 Sum_probs=27.1
Q ss_pred cEEEECCChhHHHHHHHHHhCCC--cEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~--~V~lve 53 (498)
+|.|||+|.-|.++|+.|...+. +++|+|
T Consensus 3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D 33 (143)
T d1llda1 3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLED 33 (143)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 69999999999999999998776 899999
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=87.90 E-value=0.27 Score=38.45 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=27.5
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC--cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~--~V~lve 53 (498)
.+|.|||+|--|.+.|+.|...+. +++|+|
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D 33 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLID 33 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 379999999999999999999776 899999
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=87.89 E-value=0.22 Score=34.37 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.|.|||||-=|...+..+.+.|.+|.++|.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp 32 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGL 32 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECT
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcC
Confidence 4699999999999999999999999999993
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=87.63 E-value=0.36 Score=39.24 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
|.+|+|+|+|..|...+....++|.+|++++...
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~ 62 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 62 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence 6799999999999999999999999999998754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=87.62 E-value=0.27 Score=40.00 Aligned_cols=30 Identities=23% Similarity=0.163 Sum_probs=26.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
-.|+|+|+|+-|+.++..++..|. +|+++|
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d 60 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAID 60 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeec
Confidence 369999999999999999999998 566777
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=87.40 E-value=0.26 Score=40.08 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=27.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
-.|+|+|+|+.|+.++..++..|. +|+++|
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d 59 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 59 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEEC
T ss_pred CEEEEEcCCcchhhhhhhhhccccccccccc
Confidence 469999999999999999888997 799999
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.28 E-value=0.25 Score=41.03 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=26.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
-.|+|+|+|+.|+.++..++..|. +|+++|
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d 57 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGD 57 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeec
Confidence 479999999999999998888776 788888
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.19 E-value=0.25 Score=40.58 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=27.1
Q ss_pred cEEEE-CCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVI-GAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvII-GgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+|.|| |+|.-|.+.|..|++.|++|++..
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~ 31 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGS 31 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 48899 669999999999999999999999
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=87.05 E-value=0.3 Score=44.85 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=30.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.++|||+|..|+-+|..|++.|.+|.+++++..
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~ 36 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 36 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence 589999999999999999999999999999853
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=87.01 E-value=0.29 Score=38.25 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=26.7
Q ss_pred cEEEECCChhHHHHHHHHHhCCC--cEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~--~V~lve 53 (498)
+|.|||+|--|.+.|+.|+..+. +++|+|
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~D 32 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQLARELVLLD 32 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCceEEEec
Confidence 59999999999999999999774 999999
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.00 E-value=0.3 Score=39.73 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=26.9
Q ss_pred cEEEECCChhHHHHHHHHHhCC-CcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFG-AKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g-~~V~lve 53 (498)
-|+|+|+|+.|+.++..++..| .+|.++|
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd 61 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGASRIIGID 61 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEEEECCCchhHHHHHHHHHcCCceEEEec
Confidence 4999999999999999999999 4899999
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.82 E-value=0.28 Score=39.41 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=27.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
-.|+|+|+|+.|+.++..++..|.+|.+++
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~ 58 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVD 58 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccC
Confidence 369999999999999998888999999998
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=86.81 E-value=0.25 Score=38.68 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=27.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
.+|.|||+|.-|.++|+.|+..+. +++++|
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D 32 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLD 32 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEe
Confidence 379999999999999999988665 899999
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.56 E-value=0.34 Score=38.64 Aligned_cols=34 Identities=32% Similarity=0.295 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
-.|+++|+|-|.+|-.+|..++.+|.+|++.+..
T Consensus 23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d 56 (163)
T d1li4a1 23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEID 56 (163)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence 3689999999999999999999999999999774
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.45 E-value=0.29 Score=38.36 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=26.4
Q ss_pred cEEEECC-ChhHHHHHHHHHhCCC--cEEEEc
Q 042564 25 DLFVIGA-GSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 25 dvvIIGg-G~aGl~aA~~l~~~g~--~V~lve 53 (498)
+|.|||| |.-|.+.|+.|+..+. +++|+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiD 33 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYD 33 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEe
Confidence 5899996 9999999999998776 799999
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.33 E-value=0.41 Score=38.18 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=27.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC--cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~--~V~lve 53 (498)
.+|.|||+|--|.+.|+.|...+. +++|+|
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D 51 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVD 51 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 479999999999999999999776 899999
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.19 E-value=0.68 Score=34.31 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=31.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.+|.|+|||..|..++....++|.++.++++.+.
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 4799999999999999999999999999998764
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=86.07 E-value=0.28 Score=33.80 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=30.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
|+|.|+|+|..|..++..-.++|.++.++...+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 5799999999999999999999999999987543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.74 E-value=0.71 Score=38.30 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=28.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
+|.|||.|+.|+-+|..|++.|.+|+.++..
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 5899999999999999999999999998764
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=85.51 E-value=0.48 Score=37.30 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.4
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 200 LPKRAVVLG-GGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 200 ~~~~v~ViG-~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.-++|.||| .|.+|.-+|..|.+.|.+|+++++..
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 347999999 69999999999999999999998754
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.97 E-value=0.33 Score=37.95 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=26.4
Q ss_pred cEEEECCChhHHHHHHHHHhCCC--cEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~--~V~lve 53 (498)
+|.|||+|--|.+.|+.|+..+. +++|+|
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~D 32 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVD 32 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhcCcCceEEEEe
Confidence 69999999999999999998664 799999
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=84.95 E-value=0.33 Score=37.82 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=26.1
Q ss_pred cEEEECCChhHHHHHHHHHhCC--CcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFG--AKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g--~~V~lve 53 (498)
+|.|||+|--|.++|+.|...+ .+++|+|
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D 32 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLID 32 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 6899999999999999998866 4899999
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.89 E-value=0.41 Score=37.52 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=26.6
Q ss_pred cEEEECC-ChhHHHHHHHHHhCCC--cEEEEc
Q 042564 25 DLFVIGA-GSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 25 dvvIIGg-G~aGl~aA~~l~~~g~--~V~lve 53 (498)
+|.|||+ |.-|.++|+.|+..+. +++|+|
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D 33 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIG 33 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHhCCccccccccc
Confidence 5999996 9999999999999884 999999
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.44 E-value=0.35 Score=39.20 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEE-Ec
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGI-CE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~l-ve 53 (498)
-+|+|+|+|+.|+.++..++..|.++++ +|
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~ 60 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVD 60 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeec
Confidence 4699999999999999998888886654 45
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=84.36 E-value=1.3 Score=38.60 Aligned_cols=58 Identities=22% Similarity=0.374 Sum_probs=42.2
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEc
Q 042564 201 PKRAVVLGG-GYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 201 ~~~v~ViG~-G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
.++|+|+|+ |.+|-.++..|.+.|.+|+.+.|...... ...... ..+.+...+++++.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~--~~~~~~-~~~~~~~~~~~~~~ 61 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS--NSEKAQ-LLESFKASGANIVH 61 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT--THHHHH-HHHHHHTTTCEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc--chhHHH-HHHhhccCCcEEEE
Confidence 368999996 99999999999999999999998764332 333322 33445666777654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=84.34 E-value=0.44 Score=34.34 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=31.0
Q ss_pred cCCCCccEEEECCChhHHHH-HHHHHhCCCcEEEEc
Q 042564 19 QTHFDFDLFVIGAGSGGVRA-ARFSANFGAKVGICE 53 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~a-A~~l~~~g~~V~lve 53 (498)
+|....++-+||-|-+|+++ |..|.+.|++|+--|
T Consensus 4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD 39 (96)
T d1p3da1 4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSD 39 (96)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEE
T ss_pred cchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEe
Confidence 34556789999999999999 999999999999999
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.15 E-value=0.51 Score=37.60 Aligned_cols=31 Identities=35% Similarity=0.345 Sum_probs=29.6
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
-+.++|||-|..|-..|..|+..|.+|+++|
T Consensus 24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e 54 (163)
T d1li4a1 24 GKVAVVAGYGDVGKGCAQALRGFGARVIITE 54 (163)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEeccccccHHHHHHHHhCCCeeEeee
Confidence 4679999999999999999999999999999
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=83.96 E-value=0.21 Score=38.31 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=24.7
Q ss_pred CCccEEEECCChhHHHHHHHHHh-CCCcE-EEEc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN-FGAKV-GICE 53 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~V-~lve 53 (498)
+++.|+|+|||-+|.+.+..+.+ .++++ .++|
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiD 35 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFD 35 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEE
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEe
Confidence 46899999999999988877654 45554 4667
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=83.66 E-value=0.39 Score=38.83 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=29.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+.++|+|+|-++.+++..|.+.+.+|+|+.|
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR 49 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANR 49 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCcHHHHHHHHHHcccCceeeeccc
Confidence 46799999999999999999998889999993
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=83.14 E-value=0.59 Score=43.33 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=30.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG-STVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~ 235 (498)
.++|||+|..|+-+|..|++.+ .+|.++++++.
T Consensus 26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~ 59 (391)
T d1gpea1 26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence 7999999999999999999988 59999999974
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=82.94 E-value=0.65 Score=37.03 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=28.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
+|.|||.|..|.-+|..|.+.|.+|+.++|.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ 32 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 5899999999999999999999999988764
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.94 E-value=1.3 Score=35.88 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=28.6
Q ss_pred eEEEE-cCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 203 RAVVL-GGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 203 ~v~Vi-G~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
+|.|+ |+|.+|..+|..|.+.|.+|++..|.+
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 57899 679999999999999999999998853
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.90 E-value=0.68 Score=38.37 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=28.5
Q ss_pred ccEEEECC-ChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGA-GSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGg-G~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|+|+|| |..|...+.+|.+.|++|+++.+
T Consensus 4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R 35 (205)
T d1hdoa_ 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVR 35 (205)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEc
Confidence 46999996 99999999999999999999983
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=82.84 E-value=0.4 Score=41.32 Aligned_cols=31 Identities=23% Similarity=0.504 Sum_probs=29.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
+.+|+|||+|.-|..+|..|++.|. +++|+|
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD 61 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLD 61 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 3589999999999999999999997 899999
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=82.77 E-value=0.51 Score=38.33 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=27.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.++|+|||+|-++-++++.|.+.| +|.|+.
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~n 47 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAKDN-NIIIAN 47 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEEC
T ss_pred CCEEEEECCcHHHHHHHHHHcccc-ceeeeh
Confidence 468999999999999999998777 899998
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=82.76 E-value=0.37 Score=39.72 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=29.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
++|.|+|+|..|.-+|..|.+.|.+|+++.|.
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~ 39 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN 39 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence 47999999999999999999999999998763
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=82.60 E-value=0.51 Score=38.22 Aligned_cols=29 Identities=24% Similarity=0.148 Sum_probs=26.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
.|+|+|+|+.|+.++..++..|. +|+++|
T Consensus 30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d 59 (174)
T d1p0fa2 30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVG 59 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred EEEEECCCchhHHHHHHHHHcCCceeeccC
Confidence 59999999999999999999886 688888
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=82.49 E-value=1 Score=36.48 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=29.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKE 234 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~ 234 (498)
.++|+|+|+|.+|.-.+..++.+|. +|+++++.+
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CCEEEEECCCccchhheeccccccccccccccccc
Confidence 4799999999999999999999998 688887643
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=82.33 E-value=0.68 Score=36.41 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=26.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCC-cEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGA-KVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lve 53 (498)
.+|.|||+|--|.+.|+.|.+.+. +++|+|
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~D 34 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFD 34 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 479999999999999998888664 899999
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=82.08 E-value=0.81 Score=36.73 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=31.3
Q ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 199 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
...++|+|+|+|-.+--++..|.+.|.+++++.|.
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt 50 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 50 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence 34689999999999999999999999999998875
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.89 E-value=0.65 Score=36.98 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.|-|||-|.-|...|.+|.+.|++|.++|
T Consensus 3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d 31 (162)
T d3cuma2 3 QIAFIGLGHMGAPMATNLLKAGYLLNVFD 31 (162)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEEEEHHHHHHHHHHHHHCCCeEEEEE
Confidence 59999999999999999999999999999
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=81.36 E-value=0.75 Score=35.77 Aligned_cols=29 Identities=28% Similarity=0.262 Sum_probs=26.4
Q ss_pred cEEEEC-CChhHHHHHHHHHhCCC--cEEEEc
Q 042564 25 DLFVIG-AGSGGVRAARFSANFGA--KVGICE 53 (498)
Q Consensus 25 dvvIIG-gG~aGl~aA~~l~~~g~--~V~lve 53 (498)
+|.||| +|.-|.++|+.|...+. +++|+|
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~D 33 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVD 33 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEe
Confidence 689999 69999999999999775 799999
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=80.80 E-value=0.92 Score=36.23 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=30.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
.++|+|+|+|.+|+-.+..++..|.+|..+++.
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~ 59 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS 59 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEcccccchhhHhhHhhhcccccccchH
Confidence 579999999999999999999999999988764
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=80.47 E-value=0.9 Score=36.67 Aligned_cols=31 Identities=19% Similarity=0.107 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|-|||-|.-|...|.+|.+.|++|.++|+
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr 33 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNR 33 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcC
Confidence 4799999999999999999999999999993
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=80.43 E-value=1.5 Score=35.79 Aligned_cols=35 Identities=37% Similarity=0.394 Sum_probs=31.1
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 200 LPKRAVVLG-GGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 200 ~~~~v~ViG-~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
..|+++|.| +|-+|.++|..|.+.|.+|+++.|..
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 358999998 68999999999999999999998864
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.29 E-value=1 Score=35.93 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=30.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.++|+|+|+|.+|.-.+..++.+|.+|..+++++
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 5799999999999999999989999999888765
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.20 E-value=0.97 Score=35.35 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC--cEEEEeeC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGS--TVDLLFRK 233 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv~~~ 233 (498)
.+++|.|||+|.+|..+|..+...+. ++.+++..
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~ 40 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence 35689999999999999999887654 68887653
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.19 E-value=0.85 Score=38.39 Aligned_cols=31 Identities=23% Similarity=0.125 Sum_probs=26.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGS-TVDLLFRK 233 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~ 233 (498)
.++|||+|+.|+.+|..+++.|. .|.+++..
T Consensus 5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~ 36 (238)
T d1aoga1 5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ 36 (238)
T ss_dssp SEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence 58999999999999999999875 57777753
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=80.01 E-value=0.63 Score=39.57 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=27.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKE 234 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~ 234 (498)
.++|||+|+.|+.+|..++++|. .|.+++...
T Consensus 5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~ 37 (240)
T d1feca1 5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK 37 (240)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence 68999999999999999999875 688888654
|