Citrus Sinensis ID: 042587

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MLLGLLSSLIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDEQEPSANTRFLSFPDSAALNATAATLTISTCV
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEccccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccccccccccccccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
MLLGLLSSLIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMagdglscaHGVFRVLEdlvldeqepsantrflsfpdsaalnaTAATLTISTCV
Flexible Loop (DISEMBL)
MLLGLLSSLIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDEQEPSANTRFLSFPDSAALNATAATLTISTCV
Low Complexity Region (SEG)
MLLGLLSSLIFAHIFRDHEtlsvliilsvfiifltsiRSVLILGLMAGDGLSCAHGVFRVLEDLVLDEQEPSANTRFLSFPDSaalnataatltISTCV
Disordered region (IsUnstruct)
**LGLLSSLIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLD*********FLSF*******************
Disordered Region (DISOPRED)
MLLGLLSSLIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDEQEPSANTRF****************TISTCV
Disordered Region (DISEMBL)
MLLGLLSSLIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDEQEPSANTRFLSFPDSAALNATAATLTISTCV
Disordered Region (DISPRO)
MLLGLLSSLIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDEQ*******F****DSA*LNATAATLTISTCV
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLGLLSSLIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDEQEPSANTRFLSFPDSAALNATAATLTISTCV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
O80915	220	PRA1 family protein B4 OS	yes	no	0.717	0.322	0.569	1e-15
Q9LYN0	209	PRA1 family protein B1 OS	no	no	0.717	0.339	0.458	1e-10
Q9FLB6	217	PRA1 family protein B3 OS	no	no	0.717	0.327	0.541	4e-10
Q9SIY7	213	PRA1 family protein B2 OS	no	no	0.717	0.333	0.458	5e-10
Q9M012	223	PRA1 family protein B5 OS	no	no	0.717	0.318	0.472	8e-10
Q9LYQ4	216	PRA1 family protein B6 OS	no	no	0.626	0.287	0.419	3e-05

>sp|O80915|PR1B4_ARATH PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           ++F   F D ETL  LI+ S+F+IFLT + SVL+  +M G  L CAHG FR  EDL LDE
Sbjct: 133 VLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDE 192

Query: 69  QEPSANTRFLSF 80
           QEP+A T FLSF
Sbjct: 193 QEPAA-TGFLSF 203

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN0|PR1B1_ARATH PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           ++F   F D ETL  L++ ++ ++F+TS+ S+L   LM G  + C HG F V +DL LDE
Sbjct: 123 VVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDE 182

Query: 69  QEPSANTRFLSF 80
           QEP AN   LSF
Sbjct: 183 QEP-ANAGLLSF 193

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB6|PR1B3_ARATH PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           ++    F D ETL VL+IL++ ++FLTS+ S+L   LM G G+ C HG FRV EDL LD+
Sbjct: 126 VVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDD 185

Query: 69  QEPSANTRFLSF 80
           QEP ANT  LSF
Sbjct: 186 QEP-ANTGLLSF 196

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIY7|PR1B2_ARATH PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           ++F   F D ETL  L++ ++ ++F+TS+ S+L   L  G  + C HG FRV +DL LDE
Sbjct: 125 VLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDE 184

Query: 69  QEPSANTRFLSF 80
           QEP AN   LSF
Sbjct: 185 QEP-ANAGLLSF 195

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M012|PR1B5_ARATH PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           ++F   F ++ETL  LI+ ++ +IF TS+ SVLI  LM G    C HG FR  +DL LDE
Sbjct: 133 ILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDE 192

Query: 69  QEPSANTRFLSF 80
           Q+  A + FLSF
Sbjct: 193 QD-HAASGFLSF 203

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYQ4|PR1B6_ARATH PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           +I    F D ETL +L + +V ++F+TS+ S+L+  L  G      HG FR  EDL L+E
Sbjct: 123 VIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEE 182

Query: 69  QE 70
           QE
Sbjct: 183 QE 184

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
297827413	220	prenylated rab acceptor family protein [	0.717	0.322	0.569	2e-14
356554689	215	PREDICTED: PRA1 family protein B4-like [	0.797	0.367	0.489	3e-14
15224494	220	PRA1 family protein B4 [Arabidopsis thal	0.717	0.322	0.569	4e-14
224091050	222	predicted protein [Populus trichocarpa]	0.858	0.382	0.534	6e-14
356501201	215	PREDICTED: PRA1 family protein B4-like [	0.797	0.367	0.478	7e-14
255571473	221	Prenylated Rab acceptor protein, putativ	0.727	0.325	0.569	8e-14
118481196	224	unknown [Populus trichocarpa]	0.717	0.316	0.535	2e-13
118487362	226	unknown [Populus trichocarpa]	0.717	0.314	0.535	2e-13
224140495	280	predicted protein [Populus trichocarpa]	0.717	0.253	0.535	3e-13
356496255	219	PREDICTED: PRA1 family protein B4-like [	0.909	0.410	0.451	3e-13

>gi|297827413|ref|XP_002881589.1| prenylated rab acceptor family protein [Arabidopsis lyrata subsp. lyrata] gi|297327428|gb|EFH57848.1| prenylated rab acceptor family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           ++F   F D ETL  LI+ S+F+IFLT + SVL+  +M G  L CAHG FR  EDL LDE
Sbjct: 133 VVFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMVGVALICAHGAFRAPEDLFLDE 192

Query: 69  QEPSANTRFLSF 80
           QEP+A T FLSF
Sbjct: 193 QEPAA-TGFLSF 203

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554689|ref|XP_003545676.1| PREDICTED: PRA1 family protein B4-like [Glycine max]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 62/94 (65%), Gaps = 15/94 (15%)

Query: 1   MLLGLLSSLIFAHIFR--------------DHETLSVLIILSVFIIFLTSIRSVLILGLM 46
           +L GLL+S  F ++FR              D ETL +L++L+VF+IFLTS+ S+LI  LM
Sbjct: 107 VLFGLLASWSFLYLFRPSDQPVVLFGRTFADRETLGILVVLTVFVIFLTSVGSLLISALM 166

Query: 47  AGDGLSCAHGVFRVLEDLVLDEQEPSANTRFLSF 80
            G  + CAHG FRV EDL LD+QEP+++  FLSF
Sbjct: 167 VGLAIVCAHGAFRVPEDLFLDDQEPNSSG-FLSF 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224494|ref|NP_181370.1| PRA1 family protein B4 [Arabidopsis thaliana] gi|75099986|sp|O80915.1|PR1B4_ARATH RecName: Full=PRA1 family protein B4; Short=AtPRA1.B4 gi|3395436|gb|AAC28768.1| unknown protein [Arabidopsis thaliana] gi|38454104|gb|AAR20746.1| At2g38360 [Arabidopsis thaliana] gi|45592910|gb|AAS68109.1| At2g38360 [Arabidopsis thaliana] gi|110738045|dbj|BAF00957.1| hypothetical protein [Arabidopsis thaliana] gi|330254433|gb|AEC09527.1| PRA1 family protein B4 [Arabidopsis thaliana]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           ++F   F D ETL  LI+ S+F+IFLT + SVL+  +M G  L CAHG FR  EDL LDE
Sbjct: 133 VLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDE 192

Query: 69  QEPSANTRFLSF 80
           QEP+A T FLSF
Sbjct: 193 QEPAA-TGFLSF 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091050|ref|XP_002309160.1| predicted protein [Populus trichocarpa] gi|118485492|gb|ABK94601.1| unknown [Populus trichocarpa] gi|222855136|gb|EEE92683.1| predicted protein [Populus trichocarpa]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 61/88 (69%), Gaps = 3/88 (3%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           ++F   + D ETL +LI LSVF++FLTS+ SV+I  L+ G G+ CAHG FRV EDL LD+
Sbjct: 129 VLFGRTYSDRETLGILIALSVFVVFLTSVGSVIISALLVGVGIVCAHGAFRVPEDLFLDD 188

Query: 69  QEPSANTRFL-SFPDSAALN--ATAATL 93
              +ANT FL SF  SAA N  ++AA L
Sbjct: 189 VPENANTGFLSSFLGSAASNVVSSAAPL 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501201|ref|XP_003519415.1| PREDICTED: PRA1 family protein B4-like [Glycine max]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 62/94 (65%), Gaps = 15/94 (15%)

Query: 1   MLLGLLSSLIFAHIFR--------------DHETLSVLIILSVFIIFLTSIRSVLILGLM 46
           +L GLL+S  F ++FR              D ETL +L++L+VF+IFLTS+ S+LI  LM
Sbjct: 107 VLFGLLASWSFLYLFRPSDQPLVLFGRTFADRETLGILVVLTVFVIFLTSVGSLLISALM 166

Query: 47  AGDGLSCAHGVFRVLEDLVLDEQEPSANTRFLSF 80
            G  + C+HG FRV EDL LD+QEP+++  FLSF
Sbjct: 167 VGLAIVCSHGAFRVPEDLFLDDQEPNSSG-FLSF 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571473|ref|XP_002526684.1| Prenylated Rab acceptor protein, putative [Ricinus communis] gi|223533984|gb|EEF35706.1| Prenylated Rab acceptor protein, putative [Ricinus communis]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 51/72 (70%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           ++F   F D ETL +LI+ SV ++FLTS+ SVLI  LM G  +  AHG FRV EDL LD+
Sbjct: 129 VLFGRTFSDRETLGLLIVFSVVVVFLTSVGSVLISALMVGLAIVFAHGAFRVPEDLFLDD 188

Query: 69  QEPSANTRFLSF 80
           QEP+A T FLSF
Sbjct: 189 QEPAAATGFLSF 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481196|gb|ABK92549.1| unknown [Populus trichocarpa]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 53/71 (74%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           ++F   F D ETL +LI+LSVF++FLT++ SV+I  L+ G G+ CAHG FRV EDL LD+
Sbjct: 131 VLFGRTFSDRETLGILIVLSVFVVFLTNVGSVIISALLVGVGIVCAHGAFRVPEDLFLDD 190

Query: 69  QEPSANTRFLS 79
            + +A+T FLS
Sbjct: 191 VQENASTGFLS 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487362|gb|ABK95509.1| unknown [Populus trichocarpa]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 53/71 (74%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           ++F   F D ETL +LI+LSVF++FLT++ SV+I  L+ G G+ CAHG FRV EDL LD+
Sbjct: 133 VLFGRTFSDRETLGILIVLSVFVVFLTNVGSVIISALLVGVGIVCAHGAFRVPEDLFLDD 192

Query: 69  QEPSANTRFLS 79
            + +A+T FLS
Sbjct: 193 VQENASTGFLS 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140495|ref|XP_002323618.1| predicted protein [Populus trichocarpa] gi|222868248|gb|EEF05379.1| predicted protein [Populus trichocarpa]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 53/71 (74%)

Query: 9   LIFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
           ++F   F D ETL +LI+LSVF++FLT++ SV+I  L+ G G+ CAHG FRV EDL LD+
Sbjct: 187 VLFGRTFSDRETLGILIVLSVFVVFLTNVGSVIISALLVGVGIVCAHGAFRVPEDLFLDD 246

Query: 69  QEPSANTRFLS 79
            + +A+T FLS
Sbjct: 247 VQENASTGFLS 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496255|ref|XP_003516984.1| PREDICTED: PRA1 family protein B4-like [Glycine max]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 14/104 (13%)

Query: 1   MLLGLLSSLIFAHIFR--------------DHETLSVLIILSVFIIFLTSIRSVLILGLM 46
           +L+GLL+S  F ++FR              D ETL++L   +VF++FLTS+ SVL+  LM
Sbjct: 108 LLVGLLASWTFLYLFRPSDQPLVILGRTFSDFETLALLSAFTVFVVFLTSVGSVLVSALM 167

Query: 47  AGDGLSCAHGVFRVLEDLVLDEQEPSANTRFLSFPDSAALNATA 90
            G  + C HG FRV EDL LD+Q+ S  T FLSF    A +ATA
Sbjct: 168 LGVAVVCLHGAFRVPEDLFLDDQDNSQATGFLSFLRGPAASATA 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
TAIR|locus:2057197	220	PRA1.B4 "AT2G38360" [Arabidops	0.717	0.322	0.430	1.6e-08
TAIR|locus:2153589	217	PRA1.B3 "AT5G05380" [Arabidops	0.717	0.327	0.402	1.7e-07
TAIR|locus:2078371	209	PRA1.B1 "AT3G56110" [Arabidops	0.717	0.339	0.375	2.2e-06
TAIR|locus:2063120	213	PRA1.B2 "AT2G40380" [Arabidops	0.717	0.333	0.375	4e-06
TAIR|locus:2149815	223	PRA1.B5 "AT5G01640" [Arabidops	0.717	0.318	0.361	7.8e-06

TAIR|locus:2057197 PRA1.B4 "AT2G38360" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 31/72 (43%), Positives = 36/72 (50%)

Query:     9 LIFAHIFRDHEXXXXXXXXXXXXXXXXXXRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
             ++F   F D E                   SVL+  +M G  L CAHG FR  EDL LDE
Sbjct:   133 VLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDE 192

Query:    69 QEPSANTRFLSF 80
             QEP+A T FLSF
Sbjct:   193 QEPAA-TGFLSF 203

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2153589 PRA1.B3 "AT5G05380" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 29/72 (40%), Positives = 34/72 (47%)

Query:     9 LIFAHIFRDHEXXXXXXXXXXXXXXXXXXRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
             ++    F D E                   S+L   LM G G+ C HG FRV EDL LD+
Sbjct:   126 VVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDD 185

Query:    69 QEPSANTRFLSF 80
             QEP ANT  LSF
Sbjct:   186 QEP-ANTGLLSF 196

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

TAIR|locus:2078371 PRA1.B1 "AT3G56110" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 27/72 (37%), Positives = 32/72 (44%)

Query:     9 LIFAHIFRDHEXXXXXXXXXXXXXXXXXXRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
             ++F   F D E                   S+L   LM G  + C HG F V +DL LDE
Sbjct:   123 VVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDE 182

Query:    69 QEPSANTRFLSF 80
             QEP AN   LSF
Sbjct:   183 QEP-ANAGLLSF 193

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2063120 PRA1.B2 "AT2G40380" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 27/72 (37%), Positives = 32/72 (44%)

Query:     9 LIFAHIFRDHEXXXXXXXXXXXXXXXXXXRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
             ++F   F D E                   S+L   L  G  + C HG FRV +DL LDE
Sbjct:   125 VLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDE 184

Query:    69 QEPSANTRFLSF 80
             QEP AN   LSF
Sbjct:   185 QEP-ANAGLLSF 195

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2149815 PRA1.B5 "AT5G01640" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 26/72 (36%), Positives = 34/72 (47%)

Query:     9 LIFAHIFRDHEXXXXXXXXXXXXXXXXXXRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE 68
             ++F   F ++E                   SVLI  LM G    C HG FR  +DL LDE
Sbjct:   133 ILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDE 192

Query:    69 QEPSANTRFLSF 80
             Q+ +A+  FLSF
Sbjct:   193 QDHAASG-FLSF 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.143   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       99        70   0.00091  102 3  11 22  0.39    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  460 (49 KB)
  Total size of DFA:  80 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.45u 0.15s 6.60t   Elapsed:  00:00:01
  Total cpu time:  6.45u 0.15s 6.60t   Elapsed:  00:00:01
  Start:  Fri May 10 15:14:03 2013   End:  Fri May 10 15:14:04 2013

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	99
pfam03208	153	pfam03208, PRA1, PRA1 family protein	2e-07

>gnl|CDD|190565 pfam03208, PRA1, PRA1 family protein

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 10  IFAHIFRDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDEQ 69
           +F   F D + L  L+++SV ++FLTS  SVL+  L AG  L  AH  FR+  DL LDE 
Sbjct: 88  LFGRTFSDRQVLIGLLVVSVPLLFLTSAGSVLLWLLGAGLLLVLAHAAFRLRNDLFLDEN 147

Query: 70  EP 71
           E 
Sbjct: 148 EA 149

This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18. Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	99.93
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	99.07

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.9e-26  Score=174.12  Aligned_cols=81  Identities=36%  Similarity=0.563  Sum_probs=77.8

Q ss_pred             ChhHHHHHHHHHHHh------------cChhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCCCccccc
Q 042587            1 MLLGLLSSLIFAHIF------------RDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLDE   68 (99)
Q Consensus         1 vll~l~aaWlfLYf~------------sDr~vL~~L~v~Tv~~l~lT~v~~nl~~al~ig~~lV~~HaAfR~~dDLFlDe   68 (99)
                      +++++.++|+||||+            |||+++++|+++|++++|+|++++|++.++++|+++|+.|||||+|||||+||
T Consensus        94 vl~~lv~~w~~LY~~rd~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~Haafr~~ddLF~de  173 (187)
T KOG3142|consen   94 VLLALVAAWLFLYFLRDEPLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLIHAAFRNTDDLFLDE  173 (187)
T ss_pred             HHHHHHHHHHheeeecCCCeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhHHHHhChHhhhhhh
Confidence            468899999999999            99999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeecC
Q 042587           69 QEPSANTRFLSFPD   82 (99)
Q Consensus        69 ~e~~~~~gllSfl~   82 (99)
                      ||+. ++|++|+.+
T Consensus       174 e~~~-~~gl~s~~~  186 (187)
T KOG3142|consen  174 EEAA-ASGLLSFSS  186 (187)
T ss_pred             hhcc-cccccccCC
Confidence            9998 789999875

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=99.07  E-value=3.3e-10  Score=80.16  Aligned_cols=71  Identities=27%  Similarity=0.269  Sum_probs=62.2

Q ss_pred             hhHHHHHHHHHHHh--------------cChhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCCCcccc
Q 042587            2 LLGLLSSLIFAHIF--------------RDHETLSVLIILSVFIIFLTSIRSVLILGLMAGDGLSCAHGVFRVLEDLVLD   67 (99)
Q Consensus         2 ll~l~aaWlfLYf~--------------sDr~vL~~L~v~Tv~~l~lT~v~~nl~~al~ig~~lV~~HaAfR~~dDLFlD   67 (99)
                      ++.+..+|.++|..              +++.++..+.++++..+++++.+.+++.++++++.++++||+||+|||.+-+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~~~~~  145 (153)
T PF03208_consen   66 LLLVVALWAFIYKSRKENDPIVIGGRKISPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDLKNKE  145 (153)
T ss_pred             HHHHHHHHHHHhhhcccCcchhccCcccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            34566788888876              6677889999999999999999999999999999999999999999998877


Q ss_pred             cCCCC
Q 042587           68 EQEPS   72 (99)
Q Consensus        68 e~e~~   72 (99)
                      |+|..
T Consensus       146 e~~~~  150 (153)
T PF03208_consen  146 ENEIE  150 (153)
T ss_pred             hhHHh
Confidence            77654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00