Citrus Sinensis ID: 042589

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
KGEADDEENPQPKSSTPQDKSKKDRKEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVKATTKQAHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVDRMVAILAMVPRPWRFYLLSGL
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHccccccccHHHHHHHHcccccccHHHHHHHHcHHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHcccccHHHHHHcHHcccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHccHHHHccccccccEEHHHHHccHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHEEEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccc
Coil and Loop (DISEMBL)
kgeaddeenpqpksstpqdkskkdrkedqlfpsdYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDElvddrnphvykyvyngrepristfgqdvnaftaretppdpntykkknarrsrrkeTPILVAAKMGVTEMVKKILDTFpvaiwdldpgekNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAAtygdhrpwhtLGAALQMHWEISWFQFVKATTKQAHRALVQEGREWLTKTSESCSVLAAFIATVAFAtsaavpggvdqgsgkpilenkpvfNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSghsflltnefrsaaypiyaaaWLPVTFFALAYLPLYVDRMVAILAMVPRPWRFYLLSGL
Flexible Loop (DISEMBL)
kgeaddeenpqpksstpqdkskkdrkedqlfpsdYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVfdelvddrnpHVYKYVyngrepristfGQDVNAftaretppdpntykkknarrsrrketpilvaakmgvtEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVKATTKQAHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVDRMVAILAMVPRPWRFYLLSGL
Low Complexity Region (SEG)
KGEADDEENPQPKSSTPQDKSKKDRKEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVKATTKQAHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNifaisslialsssvtvliiFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVDRMVAILAMVPRPWRFYLLSGL
Disordered region (IsUnstruct)
******************************FPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVN****************************ILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVKATTKQAHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVDRMVAILAMVPRPWRFYLL***
Disordered Region (DISOPRED)
*********************************DYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPP*************RRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVKATTKQAHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVDRMVAILAMVPRPWRFYLLSGL
Disordered Region (DISEMBL)
***************************DQLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPN***********RKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVKATTKQAHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVDRMVAILAMVPRPWRFYLLSGL
Disordered Region (DISPRO)
****************************QLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTA******PNTYKKK**RRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVKATTKQAHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVDRMVAILAMVPRPWRFYLLSGL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KGEADDEENPQPKSSTPQDKSKKDRKEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVKATTKQAHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVDRMVAILAMVPRPWRFYLLSGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	429	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.529	0.384	0.216	7e-06

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 115/305 (37%), Gaps = 78/305 (25%)

Query: 135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRS 194
           RS  K   + +AA+ G  E++K +L   P     +D   +  L +A++ + + V  LL  
Sbjct: 229 RSNNK-NALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLD 287

Query: 195 REELGETIFWQVDNLGNSALHLAATYG---------------------DHRPWHTLGAAL 233
            +     I  Q D   N+ALH+A                         DH+    +   L
Sbjct: 288 ADP---AIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGL 344

Query: 234 QMHWEISW-------------------------------------FQFVKATTKQAH--- 253
            +  E S+                                      +  K T K  H   
Sbjct: 345 PLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNIS 404

Query: 254 RALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAI 313
           + L +  RE +   + S +V+A   ATVAFA    VPGG D   G  ++  +  F IF I
Sbjct: 405 KELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGSAVVVGRASFKIFFI 463

Query: 314 SSLIALSSSVTVLIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHS 373
            + +AL +S+ V+++ + ++    +    V+ +  +L+             L S C+  +
Sbjct: 464 FNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMW------------LASMCTSVA 511

Query: 374 FLLTN 378
           FL ++
Sbjct: 512 FLASS 516

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
359495447	733	PREDICTED: uncharacterized protein LOC10	0.969	0.567	0.427	1e-96
359495445	835	PREDICTED: uncharacterized protein LOC10	0.946	0.486	0.451	1e-96
359479721	749	PREDICTED: uncharacterized protein LOC10	0.955	0.547	0.429	2e-96
357447499	693	Serine/threonine protein phosphatase 6 r	0.920	0.569	0.472	2e-94
147855983	1513	hypothetical protein VITISV_044165 [Viti	0.974	0.276	0.419	4e-92
147779690	869	hypothetical protein VITISV_044420 [Viti	0.944	0.466	0.417	2e-91
255554112	786	ankyrin repeat-containing protein, putat	0.687	0.375	0.585	2e-91
356546478	647	PREDICTED: uncharacterized protein LOC10	0.925	0.613	0.456	8e-91
356546480	652	PREDICTED: uncharacterized protein LOC10	0.925	0.608	0.456	2e-90
224066419	360	predicted protein [Populus trichocarpa]	0.694	0.827	0.548	4e-90

>gi|359495447|ref|XP_002274376.2| PREDICTED: uncharacterized protein LOC100254555 [Vitis vinifera]

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 216/505 (42%), Positives = 282/505 (55%), Gaps = 89/505 (17%)

Query: 2   GEADDEENPQPKSSTPQDKSKKDR---KEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYA 58
           GE  D ENP+   + PQ +  +        Q +P +Y  CF    I LV +  L ++   
Sbjct: 224 GEHTDAENPKEGQAGPQHQGHQSNIGADGKQRYPPNYGICF--EFIKLVCKGMLAILLSI 281

Query: 59  IYAGIRGIKNVREKKETHTWAIQVFDELVD----------DRNPH---------VYKYVY 99
           +  G   IK +  KK+ HTW+IQ+  EL+             +PH          + Y  
Sbjct: 282 LGFGSNKIKRIIHKKQKHTWSIQIMKELLQHTEEYKYYDTGSSPHQSPFLDEVETFLYAP 341

Query: 100 NG---REPRISTFGQD----VNAFTARETPPD----------PNT-------------YK 129
           NG     P  ST  +D      A T   +P D           NT              K
Sbjct: 342 NGVRMPSPHQSTLEEDKTTPYTAPTGSSSPKDGRMDEIKTALKNTPSKSPMEANQGLENK 401

Query: 130 KKNA----------------RRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGE 173
           K+NA                 +  +KETPIL+AAK G+ EMV++ILD FPVAI D++   
Sbjct: 402 KENAPVLNPVILAGKKTKKTEKVDKKETPILLAAKNGIAEMVREILDRFPVAIQDMNSEH 461

Query: 174 KNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAAL 233
           KN++LLA+ENRQ HVY LL +R+   +T+F  VD  GNSALHLAA   D+ PWH  GAAL
Sbjct: 462 KNMVLLAVENRQPHVYELLLNRKIQKDTVFRIVDKDGNSALHLAAMLRDNLPWHIPGAAL 521

Query: 234 QMHWEISWFQFVKATT-------------------KQAHRALVQEGREWLTKTSESCSVL 274
           QM WEI WF +VK +                     ++H+ LV++G +WL  TS+SCSV+
Sbjct: 522 QMQWEIKWFDYVKNSMPIHFFPHYNANNQTPKEVFNESHKELVEKGGKWLKATSDSCSVV 581

Query: 275 AAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILT 334
           +A IATVAFATSA VPGG+ + SGKPILE +P F IFAISSL+AL  SVT +++FL ILT
Sbjct: 582 SALIATVAFATSATVPGGIKEDSGKPILERQPAFRIFAISSLVALCFSVTSVVMFLAILT 641

Query: 335 FRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLP 394
            RYQ  DF   LPR+LLLGL+ L  SI AILVSFC+GH F+L +E + AA+P+YA   LP
Sbjct: 642 SRYQVKDFRRDLPRKLLLGLSSLFVSIAAILVSFCAGHFFVLKDELKYAAFPVYAVTCLP 701

Query: 395 VTFFALAYLPLYVDRMVAILAMVPR 419
           VTFFA+A  PLY+D + A    VP+
Sbjct: 702 VTFFAIAQFPLYLDLVWATFKKVPK 726

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495445|ref|XP_002274340.2| PREDICTED: uncharacterized protein LOC100259671 [Vitis vinifera]

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 205/454 (45%), Positives = 273/454 (60%), Gaps = 48/454 (10%)

Query: 6   DEENP---QPKSSTPQDKSKKD--RKEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYAIY 60
           D ENP   Q  +S  Q K   +   K+ QLFP +Y        I+L++ I    +   + 
Sbjct: 383 DSENPGKNQRDASQNQGKQSSNGVDKQPQLFPPNYYIS-----IELIKFI-YRAMLVVLG 436

Query: 61  AGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARE 120
            G + IK +  KKE H W+IQ+ ++L+D  +         G +P  +    + +AF   E
Sbjct: 437 LGSKQIKKIHSKKEKHLWSIQIMNKLLDSSSSEYDSSA--GSQPLTTKEADETDAFKEIE 494

Query: 121 ----------TPPDPNTYKKKNARRSR------RKETPILVAAKMGVTEMVKKILDTFPV 164
                     +  +    KKKN  +++      +KETPIL+AAK G+ EMV +IL+ FPV
Sbjct: 495 ANDTKRMKTSSENEKRQQKKKNDEKAKETDEMAKKETPILIAAKNGIVEMVVRILELFPV 554

Query: 165 AIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHR 224
           AI D++  +KN++LLA+ENRQTHVY LL  RE L ++IF  VD+ GNSALHLAA   D  
Sbjct: 555 AIHDMNSEKKNIVLLAVENRQTHVYALLLKREILKDSIFHVVDHEGNSALHLAAKLNDRH 614

Query: 225 PWHTLGAALQMHWEISWFQFVKATT-------------------KQAHRALVQEGREWLT 265
           PW   GAALQM WEI W++FVK +                     ++H  LV +G +WL 
Sbjct: 615 PWRIPGAALQMQWEIKWYEFVKNSMPIHFFVRYNNNNKTAREVFTESHADLVDKGGKWLN 674

Query: 266 KTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTV 325
            TS SCSV+AA IATVAFATSA VPGGV +G G P LEN+P FN+F+ISSLIAL  SVT 
Sbjct: 675 DTSNSCSVVAALIATVAFATSATVPGGVKEGIGVPTLENQPAFNVFSISSLIALCFSVTS 734

Query: 326 LIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAY 385
           +++FL ILT R+QE DF   LP++LL GL+ L  SI AILVSFC+GH F+L +E +  A+
Sbjct: 735 VVMFLAILTSRHQEKDFGSDLPKKLLFGLSSLFISIAAILVSFCAGHFFVLKDELKYFAF 794

Query: 386 PIYAAAWLPVTFFALAYLPLYVDRMVAILAMVPR 419
           PIYA   LPVTFFA+   PLY+D + A    VP+
Sbjct: 795 PIYAVTCLPVTFFAVMQFPLYLDLICATFKKVPQ 828

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479721|ref|XP_002272096.2| PREDICTED: uncharacterized protein LOC100255529 [Vitis vinifera]

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 211/491 (42%), Positives = 275/491 (56%), Gaps = 81/491 (16%)

Query: 2   GEADDEENPQPKSSTPQDKSKKDRKEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYA 61
           G   D E+P    S  + K +   +  QL PS+Y  CF   II  V +  L ++ +    
Sbjct: 259 GGQADLEDPSGNQSNMKAKGELQSQGHQLIPSNYHTCF--NIIKFVFKAILVILGF---- 312

Query: 62  GIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPR---------------- 105
           G + +K VR+KKE H WA Q+ DEL+   +   Y+Y  NGR P+                
Sbjct: 313 GFKAVKKVRQKKEKHVWAAQILDELL--CHASFYEYEDNGRNPQQPSQKKDADTTPYSIS 370

Query: 106 ---------------------------ISTFGQDVNAFTARETPP-----DPNTYKKKNA 133
                                       +  G+D  A   R +P      + N   KKN 
Sbjct: 371 DDHGVSFDNTLESQHLPGGTAAQPSSATNQQGEDKGAPADRSSPEAQRKQNDNGKNKKNE 430

Query: 134 RRSR------RKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTH 187
           +  +      RKETP+LVAAK GV E+V++IL+ FPVAI D D  +KN++LLA+E RQ H
Sbjct: 431 QDKKKPSEMERKETPLLVAAKNGVVEIVERILELFPVAIHDKDYQKKNIVLLAVEYRQPH 490

Query: 188 VYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVKA 247
           VY LL  R+ L + +F  VD  GNSALHLAA  G+++PW   GAALQM WEI W++FVK 
Sbjct: 491 VYELLVKRKVLKDAVFRHVDIDGNSALHLAAMLGENKPWLIPGAALQMQWEIKWYEFVKR 550

Query: 248 TTKQ-------------------AHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAA 288
           +  Q                    H  LVQ G EWL KTSESCSV+AA IATVAFATS+ 
Sbjct: 551 SVPQHFFVRCNQKGETAKDIFTEKHMDLVQAGGEWLFKTSESCSVVAALIATVAFATSST 610

Query: 289 VPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMALPR 348
           VPGGV +  G P LE++P F+IFAISSL+AL  SV  +I+FL ILT RYQE DF + LPR
Sbjct: 611 VPGGVKEKVGTPTLEDEPAFDIFAISSLVALCFSVNAVIMFLAILTSRYQERDFRIYLPR 670

Query: 349 ELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVD 408
           +LL+GLT L  SI ++L+SFC+GH F+L ++ +  A  +YA   LPV FFA+A  PLY D
Sbjct: 671 KLLVGLTSLFVSIASMLISFCAGHYFVLMDKLQYTAILVYAVTCLPVIFFAVAQFPLYFD 730

Query: 409 RMVAILAMVPR 419
            M A    VP+
Sbjct: 731 LMWATFKKVPQ 741

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447499|ref|XP_003594025.1| Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula] gi|355483073|gb|AES64276.1| Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula]

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 205/434 (47%), Positives = 278/434 (64%), Gaps = 39/434 (8%)

Query: 6   DEENPQPKSSTPQDKSKKDRKEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRG 65
           DEEN   + S  Q+++KK++K +  FP ++       I  L+  +++ +I + +  G   
Sbjct: 271 DEENHCSRKSE-QEQAKKEKK-NHWFPPNWESM----IRILILAMKVFLIIFGV--GATW 322

Query: 66  IKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQ-DVNAFTARETPPD 124
           ++ ++ KKE H  A QV +EL+  ++  +YKY + G  PR+   G  D++   +      
Sbjct: 323 VEKIQRKKEKHIRAKQVMNELI--QHASLYKYDFTGPSPRVEELGGGDIDKIKS------ 374

Query: 125 PNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENR 184
            NT  +      RR  +PIL+AAKMGVTEM++ ILD +PVAI D+D   KNV+LLAIENR
Sbjct: 375 -NT--ENEVIEKRRMVSPILIAAKMGVTEMIENILDMYPVAIHDVDSQNKNVVLLAIENR 431

Query: 185 QTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQF 244
           Q HVY+LL  R  + ET F QVD  GNSALHLAATY   +PW   GAA+QM WE  W++ 
Sbjct: 432 QPHVYSLLNKRSVIKETAFRQVDINGNSALHLAATYRRFKPWRVPGAAMQMQWEYKWYKL 491

Query: 245 VK---------------ATTKQ----AHRALVQEGREWLTKTSESCSVLAAFIATVAFAT 285
           VK                T KQ     H  L +EG +WLTKT+ESCSV+AA +ATVAF T
Sbjct: 492 VKNSMPPNFYERYNKDGKTAKQVFIDTHAPLTKEGSKWLTKTAESCSVVAALVATVAFTT 551

Query: 286 SAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMA 345
           S A+PGG DQ SG P+L  KP F ++A++SL+AL SSVT L++FL ILT R++E DFV+ 
Sbjct: 552 STAIPGGPDQESGMPLLLEKPAFKLYAVASLVALCSSVTALVLFLSILTSRFEEKDFVID 611

Query: 346 LPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPL 405
           LPR+LL+GLT L TSI ++LVSFC+GH F++  + R A YPIYAA  LPV+FFAL  LPL
Sbjct: 612 LPRKLLVGLTTLFTSIASVLVSFCAGHFFIVEAQMRFAVYPIYAATCLPVSFFALVQLPL 671

Query: 406 YVDRMVAILAMVPR 419
           Y D  +A+   VP+
Sbjct: 672 YFDLSLAMCRKVPQ 685

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855983|emb|CAN82817.1| hypothetical protein VITISV_044165 [Vitis vinifera]

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 210/501 (41%), Positives = 273/501 (54%), Gaps = 83/501 (16%)

Query: 2   GEADDEENPQPKSSTPQDKSKKDRKEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYA 61
           G   D E+P    S  + K +   +  QL PS+Y  CF   II  V +  L ++ +    
Sbjct: 335 GGQADLEDPSGNQSNMKAKGELQSQGHQLIPSNYHTCF--NIIKFVFKAILVILGF---- 388

Query: 62  GIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPR---------------- 105
           G + +K VR+KKE H WA Q+ DEL+   +   Y+Y  NGR P+                
Sbjct: 389 GFKAVKKVRQKKEKHVWAAQILDELL--CHASFYEYEDNGRNPQQPSQKKDADTTPYSIS 446

Query: 106 ---------------------------ISTFGQDVNAFTARETPP-----DPNTYKKKNA 133
                                       +  G+D  A   + +P      + N   KKN 
Sbjct: 447 DDHGVSFDNTLESQHLXXGTAAQPSSAXNQQGEDKGAPADQSSPEAQRKQNDNGKNKKNE 506

Query: 134 RRSR------RKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTH 187
           +  +      RKET +LVAAK GV E+V++IL+ FPVAI D D  +KN++LLA+E RQ H
Sbjct: 507 QDKKKPSEMERKETXLLVAAKNGVVEIVERILELFPVAIHDKDYQKKNIVLLAVEYRQPH 566

Query: 188 VYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVKA 247
           VY LL  R+ L + +F  VD  GNSALHLAA  G+++PW   GAALQM WEI W++FVK 
Sbjct: 567 VYELLVKRKVLKDAVFRHVDIDGNSALHLAAMLGENKPWLIPGAALQMQWEIKWYEFVKR 626

Query: 248 TTKQ-------------------AHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAA 288
           +  Q                    H  LVQ G EWL KTSESCSV+ A IATVAFATS  
Sbjct: 627 SVPQHFFVRCNXKGETAKDIFTEXHMDLVQAGGEWLFKTSESCSVVXALIATVAFATSXT 686

Query: 289 VPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMALPR 348
            PGGV +  G P LE++P F+IFAISSL+AL  SV  +I+FL ILT R QE DF + LPR
Sbjct: 687 XPGGVKEBVGTPTLEDEPAFDIFAISSLVALCFSVNAVIMFLAILTSRXQERDFRIYLPR 746

Query: 349 ELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVD 408
           +LL+GLT L  SI ++L+SFC+GH F+L ++    A  +YA   LPV FFA+A  PLY D
Sbjct: 747 KLLVGLTSLFVSIASMLISFCAGHYFVLMDKLXYTAILVYAVTCLPVIFFAVAQFPLYFD 806

Query: 409 RMVAILAMVPRPWRFYLLSGL 429
            M A    VP+  R Y L  L
Sbjct: 807 LMWATFKKVPQ--RSYKLGQL 825

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779690|emb|CAN60672.1| hypothetical protein VITISV_044420 [Vitis vinifera]

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 194/465 (41%), Positives = 261/465 (56%), Gaps = 60/465 (12%)

Query: 8   ENPQP-KSSTPQDKSKKDRKEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGI 66
           ENP+   +S   ++  +  +EDQL P +Y  CF     + V+ I    +   +  G R +
Sbjct: 405 ENPEEGNASASPNQGNEAAEEDQLCPPNYYTCF-----EFVKFI-YRAMMVVLGIGARDV 458

Query: 67  KNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRIS--TFGQDVNAFTARETPPD 124
           + +R  KE H W+ Q+  EL+   + + Y Y   G +P +   T  +D+ A    E    
Sbjct: 459 QKIRVMKEKHMWSAQIMKELLHCASXYEYDYSA-GSQPELQNKTNKEDLTAALXEENEQK 517

Query: 125 PNTYKKKNARR-------------------------------SRRKETPILVAAKMGVTE 153
               +  + +R                                 +KETPIL+AAK G+TE
Sbjct: 518 XQKDQXXDGKRLTFNMKDKGYVFDVDFSXGEVTLGPVEGNKQKDKKETPILIAAKNGITE 577

Query: 154 MVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSA 213
           MV +ILD  PVAI D     KN++++A+ENRQ +VYNLL  +  L ET+F  VD+ GNSA
Sbjct: 578 MVMEILDCSPVAIHDKTSANKNIVMVAVENRQPNVYNLLLEKRXLIETLFNAVDDEGNSA 637

Query: 214 LHLAATYGDHRPWHTLGAALQMHWEISWFQFVK---------------ATTKQ----AHR 254
           LHL A    H+PW   GAALQM WEI W+++V+                T +Q     H 
Sbjct: 638 LHLVAMXTHHQPWLIPGAALQMQWEIKWYKYVEDSMPMHFSMRYNKANKTARQIFTEKHE 697

Query: 255 ALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAIS 314
            LV+ G  WL  TS SCSV+AA IATVAFATSA VPGG+++G+G P LE KP FN+F+IS
Sbjct: 698 ELVKNGSAWLNTTSNSCSVVAALIATVAFATSATVPGGINEGNGTPTLEXKPAFNVFSIS 757

Query: 315 SLIALSSSVTVLIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSF 374
           SLIAL  SV  L++FL  LT R+QE DF   LP ++L GL+ L  SI A+LVSFC+GH F
Sbjct: 758 SLIALCXSVNSLVMFLAXLTSRHQERDFGXNLPNKMLFGLSSLFISIGAMLVSFCAGHFF 817

Query: 375 LLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVDRMVAILAMVPR 419
           LL +E + AA+PIYA   LPV FFA+   PLY+D M A    VP+
Sbjct: 818 LLKDELKYAAFPIYAVTCLPVAFFAVMQFPLYLDLMWATFRKVPK 862

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554112|ref|XP_002518096.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223542692|gb|EEF44229.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 185/316 (58%), Positives = 229/316 (72%), Gaps = 21/316 (6%)

Query: 128 YKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTH 187
           ++KK  ++ R+KETPILVAAK+G+TE+V KILDT+P+AI DLD  EKN +LLA+E+RQT 
Sbjct: 468 FEKKETQKFRKKETPILVAAKVGITEIVDKILDTYPLAIQDLDSDEKNAVLLAVEHRQTD 527

Query: 188 VYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVK- 246
           VYNLL  R  + E++F Q+D  GNSALHLAA  GD+RP    GAALQM WEI W++FVK 
Sbjct: 528 VYNLLLKRAMVKESVFRQLDKHGNSALHLAAKLGDYRPKLVPGAALQMQWEIKWYKFVKN 587

Query: 247 --------------ATTKQ----AHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAA 288
                          T K+     H+ LV +G EWLTKTSESCSV+AA +ATVAFATSA 
Sbjct: 588 SMPPHFFVKHNSQGQTPKEIFIVTHKELVAKGSEWLTKTSESCSVVAALVATVAFATSAT 647

Query: 289 VPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMALPR 348
           +PGGV+  +G PILEN+P F +FAI+SL+AL  SVT +I FL ILT RYQENDF M LPR
Sbjct: 648 IPGGVNPENGAPILENEPAFEVFAIASLVALCFSVTAVIFFLTILTSRYQENDFAMDLPR 707

Query: 349 ELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVD 408
           +L LGLT L TSI +IL+SFC+GH F+L    R+AAYP+YAA  LP++FFAL+ LPLY D
Sbjct: 708 KLFLGLTSLFTSIASILLSFCAGHFFVLKESLRTAAYPLYAATCLPISFFALSQLPLYFD 767

Query: 409 RMVAILAMVPRPWRFY 424
              AIL  +  P R Y
Sbjct: 768 LGRAIL--LDEPQRSY 781

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546478|ref|XP_003541653.1| PREDICTED: uncharacterized protein LOC100777612 [Glycine max]

 Score =  340 bits (872), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 199/436 (45%), Positives = 271/436 (62%), Gaps = 39/436 (8%)

Query: 4   ADDEENPQPKSSTPQDKSKKDRKEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGI 63
           ++DEEN   + S  ++++KK  K+  LFP ++        I  +  + + ++      G 
Sbjct: 223 SNDEENNVSRKSE-EEQAKKLEKKRYLFPPNW-----GATIRFLTHM-MKILLIICGFGA 275

Query: 64  RGIKNVREKKETHTWAIQVFDELVDDR-NPHVYKYVYNGREPRISTFGQDVNAFTARETP 122
             I  ++ KK  H  A QV +EL+    +  +YK+ + G             +     T 
Sbjct: 276 SWIGKIQRKKVKHILAKQVMNELIQRTCSSSLYKHDHTG------------TSNINSSTS 323

Query: 123 PDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIE 182
            +  + +K   ++ RR ++PIL+AAKMGV EMV+KIL+T PVAI D+D   KNV+LLAIE
Sbjct: 324 SNNQSKEKGGFQKIRRTDSPILIAAKMGVAEMVEKILETDPVAIHDVDADNKNVVLLAIE 383

Query: 183 NRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWF 242
           NRQ HVY+LL  R  + ET F QVDN GNSALHLAATY  ++PW   GAALQM WE  W+
Sbjct: 384 NRQPHVYSLLNERSMIKETAFRQVDNQGNSALHLAATYRSYKPWRVPGAALQMQWEYKWY 443

Query: 243 QFVK---------------ATTKQ----AHRALVQEGREWLTKTSESCSVLAAFIATVAF 283
           + VK                T KQ     H  L +EG +WL+KTSESCS++AA +ATVAF
Sbjct: 444 KLVKNSMPPNFYERYNENGQTAKQVFISTHERLTKEGGKWLSKTSESCSLVAALVATVAF 503

Query: 284 ATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFV 343
            TS AVPGG +Q +G P+ + +  FNIFA++SL+AL SSVT L++FL ILT R+QE DF 
Sbjct: 504 TTSTAVPGGPNQNTGYPLFQGRLAFNIFAVASLVALCSSVTALVLFLSILTSRFQEKDFA 563

Query: 344 MALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYL 403
           M LPR+LLLGLT L TSI ++LVSFC+GH F++ +E + A YPIY A  LPV+FFA   L
Sbjct: 564 MDLPRKLLLGLTTLFTSIASVLVSFCAGHFFIVEDELKFAVYPIYVATCLPVSFFAFVQL 623

Query: 404 PLYVDRMVAILAMVPR 419
           PLY D  +A++  VP+
Sbjct: 624 PLYFDLSLAMIRKVPQ 639

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546480|ref|XP_003541654.1| PREDICTED: uncharacterized protein LOC100778153 [Glycine max]

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/436 (45%), Positives = 271/436 (62%), Gaps = 39/436 (8%)

Query: 4   ADDEENPQPKSSTPQDKSKKDRKEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGI 63
           ++DEEN   + S  ++++KK  K+  LFP ++        I  +  + + ++      G 
Sbjct: 223 SNDEENNVSRKSE-EEQAKKLEKKRYLFPPNW-----GATIQFLTHM-MKILLIICGFGA 275

Query: 64  RGIKNVREKKETHTWAIQVFDELVDDR-NPHVYKYVYNGREPRISTFGQDVNAFTARETP 122
             I  ++ KK  H  A QV +EL+    +  +YK+ + G     S+        ++    
Sbjct: 276 SWIGKIQRKKVKHILAKQVMNELIQRTCSSSLYKHDHTGTSNINSS-------PSSNNQS 328

Query: 123 PDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIE 182
            +   Y+K      RR ++PIL+AAKMGV EMV+KIL+T PVAI D+D   KNV+LLAIE
Sbjct: 329 KEKGCYQK-----IRRTDSPILIAAKMGVAEMVEKILETDPVAIHDVDADNKNVVLLAIE 383

Query: 183 NRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWF 242
           NRQ HVY+LL  R  + ET F QVDN GNSALHLAATY  ++PW   GAA+QM WE  W+
Sbjct: 384 NRQPHVYSLLNERSMIKETAFRQVDNQGNSALHLAATYRSYKPWRIPGAAMQMQWEYKWY 443

Query: 243 QFVK---------------ATTKQ----AHRALVQEGREWLTKTSESCSVLAAFIATVAF 283
           + VK                T KQ     H  L +EG +WL+KTSESCS++AA +ATVAF
Sbjct: 444 KLVKNSMPPNFYERYNENGQTAKQVFISTHERLAKEGGKWLSKTSESCSLVAALVATVAF 503

Query: 284 ATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFV 343
            TS AVPGG +Q +G P+ + +  FNIFA++SL+AL SSVT L++FL ILT R+QE DF 
Sbjct: 504 TTSTAVPGGPNQNTGYPLFQGRLAFNIFAVASLVALCSSVTALVLFLSILTSRFQEKDFA 563

Query: 344 MALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYL 403
           M LPR+LLLGLT L TSI ++LVSFC+GH F++ +E + A YPIYAA  LPV+ FA   L
Sbjct: 564 MDLPRKLLLGLTTLFTSIASVLVSFCAGHFFIVEDELKFAVYPIYAATCLPVSLFAFVQL 623

Query: 404 PLYVDRMVAILAMVPR 419
           PLY D  +A++  VP+
Sbjct: 624 PLYFDLSLAMIRKVPQ 639

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066419|ref|XP_002302098.1| predicted protein [Populus trichocarpa] gi|222843824|gb|EEE81371.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 176/321 (54%), Positives = 222/321 (69%), Gaps = 23/321 (7%)

Query: 127 TYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQT 186
           T KK  A     +ETPIL+AAK G+ EMV+KI++ FPVAI D++  +KN++LL++ENRQ 
Sbjct: 40  TTKKPKAPAMEMRETPILIAAKNGIVEMVEKIIEKFPVAINDVNAEKKNIVLLSVENRQP 99

Query: 187 HVYNLLRS--REELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQF 244
           HVY  L S  R  + E+IF QVD+ GNSALHLAAT GD +PW   GAALQM WEI WF+F
Sbjct: 100 HVYQFLLSLKRNIVKESIFRQVDSKGNSALHLAATLGDFKPWSIPGAALQMQWEIKWFEF 159

Query: 245 VKATT-------------------KQAHRALVQEGREWLTKTSESCSVLAAFIATVAFAT 285
           VK +                     + H+ LV+ G EWLT TSESCSV+AA IATVAFAT
Sbjct: 160 VKDSMPPNFFVRYNKEGKTPRDIFTETHKDLVKSGGEWLTNTSESCSVVAALIATVAFAT 219

Query: 286 SAAVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMA 345
           S+ VPGGV++ +G PILE +P F +FAISSLIAL  SVT +++FL ILT RYQE DF   
Sbjct: 220 SSTVPGGVNEITGSPILEYQPAFKMFAISSLIALCFSVTSVVMFLAILTSRYQERDFGQD 279

Query: 346 LPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPL 405
           LPR+LL+GLT L  SI ++LVSFC+GH F+L +E + AA+P+YA   LPVTFFA+A  PL
Sbjct: 280 LPRKLLVGLTSLFISIASVLVSFCTGHFFVLRDELKYAAFPVYAVTCLPVTFFAVAQFPL 339

Query: 406 YVDRMVAILAMVPRPWRFYLL 426
           Y D   A    VP+  R Y++
Sbjct: 340 YFDLTWATFKKVPQ--RSYMV 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.354	0.252	0.352	4.3e-27
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.372	0.239	0.351	5.5e-23
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.358	0.246	0.343	8.8e-21
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.372	0.461	0.291	1.4e-18
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.382	0.285	0.280	4.7e-15
TAIR|locus:2157548	480	AT5G54700 "AT5G54700" [Arabido	0.505	0.452	0.222	0.00055
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.144	0.105	0.348	0.00064

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
 Identities = 54/153 (35%), Positives = 81/153 (52%)

Query:   253 HRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNXXX 312
             H  L +EG EW+  T+ +CS +AA IATV F     VPGG+D  SG P++ N   F    
Sbjct:   429 HEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFI 488

Query:   313 XXXXXXXXXXXXXXXXFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGH 372
                             FL ILT RY  +DF+++LPR+++LG ++L  SI ++LV+F +  
Sbjct:   489 FTDTLAFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSILFISIASMLVAFITSL 548

Query:   373 SFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPL 405
             S  + ++  +  YP+   A  P   F +   PL
Sbjct:   549 SASMRHK-PALVYPLKPLASFPSLLFLMLQYPL 580

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
 Identities = 57/162 (35%), Positives = 80/162 (49%)

Query:   245 VKATTKQAHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGS-GKPILE 303
             ++  TK+ H+ L QE  +W+  T+ SCS++AA I TV FA    VPGG D  S GKP   
Sbjct:   487 IEIFTKE-HQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHL 545

Query:   304 NKPVFNXXXXXXXXXXXXXXXXXXXFLKILTFRYQENDFVMALPRELLLGLTMLITSIVA 363
                 F                    FL ILT RY  +DF++ LP +++ GL++L  SI A
Sbjct:   546 RDRRFIIFIVSDLISCFASCTSVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAA 605

Query:   364 ILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPL 405
             +L++F S    ++  E +    P    A LP   F L   PL
Sbjct:   606 MLIAFSSALFTMMGKEGKWIVAPTILFACLPALLFVLLQYPL 647

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
 Identities = 54/157 (34%), Positives = 79/157 (50%)

Query:   250 KQAHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSG-KPILENKPVF 308
             ++ H A+  E  +W+  T+ SCS++AA I TV FA    VPGG D  SG +P   ++ +F
Sbjct:   449 RKEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIF 508

Query:   309 NXXXXXXXXXXXXXXXXXXXFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSF 368
                                 FL ILT RY  +DF+ +LP  ++ GL+ L  SI A+LV+F
Sbjct:   509 VIFIVSDLISCFAACTSVLIFLGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAMLVAF 568

Query:   369 CSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPL 405
              S   F + N+    A  I+ A + P   F +   PL
Sbjct:   569 SSA-LFTIFNDPWIVAPTIFFACF-PALLFVMIQYPL 603

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
 Identities = 49/168 (29%), Positives = 80/168 (47%)

Query:   249 TKQAHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGS-----GKPILE 303
             TK+ H  L +EG +W+ +T+ +C +++  IATV FA +  +PGG D        G P   
Sbjct:   163 TKE-HDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFR 221

Query:   304 NKPVFNXXXXXXXXXXXXXXXXXXXFLKILTFRYQENDFVMALPRELLLGLTMLITSIVA 363
              +  F                    FL ILT RY E  F   LP +L+LGL  L  SI++
Sbjct:   222 KEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIIS 281

Query:   364 ILVSFCSGHSFLLTNEFR-SAAYPIYAAAWLPVTFFALAYLPLYVDRM 410
             ++++F +    +   E + S    +Y A+   ++F  L +  L+ D +
Sbjct:   282 MVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVL-HFQLWFDTL 328

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
 Identities = 48/171 (28%), Positives = 77/171 (45%)

Query:   249 TKQAHRALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGK------PIL 302
             T+Q H  L +EG  W+ +T+ +C + A  IATV FA +  +PGG D    K      P  
Sbjct:   387 TEQ-HENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGDKANTLGFPNF 445

Query:   303 ENKPVFNXXXXXXXXXXXXXXXXXXXFLKILTFRYQENDFVMALPRELLLGLTMLITSIV 362
               + +F+                   FL I T RY E DF   LP +L+ GL+ L  SI+
Sbjct:   446 RKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGLSALFISII 505

Query:   363 AILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVTFFALAYLPLYVDRMVAI 413
             +++++F      +   +   +   I   A L    FA  Y  L+ + + ++
Sbjct:   506 SMILAFTFSMILIRVEKASLSLVLISCLASLTALTFAYLYFHLWFNTLRSV 556

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157548 AT5G54700 "AT5G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00055, P = 0.00055
 Identities = 52/234 (22%), Positives = 93/234 (39%)

Query:   141 TPILVAAKMGVTEMVKKILDTFPVAIWDL--DPGEKNVLLLAIENRQTHVYNLLRSREEL 198
             TP+  AA     +++K      P + +D+   P  + V  LA+ ++    +  +  +  L
Sbjct:    89 TPLHCAAVSNSIKILKVFSHKTPSS-FDILTQPHNETVFHLAVRHKNLKAFKFMAQKVHL 147

Query:   199 GETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVKATTK---QAHRA 255
              E + ++ D  GN+ LH AA+ G      T G A     +     F     K   ++H+ 
Sbjct:   148 -EKLLYKPDKYGNTVLHTAASLGS-----TSGLAAVDLLDKDDANFPSIALKFGGESHKE 201

Query:   256 LVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGS----GKPILENKPVFNXX 311
                   E L     + +V+A  IA+V FA     PGG+ Q S    GK +      F   
Sbjct:   202 ESVMHSEALQNARNTITVVAILIASVTFAVGMNPPGGIYQESTSSKGKSVAAKTVAFKIF 261

Query:   312 XXXXXXXXXXXXXXXXXFLKILTFRYQENDFVMALPRELL-LGLTMLITSIVAI 364
                               + I+ F+ +    V+ +  +++ + +  L TS VA+
Sbjct:   262 YVSNSIALFTSLWIVILLVSIIPFKPKSLKNVLVITHKMMSVSVAALATSYVAV 315

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 0.00064, Sum P(2) = 0.00064
 Identities = 23/66 (34%), Positives = 32/66 (48%)

Query:   246 KATTKQAH---RALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPIL 302
             K T K  H   + L +  RE +   + S +V+A   ATVAFA    VPGG D   G  ++
Sbjct:   394 KRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGSAVV 452

Query:   303 ENKPVF 308
               +  F
Sbjct:   453 VGRASF 458

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	429
pfam13962	114	pfam13962, PGG, Domain of unknown function	5e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.002

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  101 bits (253), Expect = 5e-26
 Identities = 46/119 (38%), Positives = 61/119 (51%), Gaps = 13/119 (10%)

Query: 261 REWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGS-----GKPILENKPV-FNIFAIS 314
            EWL KT  S  V+A  IATV FA     PGG  Q       G PIL  KP  F  F +S
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 315 SLIALSSSVTVLIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHS 373
           + IA  +S+  +I+ L      Y    F   LPR LL  LT+L  S+++++V+F +G  
Sbjct: 61  NTIAFVASLVAVILLL------YIVPSFSRRLPR-LLALLTLLWLSLLSLMVAFAAGSY 112

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRS 194
           R     TP+ +AA  G  E+VK +L+     +   D   +  L LA +N    +  LL  
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 195 REELGETIFWQVDNLGNSALHLAATYGDH 223
           +   G  +  + D  GN+ LHLAA  G+ 
Sbjct: 62  K---GADVNAR-DKDGNTPLHLAARNGNL 86

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRS 194
           +     TP+ +AAK G  E+VK +L+     +   D      L LA  N    V  LL  
Sbjct: 36  KDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLK 94

Query: 195 REELGETIFWQVDNLGNSALHLAATYGD 222
                       D  G + LHLAA  G 
Sbjct: 95  HGADVNAR----DKDGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 143 ILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKN-VLLLAIENRQTHVYNLLRSREELGET 201
           + +AAK G  E+VK +L+       D++ G+ +  L LA  N    +  LL    E G  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA----DVNLGDTDTALHLAARNGNLEIVKLLL---EHGAD 53

Query: 202 IFWQVDNLGNSALHLAATYGD 222
           +    D  GN+ALHLAA  G+
Sbjct: 54  VN-AKDKDGNTALHLAARNGN 73

Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	429
PF13962	113	PGG: Domain of unknown function	99.92
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.85
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.84
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.82
PHA02791	284	ankyrin-like protein; Provisional	99.79
PHA02859	209	ankyrin repeat protein; Provisional	99.75
PHA02875	413	ankyrin repeat protein; Provisional	99.73
PHA03095	471	ankyrin-like protein; Provisional	99.73
KOG0510	929	consensus Ankyrin repeat protein [General function	99.72
PHA02946	446	ankyin-like protein; Provisional	99.72
PHA02878	477	ankyrin repeat protein; Provisional	99.71
PHA02874	434	ankyrin repeat protein; Provisional	99.71
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.7
PHA02791	284	ankyrin-like protein; Provisional	99.69
PHA02878	477	ankyrin repeat protein; Provisional	99.69
PHA03100	480	ankyrin repeat protein; Provisional	99.68
PHA03100	480	ankyrin repeat protein; Provisional	99.68
PHA02946	446	ankyin-like protein; Provisional	99.68
PHA03095	471	ankyrin-like protein; Provisional	99.68
PHA02989	494	ankyrin repeat protein; Provisional	99.68
PHA02875	413	ankyrin repeat protein; Provisional	99.68
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.68
PHA02874	434	ankyrin repeat protein; Provisional	99.67
KOG0508	615	consensus Ankyrin repeat protein [General function	99.67
PHA02798	489	ankyrin-like protein; Provisional	99.67
PHA02795	437	ankyrin-like protein; Provisional	99.65
PHA02876	682	ankyrin repeat protein; Provisional	99.63
KOG0510	929	consensus Ankyrin repeat protein [General function	99.62
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.61
PHA02741	169	hypothetical protein; Provisional	99.61
PHA02859	209	ankyrin repeat protein; Provisional	99.61
PHA02884	300	ankyrin repeat protein; Provisional	99.61
PHA02989	494	ankyrin repeat protein; Provisional	99.6
PHA02876	682	ankyrin repeat protein; Provisional	99.6
PHA02798	489	ankyrin-like protein; Provisional	99.59
PHA02743	166	Viral ankyrin protein; Provisional	99.59
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.59
PHA02736	154	Viral ankyrin protein; Provisional	99.58
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.57
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.54
PHA02917	661	ankyrin-like protein; Provisional	99.53
KOG0508	615	consensus Ankyrin repeat protein [General function	99.53
PHA02917	661	ankyrin-like protein; Provisional	99.52
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.5
PHA02741	169	hypothetical protein; Provisional	99.5
PHA02730	672	ankyrin-like protein; Provisional	99.5
PHA02795	437	ankyrin-like protein; Provisional	99.47
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.46
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.45
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.44
KOG0514	452	consensus Ankyrin repeat protein [General function	99.43
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.43
PHA02743	166	Viral ankyrin protein; Provisional	99.41
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.41
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.39
KOG0514	452	consensus Ankyrin repeat protein [General function	99.38
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.36
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.33
PHA02730	672	ankyrin-like protein; Provisional	99.32
PHA02736	154	Viral ankyrin protein; Provisional	99.32
PHA02792	631	ankyrin-like protein; Provisional	99.32
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.31
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.29
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.25
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.25
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.23
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.23
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.22
PHA02884	300	ankyrin repeat protein; Provisional	99.2
PHA02792	631	ankyrin-like protein; Provisional	99.2
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.19
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.18
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.18
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.16
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.12
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.11
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.09
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.07
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.06
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.01
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.96
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.91
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.9
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.87
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.64
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.58
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.56
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.36
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.35
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.33
PF13606	30	Ank_3: Ankyrin repeat	98.33
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.26
PF13606	30	Ank_3: Ankyrin repeat	98.25
KOG0522	560	consensus Ankyrin repeat protein [General function	98.24
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.18
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.17
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.1
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.06
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.04
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.87
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.85
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.8
KOG0522	560	consensus Ankyrin repeat protein [General function	97.72
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.57
KOG2384	223	consensus Major histocompatibility complex protein	97.53
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.44
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.27
KOG0511	516	consensus Ankyrin repeat protein [General function	96.82
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	96.77
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.61
KOG2384	223	consensus Major histocompatibility complex protein	96.44
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.15
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.12
KOG0511	516	consensus Ankyrin repeat protein [General function	95.42
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.34
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	95.04
KOG2505	591	consensus Ankyrin repeat protein [General function	94.89
KOG0521	785	consensus Putative GTPase activating proteins (GAP	94.59
KOG2505	591	consensus Ankyrin repeat protein [General function	93.37

>PF13962 PGG: Domain of unknown function

Probab=99.92  E-value=2e-25  Score=187.66  Aligned_cols=109  Identities=36%  Similarity=0.628  Sum_probs=96.8

Q ss_pred             hhhhhccCCcceehhhHHHhHhhhhcccCCCCccCC---CCcccccCCc-cchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042589          261 REWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQG---SGKPILENKP-VFNIFAISSLIALSSSVTVLIIFLKILTFR  336 (429)
Q Consensus       261 ~~~l~~~~~~~~vvA~Liatvtfaa~~~~PgG~~~~---~G~~~l~~~~-~f~~F~~~nt~a~~~S~~~~~~~l~~~~~~  336 (429)
                      +||+++++|++++||+||||+||||++|||||+|++   .|+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            478999999999999999999999999999999875   5999999877 999999999999999999999887422   


Q ss_pred             ccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042589          337 YQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSFL  375 (429)
Q Consensus       337 ~~~~~~~~~l~~~l~~~~~~l~~s~~~m~~af~~~~~~v  375 (429)
                         .++.+..++.+.++..++++++.+|++||++|+|+|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               344555566778889999999999999999999975

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.1e-21  Score=169.91  Aligned_cols=135  Identities=16%  Similarity=0.078  Sum_probs=101.8

Q ss_pred             HHHHHHHH-hCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           80 IQVFDELV-DDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        80 ~~iv~~Ll-~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      .+|+.+|+ +.+..+| .+|+.|+||+|.+++...+++  ++.|....  .-..|..++.|.||||+||.+|..||+++|
T Consensus        51 ~eiv~fLlsq~nv~~d-dkDdaGWtPlhia~s~g~~ev--Vk~Ll~r~--~advna~tn~G~T~LHyAagK~r~eIaqlL  125 (226)
T KOG4412|consen   51 VEIVYFLLSQPNVKPD-DKDDAGWTPLHIAASNGNDEV--VKELLNRS--GADVNATTNGGQTCLHYAAGKGRLEIAQLL  125 (226)
T ss_pred             hhHHHHHHhcCCCCCC-CccccCCchhhhhhhcCcHHH--HHHHhcCC--CCCcceecCCCcceehhhhcCChhhHHHHH
Confidence            58888888 5556666 567778888888877554443  33333221  222366677888888888888888888888


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHR  224 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~  224 (429)
                      ++++ ..+..+|.+|+||||-|+.-|+.+++++|+..++    .+|.+|++|+||||.|...||.+
T Consensus       126 le~g-a~i~~kD~~~qtplHRAAavGklkvie~Li~~~a----~~n~qDk~G~TpL~~al~e~~~d  186 (226)
T KOG4412|consen  126 LEKG-ALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGA----PLNTQDKYGFTPLHHALAEGHPD  186 (226)
T ss_pred             HhcC-CCCcccccccCchhHHHHhccchhhHHHHHhcCC----CCCcccccCccHHHHHHhccCch
Confidence            8775 5567888888888888888888888888888887    78888888888888886667655

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.7e-21  Score=170.36  Aligned_cols=152  Identities=20%  Similarity=0.196  Sum_probs=116.1

Q ss_pred             HHHHHhCCC-CCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHh
Q 042589           83 FDELVDDRN-PHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDT  161 (429)
Q Consensus        83 v~~Ll~~~a-~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~  161 (429)
                      +++|++... +.+..-|-+||||||.+++-++.++...  |...  ...+.|..|+.||||||+||..|+.|+|+.|+.+
T Consensus        19 veel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~f--Llsq--~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r   94 (226)
T KOG4412|consen   19 VEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYF--LLSQ--PNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNR   94 (226)
T ss_pred             HHHHHhcChhhhhccccccCCceeeeeeecCchhHHHH--HHhc--CCCCCCCccccCCchhhhhhhcCcHHHHHHHhcC
Confidence            345555444 5552233379999999998777665433  3221  1223355688999999999999999999999998


Q ss_pred             CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc---cccccccccc
Q 042589          162 FPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT---LGAALQMHWE  238 (429)
Q Consensus       162 ~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~---~~~al~~~~e  238 (429)
                      .....+..+..|+|+||+|+-.|+.+|+++|++.|+    .++.+|+.|.||||-||..|..+++.+   .|+.+..|..
T Consensus        95 ~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga----~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk  170 (226)
T KOG4412|consen   95 SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGA----LIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDK  170 (226)
T ss_pred             CCCCcceecCCCcceehhhhcCChhhHHHHHHhcCC----CCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccc
Confidence            433357889999999999999999999999999998    899999999999999999999988774   2455544444


Q ss_pred             hhHH
Q 042589          239 ISWF  242 (429)
Q Consensus       239 l~w~  242 (429)
                      ..|.
T Consensus       171 ~G~T  174 (226)
T KOG4412|consen  171 YGFT  174 (226)
T ss_pred             cCcc
Confidence            4443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.82  E-value=2.4e-20  Score=190.35  Aligned_cols=174  Identities=17%  Similarity=0.069  Sum_probs=132.7

Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHH--------HhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccc-cCCCC
Q 042589           33 SDYVKCFLKGIIDLVQEIELNVIWYA--------IYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYV-YNGRE  103 (429)
Q Consensus        33 ~~y~~c~~~g~~~~~~~~l~~~~~~~--------~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d-~~G~~  103 (429)
                      ..+.+|.. |.++.+++++...+...        ..++|..|++          .++++|+|+++|+++| ..+ .-|.|
T Consensus        47 ~~v~A~q~-G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNN----------rl~v~r~li~~gadvn-~~gG~l~st  114 (600)
T KOG0509|consen   47 DIVKATQY-GELETVKELVESEGESVNNPDREGVTLLHWAAINN----------RLDVARYLISHGADVN-AIGGVLGST  114 (600)
T ss_pred             hhhhHhhc-chHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcC----------cHHHHHHHHHcCCCcc-ccCCCCCCC
Confidence            33445555 99999966652212222        3466667766          7899999999999999 333 23999


Q ss_pred             cccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHc
Q 042589          104 PRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIEN  183 (429)
Q Consensus       104 P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~  183 (429)
                      |+|.|.-.++-.+. .-|++.++++.    ..|.+|.||||+||+.|++-+|-+||.++.+ ++.+|.+|+||||+|+.+
T Consensus       115 PLHWAar~G~~~vv-~lLlqhGAdpt----~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAayk  188 (600)
T KOG0509|consen  115 PLHWAARNGHISVV-DLLLQHGADPT----LKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYK  188 (600)
T ss_pred             cchHHHHcCcHHHH-HHHHHcCCCCc----eecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHh
Confidence            99988764443221 12445566554    4677899999999999999999999988744 688999999999999999


Q ss_pred             CCHHHHHHHHcCCCcccccccccc-CCCCcHHHHHHHcCCCccccc
Q 042589          184 RQTHVYNLLRSREELGETIFWQVD-NLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       184 g~~~iv~~Ll~~~~~~~~~in~~D-~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      |+...+..|++.++    .++..| ++|+||||||+..|+.+++.+
T Consensus       189 g~~~~v~~LL~f~a----~~~~~d~~~g~TpLHwa~~~gN~~~v~L  230 (600)
T KOG0509|consen  189 GFALFVRRLLKFGA----SLLLTDDNHGNTPLHWAVVGGNLTAVKL  230 (600)
T ss_pred             cccHHHHHHHHhcc----cccccccccCCchHHHHHhcCCcceEeh
Confidence            99888999999888    777777 999999999999999887763

>PHA02791 ankyrin-like protein; Provisional

Probab=99.79  E-value=3.6e-19  Score=172.91  Aligned_cols=176  Identities=13%  Similarity=0.016  Sum_probs=130.2

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchh----HHHHHHHHHhCCCCCCcccccCCCCcc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTW----AIQVFDELVDDRNPHVYKYVYNGREPR  105 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~----a~~iv~~Ll~~~a~~~~~~d~~G~~P~  105 (429)
                      ...|++.+|.. |+.+++..++ +.....        +...+..+.|..    ..+++++|+++|++++ ..|..|+||+
T Consensus        30 G~TpLh~Aa~~-g~~eiv~~Ll-~~ga~~--------n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn-~~d~~G~TpL   98 (284)
T PHA02791         30 GHSALYYAIAD-NNVRLVCTLL-NAGALK--------NLLENEFPLHQAATLEDTKIVKILLFSGMDDS-QFDDKGNTAL   98 (284)
T ss_pred             CCcHHHHHHHc-CCHHHHHHHH-HCcCCC--------cCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHH
Confidence            56789999987 8887773322 221111        100112333332    3699999999999999 4666799999


Q ss_pred             cccccCCccccccccCCCCCCCcccccccCCCCC-CcHHHHHHHcCcHHHHHHHHHhCCCccccCC-CCCCcHHHHHHHc
Q 042589          106 ISTFGQDVNAFTARETPPDPNTYKKKNARRSRRK-ETPILVAAKMGVTEMVKKILDTFPVAIWDLD-PGEKNVLLLAIEN  183 (429)
Q Consensus       106 ~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G-~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d-~~G~t~LH~A~~~  183 (429)
                      |.++..+..+  .++.|.+....   .+.++..| .||||+|+..|+.++|++|++++++..   | ..|+||||+|+.+
T Consensus        99 h~Aa~~g~~e--ivk~Ll~~gad---in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~---d~~~g~TpLh~Aa~~  170 (284)
T PHA02791         99 YYAVDSGNMQ--TVKLFVKKNWR---LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAILLSCIHITIKN  170 (284)
T ss_pred             HHHHHcCCHH--HHHHHHHCCCC---cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc---ccccCccHHHHHHHc
Confidence            9987655433  34444332221   14456667 499999999999999999999876542   3 3589999999999


Q ss_pred             CCHHHHHHHHcCCCccccccccccCCCCcH-HHHHHHcCCCccccc
Q 042589          184 RQTHVYNLLRSREELGETIFWQVDNLGNSA-LHLAATYGDHRPWHT  228 (429)
Q Consensus       184 g~~~iv~~Ll~~~~~~~~~in~~D~~G~Tp-LHlAa~~g~~~~~~~  228 (429)
                      |+.+++++|++.|+    ++|.+|..|.|| ||+|+..|+.+++++
T Consensus       171 g~~eiv~lLL~~gA----d~n~~d~~g~t~~L~~Aa~~~~~e~v~l  212 (284)
T PHA02791        171 GHVDMMILLLDYMT----STNTNNSLLFIPDIKLAIDNKDLEMLQA  212 (284)
T ss_pred             CCHHHHHHHHHCCC----CCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence            99999999999998    899999999987 999999999988874

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.75  E-value=6.9e-18  Score=157.29  Aligned_cols=178  Identities=9%  Similarity=-0.018  Sum_probs=127.4

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccc-cCCCCccccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYV-YNGREPRIST  108 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d-~~G~~P~~~~  108 (429)
                      .+.|++.++.. |+.+.++.++ +........|...+   +-.........+++++|+++|+++| ..+ ..|.||+|.+
T Consensus        21 ~~~pL~~A~~~-~~~~~vk~Li-~~~n~~~~~g~TpL---h~a~~~~~~~~eiv~~Ll~~gadvn-~~~~~~g~TpLh~a   94 (209)
T PHA02859         21 YCNPLFYYVEK-DDIEGVKKWI-KFVNDCNDLYETPI---FSCLEKDKVNVEILKFLIENGADVN-FKTRDNNLSALHHY   94 (209)
T ss_pred             cCcHHHHHHHh-CcHHHHHHHH-HhhhccCccCCCHH---HHHHHcCCCCHHHHHHHHHCCCCCC-ccCCCCCCCHHHHH
Confidence            46788888888 8888885554 22222222222222   2211111125799999999999999 333 3699999976


Q ss_pred             ccCC-ccccccccCCCCCCCcccccccCCCCCCcHHHHHHH--cCcHHHHHHHHHhCCCccccCCCCCCcHHHH-HHHcC
Q 042589          109 FGQD-VNAFTARETPPDPNTYKKKNARRSRRKETPILVAAK--MGVTEMVKKILDTFPVAIWDLDPGEKNVLLL-AIENR  184 (429)
Q Consensus       109 ~~~~-~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~--~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~-A~~~g  184 (429)
                      .... ....+.++++.+...   +.+.+|.+|.||||+|+.  .|+.+++++|++++.+ ++.+|..|.||||. |+..+
T Consensus        95 ~~~~~~~~~eiv~~Ll~~ga---din~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGS---SITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS-FLNKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHhCccccHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-cccccCCCCcHHHHHHHhcC
Confidence            4321 223344444443322   226678899999999876  4789999999988766 47789999999996 56788


Q ss_pred             CHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcC
Q 042589          185 QTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYG  221 (429)
Q Consensus       185 ~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g  221 (429)
                      +.+++++|++.|+    +++.+|..|.||||+|...+
T Consensus       171 ~~~iv~~Ll~~Ga----di~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        171 DKKIFDFLTSLGI----DINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CHHHHHHHHHcCC----CCCCCCCCCCCHHHHHhhhh
Confidence            9999999999998    89999999999999998764

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.73  E-value=6e-18  Score=173.25  Aligned_cols=139  Identities=14%  Similarity=0.016  Sum_probs=102.3

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      ..+++++|+++|++++ ..+.+|.||+|.++..+..+  .++.+.+.....  .+..+.+|.||||+|+..|+.++++.|
T Consensus        47 ~~~~v~~Ll~~ga~~~-~~~~~~~t~L~~A~~~g~~~--~v~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~~~~~iv~~L  121 (413)
T PHA02875         47 DSEAIKLLMKHGAIPD-VKYPDIESELHDAVEEGDVK--AVEELLDLGKFA--DDVFYKDGMTPLHLATILKKLDIMKLL  121 (413)
T ss_pred             CHHHHHHHHhCCCCcc-ccCCCcccHHHHHHHCCCHH--HHHHHHHcCCcc--cccccCCCCCHHHHHHHhCCHHHHHHH
Confidence            3678888888888887 23356888888776544322  233333221111  123455788899999888888888888


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++++.+ .+..|..|+||||+|+..|+.+++++|++.++    +++.+|..|+||||+|+..|+.++++
T Consensus       122 l~~gad-~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~----~~~~~d~~g~TpL~~A~~~g~~eiv~  185 (413)
T PHA02875        122 IARGAD-PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA----CLDIEDCCGCTPLIIAMAKGDIAICK  185 (413)
T ss_pred             HhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC----CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            888665 36678888889999988888888888888887    78888888889999988888877665

>PHA03095 ankyrin-like protein; Provisional

Probab=99.73  E-value=7.3e-18  Score=175.23  Aligned_cols=139  Identities=14%  Similarity=-0.024  Sum_probs=84.5

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcH--HHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVT--EMVKK  157 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~--eiv~~  157 (429)
                      .+++++|+++|++++. .|..|+||+|.+..........++.+.+..   .+.+.+|..|.||||+||..|+.  .+++.
T Consensus       167 ~~iv~~Ll~~g~~~~~-~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g---~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~  242 (471)
T PHA03095        167 VELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRARIVRELIRAG---CDPAATDMLGNTPLHSMATGSSCKRSLVLP  242 (471)
T ss_pred             HHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHHCCCcHHHHHHHHHcC---CCCcccCCCCCCHHHHHHhcCCchHHHHHH
Confidence            4455555555555552 233455555544322222222222222111   11245667777777777777764  46666


Q ss_pred             HHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          158 ILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       158 Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|+    ++|.+|.+|+||||+|+..|+.++++
T Consensus       243 ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~ga----d~n~~~~~g~tpl~~A~~~~~~~~v~  307 (471)
T PHA03095        243 LLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIALGA----DINAVSSDGNTPLSLMVRNNNGRAVR  307 (471)
T ss_pred             HHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCCCHHHHHHHhCCHHHHH
Confidence            7766544 46677778888888888888888888887777    77778888888888888877766554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.72  E-value=6.4e-18  Score=175.92  Aligned_cols=187  Identities=16%  Similarity=0.066  Sum_probs=107.8

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHh-----CCCCCCcccccCCCCc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVD-----DRNPHVYKYVYNGREP  104 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~-----~~a~~~~~~d~~G~~P  104 (429)
                      .+.|+..+|+. +..+ +.+.|.+..++.......+-..++.....  .+.|.++..+.     ++..+| -++++|.+|
T Consensus       154 ~~TpLh~A~~~-~~~E-~~k~Li~~~a~~~K~~~~~~~~iH~aa~s--~s~e~mEi~l~~~g~~r~~~in-~~~n~~~~p  228 (929)
T KOG0510|consen  154 GFTPLHLAARK-NKVE-AKKELINKGADPCKSDIDGNFPIHEAARS--GSKECMEIFLPEHGYERQTHIN-FDNNEKATP  228 (929)
T ss_pred             CCchhhHHHhc-ChHH-HHHHHHhcCCCCCcccCcCCchHHHHHHh--cchhhhhhhhccccchhhcccc-cccCCCCcc
Confidence            56799999999 6666 65555455544433333332222222111  13577777776     677777 344558888


Q ss_pred             ccccccCCccccccccCCCCC---CCc---------ccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCC
Q 042589          105 RISTFGQDVNAFTARETPPDP---NTY---------KKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPG  172 (429)
Q Consensus       105 ~~~~~~~~~~~~~~i~ll~~~---~~~---------~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~  172 (429)
                      +|.+...+.  ...++...+.   ...         +...+..|++|.||||+||+.|+.+.++.|+..+.+ ++.++.+
T Consensus       229 LhlAve~g~--~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d  305 (929)
T KOG0510|consen  229 LHLAVEGGD--IEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKD  305 (929)
T ss_pred             hhhhhhcCC--HHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCC
Confidence            887765222  1112111111   111         111255677788888888888888888877766544 4666666


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHc-CCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          173 EKNVLLLAIENRQTHVYNLLRS-REELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       173 G~t~LH~A~~~g~~~iv~~Ll~-~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +.||||.|+..|+.+.|+.|++ .+.   .++|+.|-.|+||||+|++.||.+++.
T Consensus       306 ~~spLH~AA~yg~~ntv~rLL~~~~~---rllne~D~~g~tpLHlaa~~gH~~v~q  358 (929)
T KOG0510|consen  306 EESPLHFAAIYGRINTVERLLQESDT---RLLNESDLHGMTPLHLAAKSGHDRVVQ  358 (929)
T ss_pred             CCCchHHHHHcccHHHHHHHHhCcCc---cccccccccCCCchhhhhhcCHHHHHH
Confidence            6666666666666666666666 332   255566666666666666666655444

>PHA02946 ankyin-like protein; Provisional

Probab=99.72  E-value=2.2e-17  Score=170.73  Aligned_cols=179  Identities=10%  Similarity=-0.079  Sum_probs=113.4

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTF  109 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~  109 (429)
                      ...|++.+|.. |+.+++ ++|++..+++.-....+...++-....+....++++.|+++|+++|...|.+|+||+|.+.
T Consensus        72 G~TpLh~Aa~~-g~~eiv-~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~  149 (446)
T PHA02946         72 GNYPLHIASKI-NNNRIV-AMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACT  149 (446)
T ss_pred             CCCHHHHHHHc-CCHHHH-HHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHH
Confidence            56688888777 666665 2222222222211122222222211222235678888888888888444667888887554


Q ss_pred             cCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCc--HHHHHHHHHhCCCccccCCCCCCcHHHHHHHcC--
Q 042589          110 GQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGV--TEMVKKILDTFPVAIWDLDPGEKNVLLLAIENR--  184 (429)
Q Consensus       110 ~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~--~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g--  184 (429)
                      .+..+   .++++. .+.+    .+..|..|+||||+|+..++  .++++.|++++.+ ++.+|.+|+||||+|+.++  
T Consensus       150 ~~~~~---vv~~Ll~~gad----~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad-in~~d~~G~TpLH~Aa~~~~~  221 (446)
T PHA02946        150 DPSER---VFKKIMSIGFE----ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS-PSKPDHDGNTPLHIVCSKTVK  221 (446)
T ss_pred             CCChH---HHHHHHhcccc----ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCC
Confidence            32222   222222 2221    24567788888888877544  6888888887655 4677888888888888875  


Q ss_pred             CHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCC
Q 042589          185 QTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDH  223 (429)
Q Consensus       185 ~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~  223 (429)
                      +.+++++|+. ++    ++|.+|.+|+||||+|+..++.
T Consensus       222 ~~~iv~lLl~-ga----din~~d~~G~TpLh~A~~~~~~  255 (446)
T PHA02946        222 NVDIINLLLP-ST----DVNKQNKFGDSPLTLLIKTLSP  255 (446)
T ss_pred             cHHHHHHHHc-CC----CCCCCCCCCCCHHHHHHHhCCh
Confidence            7788888874 55    7888888888888888888774

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.71  E-value=5e-17  Score=169.70  Aligned_cols=135  Identities=13%  Similarity=0.039  Sum_probs=106.9

Q ss_pred             HHHHHHHHhCCCCCCcccccC-CCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYN-GREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~-G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      .+++++|+++|+++| ..+.. |+||+|.++..+.  .+.+++|.+...   ..+.+|..|.||||.|++.|+.++++.|
T Consensus       147 ~~iv~~Ll~~gadin-~~~~~~g~tpLh~A~~~~~--~~iv~~Ll~~ga---d~n~~d~~g~tpLh~A~~~~~~~iv~~L  220 (477)
T PHA02878        147 AEITKLLLSYGADIN-MKDRHKGNTALHYATENKD--QRLTELLLSYGA---NVNIPDKTNNSPLHHAVKHYNKPIVHIL  220 (477)
T ss_pred             HHHHHHHHHcCCCCC-ccCCCCCCCHHHHHHhCCC--HHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            469999999999999 45666 9999999876443  333444433221   1256788999999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHc-CCHHHHHHHHcCCCccccccccccC-CCCcHHHHHHHcCCCcccc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIEN-RQTHVYNLLRSREELGETIFWQVDN-LGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~-g~~~iv~~Ll~~~~~~~~~in~~D~-~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++.+++ ++.+|..|+||||+|+.. ++.+++++|++.|+    ++|.+|. .|.||||+|+  ++.++++
T Consensus       221 l~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga----dvn~~~~~~g~TpLh~A~--~~~~~v~  284 (477)
T PHA02878        221 LENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLEHGV----DVNAKSYILGLTALHSSI--KSERKLK  284 (477)
T ss_pred             HHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC----CCCccCCCCCCCHHHHHc--cCHHHHH
Confidence            988766 578899999999999975 78999999999998    8888875 7999999993  4444443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.71  E-value=2.4e-17  Score=170.02  Aligned_cols=141  Identities=17%  Similarity=0.096  Sum_probs=105.9

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCC-CCCc-------------------ccccccCCCC
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPD-PNTY-------------------KKKNARRSRR  138 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~-~~~~-------------------~~~~~~~d~~  138 (429)
                      ..+++++|+++|+++| ..+..|.||+|.+...+..++  +++|.+ +.+.                   ..+.+.+|..
T Consensus        47 ~~~iv~~Ll~~Ga~~n-~~~~~~~t~L~~A~~~~~~~i--v~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~  123 (434)
T PHA02874         47 DAKIVELFIKHGADIN-HINTKIPHPLLTAIKIGAHDI--IKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAE  123 (434)
T ss_pred             CHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHH--HHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCC
Confidence            3578888888888888 344458888887765333221  222211 1110                   1123567788


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHH
Q 042589          139 KETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAA  218 (429)
Q Consensus       139 G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa  218 (429)
                      |.||||+|+..|+.++|+.|++++++ .+.+|..|+||||+|+.+|+.+++++|++.|+    +++.+|.+|+||||+|+
T Consensus       124 g~T~Lh~A~~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~----~~n~~~~~g~tpL~~A~  198 (434)
T PHA02874        124 LKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA----YANVKDNNGESPLHNAA  198 (434)
T ss_pred             CccHHHHHHHCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC----CCCCCCCCCCCHHHHHH
Confidence            99999999999999999999988766 46788899999999999999999999999887    78889999999999999


Q ss_pred             HcCCCcccc
Q 042589          219 TYGDHRPWH  227 (429)
Q Consensus       219 ~~g~~~~~~  227 (429)
                      ..|+.++++
T Consensus       199 ~~g~~~iv~  207 (434)
T PHA02874        199 EYGDYACIK  207 (434)
T ss_pred             HcCCHHHHH
Confidence            999877766

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.70  E-value=2.6e-17  Score=168.36  Aligned_cols=134  Identities=19%  Similarity=0.029  Sum_probs=111.8

Q ss_pred             HHHHHHHHHhC-CCCCCcccccCCCCcccccccCCcccccccc-CCCCCCCcccccccCC-CCCCcHHHHHHHcCcHHHH
Q 042589           79 AIQVFDELVDD-RNPHVYKYVYNGREPRISTFGQDVNAFTARE-TPPDPNTYKKKNARRS-RRKETPILVAAKMGVTEMV  155 (429)
Q Consensus        79 a~~iv~~Ll~~-~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~-ll~~~~~~~~~~~~~d-~~G~TpLh~Aa~~G~~eiv  155 (429)
                      .++-|+.|+|. |.+++ .-|++|.+++|.+.-++.-+  ..+ +++.+++.    |+.+ .-+.|||||||++|+..+|
T Consensus        56 ~l~~v~~lve~~g~~v~-~~D~~g~tlLHWAAiNNrl~--v~r~li~~gadv----n~~gG~l~stPLHWAar~G~~~vv  128 (600)
T KOG0509|consen   56 ELETVKELVESEGESVN-NPDREGVTLLHWAAINNRLD--VARYLISHGADV----NAIGGVLGSTPLHWAARNGHISVV  128 (600)
T ss_pred             hHHHHHHHHhhcCcCCC-CCCcCCccceeHHHHcCcHH--HHHHHHHcCCCc----cccCCCCCCCcchHHHHcCcHHHH
Confidence            46778999998 99888 46667999999886644332  232 33444443    2333 6789999999999999999


Q ss_pred             HHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCc
Q 042589          156 KKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHR  224 (429)
Q Consensus       156 ~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~  224 (429)
                      +.|++++++. ..+|.+|.|+||+|++.||.-.|-||+.+++    ++|.+|.+|+||||+||++|+..
T Consensus       129 ~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~----d~d~~D~~grTpLmwAaykg~~~  192 (600)
T KOG0509|consen  129 DLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGA----DIDLRDNNGRTPLMWAAYKGFAL  192 (600)
T ss_pred             HHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhcc----cCCCcCCCCCCHHHHHHHhcccH
Confidence            9999998774 7899999999999999999999999999997    99999999999999999999966

>PHA02791 ankyrin-like protein; Provisional

Probab=99.69  E-value=4.4e-17  Score=158.36  Aligned_cols=84  Identities=18%  Similarity=0.123  Sum_probs=43.3

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCC-cHHHHH
Q 042589          139 KETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGN-SALHLA  217 (429)
Q Consensus       139 G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~-TpLHlA  217 (429)
                      |+||||+|+..|+.++++.|++.+.+ .+.+|..|+||||+|+.+|+.+++++|++.++    +++.+|+.|. ||||+|
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~ga----din~~~~~g~~TpL~~A  135 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW----RLMFYGKTGWKTSFYHA  135 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CcCccCCCCCcHHHHHH
Confidence            45555555555555555555544333 24445555555555555555555555555554    4455555442 555555


Q ss_pred             HHcCCCcccc
Q 042589          218 ATYGDHRPWH  227 (429)
Q Consensus       218 a~~g~~~~~~  227 (429)
                      +..|+.++++
T Consensus       136 a~~g~~eivk  145 (284)
T PHA02791        136 VMLNDVSIVS  145 (284)
T ss_pred             HHcCCHHHHH
Confidence            5555544443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.69  E-value=4.6e-17  Score=170.03  Aligned_cols=90  Identities=17%  Similarity=0.158  Sum_probs=81.1

Q ss_pred             ccCCCC-CCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCC
Q 042589          133 ARRSRR-KETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGN  211 (429)
Q Consensus       133 ~~~d~~-G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~  211 (429)
                      +..+.. |+||||+||..|+.++++.|++++++ ++..|..|+||||+|+..|+.+++++|++.|+    ++|.+|.+|+
T Consensus       161 n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga----~in~~d~~g~  235 (477)
T PHA02878        161 NMKDRHKGNTALHYATENKDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLENGA----STDARDKCGN  235 (477)
T ss_pred             CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCC----CCCCCCCCCC
Confidence            556667 99999999999999999999998766 47789999999999999999999999999998    8999999999


Q ss_pred             cHHHHHHHc-CCCcccc
Q 042589          212 SALHLAATY-GDHRPWH  227 (429)
Q Consensus       212 TpLHlAa~~-g~~~~~~  227 (429)
                      ||||+|+.. ++.++++
T Consensus       236 TpLh~A~~~~~~~~iv~  252 (477)
T PHA02878        236 TPLHISVGYCKDYDILK  252 (477)
T ss_pred             CHHHHHHHhcCCHHHHH
Confidence            999999976 5666655

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.68  E-value=7.5e-17  Score=168.14  Aligned_cols=140  Identities=17%  Similarity=0.085  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      ..+++++|+++|++++ ..+..|.||+|.+...+....+.++.+.+...   +.+.+|..|.||||+|+..|+.++++.|
T Consensus       120 ~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~---din~~d~~g~tpL~~A~~~~~~~iv~~L  195 (480)
T PHA03100        120 SYSIVEYLLDNGANVN-IKNSDGENLLHLYLESNKIDLKILKLLIDKGV---DINAKNRYGYTPLHIAVEKGNIDVIKFL  195 (480)
T ss_pred             hHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCChHHHHHHHHHCCC---CcccccCCCCCHHHHHHHhCCHHHHHHH
Confidence            4555556666665555 23334566665554433112222332222111   0133344555555555555555555555


Q ss_pred             HHhCCCccccCCCCC------CcHHHHHHHcCC--HHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          159 LDTFPVAIWDLDPGE------KNVLLLAIENRQ--THVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       159 l~~~~~~~~~~d~~G------~t~LH~A~~~g~--~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++++.+. +..+..|      .||||.|+..|+  .+++++|++.|+    ++|.+|.+|.||||+|+..|+.++++
T Consensus       196 l~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~----din~~d~~g~TpL~~A~~~~~~~iv~  267 (480)
T PHA03100        196 LDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV----PINIKDVYGFTPLHYAVYNNNPEFVK  267 (480)
T ss_pred             HHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            5554332 3344444      555555555555  555555555554    45555555555555555555544443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.68  E-value=8.9e-17  Score=167.57  Aligned_cols=187  Identities=15%  Similarity=0.058  Sum_probs=125.1

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhc---CchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYA---GIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRI  106 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~---g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~  106 (429)
                      ..+|+|.++.. |..+.++.++ +........   |...+..+...+.......++++.|+++|++++ ..|..|.||+|
T Consensus        35 ~~t~L~~A~~~-~~~~ivk~Ll-~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~-~~d~~g~tpL~  111 (480)
T PHA03100         35 PVLPLYLAKEA-RNIDVVKILL-DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN-APDNNGITPLL  111 (480)
T ss_pred             cchhhhhhhcc-CCHHHHHHHH-HcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCC-CCCCCCCchhh
Confidence            56688887777 7777665554 444443222   222221111111122236788888888888887 45556888888


Q ss_pred             ccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcC--cHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcC
Q 042589          107 STFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMG--VTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENR  184 (429)
Q Consensus       107 ~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G--~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g  184 (429)
                      .+........+.++.+.+...   ..+..+..|.||||+|+..|  +.++++.|++++++ ++.+|..|.||||+|+..|
T Consensus       112 ~A~~~~~~~~~iv~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~~  187 (480)
T PHA03100        112 YAISKKSNSYSIVEYLLDNGA---NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD-INAKNRYGYTPLHIAVEKG  187 (480)
T ss_pred             HHHhcccChHHHHHHHHHcCC---CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC-cccccCCCCCHHHHHHHhC
Confidence            887212222333444433221   12456678888888888888  88888888888766 4667788888888888888


Q ss_pred             CHHHHHHHHcCCCccccccccccCCC------CcHHHHHHHcCC--Ccccc
Q 042589          185 QTHVYNLLRSREELGETIFWQVDNLG------NSALHLAATYGD--HRPWH  227 (429)
Q Consensus       185 ~~~iv~~Ll~~~~~~~~~in~~D~~G------~TpLHlAa~~g~--~~~~~  227 (429)
                      +.+++++|++.|+    +++..|..|      .||||.|+..|+  .++++
T Consensus       188 ~~~iv~~Ll~~ga----~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~  234 (480)
T PHA03100        188 NIDVIKFLLDNGA----DINAGDIETLLFTIFETPLHIAACYNEITLEVVN  234 (480)
T ss_pred             CHHHHHHHHHcCC----CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHH
Confidence            8888888888887    788888888      888888888888  66554

>PHA02946 ankyin-like protein; Provisional

Probab=99.68  E-value=6.8e-17  Score=167.09  Aligned_cols=134  Identities=14%  Similarity=0.039  Sum_probs=105.0

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .++++.|+++|+++| ..|..|+||+|.+...+....+.+++|.+.....  +...|.+|.|||| ||..|+.++++.|+
T Consensus        85 ~eiv~lLL~~GAdin-~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadi--n~~~d~~g~tpL~-aa~~~~~~vv~~Ll  160 (446)
T PHA02946         85 NRIVAMLLTHGADPN-ACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKI--NNSVDEEGCGPLL-ACTDPSERVFKKIM  160 (446)
T ss_pred             HHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCc--ccccCCCCCcHHH-HHHCCChHHHHHHH
Confidence            689999999999999 4677799999987654444444454444332211  1235778999997 77789999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcC--CHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCC
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENR--QTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGD  222 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g--~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  222 (429)
                      +.+.+ ++..|..|+||||+|+..+  +.+++++|++.|+    ++|.+|.+|+||||+|+..|.
T Consensus       161 ~~gad-~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Ga----din~~d~~G~TpLH~Aa~~~~  220 (446)
T PHA02946        161 SIGFE-ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGI----SPSKPDHDGNTPLHIVCSKTV  220 (446)
T ss_pred             hcccc-ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCC----CCcccCCCCCCHHHHHHHcCC
Confidence            87655 4778999999999998754  4689999999998    899999999999999999873

>PHA03095 ankyrin-like protein; Provisional

Probab=99.68  E-value=8.7e-17  Score=167.16  Aligned_cols=87  Identities=13%  Similarity=0.038  Sum_probs=47.7

Q ss_pred             CCCCCcHHHHHHHc--CcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCH--HHHHHHHcCCCccccccccccCCCC
Q 042589          136 SRRKETPILVAAKM--GVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQT--HVYNLLRSREELGETIFWQVDNLGN  211 (429)
Q Consensus       136 d~~G~TpLh~Aa~~--G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~--~iv~~Ll~~~~~~~~~in~~D~~G~  211 (429)
                      |..|.||||+|+..  ++.++++.|++.+.+ .+.+|..|+||||+|+..|+.  .+++.|++.+.    ++|.+|.+|+
T Consensus       184 d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~----din~~d~~g~  258 (471)
T PHA03095        184 DDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI----SINARNRYGQ  258 (471)
T ss_pred             CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCC----CCCCcCCCCC
Confidence            44555555555543  445555555555433 244555566666666655543  34555555555    5666666666


Q ss_pred             cHHHHHHHcCCCcccc
Q 042589          212 SALHLAATYGDHRPWH  227 (429)
Q Consensus       212 TpLHlAa~~g~~~~~~  227 (429)
                      ||||+|+..|+.++++
T Consensus       259 TpLh~A~~~~~~~~v~  274 (471)
T PHA03095        259 TPLHYAAVFNNPRACR  274 (471)
T ss_pred             CHHHHHHHcCCHHHHH
Confidence            6666666666555443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.68  E-value=4.9e-17  Score=170.54  Aligned_cols=141  Identities=13%  Similarity=0.017  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhCCCCC-CcccccCCCCcccccccCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcC----cH
Q 042589           79 AIQVFDELVDDRNPH-VYKYVYNGREPRISTFGQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMG----VT  152 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~-~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G----~~  152 (429)
                      ..+++++|+++|+++ + ..|..|+||+|.+........+.+++|. .+.+...   ..+..|.||||+|++.+    +.
T Consensus       123 ~~eiv~~Ll~~Gadin~-~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~---~~~~~g~tpL~~a~~~~~~~~~~  198 (494)
T PHA02989        123 NCDMLRFLLSKGINVND-VKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFE---KTSLYGLTPMNIYLRNDIDVISI  198 (494)
T ss_pred             cHHHHHHHHHCCCCccc-ccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc---cccccCCChHHHHHhcccccccH
Confidence            467888888888888 4 3455688888866433322333444443 3332211   13567888888887654    78


Q ss_pred             HHHHHHHHhCCCc-------------------------------------cccCCCCCCcHHHHHHHcCCHHHHHHHHcC
Q 042589          153 EMVKKILDTFPVA-------------------------------------IWDLDPGEKNVLLLAIENRQTHVYNLLRSR  195 (429)
Q Consensus       153 eiv~~Ll~~~~~~-------------------------------------~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~  195 (429)
                      +++++|++++.+.                                     ++.+|..|+||||+|+..|+.+++++|++.
T Consensus       199 ~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~  278 (494)
T PHA02989        199 KVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKL  278 (494)
T ss_pred             HHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc
Confidence            8888888775431                                     234566788999999888888999998888


Q ss_pred             CCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          196 EELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       196 ~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |+    ++|.+|.+|+||||+|+..|+.++++
T Consensus       279 Ga----din~~d~~G~TpL~~A~~~~~~~iv~  306 (494)
T PHA02989        279 GD----DIYNVSKDGDTVLTYAIKHGNIDMLN  306 (494)
T ss_pred             CC----CccccCCCCCCHHHHHHHcCCHHHHH
Confidence            88    88888888999999998888877664

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.68  E-value=8.9e-17  Score=164.59  Aligned_cols=139  Identities=19%  Similarity=0.066  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      ..+++++|+++|+++| ..+.+|.||+|.+...+.  .+.++.|.+....   .+..+.++.||||.|+..|+.++++.|
T Consensus        14 ~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~~~--~~~v~~Ll~~ga~---~~~~~~~~~t~L~~A~~~g~~~~v~~L   87 (413)
T PHA02875         14 ELDIARRLLDIGINPN-FEIYDGISPIKLAMKFRD--SEAIKLLMKHGAI---PDVKYPDIESELHDAVEEGDVKAVEEL   87 (413)
T ss_pred             CHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCC--HHHHHHHHhCCCC---ccccCCCcccHHHHHHHCCCHHHHHHH
Confidence            4578899999999999 234479999998875433  3344444433221   134456799999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++.++...+..+.+|+||||+|+..|+.+++++|++.|+    +++.+|.+|.||||+|+..|+.++++
T Consensus        88 l~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga----d~~~~~~~g~tpLh~A~~~~~~~~v~  152 (413)
T PHA02875         88 LDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGA----DPDIPNTDKFSPLHLAVMMGDIKGIE  152 (413)
T ss_pred             HHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCC----CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            998876656667889999999999999999999999998    89999999999999999999988766

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.68  E-value=1.2e-16  Score=171.88  Aligned_cols=142  Identities=13%  Similarity=-0.003  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHhCC-CCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCc--HHH
Q 042589           78 WAIQVFDELVDDR-NPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGV--TEM  154 (429)
Q Consensus        78 ~a~~iv~~Ll~~~-a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~--~ei  154 (429)
                      ..++++++|+++| +++|...+..|+||+|.+.+......+.++.|.+...   +.+.+|.+|.||||+|++.|+  .++
T Consensus       153 v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GA---DVN~kD~~G~TPLH~Aa~~g~~~~eI  229 (764)
T PHA02716        153 IDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGV---NVNLQNNHLITPLHTYLITGNVCASV  229 (764)
T ss_pred             CCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHHcCCCCHHH
Confidence            3457888888888 8888222556888888765433333344444433221   225567778888888888885  478


Q ss_pred             HHHHHHhCCCccccCCCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHcCCC
Q 042589          155 VKKILDTFPVAIWDLDPGEKNVLLLA-------------------------------------IENRQTHVYNLLRSREE  197 (429)
Q Consensus       155 v~~Ll~~~~~~~~~~d~~G~t~LH~A-------------------------------------~~~g~~~iv~~Ll~~~~  197 (429)
                      |+.|++++.+ ++.+|..|+||||.|                                     +.+|+.+++++|++.|+
T Consensus       230 VklLLe~GAD-VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GA  308 (764)
T PHA02716        230 IKKIIELGGD-MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV  308 (764)
T ss_pred             HHHHHHcCCC-CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCC
Confidence            8888877665 467788888888864                                     34466777777887777


Q ss_pred             ccccccccccCCCCcHHHHHHHc--CCCcccc
Q 042589          198 LGETIFWQVDNLGNSALHLAATY--GDHRPWH  227 (429)
Q Consensus       198 ~~~~~in~~D~~G~TpLHlAa~~--g~~~~~~  227 (429)
                          ++|.+|.+|+||||+|+..  ++.++++
T Consensus       309 ----dIN~kD~~G~TPLH~Aaa~~~~~~eIVk  336 (764)
T PHA02716        309 ----KLHYKDSAGRTCLHQYILRHNISTDIIK  336 (764)
T ss_pred             ----ceeccCCCCCCHHHHHHHHhCCCchHHH
Confidence                7788888888888877643  4555554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.67  E-value=1.6e-16  Score=163.95  Aligned_cols=131  Identities=13%  Similarity=-0.022  Sum_probs=105.7

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCC-CCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPD-PNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~-~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      .++++.|+++|++++ ..+..|.||+|.++..+..  +.++.|.+ +.+    .+.+|.+|.||||+|+..|+.++++.|
T Consensus       104 ~~~i~~ll~~g~d~n-~~~~~g~T~Lh~A~~~~~~--~~v~~Ll~~gad----~n~~d~~g~tpLh~A~~~~~~~iv~~L  176 (434)
T PHA02874        104 KDMIKTILDCGIDVN-IKDAELKTFLHYAIKKGDL--ESIKMLFEYGAD----VNIEDDNGCYPIHIAIKHNFFDIIKLL  176 (434)
T ss_pred             HHHHHHHHHCcCCCC-CCCCCCccHHHHHHHCCCH--HHHHHHHhCCCC----CCCcCCCCCCHHHHHHHCCcHHHHHHH
Confidence            467777788888888 3455699999988764432  33433333 322    255778999999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCC
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGD  222 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  222 (429)
                      ++++.+ .+..|..|+||||+|+..|+.+++++|++.++    +++.+|.+|.||||.|+..++
T Consensus       177 l~~g~~-~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~----~i~~~~~~g~TpL~~A~~~~~  235 (434)
T PHA02874        177 LEKGAY-ANVKDNNGESPLHNAAEYGDYACIKLLIDHGN----HIMNKCKNGFTPLHNAIIHNR  235 (434)
T ss_pred             HHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCcCCCCCCCCHHHHHHHCCh
Confidence            988765 46778999999999999999999999999998    788999999999999998765

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.67  E-value=4.4e-17  Score=160.75  Aligned_cols=183  Identities=14%  Similarity=0.035  Sum_probs=135.4

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHH--------HhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCC
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYA--------IYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNG  101 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~--------~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G  101 (429)
                      +-+|+..+|.+ |..+++..++.+-..+.        +|--+.+-..+|....  .-.++|||.|+++|++|| ..-.+.
T Consensus        42 g~tPL~iaaRn-GH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsa--AGHl~vVk~L~~~ga~VN-~tT~TN  117 (615)
T KOG0508|consen   42 GGTPLLIAARN-GHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASA--AGHLEVVKLLLRRGASVN-DTTRTN  117 (615)
T ss_pred             CCCceeeehhc-CcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhc--cCcHHHHHHHHHhcCccc-cccccC
Confidence            34688899988 99998844432222222        1111222222222111  123799999999999999 222236


Q ss_pred             CCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHH
Q 042589          102 REPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAI  181 (429)
Q Consensus       102 ~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~  181 (429)
                      .||+-.++..++-++.-+ ++|++.+.+    ..|+.|.|+||+||.+||++|+++|++.+.+. +.++.+|.|+||.++
T Consensus       118 StPLraACfDG~leivKy-LvE~gad~~----IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~ca  191 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKY-LVEHGADPE----IANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCA  191 (615)
T ss_pred             CccHHHHHhcchhHHHHH-HHHcCCCCc----ccccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhh
Confidence            699998887666555433 446666654    47889999999999999999999999998775 788999999999999


Q ss_pred             HcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          182 ENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       182 ~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +.|+.+++++|+++++    .+ .+|..|.|||..|+..|+.+++.
T Consensus       192 EsG~vdivq~Ll~~ga----~i-~~d~~GmtPL~~Aa~tG~~~iVe  232 (615)
T KOG0508|consen  192 ESGSVDIVQLLLKHGA----KI-DVDGHGMTPLLLAAVTGHTDIVE  232 (615)
T ss_pred             hcccHHHHHHHHhCCc----ee-eecCCCCchHHHHhhhcchHHHH
Confidence            9999999999999987    33 57888999999999999987765

>PHA02798 ankyrin-like protein; Provisional

Probab=99.67  E-value=2.5e-16  Score=165.03  Aligned_cols=51  Identities=18%  Similarity=0.174  Sum_probs=25.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCc
Q 042589          170 DPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHR  224 (429)
Q Consensus       170 d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~  224 (429)
                      |..|+||||+|+.+|+.+++++|++.|+    ++|.+|.+|+||||+|+..|+.+
T Consensus       255 d~~G~TPL~~A~~~~~~~~v~~LL~~GA----din~~d~~G~TpL~~A~~~~~~~  305 (489)
T PHA02798        255 DELGFNPLYYSVSHNNRKIFEYLLQLGG----DINIITELGNTCLFTAFENESKF  305 (489)
T ss_pred             CcCCccHHHHHHHcCcHHHHHHHHHcCC----cccccCCCCCcHHHHHHHcCcHH
Confidence            3444555555555555555555555444    44555555555555555444433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.65  E-value=3.9e-16  Score=158.16  Aligned_cols=135  Identities=16%  Similarity=0.082  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCccccc---ccCCCCCCcHHHHHHHcCcHHH
Q 042589           78 WAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKN---ARRSRRKETPILVAAKMGVTEM  154 (429)
Q Consensus        78 ~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~---~~~d~~G~TpLh~Aa~~G~~ei  154 (429)
                      ..++++++|+++||+++  . .++.||+|.+......++  ++.+..........   +..+..|.||+|.|+..|+.|+
T Consensus       129 n~~eiV~~LI~~GADIn--~-~~~~t~lh~A~~~~~~eI--Vk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eI  203 (437)
T PHA02795        129 VEIDIVDFMVDHGAVIY--K-IECLNAYFRGICKKESSV--VEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEI  203 (437)
T ss_pred             CCHHHHHHHHHCCCCCC--C-CCCCCHHHHHHHcCcHHH--HHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHH
Confidence            46899999999999998  4 457999998875433332  34444333211111   1112358899999999999999


Q ss_pred             HHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCC
Q 042589          155 VKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGD  222 (429)
Q Consensus       155 v~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  222 (429)
                      ++.|++++++ ++.+|..|+||||+|+.+|+.+++++|++.|+    ++|.+|.+|.||||+|+..|+
T Consensus       204 ve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA----dIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        204 YKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENGA----NVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHcCC
Confidence            9999998766 58899999999999999999999999999998    999999999999999999995

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.63  E-value=8.1e-16  Score=167.47  Aligned_cols=137  Identities=15%  Similarity=-0.032  Sum_probs=103.5

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCcccccccc-CCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARE-TPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~-ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      .++++.|++.|++++ ..|..|+||+|.+...+... ..++ +++.+.+    .+.+|..|.||||+|+..|+.++++.|
T Consensus       321 ~~~v~~Ll~~gadin-~~d~~g~TpLh~A~~~~~~~-~iv~lLl~~gad----in~~d~~G~TpLh~Aa~~~~~~iv~~L  394 (682)
T PHA02876        321 TENIRTLIMLGADVN-AADRLYITPLHQASTLDRNK-DIVITLLELGAN----VNARDYCDKTPIHYAAVRNNVVIINTL  394 (682)
T ss_pred             HHHHHHHHHcCCCCC-CcccCCCcHHHHHHHhCCcH-HHHHHHHHcCCC----CccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            578889999999998 45666999999876422111 1122 2222222    256788899999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCC-HHHHHHHHcCCCccccccccccCCCCcHHHHHHHcC-CCcccc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQ-THVYNLLRSREELGETIFWQVDNLGNSALHLAATYG-DHRPWH  227 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~-~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g-~~~~~~  227 (429)
                      ++.+++ .+..+..|.||||+|+..++ ..++++|++.|+    ++|.+|.+|+||||+|+..| +.++++
T Consensus       395 l~~gad-~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~ga----din~~d~~G~TpLh~Aa~~~~~~~iv~  460 (682)
T PHA02876        395 LDYGAD-IEALSQKIGTALHFALCGTNPYMSVKTLIDRGA----NVNSKNKDLSTPLHYACKKNCKLDVIE  460 (682)
T ss_pred             HHCCCC-ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCC----CCCcCCCCCChHHHHHHHhCCcHHHHH
Confidence            988766 46678889999999987665 467889999888    89999999999999999876 445544

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.62  E-value=7.8e-16  Score=160.56  Aligned_cols=122  Identities=24%  Similarity=0.269  Sum_probs=97.4

Q ss_pred             cccCCCCcccccccCC-ccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHH-hCCCccccCCCCCC
Q 042589           97 YVYNGREPRISTFGQD-VNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILD-TFPVAIWDLDPGEK  174 (429)
Q Consensus        97 ~d~~G~~P~~~~~~~~-~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~-~~~~~~~~~d~~G~  174 (429)
                      .|++|+||+|.++..+ ...++++  +..+.+    .+.+++++.||||.||++|+.+.|+.||+ .+-...+..|..|+
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~L--l~~Ga~----I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~  342 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNL--LGFGAS----INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGM  342 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHH--HHcCCc----ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCC
Confidence            6788999999887633 3334333  122221    14566899999999999999999999998 44445666788999


Q ss_pred             cHHHHHHHcCCHHHHHHHHcCCCccccccc--cccCCCCcHHHHHHHcCCCcccc
Q 042589          175 NVLLLAIENRQTHVYNLLRSREELGETIFW--QVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       175 t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in--~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ||||+|+.+||..+++.|+.+|+.   ..+  ..|.+|+||||+|+..|+..+++
T Consensus       343 tpLHlaa~~gH~~v~qlLl~~GA~---~~~~~e~D~dg~TaLH~Aa~~g~~~av~  394 (929)
T KOG0510|consen  343 TPLHLAAKSGHDRVVQLLLNKGAL---FLNMSEADSDGNTALHLAAKYGNTSAVQ  394 (929)
T ss_pred             CchhhhhhcCHHHHHHHHHhcChh---hhcccccccCCchhhhHHHHhccHHHHH
Confidence            999999999999999999999984   333  56999999999999999988776

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.61  E-value=1e-15  Score=164.78  Aligned_cols=130  Identities=16%  Similarity=0.076  Sum_probs=105.1

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCC-CCCCcccccccCCCCCCcHHHHH------------
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVA------------  146 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~A------------  146 (429)
                      .+++++|+++|+++| ..|..|.||||.+...+....+.+++|. .+.+.    +.+|..|+||||.|            
T Consensus       192 ~eIVklLLe~GADVN-~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV----N~kD~~G~TPLh~Ai~~a~n~~~EIv  266 (764)
T PHA02716        192 IDILEWLCNNGVNVN-LQNNHLITPLHTYLITGNVCASVIKKIIELGGDM----DMKCVNGMSPIMTYIINIDNINPEIT  266 (764)
T ss_pred             HHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC----CCCCCCCCCHHHHHHHhhhccCHHHH
Confidence            589999999999999 3556799999999765543334454443 34332    55788999999965            


Q ss_pred             -------------------------HHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHH--cCCHHHHHHHHcCCCcc
Q 042589          147 -------------------------AKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIE--NRQTHVYNLLRSREELG  199 (429)
Q Consensus       147 -------------------------a~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~--~g~~~iv~~Ll~~~~~~  199 (429)
                                               |+.|+.++++.|++++++ ++.+|..|+||||+|+.  +++.+++++|++.|+  
T Consensus       267 kiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GA--  343 (764)
T PHA02716        267 NIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGN--  343 (764)
T ss_pred             HHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCC--
Confidence                                     456888999999988766 57889999999999864  568999999999998  


Q ss_pred             ccccccccCCCCcHHHHHHH
Q 042589          200 ETIFWQVDNLGNSALHLAAT  219 (429)
Q Consensus       200 ~~~in~~D~~G~TpLHlAa~  219 (429)
                        ++|.+|..|+||||+|+.
T Consensus       344 --DIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        344 --DLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             --CCccCCCCCCCHHHHHHH
Confidence              899999999999999875

>PHA02741 hypothetical protein; Provisional

Probab=99.61  E-value=1.2e-15  Score=137.35  Aligned_cols=124  Identities=12%  Similarity=0.001  Sum_probs=94.9

Q ss_pred             cccCCCCcccccccCCccccccccCCC---CCCCcccccccCCCCCCcHHHHHHHcCc----HHHHHHHHHhCCCccccC
Q 042589           97 YVYNGREPRISTFGQDVNAFTARETPP---DPNTYKKKNARRSRRKETPILVAAKMGV----TEMVKKILDTFPVAIWDL  169 (429)
Q Consensus        97 ~d~~G~~P~~~~~~~~~~~~~~i~ll~---~~~~~~~~~~~~d~~G~TpLh~Aa~~G~----~eiv~~Ll~~~~~~~~~~  169 (429)
                      .++.|+||+|.+...+..++  ++.+.   .........+.+|..|.||||+|+..|+    .++++.|++.+++ ++.+
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~--v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in~~   93 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDI--IARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-INAQ   93 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHH--HHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCC
Confidence            45669999998876444332  22221   1111112236778899999999999999    5889999988766 4666


Q ss_pred             CC-CCCcHHHHHHHcCCHHHHHHHHcC-CCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          170 DP-GEKNVLLLAIENRQTHVYNLLRSR-EELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       170 d~-~G~t~LH~A~~~g~~~iv~~Ll~~-~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |. +|+||||+|+.+++.+++++|+.. +.    +++.+|.+|.||||+|+..|+.++++
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~----~~~~~n~~g~tpL~~A~~~~~~~iv~  149 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGI----DLHFCNADNKSPFELAIDNEDVAMMQ  149 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CCCcCCCCCCCHHHHHHHCCCHHHHH
Confidence            75 899999999999999999999974 66    88999999999999999999865543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.61  E-value=1.4e-15  Score=141.67  Aligned_cols=137  Identities=15%  Similarity=0.070  Sum_probs=104.0

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCC-CCCCcHHHHHHHc---CcHHH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRS-RRKETPILVAAKM---GVTEM  154 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d-~~G~TpLh~Aa~~---G~~ei  154 (429)
                      .+++|+.|++.+   + ..++.|.||+|.+...+....+.+++|.+....   .+.++ ..|.||||+|+..   |+.++
T Consensus        33 ~~~~vk~Li~~~---n-~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad---vn~~~~~~g~TpLh~a~~~~~~~~~ei  105 (209)
T PHA02859         33 DIEGVKKWIKFV---N-DCNDLYETPIFSCLEKDKVNVEILKFLIENGAD---VNFKTRDNNLSALHHYLSFNKNVEPEI  105 (209)
T ss_pred             cHHHHHHHHHhh---h-ccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC---CCccCCCCCCCHHHHHHHhCccccHHH
Confidence            567888998864   3 245679999998865443344555555433221   14444 4799999998864   57999


Q ss_pred             HHHHHHhCCCccccCCCCCCcHHHHHHH--cCCHHHHHHHHcCCCccccccccccCCCCcHHHH-HHHcCCCcccc
Q 042589          155 VKKILDTFPVAIWDLDPGEKNVLLLAIE--NRQTHVYNLLRSREELGETIFWQVDNLGNSALHL-AATYGDHRPWH  227 (429)
Q Consensus       155 v~~Ll~~~~~~~~~~d~~G~t~LH~A~~--~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHl-Aa~~g~~~~~~  227 (429)
                      ++.|++++.+ ++.+|.+|+||||+|+.  .++.+++++|++.|+    +++.+|.+|+||||. |+..++.++++
T Consensus       106 v~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga----din~~d~~g~t~Lh~~a~~~~~~~iv~  176 (209)
T PHA02859        106 LKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV----SFLNKDFDNNNILYSYILFHSDKKIFD  176 (209)
T ss_pred             HHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC----CcccccCCCCcHHHHHHHhcCCHHHHH
Confidence            9999988666 57899999999999986  468999999999998    899999999999996 45567766655

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.61  E-value=3.7e-15  Score=145.29  Aligned_cols=107  Identities=10%  Similarity=0.010  Sum_probs=91.7

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|+++|  ..               +                  ...++.|.||||+|+..|+.++++.|+
T Consensus        46 ~eivk~LL~~GAdiN--~~---------------~------------------~~sd~~g~TpLh~Aa~~~~~eivklLL   90 (300)
T PHA02884         46 TDIIDAILKLGADPE--AP---------------F------------------PLSENSKTNPLIYAIDCDNDDAAKLLI   90 (300)
T ss_pred             HHHHHHHHHCCCCcc--cc---------------C------------------cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            688999999999998  10               0                  012457999999999999999999999


Q ss_pred             HhCCCccccC-CCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccc
Q 042589          160 DTFPVAIWDL-DPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPW  226 (429)
Q Consensus       160 ~~~~~~~~~~-d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~  226 (429)
                      +++++. +.. +..|.||||+|+..++.+++++|+..|+    +++.+|.+|.||||+|+..++..+.
T Consensus        91 ~~GADV-N~~~~~~g~TpLh~Aa~~~~~eivklLL~~GA----din~kd~~G~TpL~~A~~~~~~~~~  153 (300)
T PHA02884         91 RYGADV-NRYAEEAKITPLYISVLHGCLKCLEILLSYGA----DINIQTNDMVTPIELALMICNNFLA  153 (300)
T ss_pred             HcCCCc-CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHhCChhHH
Confidence            987765 554 5689999999999999999999999998    9999999999999999998776543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.60  E-value=1.2e-15  Score=160.08  Aligned_cols=133  Identities=12%  Similarity=0.045  Sum_probs=92.1

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCc----cccccccCCC-CCCCcccccccCCCCCCcHHHHHHHc---C
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDV----NAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKM---G  150 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~----~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~---G  150 (429)
                      ..++|++|+++|+++|  ..+.|.||+|.+.....    ...+.+++|. .+.+    .+.+|..|.||||.|+..   |
T Consensus        49 ~~~iv~~Ll~~GAdvn--~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad----in~~d~~g~tpL~~a~~~~~~~  122 (494)
T PHA02989         49 KIKIVKLLIDNGADVN--YKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGAD----INLKTFNGVSPIVCFIYNSNIN  122 (494)
T ss_pred             ChHHHHHHHHcCCCcc--CCCCCCCcHHHHHhccCcchhhHHHHHHHHHHCCCC----CCCCCCCCCcHHHHHHHhcccC
Confidence            3578888888888888  55567888886643221    1122333333 3333    255677788888877654   6


Q ss_pred             cHHHHHHHHHhCCCccccCCCCCCcHHHHHHHc--CCHHHHHHHHcCCCcccccccc-ccCCCCcHHHHHHHcC
Q 042589          151 VTEMVKKILDTFPVAIWDLDPGEKNVLLLAIEN--RQTHVYNLLRSREELGETIFWQ-VDNLGNSALHLAATYG  221 (429)
Q Consensus       151 ~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~--g~~~iv~~Ll~~~~~~~~~in~-~D~~G~TpLHlAa~~g  221 (429)
                      +.+++++|++++.+..+..|..|+||||+|+..  ++.+++++|++.|+    +++. .|..|.||||.|+..+
T Consensus       123 ~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Ga----di~~~~~~~g~tpL~~a~~~~  192 (494)
T PHA02989        123 NCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGV----NLFEKTSLYGLTPMNIYLRND  192 (494)
T ss_pred             cHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCC----CccccccccCCChHHHHHhcc
Confidence            788888888876654256778888888887654  57788888888887    6776 5778888888887654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.60  E-value=5.5e-15  Score=160.98  Aligned_cols=137  Identities=15%  Similarity=-0.008  Sum_probs=104.1

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCC-CCCCCcccccccCCCCCCcHHHHHHHcC-cHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETP-PDPNTYKKKNARRSRRKETPILVAAKMG-VTEMVKK  157 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll-~~~~~~~~~~~~~d~~G~TpLh~Aa~~G-~~eiv~~  157 (429)
                      .+.++.|++.|++++ ..|..|+||+|.+....... ..++++ +.+.+    .+.+|.+|+||||+|+..| +.++++.
T Consensus       253 ~~~~~~Ll~~g~~vn-~~d~~g~TpLh~Aa~~~~~~-~iv~lLl~~gad----in~~d~~g~TpLh~Aa~~g~~~~~v~~  326 (682)
T PHA02876        253 LETSLLLYDAGFSVN-SIDDCKNTPLHHASQAPSLS-RLVPKLLERGAD----VNAKNIKGETPLYLMAKNGYDTENIRT  326 (682)
T ss_pred             HHHHHHHHHCCCCCC-CCCCCCCCHHHHHHhCCCHH-HHHHHHHHCCCC----CCCcCCCCCCHHHHHHHhCCCHHHHHH
Confidence            567788889999988 45667999999887533211 122222 22322    2556778999999999999 5889998


Q ss_pred             HHHhCCCccccCCCCCCcHHHHHHHc-CCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          158 ILDTFPVAIWDLDPGEKNVLLLAIEN-RQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       158 Ll~~~~~~~~~~d~~G~t~LH~A~~~-g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |++.+.+ .+..|..|+||||+|+.. ++.+++++|++.|+    ++|.+|..|+||||+|+..|+.++++
T Consensus       327 Ll~~gad-in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~ga----din~~d~~G~TpLh~Aa~~~~~~iv~  392 (682)
T PHA02876        327 LIMLGAD-VNAADRLYITPLHQASTLDRNKDIVITLLELGA----NVNARDYCDKTPIHYAAVRNNVVIIN  392 (682)
T ss_pred             HHHcCCC-CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCC----CCccCCCCCCCHHHHHHHcCCHHHHH
Confidence            8877655 467888999999999875 56888888888887    88899999999999999998877665

>PHA02798 ankyrin-like protein; Provisional

Probab=99.59  E-value=2.1e-15  Score=158.01  Aligned_cols=144  Identities=13%  Similarity=0.080  Sum_probs=108.7

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCc-cccccccCCCC-CCCcccccccCCCCCCcHHHHHHHcCc---HH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDV-NAFTARETPPD-PNTYKKKNARRSRRKETPILVAAKMGV---TE  153 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~-~~~~~i~ll~~-~~~~~~~~~~~d~~G~TpLh~Aa~~G~---~e  153 (429)
                      ..++++.|+++|+++| ..|.+|+||+|.+..... ...+.++++.+ +.+    .+..|.+|.||||+|++.|+   .+
T Consensus        88 ~~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad----vn~~d~~g~tpL~~a~~~~~~~~~~  162 (489)
T PHA02798         88 MLDIVKILIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGAD----TTLLDKDGFTMLQVYLQSNHHIDIE  162 (489)
T ss_pred             HHHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC----ccccCCCCCcHHHHHHHcCCcchHH
Confidence            4789999999999999 466679999998865432 23444444433 332    25677889999999999998   99


Q ss_pred             HHHHHHHhCCCccccC-CCCCCcHHHHHHHc----CCHHHHHHHHcCCCcc-----------------------------
Q 042589          154 MVKKILDTFPVAIWDL-DPGEKNVLLLAIEN----RQTHVYNLLRSREELG-----------------------------  199 (429)
Q Consensus       154 iv~~Ll~~~~~~~~~~-d~~G~t~LH~A~~~----g~~~iv~~Ll~~~~~~-----------------------------  199 (429)
                      +++.|++++.+. +.. +..|.||||.++..    ++.+++++|++.|+..                             
T Consensus       163 vv~~Ll~~gadi-n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i  241 (489)
T PHA02798        163 IIKLLLEKGVDI-NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNI  241 (489)
T ss_pred             HHHHHHHhCCCc-ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHH
Confidence            999999987665 444 46789999998764    4789999998876421                             


Q ss_pred             ------ccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          200 ------ETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       200 ------~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                            ..++|.+|..|+||||+|+..|+.++++.
T Consensus       242 ~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~  276 (489)
T PHA02798        242 LDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEY  276 (489)
T ss_pred             HHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHH
Confidence                  12567789999999999999999887763

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.59  E-value=4.1e-15  Score=133.62  Aligned_cols=88  Identities=11%  Similarity=0.059  Sum_probs=73.3

Q ss_pred             CCCCCCcHHHHHHHcCcHHH---HHHHHHhCCCccccCC-CCCCcHHHHHHHcCCHHHHHHHHc-CCCccccccccccCC
Q 042589          135 RSRRKETPILVAAKMGVTEM---VKKILDTFPVAIWDLD-PGEKNVLLLAIENRQTHVYNLLRS-REELGETIFWQVDNL  209 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~ei---v~~Ll~~~~~~~~~~d-~~G~t~LH~A~~~g~~~iv~~Ll~-~~~~~~~~in~~D~~  209 (429)
                      .|.+|+||||+||..|+.+.   +++|++.+.+ ++.+| ..|+||||+|+..|+.+++++|+. .++    +++.+|.+
T Consensus        53 ~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~ga----d~~~~d~~  127 (166)
T PHA02743         53 YDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INARELGTGNTLLHIAASTKNYELAEWLCRQLGV----NLGAINYQ  127 (166)
T ss_pred             cCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC----CccCcCCC
Confidence            45679999999999988654   7888887655 46677 489999999999999999999995 676    88899999


Q ss_pred             CCcHHHHHHHcCCCcccc
Q 042589          210 GNSALHLAATYGDHRPWH  227 (429)
Q Consensus       210 G~TpLHlAa~~g~~~~~~  227 (429)
                      |.||||+|+..++.++++
T Consensus       128 g~tpL~~A~~~~~~~iv~  145 (166)
T PHA02743        128 HETAYHIAYKMRDRRMME  145 (166)
T ss_pred             CCCHHHHHHHcCCHHHHH
Confidence            999999999999876655

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.59  E-value=2.4e-15  Score=166.75  Aligned_cols=135  Identities=12%  Similarity=0.033  Sum_probs=112.4

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCC-CCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPD-PNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~-~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      .++++.|+++|+++| ..|++|+||+|.|...+..+.  +++|.+ +.+    .+.+|.+|+||||+|+..||.++++.|
T Consensus       538 ~~~l~~Ll~~G~d~n-~~d~~G~TpLh~Aa~~g~~~~--v~~Ll~~gad----in~~d~~G~TpL~~A~~~g~~~iv~~L  610 (823)
T PLN03192        538 AALLEELLKAKLDPD-IGDSKGRTPLHIAASKGYEDC--VLVLLKHACN----VHIRDANGNTALWNAISAKHHKIFRIL  610 (823)
T ss_pred             HHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcChHHH--HHHHHhcCCC----CCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            588999999999999 466779999999887555443  333333 322    356788999999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      ++.+...   .+..|.++||.|+.+|+.+++++|++.|+    ++|.+|.+|+||||+|+..|+.+++++
T Consensus       611 ~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Ga----din~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        611 YHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGL----NVDSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHCCcHHHHHH
Confidence            9764332   24578899999999999999999999998    899999999999999999999887774

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.58  E-value=4.6e-16  Score=137.74  Aligned_cols=124  Identities=9%  Similarity=-0.041  Sum_probs=92.7

Q ss_pred             cccCCCCcccccccCCccccccccCCCCC--CCcccccccCCCCCCcHHHHHHHcCcH---HHHHHHHHhCCCccccCC-
Q 042589           97 YVYNGREPRISTFGQDVNAFTARETPPDP--NTYKKKNARRSRRKETPILVAAKMGVT---EMVKKILDTFPVAIWDLD-  170 (429)
Q Consensus        97 ~d~~G~~P~~~~~~~~~~~~~~i~ll~~~--~~~~~~~~~~d~~G~TpLh~Aa~~G~~---eiv~~Ll~~~~~~~~~~d-  170 (429)
                      .|.+|.||+|.++..+.  ...+......  .......+..|.+|+||||+|+..|+.   ++++.|++.+.+ ++.+| 
T Consensus        13 ~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in~~~~   89 (154)
T PHA02736         13 PDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-INGKER   89 (154)
T ss_pred             cCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-ccccCC
Confidence            45679999998876543  1111000000  000111234578999999999999987   468889988766 46677 


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHcC-CCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          171 PGEKNVLLLAIENRQTHVYNLLRSR-EELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       171 ~~G~t~LH~A~~~g~~~iv~~Ll~~-~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ..|+||||+|+..++.+++++|+.. +.    ++|.+|..|.||||+|+..|+.++++
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~----d~n~~~~~g~tpL~~A~~~~~~~i~~  143 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGV----NMEILNYAFKTPYYVACERHDAKMMN  143 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCC----CCccccCCCCCHHHHHHHcCCHHHHH
Confidence            5999999999999999999999975 66    89999999999999999999977655

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.57  E-value=5.5e-15  Score=128.91  Aligned_cols=87  Identities=21%  Similarity=0.044  Sum_probs=80.4

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNS  212 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~T  212 (429)
                      |.+|++|.||||.|+.+||.+||+.|+..+++ .+.+...|+||||-|+...+.+++.+|++.|+    ++|+..+...|
T Consensus        91 NtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~~va~~LLqhga----DVnA~t~g~lt  165 (228)
T KOG0512|consen   91 NTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNFEVAGRLLQHGA----DVNAQTKGLLT  165 (228)
T ss_pred             cccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccchhHHHHHHhccC----cccccccccch
Confidence            77899999999999999999999999977665 47788999999999999999999999999999    99999999999


Q ss_pred             HHHHHHHcCCCc
Q 042589          213 ALHLAATYGDHR  224 (429)
Q Consensus       213 pLHlAa~~g~~~  224 (429)
                      |||+||...+.+
T Consensus       166 pLhlaa~~rn~r  177 (228)
T KOG0512|consen  166 PLHLAAGNRNSR  177 (228)
T ss_pred             hhHHhhcccchH
Confidence            999999887754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.54  E-value=6.1e-15  Score=162.12  Aligned_cols=148  Identities=19%  Similarity=0.097  Sum_probs=115.3

Q ss_pred             HhhhhchhH-----HHHHHHHHhCCCCCCccccc-CCCCcccccccCCccccccccCCCCCC------------------
Q 042589           71 EKKETHTWA-----IQVFDELVDDRNPHVYKYVY-NGREPRISTFGQDVNAFTARETPPDPN------------------  126 (429)
Q Consensus        71 ~~k~~h~~a-----~~iv~~Ll~~~a~~~~~~d~-~G~~P~~~~~~~~~~~~~~i~ll~~~~------------------  126 (429)
                      +.+..|..+     .++...+++.|.++|  +.+ .|.||+|.+....+.++..+  +.+..                  
T Consensus       440 G~T~lhvaa~~g~~~~~~~~l~~~g~~~n--~~s~~G~T~Lhlaaq~Gh~~~~~l--lle~~~~~~~~~~~~l~~lhla~  515 (1143)
T KOG4177|consen  440 GYTPLHVAAKKGRYLQIARLLLQYGADPN--AVSKQGFTPLHLAAQEGHTEVVQL--LLEGGANDNLDAKKGLTPLHLAA  515 (1143)
T ss_pred             CCChhhhhhhcccHhhhhhhHhhcCCCcc--hhccccCcchhhhhccCCchHHHH--hhhcCCccCccchhccchhhhhh
Confidence            344455544     355667788888888  444 48888887766444443322  11110                  


Q ss_pred             ------------CcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHc
Q 042589          127 ------------TYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRS  194 (429)
Q Consensus       127 ------------~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~  194 (429)
                                  ....+.+.++.+|.||||.||.+|++.+|++||+++.+. +.+|+.|+||||.|+..|+.+++++|++
T Consensus       516 ~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk  594 (1143)
T KOG4177|consen  516 DEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLK  594 (1143)
T ss_pred             hhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHH
Confidence                        002244677889999999999999999999999997775 7788999999999999999999999999


Q ss_pred             CCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          195 REELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       195 ~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      .|+    .+|+.|.+|+||||.|+..|+...++
T Consensus       595 ~GA----~vna~d~~g~TpL~iA~~lg~~~~~k  623 (1143)
T KOG4177|consen  595 HGA----SVNAADLDGFTPLHIAVRLGYLSVVK  623 (1143)
T ss_pred             cCC----CCCcccccCcchhHHHHHhcccchhh
Confidence            999    99999999999999999999988766

>PHA02917 ankyrin-like protein; Provisional

Probab=99.53  E-value=3e-14  Score=153.45  Aligned_cols=138  Identities=12%  Similarity=-0.042  Sum_probs=98.7

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCC-CCCcccccccCC-----------CCCCcHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPD-PNTYKKKNARRS-----------RRKETPILVAA  147 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~-~~~~~~~~~~~d-----------~~G~TpLh~Aa  147 (429)
                      +++|++|+++|+++| ..|..|+||+|.+...+....+.+++|.+ +.+... .+..+           ..+.||||+|+
T Consensus       116 ~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~-~d~~~~~g~~~~~~~~~~~~t~L~~a~  193 (661)
T PHA02917        116 VDLIKVLVEHGFDLS-VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY-EDEDDEYGYAYDDYQPRNCGTVLHLYI  193 (661)
T ss_pred             HHHHHHHHHcCCCCC-ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccc-cccccccccccccccccccccHHHHHH
Confidence            699999999999999 34557999999654333333444555543 332211 11122           33469999998


Q ss_pred             H-----------cCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCH--HHHHHHHcCCCccccccccccCCCCcHH
Q 042589          148 K-----------MGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQT--HVYNLLRSREELGETIFWQVDNLGNSAL  214 (429)
Q Consensus       148 ~-----------~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~--~iv~~Ll~~~~~~~~~in~~D~~G~TpL  214 (429)
                      .           .|+.++|++|++++.+ ++.+|.+|+||||+|+.+|+.  ++|++|++ |+......+..|..|.||+
T Consensus       194 ~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~  271 (661)
T PHA02917        194 ISHLYSESDTRAYVRPEVVKCLINHGIK-PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRG  271 (661)
T ss_pred             hhcccccccccccCcHHHHHHHHHCCCC-cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccch
Confidence            6           5689999999998766 578899999999999999985  79999975 6511111235778899999


Q ss_pred             HHHHHcC
Q 042589          215 HLAATYG  221 (429)
Q Consensus       215 HlAa~~g  221 (429)
                      |+|++.+
T Consensus       272 ~~a~yl~  278 (661)
T PHA02917        272 IMADYLN  278 (661)
T ss_pred             HHHHHHH
Confidence            9999654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.53  E-value=3.7e-15  Score=147.28  Aligned_cols=139  Identities=17%  Similarity=0.096  Sum_probs=113.1

Q ss_pred             HHHHHHHHh-CCCCCCcc----cccC---CCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCc
Q 042589           80 IQVFDELVD-DRNPHVYK----YVYN---GREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGV  151 (429)
Q Consensus        80 ~~iv~~Ll~-~~a~~~~~----~d~~---G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~  151 (429)
                      ..+|++|++ .++++...    .|.+   |.+|+..+.+.++-++  +++|.....   ..|..+....|||--||..|+
T Consensus        55 ~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~v--Vk~L~~~ga---~VN~tT~TNStPLraACfDG~  129 (615)
T KOG0508|consen   55 ADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEV--VKLLLRRGA---SVNDTTRTNSTPLRAACFDGH  129 (615)
T ss_pred             HHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHH--HHHHHHhcC---ccccccccCCccHHHHHhcch
Confidence            678899998 44444311    5553   9999998887666443  455543321   124455667899999999999


Q ss_pred             HHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          152 TEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       152 ~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      .|+|++|++++.+ .+..|..|.|.||+|+..||.+|+++|++.|+    ++|+++..|||+||.++..|+.+++++
T Consensus       130 leivKyLvE~gad-~~IanrhGhTcLmIa~ykGh~~I~qyLle~gA----Dvn~ks~kGNTALH~caEsG~vdivq~  201 (615)
T KOG0508|consen  130 LEIVKYLVEHGAD-PEIANRHGHTCLMIACYKGHVDIAQYLLEQGA----DVNAKSYKGNTALHDCAESGSVDIVQL  201 (615)
T ss_pred             hHHHHHHHHcCCC-CcccccCCCeeEEeeeccCchHHHHHHHHhCC----CcchhcccCchHHHhhhhcccHHHHHH
Confidence            9999999988766 48899999999999999999999999999999    999999999999999999999988773

>PHA02917 ankyrin-like protein; Provisional

Probab=99.52  E-value=3.3e-14  Score=153.20  Aligned_cols=142  Identities=12%  Similarity=-0.019  Sum_probs=105.5

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccc--cccCC-CCCC------------------Cc---------c
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFT--ARETP-PDPN------------------TY---------K  129 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~--~i~ll-~~~~------------------~~---------~  129 (429)
                      .++|++|+++|++++ ..+..|+||||.+...++..+.  .++.| +...                  +.         .
T Consensus        48 ~~~v~~Ll~~ga~v~-~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~G  126 (661)
T PHA02917         48 VEVVKLLLDSGTNPL-HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHG  126 (661)
T ss_pred             HHHHHHHHHCCCCcc-ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcC
Confidence            799999999999999 4566799999977764432211  11111 1100                  00         1


Q ss_pred             cccccCCCCCCcHHHHH--HHcCcHHHHHHHHHhCCCccccCC---CCC-----------CcHHHHHHH-----------
Q 042589          130 KKNARRSRRKETPILVA--AKMGVTEMVKKILDTFPVAIWDLD---PGE-----------KNVLLLAIE-----------  182 (429)
Q Consensus       130 ~~~~~~d~~G~TpLh~A--a~~G~~eiv~~Ll~~~~~~~~~~d---~~G-----------~t~LH~A~~-----------  182 (429)
                      .+.+..|.+|+||||.|  +..|+.+++++|++++.+. +..|   ..|           +||||+|+.           
T Consensus       127 adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~  205 (661)
T PHA02917        127 FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRA  205 (661)
T ss_pred             CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHhhcccccccccc
Confidence            12366788999999964  4578999999999997664 3333   334           599999986           


Q ss_pred             cCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCC--cccc
Q 042589          183 NRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDH--RPWH  227 (429)
Q Consensus       183 ~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~--~~~~  227 (429)
                      +++.+++++|++.|+    ++|.+|.+|+||||+|+..|+.  ++++
T Consensus       206 ~~~~eiv~~Li~~Ga----dvn~~d~~G~TpLh~A~~~g~~~~eivk  248 (661)
T PHA02917        206 YVRPEVVKCLINHGI----KPSSIDKNYCTALQYYIKSSHIDIDIVK  248 (661)
T ss_pred             cCcHHHHHHHHHCCC----CcccCCCCCCcHHHHHHHcCCCcHHHHH
Confidence            468999999999999    9999999999999999999986  3554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.50  E-value=6.4e-14  Score=155.42  Aligned_cols=131  Identities=11%  Similarity=-0.031  Sum_probs=107.1

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      ..+++++|+++|+++| ..|.+|+||+|.|+..++..+  +++|.+....     .....|.+|||.||..|+.++++.|
T Consensus       570 ~~~~v~~Ll~~gadin-~~d~~G~TpL~~A~~~g~~~i--v~~L~~~~~~-----~~~~~~~~~L~~Aa~~g~~~~v~~L  641 (823)
T PLN03192        570 YEDCVLVLLKHACNVH-IRDANGNTALWNAISAKHHKI--FRILYHFASI-----SDPHAAGDLLCTAAKRNDLTAMKEL  641 (823)
T ss_pred             hHHHHHHHHhcCCCCC-CcCCCCCCHHHHHHHhCCHHH--HHHHHhcCcc-----cCcccCchHHHHHHHhCCHHHHHHH
Confidence            3689999999999999 456779999999877555443  3333322211     1224678999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCC-CcHHHHHHHcCC
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLG-NSALHLAATYGD  222 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G-~TpLHlAa~~g~  222 (429)
                      ++++.+ ++.+|.+|+||||+|+.+|+.+++++|++.|+    +++..|.+| .||++++.....
T Consensus       642 l~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA----dv~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        642 LKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLIMNGA----DVDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             HHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC----CCCCCCCCCCCCHHHHHHHHHH
Confidence            998776 47889999999999999999999999999998    899999988 999999876543

>PHA02741 hypothetical protein; Provisional

Probab=99.50  E-value=4.7e-14  Score=127.02  Aligned_cols=91  Identities=21%  Similarity=0.233  Sum_probs=79.7

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhC-----CCccccCCCCCCcHHHHHHHcCC----HHHHHHHHcCCCcccccc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTF-----PVAIWDLDPGEKNVLLLAIENRQ----THVYNLLRSREELGETIF  203 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~-----~~~~~~~d~~G~t~LH~A~~~g~----~~iv~~Ll~~~~~~~~~i  203 (429)
                      +.+|..|.||||+||+.|+.++++.|+...     +..++.+|..|+||||+|+..|+    .+++++|++.++    ++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga----di   90 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA----DI   90 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC----CC
Confidence            556788999999999999999999986532     23467789999999999999999    589999999988    89


Q ss_pred             ccccC-CCCcHHHHHHHcCCCcccc
Q 042589          204 WQVDN-LGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       204 n~~D~-~G~TpLHlAa~~g~~~~~~  227 (429)
                      |.+|. +|+||||+|+..++.++++
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~  115 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAE  115 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHH
Confidence            99985 9999999999999988776

>PHA02730 ankyrin-like protein; Provisional

Probab=99.50  E-value=2.8e-14  Score=151.27  Aligned_cols=142  Identities=9%  Similarity=0.023  Sum_probs=109.9

Q ss_pred             hhHHHHHHHHHhCCCCCCcccccCCCCcccccccCCc--cccccccCCCC-CCCcccccccCCCCCCcHHHH---HHHcC
Q 042589           77 TWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDV--NAFTARETPPD-PNTYKKKNARRSRRKETPILV---AAKMG  150 (429)
Q Consensus        77 ~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~--~~~~~i~ll~~-~~~~~~~~~~~d~~G~TpLh~---Aa~~G  150 (429)
                      ....++++.|+++|+++|  .+..|+||+|.+.....  -..+.+++|.. +...+.  +.+|.+|.||||.   |...+
T Consensus       356 ~v~ieIvelLIs~GAdIN--~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dI--N~kd~~G~T~Lh~~i~a~~~n  431 (672)
T PHA02730        356 MVSIPILRCMLDNGATMD--KTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAI--NHVSNNGRLCMYGLILSRFNN  431 (672)
T ss_pred             cCcHHHHHHHHHCCCCCC--cCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccc--cccccCCCchHhHHHHHHhcc
Confidence            467899999999999999  56789999997654332  12445555543 332233  5667889999994   43332


Q ss_pred             ---------cHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccC-CCCcHHHHHHHc
Q 042589          151 ---------VTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDN-LGNSALHLAATY  220 (429)
Q Consensus       151 ---------~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~-~G~TpLHlAa~~  220 (429)
                               ..+++++|++++.+ ++.+|..|+||||+|+..++.+++++|++.|+    ++|.+|. .|.||||.|+..
T Consensus       432 ~~~~~~e~~~~~ivk~LIs~GAD-INakD~~G~TPLh~Aa~~~~~eive~LI~~GA----dIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        432 CGYHCYETILIDVFDILSKYMDD-IDMIDNENKTLLYYAVDVNNIQFARRLLEYGA----SVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             ccccccchhHHHHHHHHHhcccc-hhccCCCCCCHHHHHHHhCCHHHHHHHHHCCC----CCCCCCCcCCcCHHHHHHHh
Confidence                     23579999988766 58899999999999999999999999999999    8999997 599999999984


Q ss_pred             --CCCcccc
Q 042589          221 --GDHRPWH  227 (429)
Q Consensus       221 --g~~~~~~  227 (429)
                        ++.++++
T Consensus       507 ~~~~~eIv~  515 (672)
T PHA02730        507 RENKTKLVD  515 (672)
T ss_pred             hcCcHHHHH
Confidence              5555554

>PHA02795 ankyrin-like protein; Provisional

Probab=99.47  E-value=5.2e-14  Score=142.77  Aligned_cols=140  Identities=14%  Similarity=-0.050  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhCCCCCC-----cccccCCCCcccccccCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCcH
Q 042589           79 AIQVFDELVDDRNPHV-----YKYVYNGREPRISTFGQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGVT  152 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~-----~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~  152 (429)
                      ..++++.|+.+|+++|     ..++++++|+||.+........+.++.|. .+++...      .++.||||.|+..|+.
T Consensus        89 ~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~------~~~~t~lh~A~~~~~~  162 (437)
T PHA02795         89 YKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK------IECLNAYFRGICKKES  162 (437)
T ss_pred             hHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC------CCCCCHHHHHHHcCcH
Confidence            5799999999999987     23777899999998875556666666554 3444322      2568999999999999


Q ss_pred             HHHHHHHHhCCCccccC-----CCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          153 EMVKKILDTFPVAIWDL-----DPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       153 eiv~~Ll~~~~~~~~~~-----d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +++++|++++.+..+..     +..|.+++|.|+.+++.+++++|++.|+    ++|.+|.+|+||||+|+..|+.++++
T Consensus       163 eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GA----DIN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        163 SVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIE----DINQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             HHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcC----CcCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999975433322     2348899999999999999999999998    99999999999999999999988776


Q ss_pred             c
Q 042589          228 T  228 (429)
Q Consensus       228 ~  228 (429)
                      .
T Consensus       239 l  239 (437)
T PHA02795        239 W  239 (437)
T ss_pred             H
Confidence            3

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.46  E-value=9e-14  Score=152.87  Aligned_cols=133  Identities=17%  Similarity=0.015  Sum_probs=100.6

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccc-cCCCCCCCc-----cc--ccccCCCCCCcHHHHHHHcC
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTAR-ETPPDPNTY-----KK--KNARRSRRKETPILVAAKMG  150 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i-~ll~~~~~~-----~~--~~~~~d~~G~TpLh~Aa~~G  150 (429)
                      ..++++.|+++|+     .++.|.||+|.+..+.......+ ..+.+....     ..  .....+..|.||||+||.+|
T Consensus        65 ~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~  139 (743)
T TIGR00870        65 NLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQ  139 (743)
T ss_pred             hHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhC
Confidence            4689999999987     24469999998876433333322 333322211     00  01122357999999999999


Q ss_pred             cHHHHHHHHHhCCCccccC--------------CCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHH
Q 042589          151 VTEMVKKILDTFPVAIWDL--------------DPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHL  216 (429)
Q Consensus       151 ~~eiv~~Ll~~~~~~~~~~--------------d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHl  216 (429)
                      +.++|+.|++++.+. +.+              ...|+||||+|+..|+.+++++|++.++    ++|.+|..|+||||+
T Consensus       140 ~~eiVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga----din~~d~~g~T~Lh~  214 (743)
T TIGR00870       140 NYEIVKLLLERGASV-PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA----DILTADSLGNTLLHL  214 (743)
T ss_pred             CHHHHHHHHhCCCCC-CcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc----chhhHhhhhhHHHHH
Confidence            999999999987654 222              1369999999999999999999999998    899999999999999


Q ss_pred             HHHcC
Q 042589          217 AATYG  221 (429)
Q Consensus       217 Aa~~g  221 (429)
                      |+..+
T Consensus       215 A~~~~  219 (743)
T TIGR00870       215 LVMEN  219 (743)
T ss_pred             HHhhh
Confidence            99986

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.45  E-value=8.3e-14  Score=130.29  Aligned_cols=89  Identities=24%  Similarity=0.252  Sum_probs=81.4

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNS  212 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~T  212 (429)
                      |..|..|.+||||||+.||..+|+.|+.++.. ++..+....||||+|+.+||-++|+.|++..+    ++|+.++.|+|
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~~ka----dvnavnehgnt  102 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKA----DVNAVNEHGNT  102 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHHHhc----ccchhhccCCC
Confidence            77888999999999999999999999988654 57778888999999999999999999999988    99999999999


Q ss_pred             HHHHHHHcCCCccc
Q 042589          213 ALHLAATYGDHRPW  226 (429)
Q Consensus       213 pLHlAa~~g~~~~~  226 (429)
                      |||+|+..|..++.
T Consensus       103 plhyacfwgydqia  116 (448)
T KOG0195|consen  103 PLHYACFWGYDQIA  116 (448)
T ss_pred             chhhhhhhcHHHHH
Confidence            99999999986543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.44  E-value=2.2e-13  Score=108.83  Aligned_cols=76  Identities=28%  Similarity=0.256  Sum_probs=68.0

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCC
Q 042589          143 ILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGD  222 (429)
Q Consensus       143 Lh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  222 (429)
                      ||+||+.|+.++++.|++.+++. +   . |+||||+|+.+|+.+++++|++.+.    +++.+|.+|+||||+|+..|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~---~-~~~~l~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-N---L-GNTALHYAAENGNLEIVKLLLENGA----DINSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-T---S-SSBHHHHHHHTTTHHHHHHHHHTTT----CTT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-C---C-CCCHHHHHHHcCCHHHHHHHHHhcc----cccccCCCCCCHHHHHHHcCC
Confidence            79999999999999999976543 2   2 9999999999999999999999998    899999999999999999999


Q ss_pred             Ccccc
Q 042589          223 HRPWH  227 (429)
Q Consensus       223 ~~~~~  227 (429)
                      .++++
T Consensus        72 ~~~~~   76 (89)
T PF12796_consen   72 LEIVK   76 (89)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=4.1e-13  Score=129.28  Aligned_cols=123  Identities=17%  Similarity=0.140  Sum_probs=99.2

Q ss_pred             cccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHc-----CcHHHHHHHHHhCCCccccCCC
Q 042589           97 YVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKM-----GVTEMVKKILDTFPVAIWDLDP  171 (429)
Q Consensus        97 ~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~-----G~~eiv~~Ll~~~~~~~~~~d~  171 (429)
                      .|++|+|.+|+++.  +..+.++++|.+...=  +.+++|+-|.||+++||..     .+.++|+.|++. ++.......
T Consensus       264 aDsNGNTALHYsVS--HaNF~VV~~LLDSgvC--~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ  338 (452)
T KOG0514|consen  264 ADSNGNTALHYAVS--HANFDVVSILLDSGVC--DVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQ  338 (452)
T ss_pred             hcCCCCeeeeeeec--ccchHHHHHHhccCcc--cccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhh
Confidence            67789999999985  5556667666655432  2367888999999998864     467899999965 454333456


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          172 GEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       172 ~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      .|+|+|.+|+.+|+.++|+.|+..|+    ++|.+|.+|.|+|+.|+.+||.+++++
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgA----dVNiQDdDGSTALMCA~EHGhkEivkl  391 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGA----DVNIQDDDGSTALMCAAEHGHKEIVKL  391 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccC----CCccccCCccHHHhhhhhhChHHHHHH
Confidence            89999999999999999999999998    999999999999999999999888763

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.43  E-value=2.6e-14  Score=157.16  Aligned_cols=139  Identities=18%  Similarity=0.092  Sum_probs=100.3

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCC-ccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQD-VNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~-~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      ..+|+.++++|++.| -.+..|.||+|.+...+ ...+.. .++..+.    ..+...+.|.||||+|++.||.+++..|
T Consensus       420 ~~~v~l~l~~gA~~~-~~~~lG~T~lhvaa~~g~~~~~~~-~l~~~g~----~~n~~s~~G~T~Lhlaaq~Gh~~~~~ll  493 (1143)
T KOG4177|consen  420 PRVVKLLLKRGASPN-AKAKLGYTPLHVAAKKGRYLQIAR-LLLQYGA----DPNAVSKQGFTPLHLAAQEGHTEVVQLL  493 (1143)
T ss_pred             cceEEEEeccCCChh-hHhhcCCChhhhhhhcccHhhhhh-hHhhcCC----CcchhccccCcchhhhhccCCchHHHHh
Confidence            455666666666666 34445677776665433 111110 1111111    2255567889999999999998888888


Q ss_pred             HHhCC--------------------------------CccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccc
Q 042589          159 LDTFP--------------------------------VAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQV  206 (429)
Q Consensus       159 l~~~~--------------------------------~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~  206 (429)
                      ++...                                ..++.++.+|.||||.|+.+|+.++|++|+++|+    +++.+
T Consensus       494 le~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gA----dv~ak  569 (1143)
T KOG4177|consen  494 LEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGA----DVNAK  569 (1143)
T ss_pred             hhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCc----ccccc
Confidence            87541                                1234477889999999999999999999999999    99999


Q ss_pred             cCCCCcHHHHHHHcCCCccccc
Q 042589          207 DNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       207 D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      |+.|.||||.|+..|+.+++.+
T Consensus       570 ~~~G~TPLH~Aa~~G~~~i~~L  591 (1143)
T KOG4177|consen  570 DKLGYTPLHQAAQQGHNDIAEL  591 (1143)
T ss_pred             CCCCCChhhHHHHcChHHHHHH
Confidence            9999999999999999887764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.41  E-value=3.8e-12  Score=114.30  Aligned_cols=123  Identities=15%  Similarity=0.109  Sum_probs=92.1

Q ss_pred             HHHHHHHhCCCCCCcccccCCCCcccccccCCcc-ccccccCCCCCCCcccccccCC-CCCCcHHHHHHHcCcHHHHHHH
Q 042589           81 QVFDELVDDRNPHVYKYVYNGREPRISTFGQDVN-AFTARETPPDPNTYKKKNARRS-RRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        81 ~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~-~~~~i~ll~~~~~~~~~~~~~d-~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      +++++|+++|++++ ..|+.|+||+|.++..+.. .+..++.|.....   ..+.++ ..|.||||+|+..|+.+++++|
T Consensus        38 ~~~~~l~~~g~~~~-~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga---din~~d~~~g~TpLh~A~~~g~~~iv~~L  113 (166)
T PHA02743         38 EVAPFISGDGHLLH-RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGA---DINARELGTGNTLLHIAASTKNYELAEWL  113 (166)
T ss_pred             HHHHHHhhcchhhh-ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCC---CCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Confidence            45567778888877 4567788888887654332 2222333332221   114455 4799999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCC
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGN  211 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~  211 (429)
                      ++..+..++.+|..|+||||+|+..++.+++++|++.++    +++.+|..|.
T Consensus       114 l~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga----~~~~~~~~~~  162 (166)
T PHA02743        114 CRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGA----VCDDPLSIGL  162 (166)
T ss_pred             HhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcccCCc
Confidence            964344457789999999999999999999999999998    8888887774

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.41  E-value=1.1e-12  Score=104.89  Aligned_cols=64  Identities=25%  Similarity=0.189  Sum_probs=56.7

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccccccccc
Q 042589          139 KETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVD  207 (429)
Q Consensus       139 G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D  207 (429)
                      |.||||+|+..|+.+++++|++.+++ ++.+|.+|+||||+|+.+|+.+++++|++.|.    ++|.+|
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~n   89 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGNLEIVKLLLEHGA----DVNIRN   89 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-----TTSS-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcC
Confidence            88999999999999999999998766 47788999999999999999999999999988    777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.39  E-value=3.3e-13  Score=135.81  Aligned_cols=176  Identities=18%  Similarity=0.122  Sum_probs=119.3

Q ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccccCCc
Q 042589           34 DYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDV  113 (429)
Q Consensus        34 ~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~  113 (429)
                      .|.+|++ |+++-+.+++ +.....+-.+..++...+.-+...  ..++|++|+++|++|| ..|++|+||+|.++.+.+
T Consensus        44 ~l~A~~~-~d~~ev~~ll-~~ga~~~~~n~DglTalhq~~id~--~~e~v~~l~e~ga~Vn-~~d~e~wtPlhaaascg~  118 (527)
T KOG0505|consen   44 FLEACSR-GDLEEVRKLL-NRGASPNLCNVDGLTALHQACIDD--NLEMVKFLVENGANVN-AQDNEGWTPLHAAASCGY  118 (527)
T ss_pred             HHhcccc-ccHHHHHHHh-ccCCCccccCCccchhHHHHHhcc--cHHHHHHHHHhcCCcc-ccccccCCcchhhccccc
Confidence            4677777 8998885544 111111112222233322222222  3699999999999999 678889999997766333


Q ss_pred             cccccc--c-------CCCCCC-Cccc--------------------------------------------ccccCCCCC
Q 042589          114 NAFTAR--E-------TPPDPN-TYKK--------------------------------------------KNARRSRRK  139 (429)
Q Consensus       114 ~~~~~i--~-------ll~~~~-~~~~--------------------------------------------~~~~~d~~G  139 (429)
                      ..+..+  .       ..-++. +.+.                                            ..+.++..|
T Consensus       119 ~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG  198 (527)
T KOG0505|consen  119 LNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARG  198 (527)
T ss_pred             HHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccccc
Confidence            222111  0       000000 0000                                            014455569


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHH
Q 042589          140 ETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAAT  219 (429)
Q Consensus       140 ~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~  219 (429)
                      .|.||+|+.+|+.++.+.|++++.+ .+.+|.+|+||||.|+..|+.+++++|+++++    +++.+...|.||+.+|..
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga----~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQEDACELLVEHGA----DMDAKTKMGETPLDVADE  273 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHhHHHHHHHhhc----ccchhhhcCCCCccchhh
Confidence            9999999999999999999988655 46789999999999999999999999999988    888999999999988765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.38  E-value=5.2e-13  Score=128.59  Aligned_cols=136  Identities=20%  Similarity=0.147  Sum_probs=108.7

Q ss_pred             HHHHHHHHhCCC-CCCcccccC-CCCccccccc---CCccccccc-cCCCCCCCcccccccCCCCCCcHHHHHHHcCcHH
Q 042589           80 IQVFDELVDDRN-PHVYKYVYN-GREPRISTFG---QDVNAFTAR-ETPPDPNTYKKKNARRSRRKETPILVAAKMGVTE  153 (429)
Q Consensus        80 ~~iv~~Ll~~~a-~~~~~~d~~-G~~P~~~~~~---~~~~~~~~i-~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~e  153 (429)
                      .++|+.||+-|. ++|  ..+. |-||.+.+..   .+......+ +|+.-+..+.+    ....|.|+|++|+.+|+++
T Consensus       281 F~VV~~LLDSgvC~VD--~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaK----AsQ~gQTALMLAVSHGr~d  354 (452)
T KOG0514|consen  281 FDVVSILLDSGVCDVD--QQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAK----ASQHGQTALMLAVSHGRVD  354 (452)
T ss_pred             hHHHHHHhccCccccc--ccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchh----hhhhcchhhhhhhhcCcHH
Confidence            589999998886 888  6665 9999875543   344445444 33433332211    2347999999999999999


Q ss_pred             HHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcc
Q 042589          154 MVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRP  225 (429)
Q Consensus       154 iv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~  225 (429)
                      +|+.||..+.+ ++.+|.+|-|+|..|+++||.+++++|+....   +++...|.+|.|+|.+|-..||.++
T Consensus       355 ~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~---cd~sLtD~DgSTAl~IAleagh~eI  422 (452)
T KOG0514|consen  355 MVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS---CDISLTDVDGSTALSIALEAGHREI  422 (452)
T ss_pred             HHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCc---ccceeecCCCchhhhhHHhcCchHH
Confidence            99999966555 68999999999999999999999999998876   3888999999999999999999665

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.36  E-value=1.6e-13  Score=124.02  Aligned_cols=91  Identities=22%  Similarity=0.107  Sum_probs=84.3

Q ss_pred             cccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCC
Q 042589          132 NARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGN  211 (429)
Q Consensus       132 ~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~  211 (429)
                      .|..|+.|.|||.||+.+|+.++|++||+.+.+. ....++..++|.+|+..|..++|++|+.++.    ++|.-|.+|-
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~v----dVNvyDwNGg  227 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREV----DVNVYDWNGG  227 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCC----CcceeccCCC
Confidence            3788999999999999999999999999987664 6667889999999999999999999999987    9999999999


Q ss_pred             cHHHHHHHcCCCcccc
Q 042589          212 SALHLAATYGDHRPWH  227 (429)
Q Consensus       212 TpLHlAa~~g~~~~~~  227 (429)
                      |||-+|++.+|.+++.
T Consensus       228 TpLlyAvrgnhvkcve  243 (296)
T KOG0502|consen  228 TPLLYAVRGNHVKCVE  243 (296)
T ss_pred             ceeeeeecCChHHHHH
Confidence            9999999999988876

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.33  E-value=3.7e-12  Score=119.33  Aligned_cols=75  Identities=20%  Similarity=0.160  Sum_probs=69.1

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHH
Q 042589          138 RKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLA  217 (429)
Q Consensus       138 ~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlA  217 (429)
                      ...||||+||.+||.++|+.|++...+ ++..+..|.||||+|+.-|...+.+-|+..|+    .++..+++|.|||.-|
T Consensus        66 gddtplhlaaahghrdivqkll~~kad-vnavnehgntplhyacfwgydqiaedli~~ga----~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   66 GDDTPLHLAAAHGHRDIVQKLLSRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLISCGA----AVNICNKKGMTPLDKA  140 (448)
T ss_pred             CCCcchhhhhhcccHHHHHHHHHHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHhccc----eeeecccCCCCchhhh
Confidence            457999999999999999999988766 57889999999999999999999999999999    8999999999998754

>PHA02730 ankyrin-like protein; Provisional

Probab=99.32  E-value=1.9e-12  Score=137.45  Aligned_cols=192  Identities=12%  Similarity=-0.070  Sum_probs=125.9

Q ss_pred             CCCchHHHHHHh--hhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCC--CcccccCCCCcc
Q 042589           30 LFPSDYVKCFLK--GIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPH--VYKYVYNGREPR  105 (429)
Q Consensus        30 ~~~~~y~~c~~~--g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~--~~~~d~~G~~P~  105 (429)
                      .-.|++.++.+.  |..+++ +.|+...+++......+...++-.........|++++|+++|++.  + .+|+.+.+|+
T Consensus        41 G~TaLh~A~~~~~~~~~eiv-klLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~-~~~~~~d~~l  118 (672)
T PHA02730         41 GNNALHCYVSNKCDTDIKIV-RLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNE-LTSNINDFDL  118 (672)
T ss_pred             CCcHHHHHHHcCCcCcHHHH-HHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcc-cccccCCchH
Confidence            456888888872  135544 444444444432222222222211111112468999999997655  5 3666789999


Q ss_pred             cccccCCccccccccCCCC--CCCcccccccCC-CCCCcHHHHHHHcCcHHHHHHHHHhCCCcc------ccCCCCCC-c
Q 042589          106 ISTFGQDVNAFTARETPPD--PNTYKKKNARRS-RRKETPILVAAKMGVTEMVKKILDTFPVAI------WDLDPGEK-N  175 (429)
Q Consensus       106 ~~~~~~~~~~~~~i~ll~~--~~~~~~~~~~~d-~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~------~~~d~~G~-t  175 (429)
                      +....++...++.++.|..  +.++....+..+ ..|.+|+++|+..|++|+|++|++.+++..      ...|..+. |
T Consensus       119 ~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~  198 (672)
T PHA02730        119 YSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKN  198 (672)
T ss_pred             HHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccch
Confidence            9777666666666766653  233333223332 379999999999999999999999977652      12344454 5


Q ss_pred             HHHHH------HHcCCHHHHHHHHcCCCccccccccccCCCCcHHHH--HHHcCCCcccc
Q 042589          176 VLLLA------IENRQTHVYNLLRSREELGETIFWQVDNLGNSALHL--AATYGDHRPWH  227 (429)
Q Consensus       176 ~LH~A------~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHl--Aa~~g~~~~~~  227 (429)
                      .||+.      ..+++.+++++|++.|+    ++|.+|.+|.||||+  |...|+.++++
T Consensus       199 ~l~~~il~~~~~~~n~~eiv~lLIs~Ga----dIN~kd~~G~TpLh~~~~~~~~~~eiv~  254 (672)
T PHA02730        199 SLHYYILSHRESESLSKDVIKCLIDNNV----SIHGRDEGGSLPIQYYWSCSTIDIEIVK  254 (672)
T ss_pred             hHHHHHHhhhhhhccCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHcCcccHHHHH
Confidence            56643      45678999999999999    999999999999995  54556666655

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.32  E-value=1.7e-11  Score=108.36  Aligned_cols=64  Identities=19%  Similarity=0.184  Sum_probs=56.5

Q ss_pred             cCC-CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 042589          134 RRS-RRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREE  197 (429)
Q Consensus       134 ~~d-~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~  197 (429)
                      .++ .+|.||||+|+..|+.++++.|+++....++.+|..|+||||+|+..|+.+++++|++.++
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            344 4799999999999999999999975344457889999999999999999999999999887

>PHA02792 ankyrin-like protein; Provisional

Probab=99.32  E-value=2.1e-12  Score=135.91  Aligned_cols=57  Identities=21%  Similarity=0.060  Sum_probs=49.2

Q ss_pred             ccCCCCCCcHHHHHHHcC-------CHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcC--CCcccc
Q 042589          167 WDLDPGEKNVLLLAIENR-------QTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYG--DHRPWH  227 (429)
Q Consensus       167 ~~~d~~G~t~LH~A~~~g-------~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g--~~~~~~  227 (429)
                      +..|..|+||||+|+.++       +.+++++|+++|+    .++.+|+.|.||||.|+...  +.++++
T Consensus       169 ~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~----~~~~~d~~g~t~l~~~~~~~~i~~ei~~  234 (631)
T PHA02792        169 DYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEK----EMRYYTYREHTTLYYYVDKCDIKREIFD  234 (631)
T ss_pred             ccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCC----CcCccCCCCChHHHHHHHcccchHHHHH
Confidence            456778999999999999       8999999999998    89999999999999999998  444444

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.31  E-value=1.8e-12  Score=94.87  Aligned_cols=56  Identities=23%  Similarity=0.180  Sum_probs=29.1

Q ss_pred             HHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHH
Q 042589          158 ILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLA  217 (429)
Q Consensus       158 Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlA  217 (429)
                      ||++++..++..|..|+||||+|+.+|+.+++++|++.+.    +++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~----d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGA----DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT------TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcC----CCCCCcCCCCCHHHhC
Confidence            4566656667788888888888888888888888887776    7888888888888876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.29  E-value=7e-12  Score=90.86  Aligned_cols=54  Identities=28%  Similarity=0.292  Sum_probs=43.6

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 042589          139 KETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLR  193 (429)
Q Consensus       139 G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll  193 (429)
                      |+||||+||+.|+.++++.|++++.+ ++.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999988766 5777999999999999999999999986

...

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.25  E-value=9.6e-12  Score=112.57  Aligned_cols=81  Identities=21%  Similarity=0.197  Sum_probs=76.7

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHH
Q 042589          137 RRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHL  216 (429)
Q Consensus       137 ~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHl  216 (429)
                      +...|+|.+|++.|..++|+.||++.++. +..|-+|-|||-+|++.+|.++++.|+..|+    +++..|..|++++.+
T Consensus       191 k~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA----d~t~e~dsGy~~mdl  265 (296)
T KOG0502|consen  191 KYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVESLLNSGA----DVTQEDDSGYWIMDL  265 (296)
T ss_pred             hhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHHHHhcCC----CcccccccCCcHHHH
Confidence            45789999999999999999999998885 7889999999999999999999999999999    999999999999999


Q ss_pred             HHHcCC
Q 042589          217 AATYGD  222 (429)
Q Consensus       217 Aa~~g~  222 (429)
                      |+..|.
T Consensus       266 AValGy  271 (296)
T KOG0502|consen  266 AVALGY  271 (296)
T ss_pred             HHHhhh
Confidence            999997

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.25  E-value=2.3e-11  Score=111.77  Aligned_cols=90  Identities=22%  Similarity=0.136  Sum_probs=82.8

Q ss_pred             cCCCCCCcHHHHHHHcCc-----HHHHHHHHHhCC--CccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccc
Q 042589          134 RRSRRKETPILVAAKMGV-----TEMVKKILDTFP--VAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQV  206 (429)
Q Consensus       134 ~~d~~G~TpLh~Aa~~G~-----~eiv~~Ll~~~~--~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~  206 (429)
                      .++.+|.||||+|+..|+     .++++.|++.+.  +.....|..|+||||+|+..|+.+++++|++.++    .++.+
T Consensus       101 ~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~----~~~~~  176 (235)
T COG0666         101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA----DPNSR  176 (235)
T ss_pred             cccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCC----CCccc
Confidence            466789999999999999     999999999988  5777789999999999999999999999999998    88899


Q ss_pred             cCCCCcHHHHHHHcCCCcccc
Q 042589          207 DNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       207 D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |..|.|+||+|+..++.+.+.
T Consensus       177 ~~~g~t~l~~a~~~~~~~~~~  197 (235)
T COG0666         177 NSYGVTALDPAAKNGRIELVK  197 (235)
T ss_pred             ccCCCcchhhhcccchHHHHH
Confidence            999999999999999966554

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.23  E-value=3.9e-12  Score=128.15  Aligned_cols=138  Identities=17%  Similarity=0.101  Sum_probs=109.9

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccC-CCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARET-PPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~l-l~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      .+=+..|+..|++.| .+..+|-|++|..+...+..+  ++. ++.+.    +.|+.|..||||||.|+..||..++++|
T Consensus        53 ~~ev~~ll~~ga~~~-~~n~DglTalhq~~id~~~e~--v~~l~e~ga----~Vn~~d~e~wtPlhaaascg~~~i~~~l  125 (527)
T KOG0505|consen   53 LEEVRKLLNRGASPN-LCNVDGLTALHQACIDDNLEM--VKFLVENGA----NVNAQDNEGWTPLHAAASCGYLNIVEYL  125 (527)
T ss_pred             HHHHHHHhccCCCcc-ccCCccchhHHHHHhcccHHH--HHHHHHhcC----CccccccccCCcchhhcccccHHHHHHH
Confidence            345788999999888 466679999998865333222  222 23222    3378899999999999999999999999


Q ss_pred             HHhCCCccc----------------------------------------------------------cCCCCCCcHHHHH
Q 042589          159 LDTFPVAIW----------------------------------------------------------DLDPGEKNVLLLA  180 (429)
Q Consensus       159 l~~~~~~~~----------------------------------------------------------~~d~~G~t~LH~A  180 (429)
                      ++++.+...                                                          ..+..|.|.||+|
T Consensus       126 i~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvA  205 (527)
T KOG0505|consen  126 IQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVA  205 (527)
T ss_pred             HHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHH
Confidence            988643211                                                          1455699999999


Q ss_pred             HHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          181 IENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       181 ~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      +.+|..++.++|++.+.    .++.+|.+|+||||.|+..|+.++..+
T Consensus       206 aa~Gy~e~~~lLl~ag~----~~~~~D~dgWtPlHAAA~Wg~~~~~el  249 (527)
T KOG0505|consen  206 AANGYTEVAALLLQAGY----SVNIKDYDGWTPLHAAAHWGQEDACEL  249 (527)
T ss_pred             HhhhHHHHHHHHHHhcc----CcccccccCCCcccHHHHhhhHhHHHH
Confidence            99999999999999998    899999999999999999999887664

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.23  E-value=9e-12  Score=137.10  Aligned_cols=134  Identities=15%  Similarity=0.045  Sum_probs=92.3

Q ss_pred             HHHHHHHhC--CCCCCcccccCCCCccc-ccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcC---cHHH
Q 042589           81 QVFDELVDD--RNPHVYKYVYNGREPRI-STFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMG---VTEM  154 (429)
Q Consensus        81 ~iv~~Ll~~--~a~~~~~~d~~G~~P~~-~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G---~~ei  154 (429)
                      +.++.++++  +.++| ..|..|+||+| .+..++..++  +++|.+...       .+..|.||||.|+..+   ..++
T Consensus        31 ~~v~~lL~~~~~~~in-~~d~~G~t~Lh~~A~~~~~~ei--v~lLl~~g~-------~~~~G~T~Lh~A~~~~~~~v~~l  100 (743)
T TIGR00870        31 ASVYRDLEEPKKLNIN-CPDRLGRSALFVAAIENENLEL--TELLLNLSC-------RGAVGDTLLHAISLEYVDAVEAI  100 (743)
T ss_pred             HHHHHHhccccccCCC-CcCccchhHHHHHHHhcChHHH--HHHHHhCCC-------CCCcChHHHHHHHhccHHHHHHH
Confidence            344677777  77888 34556999999 7765444333  444443322       3568999999999722   2233


Q ss_pred             HHHHHHhCCC---------ccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccccccccc--------------CCCC
Q 042589          155 VKKILDTFPV---------AIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVD--------------NLGN  211 (429)
Q Consensus       155 v~~Ll~~~~~---------~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D--------------~~G~  211 (429)
                      +..+.+..++         .....+..|.||||+|+.+|+.+++++|+++|+    ++|.++              .+|.
T Consensus       101 l~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GA----dv~~~~~~~~~~~~~~~~~~~~g~  176 (743)
T TIGR00870       101 LLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGA----SVPARACGDFFVKSQGVDSFYHGE  176 (743)
T ss_pred             HHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCC----CCCcCcCCchhhcCCCCCcccccc
Confidence            3333333322         011123579999999999999999999999998    666543              3699


Q ss_pred             cHHHHHHHcCCCccccc
Q 042589          212 SALHLAATYGDHRPWHT  228 (429)
Q Consensus       212 TpLHlAa~~g~~~~~~~  228 (429)
                      ||||.|+..|+.+++++
T Consensus       177 tpL~~Aa~~~~~~iv~l  193 (743)
T TIGR00870       177 SPLNAAACLGSPSIVAL  193 (743)
T ss_pred             cHHHHHHHhCCHHHHHH
Confidence            99999999999887763

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.22  E-value=5.4e-11  Score=99.09  Aligned_cols=83  Identities=31%  Similarity=0.328  Sum_probs=39.2

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSAL  214 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpL  214 (429)
                      .+..|.||+|.|+..++.++++.|++.++. .+..+..|.||+|+|+..++.+++++|++.+.    .++..|..|.|||
T Consensus        36 ~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~----~~~~~~~~~~~~l  110 (126)
T cd00204          36 KDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGA----DVNARDKDGRTPL  110 (126)
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC----CCcccCCCCCCHH
Confidence            344445555555555555555555544322 23334444455555555555555555554443    3444444455555


Q ss_pred             HHHHHcCC
Q 042589          215 HLAATYGD  222 (429)
Q Consensus       215 HlAa~~g~  222 (429)
                      |.|...++
T Consensus       111 ~~~~~~~~  118 (126)
T cd00204         111 HLAAKNGH  118 (126)
T ss_pred             HHHHhcCC
Confidence            55544433

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.20  E-value=4.5e-11  Score=116.76  Aligned_cols=90  Identities=13%  Similarity=0.101  Sum_probs=76.3

Q ss_pred             cCCCCCCcH-HHHHHHcCcHHHHHHHHHhCCCccccC----CCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccc-c
Q 042589          134 RRSRRKETP-ILVAAKMGVTEMVKKILDTFPVAIWDL----DPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQV-D  207 (429)
Q Consensus       134 ~~d~~G~Tp-Lh~Aa~~G~~eiv~~Ll~~~~~~~~~~----d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~-D  207 (429)
                      .+|+.|+|| ||.|++.|+.++++.|++++++. +.+    |..|.||||+|+..++.+++++|++.|+    ++|.+ +
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GA----DVN~~~~  101 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGA----DVNRYAE  101 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CcCcccC
Confidence            345667765 66777889999999999998764 544    4689999999999999999999999999    89986 4


Q ss_pred             CCCCcHHHHHHHcCCCccccc
Q 042589          208 NLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       208 ~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      ..|.||||.|+..|+.+++++
T Consensus       102 ~~g~TpLh~Aa~~~~~eivkl  122 (300)
T PHA02884        102 EAKITPLYISVLHGCLKCLEI  122 (300)
T ss_pred             CCCCCHHHHHHHcCCHHHHHH
Confidence            689999999999999887663

>PHA02792 ankyrin-like protein; Provisional

Probab=99.20  E-value=5.9e-11  Score=125.04  Aligned_cols=129  Identities=12%  Similarity=0.135  Sum_probs=96.0

Q ss_pred             hhHHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCC-CCCCcccccccCCCC--CCcHHHHHHHcCcH-
Q 042589           77 TWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPP-DPNTYKKKNARRSRR--KETPILVAAKMGVT-  152 (429)
Q Consensus        77 ~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~--G~TpLh~Aa~~G~~-  152 (429)
                      ....+++++|+++|++.+  .+ .+.++++.++..  ...+.++.|. .+.+.    +.+|.+  |.||||.|+..+.. 
T Consensus       318 ~v~ieiIK~LId~Ga~~~--r~-~~~n~~~~Aa~~--gn~eIVelLIs~GADI----N~kD~~g~~~TpLh~A~~n~~~~  388 (631)
T PHA02792        318 TVYINVIKCMIDEGATLY--RF-KHINKYFQKFDN--RDPKVVEYILKNGNVV----VEDDDNIINIMPLFPTLSIHESD  388 (631)
T ss_pred             CccHHHHHHHHHCCCccc--cC-CcchHHHHHHHc--CCHHHHHHHHHcCCch----hhhcCCCCChhHHHHHHHhccHh
Confidence            467899999999999876  21 133344444322  2233344443 33332    334444  57999998877664 


Q ss_pred             --HHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHH
Q 042589          153 --EMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAAT  219 (429)
Q Consensus       153 --eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~  219 (429)
                        ++++.|++++++ ++.+|..|+||||+|+..++.+++++|++.|+    ++|.+|..|+||||.|+.
T Consensus       389 v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~GA----DIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        389 VLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDNGA----DINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHH
Confidence              467888888766 57889999999999999999999999999998    899999999999999986

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.19  E-value=5.9e-11  Score=93.51  Aligned_cols=73  Identities=19%  Similarity=0.102  Sum_probs=63.7

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHH
Q 042589          138 RKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALH  215 (429)
Q Consensus       138 ~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLH  215 (429)
                      .|+||||+||-.|..+++++|+..+.+ ++..|++|-|||..|++.||.++|++|+++|+    +-..+-.+|.+.+.
T Consensus        33 ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~~cVklLL~~GA----drt~~~PdG~~~~e  105 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHRDCVKLLLQNGA----DRTIHAPDGTALIE  105 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhHHHHHHHHHcCc----ccceeCCCchhHHh
Confidence            699999999999999999999988766 57889999999999999999999999999998    66667777766654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.18  E-value=2e-10  Score=95.55  Aligned_cols=88  Identities=30%  Similarity=0.308  Sum_probs=79.2

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSAL  214 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpL  214 (429)
                      .|.+|.||||.|+..|+.++++.|++.++.. ...|..|.||||.|+..++.+++++|++.+.    .++..|..|.||+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~l   77 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA----DVNARDKDGNTPL   77 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCCHH
Confidence            3467999999999999999999999887664 6678999999999999999999999999987    7888899999999


Q ss_pred             HHHHHcCCCcccc
Q 042589          215 HLAATYGDHRPWH  227 (429)
Q Consensus       215 HlAa~~g~~~~~~  227 (429)
                      |+|+..++.++++
T Consensus        78 ~~a~~~~~~~~~~   90 (126)
T cd00204          78 HLAARNGNLDVVK   90 (126)
T ss_pred             HHHHHcCcHHHHH
Confidence            9999999977665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.18  E-value=8.3e-11  Score=122.64  Aligned_cols=177  Identities=16%  Similarity=0.040  Sum_probs=121.6

Q ss_pred             CCCchHHHHHHhhhHHHHHHHH-HHHHHHHHhcCchhhHhHHHhhhhchhH----HHHHHHHHhCCCCCCccccc-CCCC
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIE-LNVIWYAIYAGIRGIKNVREKKETHTWA----IQVFDELVDDRNPHVYKYVY-NGRE  103 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l-~~~~~~~~~~g~~~i~~i~~~k~~h~~a----~~iv~~Ll~~~a~~~~~~d~-~G~~  103 (429)
                      .|..+.++|++ |....+.-++ .++.+        .+.+.+..+..|..+    .++||.|+.++..+|  ..+ +|-+
T Consensus        49 gfTalhha~Ln-g~~~is~llle~ea~l--------dl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~n--a~~~e~~t  117 (854)
T KOG0507|consen   49 GFTLLHHAVLN-GQNQISKLLLDYEALL--------DLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILN--AVNIENET  117 (854)
T ss_pred             chhHHHHHHhc-CchHHHHHHhcchhhh--------hhhhccCcceEEehhhcCcchHHHHHHhcccCCC--cccccCcC
Confidence            68899999999 7777663322 22222        233445555556444    589999999998888  555 4888


Q ss_pred             cccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCC-------ccccCCCCCCcH
Q 042589          104 PRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPV-------AIWDLDPGEKNV  176 (429)
Q Consensus       104 P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~-------~~~~~d~~G~t~  176 (429)
                      |+|.++..++.++..+ |+.++++..+    +|+.+.|+|-+|++.|..++|+.|++..-.       ....++-.+-+|
T Consensus       118 plhlaaqhgh~dvv~~-Ll~~~adp~i----~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~p  192 (854)
T KOG0507|consen  118 PLHLAAQHGHLEVVFY-LLKKNADPFI----RNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYP  192 (854)
T ss_pred             ccchhhhhcchHHHHH-HHhcCCCccc----cCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCC
Confidence            8888876555544333 3344444433    566788888888888888888888865210       012244566778


Q ss_pred             HHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          177 LLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       177 LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ||+|+++||.++++.|++.|-    ++|...+.| |+||-|+..|..++++
T Consensus       193 lHlaakngh~~~~~~ll~ag~----din~~t~~g-talheaalcgk~evvr  238 (854)
T KOG0507|consen  193 LHLAAKNGHVECMQALLEAGF----DINYTTEDG-TALHEAALCGKAEVVR  238 (854)
T ss_pred             cchhhhcchHHHHHHHHhcCC----Ccccccccc-hhhhhHhhcCcchhhh
Confidence            888888888888888888886    777776665 8888888888877766

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.16  E-value=3.5e-11  Score=87.94  Aligned_cols=47  Identities=23%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHH
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLA  180 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A  180 (429)
                      +.+|..|.||||+||+.|+.+++++|++. +...+.+|.+|+||||+|
T Consensus        10 n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~-g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   10 NAQDKYGNTPLHWAARYGHSEVVRLLLQN-GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T---TTS--HHHHHHHHT-HHHHHHHHHC-T--TT---TTS--HHHH-
T ss_pred             cCcCCCCCcHHHHHHHcCcHHHHHHHHHC-cCCCCCCcCCCCCHHHhC
Confidence            56788999999999999999999999955 445688999999999997

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.12  E-value=8.8e-10  Score=116.31  Aligned_cols=88  Identities=23%  Similarity=0.200  Sum_probs=78.3

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHH
Q 042589          137 RRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHL  216 (429)
Q Consensus       137 ~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHl  216 (429)
                      .-|..||-+||--++.|++++|+++++| ++.+|++|+|.||.-+.+-..++++++++.++.  .+...+|+.|-|||-+
T Consensus       238 YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtL  314 (782)
T KOG3676|consen  238 YFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTL  314 (782)
T ss_pred             eeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHH
Confidence            3689999999999999999999997665 588999999999999999999999999999982  2477899999999999


Q ss_pred             HHHcCCCcccc
Q 042589          217 AATYGDHRPWH  227 (429)
Q Consensus       217 Aa~~g~~~~~~  227 (429)
                      ||+.|..++++
T Consensus       315 AaklGk~emf~  325 (782)
T KOG3676|consen  315 AAKLGKKEMFQ  325 (782)
T ss_pred             HHHhhhHHHHH
Confidence            99999976543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.11  E-value=6.1e-11  Score=85.89  Aligned_cols=51  Identities=22%  Similarity=0.196  Sum_probs=41.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          173 EKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       173 G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |+||||+|+..|+.+++++|++.+.    ++|.+|.+|+||||.|+..|+.++++
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~----din~~d~~g~t~lh~A~~~g~~~~~~   51 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGA----DINAQDEDGRTPLHYAAKNGNIDIVK   51 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTS----GTT-B-TTS--HHHHHHHTT-HHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHccCHHHHH
Confidence            7899999999999999999999987    89999999999999999999977654

...

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.09  E-value=1.7e-10  Score=101.06  Aligned_cols=83  Identities=19%  Similarity=0.073  Sum_probs=77.9

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHc
Q 042589          141 TPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATY  220 (429)
Q Consensus       141 TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~  220 (429)
                      --+.+|+..+..+.|+.||+..++.++.+|.+|.||||-|+.+||.+|++.|+..++    +.+++..+|+||||-|++.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gA----n~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGA----NKEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccC----CcccccccCccchhhhhcc
Confidence            346899999999999999999999999999999999999999999999999999999    8999999999999999999


Q ss_pred             CCCcccc
Q 042589          221 GDHRPWH  227 (429)
Q Consensus       221 g~~~~~~  227 (429)
                      .+.++..
T Consensus       141 nN~~va~  147 (228)
T KOG0512|consen  141 NNFEVAG  147 (228)
T ss_pred             cchhHHH
Confidence            9977654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.07  E-value=4.7e-10  Score=121.62  Aligned_cols=96  Identities=21%  Similarity=0.076  Sum_probs=83.6

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+.++.|+++|+++|                                       .+|.+|.||||+||..|+.+++++|+
T Consensus        95 ~~~vk~LL~~Gadin---------------------------------------~~d~~G~TpLh~Aa~~g~~eiv~~LL  135 (664)
T PTZ00322         95 AVGARILLTGGADPN---------------------------------------CRDYDGRTPLHIACANGHVQVVRVLL  135 (664)
T ss_pred             HHHHHHHHHCCCCCC---------------------------------------CcCCCCCcHHHHHHHCCCHHHHHHHH
Confidence            567899999999887                                       24668999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcC-------CCccccccccccCCCCcHHHHHHH
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSR-------EELGETIFWQVDNLGNSALHLAAT  219 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~-------~~~~~~~in~~D~~G~TpLHlAa~  219 (429)
                      +++.+ ++.+|.+|+||||+|+.+|+.+++++|++.       ++    ..+..+.+|.+|+..+..
T Consensus       136 ~~Gad-vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga----~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        136 EFGAD-PTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGA----NAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             HCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCC----CCCccccCCCCccchhhh
Confidence            98766 478899999999999999999999999988       44    777888888888876654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.06  E-value=1e-10  Score=122.01  Aligned_cols=117  Identities=18%  Similarity=0.123  Sum_probs=91.7

Q ss_pred             CCCCcccccccCCccccccccCCCCCCCc-ccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHH
Q 042589          100 NGREPRISTFGQDVNAFTARETPPDPNTY-KKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLL  178 (429)
Q Consensus       100 ~G~~P~~~~~~~~~~~~~~i~ll~~~~~~-~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH  178 (429)
                      +|-|.+|.++..+...+  ++++++.+.. ++    .|.+|.+|||+||+.|+.|+|+.++... +..+.....|.||||
T Consensus        48 ~gfTalhha~Lng~~~i--s~llle~ea~ldl----~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplh  120 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQI--SKLLLDYEALLDL----CDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLH  120 (854)
T ss_pred             cchhHHHHHHhcCchHH--HHHHhcchhhhhh----hhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccc
Confidence            46677776665444433  2344443332 22    2357999999999999999999999775 656777889999999


Q ss_pred             HHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          179 LAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       179 ~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      .|+++||.++|.+|++.++    +.-.+|+.+.|+|.+|++.|..+++.
T Consensus       121 laaqhgh~dvv~~Ll~~~a----dp~i~nns~~t~ldlA~qfgr~~Vvq  165 (854)
T KOG0507|consen  121 LAAQHGHLEVVFYLLKKNA----DPFIRNNSKETVLDLASRFGRAEVVQ  165 (854)
T ss_pred             hhhhhcchHHHHHHHhcCC----CccccCcccccHHHHHHHhhhhHHHH
Confidence            9999999999999999998    77889999999999999999987765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.01  E-value=5.6e-10  Score=121.03  Aligned_cols=83  Identities=18%  Similarity=0.041  Sum_probs=76.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHH
Q 042589          140 ETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAAT  219 (429)
Q Consensus       140 ~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~  219 (429)
                      .++||.||..|+.++++.|++.+.+ ++.+|..|+||||+|+.+|+.+++++|++.|+    ++|.+|.+|+||||+|+.
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Ga----dvn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGA----DPTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHH
Confidence            3569999999999999999988766 57789999999999999999999999999998    899999999999999999


Q ss_pred             cCCCcccc
Q 042589          220 YGDHRPWH  227 (429)
Q Consensus       220 ~g~~~~~~  227 (429)
                      .|+.++++
T Consensus       158 ~g~~~iv~  165 (664)
T PTZ00322        158 NGFREVVQ  165 (664)
T ss_pred             CCcHHHHH
Confidence            99977665

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.96  E-value=6.6e-10  Score=87.64  Aligned_cols=82  Identities=18%  Similarity=0.082  Sum_probs=72.2

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHc
Q 042589          141 TPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATY  220 (429)
Q Consensus       141 TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~  220 (429)
                      -.+.|+.++|..+-|+..+..+-+. +. -..||+|||+|+-.|+.++++||+..|+    +++.+|++|-|||.-|+..
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nV-n~-~~ggR~plhyAAD~GQl~ilefli~iGA----~i~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNV-NE-IYGGRTPLHYAADYGQLSILEFLISIGA----NIQDKDKYGITPLLSAVWE   77 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccH-HH-HhCCcccchHhhhcchHHHHHHHHHhcc----ccCCccccCCcHHHHHHHH
Confidence            4478999999999999998776443 22 2489999999999999999999999999    9999999999999999999


Q ss_pred             CCCccccc
Q 042589          221 GDHRPWHT  228 (429)
Q Consensus       221 g~~~~~~~  228 (429)
                      ||.+++++
T Consensus        78 GH~~cVkl   85 (117)
T KOG4214|consen   78 GHRDCVKL   85 (117)
T ss_pred             hhHHHHHH
Confidence            99888874

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.91  E-value=2.6e-09  Score=100.43  Aligned_cols=92  Identities=20%  Similarity=0.155  Sum_probs=84.5

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNS  212 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~T  212 (429)
                      |.+|.+|+|||..|+.+|+.++|+.||+.+.|.....+..+.||||.|+.+|+.++.++|++.|+    .....+.-|+|
T Consensus        39 n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa----~~~~vNsvgrT  114 (396)
T KOG1710|consen   39 NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGA----RMYLVNSVGRT  114 (396)
T ss_pred             hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccC----ccccccchhhh
Confidence            66889999999999999999999999999988877778899999999999999999999999998    66777888999


Q ss_pred             HHHHHHHcCCCccccc
Q 042589          213 ALHLAATYGDHRPWHT  228 (429)
Q Consensus       213 pLHlAa~~g~~~~~~~  228 (429)
                      +-..||.-||.+.+.+
T Consensus       115 AaqmAAFVG~H~CV~i  130 (396)
T KOG1710|consen  115 AAQMAAFVGHHECVAI  130 (396)
T ss_pred             HHHHHHHhcchHHHHH
Confidence            9999999999887753

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.90  E-value=5.8e-09  Score=95.72  Aligned_cols=93  Identities=28%  Similarity=0.198  Sum_probs=81.6

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCC-----HHHHHHHHcCCCcccccccccc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQ-----THVYNLLRSREELGETIFWQVD  207 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~-----~~iv~~Ll~~~~~~~~~in~~D  207 (429)
                      ...+..+.+++|.|+..|..+++++++..+.+. +.+|..|.||||+|+.+++     .+++++|++.++. ....+.+|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~-~~~~~~~~  144 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD-LDVNNLRD  144 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC-CCCccccC
Confidence            345567999999999999999999999888776 8899999999999999999     9999999999871 01677889


Q ss_pred             CCCCcHHHHHHHcCCCcccc
Q 042589          208 NLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       208 ~~G~TpLHlAa~~g~~~~~~  227 (429)
                      .+|+||||+|+..|+.+++.
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~  164 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVE  164 (235)
T ss_pred             CCCCchhHHHHHcCchHHHH
Confidence            99999999999999986655

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.87  E-value=2.5e-09  Score=107.51  Aligned_cols=80  Identities=20%  Similarity=0.131  Sum_probs=71.1

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCC
Q 042589          143 ILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGD  222 (429)
Q Consensus       143 Lh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  222 (429)
                      |.-|+..|..++|+.++..-.|. ...+..|-|+||-|++.||.+||+||++.|+    ++|+.|.+|+||||+||..++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ga----nVNa~DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGA----NVNAADSDGWTPLHCAASCNN  628 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCC----cccCccCCCCchhhhhhhcCc
Confidence            34599999999999999775443 5678899999999999999999999999999    999999999999999999988


Q ss_pred             Ccccc
Q 042589          223 HRPWH  227 (429)
Q Consensus       223 ~~~~~  227 (429)
                      ..+++
T Consensus       629 v~~ck  633 (752)
T KOG0515|consen  629 VPMCK  633 (752)
T ss_pred             hHHHH
Confidence            76554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.64  E-value=6.9e-08  Score=97.31  Aligned_cols=76  Identities=14%  Similarity=0.019  Sum_probs=63.9

Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccccccc-ccCCCCc
Q 042589          134 RRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQ-VDNLGNS  212 (429)
Q Consensus       134 ~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~-~D~~G~T  212 (429)
                      +.++.|-|+||-|+..||.+||++||+.+.+ ++..|++||||||+|+..++..+++.|++.|+    .+-+ .=.++.|
T Consensus       578 qpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv~~ckqLVe~Ga----avfAsTlSDmeT  652 (752)
T KOG0515|consen  578 QPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNVPMCKQLVESGA----AVFASTLSDMET  652 (752)
T ss_pred             CCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCchHHHHHHHhccc----eEEeeecccccc
Confidence            3566899999999999999999999988666 58899999999999999999999999999987    3333 3345556


Q ss_pred             HH
Q 042589          213 AL  214 (429)
Q Consensus       213 pL  214 (429)
                      |.
T Consensus       653 a~  654 (752)
T KOG0515|consen  653 AA  654 (752)
T ss_pred             hh
Confidence            54

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.58  E-value=4.8e-08  Score=97.34  Aligned_cols=127  Identities=17%  Similarity=0.113  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      .+...+.|+++-.-.|  ||+-    .|.+.              .+.++.-....++.++.-++.+||+.|.+..++.+
T Consensus       466 Gv~Fc~~Lvs~fNFHN--YD~L----~h~~~--------------~K~DPRR~~~~~~~~~~i~~~~aa~~GD~~alrRf  525 (622)
T KOG0506|consen  466 GVAFCRQLVSKFNFHN--YDSL----RHPDN--------------RKIDPRREGGPRENDTVINVMYAAKNGDLSALRRF  525 (622)
T ss_pred             cHHHHHHHHHHhcccC--chhh----ccccc--------------ccCCcccccCcccccchhhhhhhhhcCCHHHHHHH
Confidence            4566778888877777  6541    11110              01111111123456778899999999999999887


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccccc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTL  229 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~~  229 (429)
                      .-.+.+ ++..|.+.||+||+|+..|+.++++||++....   +.+.+|..|+|||.-|...+|.+++++.
T Consensus       526 ~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv---~~~~kDRw~rtPlDdA~~F~h~~v~k~L  592 (622)
T KOG0506|consen  526 ALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKV---DPDPKDRWGRTPLDDAKHFKHKEVVKLL  592 (622)
T ss_pred             HHhccc-ccccccccchhheeecccCceeHHHHHHHHHcC---CCChhhccCCCcchHhHhcCcHHHHHHH
Confidence            755444 588999999999999999999999999987653   8999999999999999999998777653

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.56  E-value=1.2e-07  Score=100.48  Aligned_cols=80  Identities=19%  Similarity=0.079  Sum_probs=69.5

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhCCCcccc-------CC---------------CCCCcHHHHHHHcCCHHHHHHHHc
Q 042589          137 RRKETPILVAAKMGVTEMVKKILDTFPVAIWD-------LD---------------PGEKNVLLLAIENRQTHVYNLLRS  194 (429)
Q Consensus       137 ~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~-------~d---------------~~G~t~LH~A~~~g~~~iv~~Ll~  194 (429)
                      ..|.||||+|..+-+.++|+.|++.++|....       .|               .-|+.||-.|+.-++.++|++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            57999999999999999999999987663111       11               147889999999999999999999


Q ss_pred             CCCccccccccccCCCCcHHHHHHHc
Q 042589          195 REELGETIFWQVDNLGNSALHLAATY  220 (429)
Q Consensus       195 ~~~~~~~~in~~D~~G~TpLHlAa~~  220 (429)
                      +++    ++|++|.+|||.||.-+..
T Consensus       262 ~gA----d~~aqDS~GNTVLH~lVi~  283 (782)
T KOG3676|consen  262 HGA----DPNAQDSNGNTVLHMLVIH  283 (782)
T ss_pred             cCC----CCCccccCCChHHHHHHHH
Confidence            999    9999999999999987765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.36  E-value=2.6e-07  Score=97.49  Aligned_cols=83  Identities=18%  Similarity=0.125  Sum_probs=75.5

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCC-CCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCC
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDP-GEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGN  211 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~-~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~  211 (429)
                      |..|..|+|+||+|+..|..++++.||+++.+. ..+|. .|+||||-|+..|+++++-.|+++|.    .+..+|++|.
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~----SL~i~Dkegl  120 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGR----SLRIKDKEGL  120 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCC----ceEEecccCC
Confidence            567889999999999999999999999997775 45564 89999999999999999999999997    8889999999


Q ss_pred             cHHHHHHHc
Q 042589          212 SALHLAATY  220 (429)
Q Consensus       212 TpLHlAa~~  220 (429)
                      .||..-++-
T Consensus       121 splq~~~r~  129 (1267)
T KOG0783|consen  121 SPLQFLSRV  129 (1267)
T ss_pred             CHHHHHhhc
Confidence            999998874

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.35  E-value=2.1e-07  Score=100.71  Aligned_cols=138  Identities=20%  Similarity=0.093  Sum_probs=108.5

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .|++.+|+.+|++++ ..|..|-+|++.+...++..+..+ ++..-.+.   +.+.|+.+.|+|-+||..|..++|+.||
T Consensus       770 ~e~vellv~rganie-hrdkkgf~plImaatagh~tvV~~-llk~ha~v---eaQsdrtkdt~lSlacsggr~~vvelLl  844 (2131)
T KOG4369|consen  770 REEVELLVVRGANIE-HRDKKGFVPLIMAATAGHITVVQD-LLKAHADV---EAQSDRTKDTMLSLACSGGRTRVVELLL  844 (2131)
T ss_pred             HHHHHHHHHhccccc-ccccccchhhhhhcccCchHHHHH-HHhhhhhh---hhhcccccCceEEEecCCCcchHHHHHH
Confidence            488999999999998 467779999998888776654322 11111111   2456778999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccc--cCCCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQV--DNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~--D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      .++... +-++....|||.+|...|..++++.|+..|+    .+|.+  .+.|-.||.+|+..||....+
T Consensus       845 ~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~Gs----eInSrtgSklgisPLmlatmngh~~at~  909 (2131)
T KOG4369|consen  845 NAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGS----EINSRTGSKLGISPLMLATMNGHQAATL  909 (2131)
T ss_pred             Hhhccc-cccchhhcCchhhhcCcchHHHHHHHhhccc----ccccccccccCcchhhhhhhccccHHHH
Confidence            886554 5677888999999999999999999999987    55554  578999999999999977655

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.33  E-value=4.5e-07  Score=92.06  Aligned_cols=89  Identities=26%  Similarity=0.206  Sum_probs=79.1

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCC-ccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCC
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPV-AIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGN  211 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~-~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~  211 (429)
                      ..++.+-.|-||+|++.|+-|+|++||+++|. ..+..|..|+|+||-|+..++-.+.++|++.|+    .+...|..|.
T Consensus       893 l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdaga----sl~ktd~kg~  968 (1004)
T KOG0782|consen  893 LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGA----SLRKTDSKGK  968 (1004)
T ss_pred             EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcch----hheecccCCC
Confidence            34567789999999999999999999999864 456678899999999999999999999999998    7889999999


Q ss_pred             cHHHHHHHcCCCcc
Q 042589          212 SALHLAATYGDHRP  225 (429)
Q Consensus       212 TpLHlAa~~g~~~~  225 (429)
                      ||-.-|-+.|+.++
T Consensus       969 tp~eraqqa~d~dl  982 (1004)
T KOG0782|consen  969 TPQERAQQAGDPDL  982 (1004)
T ss_pred             ChHHHHHhcCCchH
Confidence            99999999998654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.33  E-value=6.2e-07  Score=56.64  Aligned_cols=27  Identities=33%  Similarity=0.389  Sum_probs=18.5

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhCCC
Q 042589          138 RKETPILVAAKMGVTEMVKKILDTFPV  164 (429)
Q Consensus       138 ~G~TpLh~Aa~~G~~eiv~~Ll~~~~~  164 (429)
                      +|+||||+||+.|+.|+|++||+++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            367777777777777777777766544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.26  E-value=1.2e-06  Score=56.57  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=12.2

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhC
Q 042589          139 KETPILVAAKMGVTEMVKKILDTF  162 (429)
Q Consensus       139 G~TpLh~Aa~~G~~eiv~~Ll~~~  162 (429)
                      |+||||+||++|+.++++.|++++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~g   25 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHG   25 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCc
Confidence            455555555555555555555443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.25  E-value=1.2e-06  Score=55.35  Aligned_cols=29  Identities=17%  Similarity=0.090  Sum_probs=26.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHcCCCccccccc
Q 042589          172 GEKNVLLLAIENRQTHVYNLLRSREELGETIFW  204 (429)
Q Consensus       172 ~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in  204 (429)
                      +|+||||+|+.+|+.+++++|++.|+    ++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~ga----dvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGA----DVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCC----CCC
Confidence            59999999999999999999999987    665

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.24  E-value=1.1e-06  Score=89.12  Aligned_cols=82  Identities=22%  Similarity=0.182  Sum_probs=65.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHHh-CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHH
Q 042589          141 TPILVAAKMGVTEMVKKILDT-FPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAAT  219 (429)
Q Consensus       141 TpLh~Aa~~G~~eiv~~Ll~~-~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~  219 (429)
                      -|+|+++.....+-.+..+.. ....++.+|..|+||||+|+.-||.+.++.|+..++    ++..+|++|++|||.|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~A----dv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGA----DVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCC----CccccccccccHHHHHHH
Confidence            458888888777665554433 344567788889999999999999999999998888    888899999999999999


Q ss_pred             cCCCccc
Q 042589          220 YGDHRPW  226 (429)
Q Consensus       220 ~g~~~~~  226 (429)
                      .|+.+++
T Consensus        98 ~g~~q~i  104 (560)
T KOG0522|consen   98 TGNEQII  104 (560)
T ss_pred             cCCHHHH
Confidence            9986544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.18  E-value=4e-06  Score=79.25  Aligned_cols=77  Identities=12%  Similarity=0.172  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      .+++++.|++.|+|+|                                      ..++..+.||||.||.+|+.++.+.|
T Consensus        57 nl~~v~lll~~gaDvN--------------------------------------~~qhg~~YTpLmFAALSGn~dvcrll   98 (396)
T KOG1710|consen   57 NLTLVELLLELGADVN--------------------------------------DKQHGTLYTPLMFAALSGNQDVCRLL   98 (396)
T ss_pred             cHHHHHHHHHhCCCcC--------------------------------------cccccccccHHHHHHHcCCchHHHHH
Confidence            3688999999999999                                      44566799999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRS  194 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~  194 (429)
                      ++.+.. ....++-|+|+-.+|+.-||.++|..+-.
T Consensus        99 ldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   99 LDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HhccCc-cccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            998654 46678999999999999999999986643

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.17  E-value=2.7e-06  Score=54.85  Aligned_cols=33  Identities=18%  Similarity=0.140  Sum_probs=30.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccC
Q 042589          172 GEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDN  208 (429)
Q Consensus       172 ~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~  208 (429)
                      +|+||||+|+..|+.+++++|++.|+    +++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga----~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGA----DINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTS----CTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcC----CCCCCCC
Confidence            58999999999999999999999998    8888874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.10  E-value=7e-06  Score=83.92  Aligned_cols=64  Identities=13%  Similarity=0.070  Sum_probs=56.4

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREE  197 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~  197 (429)
                      ...+.+|+|+||+||+.|++.+.++|+-++.+ ...+|.+|+|+|.+|-+.|..++++.|+..|.
T Consensus       655 t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  655 TCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             cccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence            33456799999999999999999999977666 46789999999999999999999999998875

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.06  E-value=2.8e-06  Score=92.29  Aligned_cols=138  Identities=17%  Similarity=0.049  Sum_probs=103.2

Q ss_pred             HHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 042589           81 QVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILD  160 (429)
Q Consensus        81 ~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~  160 (429)
                      +++.+||...++++ ..-..|-|||+.....+..++.++ |+-.+.+..--  -.-....|+|-++|..||...|..|+.
T Consensus       940 evv~lLLa~~anve-hRaktgltplme~AsgGyvdvg~~-li~~gad~nas--Pvp~T~dtalti~a~kGh~kfv~~lln 1015 (2131)
T KOG4369|consen  940 EVVFLLLAAQANVE-HRAKTGLTPLMEMASGGYVDVGNL-LIAAGADTNAS--PVPNTWDTALTIPANKGHTKFVPKLLN 1015 (2131)
T ss_pred             hHHHHHHHHhhhhh-hhcccCCcccchhhcCCccccchh-hhhcccccccC--CCCCcCCccceeecCCCchhhhHHhhC
Confidence            77777887777777 234458888887766565555544 22333332211  112235678888888899888888886


Q ss_pred             hCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          161 TFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       161 ~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ... ....++++|.|+|-+|+..|+...+..|++.++    +.+..|+.-+|++.-|.+.||.++|+
T Consensus      1016 ~~a-tv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~a----d~d~qdnr~~S~~maafRKgh~~iVk 1077 (2131)
T KOG4369|consen 1016 GDA-TVRVPNKKGCTVLWLASAGGALSSCPILVSSVA----DADQQDNRTNSRTMAAFRKGHFAIVK 1077 (2131)
T ss_pred             Ccc-ceecccCCCCcccchhccCCccccchHHhhccc----ChhhhhcccccccHHHHHhchhheec
Confidence            543 357789999999999999999999999999988    89999999999999999999988876

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.04  E-value=1.1e-05  Score=81.21  Aligned_cols=80  Identities=18%  Similarity=0.071  Sum_probs=71.9

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcC
Q 042589          142 PILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYG  221 (429)
Q Consensus       142 pLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g  221 (429)
                      -||-.++.|+.|+.--||..+++....--..|.||||+|++.|+..=+++|+-.|+    ++++.|.+|.||+.+|-..|
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGA----D~~a~d~~GmtP~~~AR~~g  211 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGA----DPGAQDSSGMTPVDYARQGG  211 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccC----CCCCCCCCCCcHHHHHHhcC
Confidence            49999999999999999988877644445699999999999999999999999999    99999999999999999999


Q ss_pred             CCcc
Q 042589          222 DHRP  225 (429)
Q Consensus       222 ~~~~  225 (429)
                      |.++
T Consensus       212 H~~l  215 (669)
T KOG0818|consen  212 HHEL  215 (669)
T ss_pred             chHH
Confidence            9654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.87  E-value=5.1e-05  Score=76.49  Aligned_cols=57  Identities=18%  Similarity=0.047  Sum_probs=50.0

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHc
Q 042589          137 RRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRS  194 (429)
Q Consensus       137 ~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~  194 (429)
                      +.|.||||+||+.|+..-++.|+-.++| +...|.+|.||+.+|-..||.++.+.|++
T Consensus       165 ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  165 EKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             ccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            4699999999999999999999866665 57889999999999999999988776664

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.85  E-value=1.3e-05  Score=80.25  Aligned_cols=64  Identities=25%  Similarity=0.191  Sum_probs=58.2

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCC
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSRE  196 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~  196 (429)
                      +..|.+.+|+||+||..|+++++++|++.+....+.+|..|+|||.-|...+|.+++++|-+..
T Consensus       533 ~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  533 ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            4567889999999999999999999999987777888999999999999999999999997653

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.80  E-value=1.4e-05  Score=87.31  Aligned_cols=87  Identities=20%  Similarity=0.069  Sum_probs=78.4

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHH
Q 042589          136 SRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALH  215 (429)
Q Consensus       136 d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLH  215 (429)
                      -..|.|+||.|+..|..-+++.|++.+.+ ++..|..|+||||.+...|+...+..++++++    +.++.|.+|.+||+
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a----~~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGA----DPNAFDPDGKLPLD  727 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccccc----cccccCccCcchhh
Confidence            35689999999999999999999988766 78999999999999999999999999999998    89999999999999


Q ss_pred             HHHHcCCCcccc
Q 042589          216 LAATYGDHRPWH  227 (429)
Q Consensus       216 lAa~~g~~~~~~  227 (429)
                      .|....+.+++.
T Consensus       728 ~a~~~~~~d~~~  739 (785)
T KOG0521|consen  728 IAMEAANADIVL  739 (785)
T ss_pred             HHhhhccccHHH
Confidence            998876655443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.72  E-value=6e-05  Score=76.83  Aligned_cols=62  Identities=16%  Similarity=0.157  Sum_probs=54.8

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcC
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSR  195 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~  195 (429)
                      +.+|..|+||||+|+..|+.+.++.|+..+++. ..+|.+|+++||-|+..|+..++..++.+
T Consensus        49 d~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   49 DRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            567788999999999999999999999987764 67899999999999999999887766643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.57  E-value=0.00036  Score=71.73  Aligned_cols=82  Identities=17%  Similarity=0.026  Sum_probs=67.9

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCC---ccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHH
Q 042589          142 PILVAAKMGVTEMVKKILDTFPV---AIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAA  218 (429)
Q Consensus       142 pLh~Aa~~G~~eiv~~Ll~~~~~---~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa  218 (429)
                      -|.-|.....+..+-.||.++..   .-...+.+|+|+||+|+..|+..+.++|+-.+.    ++-.+|.+|+|+|.+|-
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~----dv~~rda~g~t~l~yar  702 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGV----DVMARDAHGRTALFYAR  702 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCc----cceecccCCchhhhhHh
Confidence            36678888888888888877521   112236689999999999999999999998888    89999999999999999


Q ss_pred             HcCCCcccc
Q 042589          219 TYGDHRPWH  227 (429)
Q Consensus       219 ~~g~~~~~~  227 (429)
                      +.|..++++
T Consensus       703 ~a~sqec~d  711 (749)
T KOG0705|consen  703 QAGSQECID  711 (749)
T ss_pred             hcccHHHHH
Confidence            999877665

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.53  E-value=0.00017  Score=64.65  Aligned_cols=64  Identities=19%  Similarity=0.082  Sum_probs=59.6

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCC
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSRE  196 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~  196 (429)
                      |.+|..||||++.||..|..+.+.+|+.++...+...|..|.+++.+|-++|+.+++..|.+..
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            7788999999999999999999999999986777889999999999999999999999998764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.44  E-value=0.00024  Score=75.83  Aligned_cols=79  Identities=13%  Similarity=0.002  Sum_probs=61.5

Q ss_pred             hHhHHHhhhhchhH----HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCc
Q 042589           66 IKNVREKKETHTWA----IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKET  141 (429)
Q Consensus        66 i~~i~~~k~~h~~a----~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~T  141 (429)
                      |++..+....|..+    -++++.|+++|.+++  .                                    +-.+.|+|
T Consensus        47 ikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~--v------------------------------------qD~ESG~t   88 (1267)
T KOG0783|consen   47 IKDRYGRTALHIAVSENKNSFLRWLLQHGIDVF--V------------------------------------QDEESGYT   88 (1267)
T ss_pred             HHHhhccceeeeeeccchhHHHHHHHhcCceee--e------------------------------------ccccccch
Confidence            44444444455433    488999999999998  1                                    12257999


Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHc
Q 042589          142 PILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIEN  183 (429)
Q Consensus       142 pLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~  183 (429)
                      |||.|..+|+.+++..||+++.. ....|++|..||..-++-
T Consensus        89 aLHRaiyyG~idca~lLL~~g~S-L~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen   89 ALHRAIYYGNIDCASLLLSKGRS-LRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             HhhHhhhhchHHHHHHHHhcCCc-eEEecccCCCHHHHHhhc
Confidence            99999999999999999988644 588999999999887763

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.27  E-value=0.00016  Score=79.22  Aligned_cols=86  Identities=17%  Similarity=0.100  Sum_probs=59.4

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHH
Q 042589          138 RKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLA  217 (429)
Q Consensus       138 ~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlA  217 (429)
                      .|+|-+|+++..|+..+++.+++-........|.+|...+|. |..++.+..-+++.....   .++.+|.+|+||||||
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~---ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGV---AIDIRDRNGWTPLHWA  648 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeeccc---ccccccCCCCcccchH
Confidence            688888888888888888888874111123357777788888 445555555555544332   7788888888888888


Q ss_pred             HHcCCCcccc
Q 042589          218 ATYGDHRPWH  227 (429)
Q Consensus       218 a~~g~~~~~~  227 (429)
                      +..|+.+++.
T Consensus       649 a~~G~e~l~a  658 (975)
T KOG0520|consen  649 AFRGREKLVA  658 (975)
T ss_pred             hhcCHHHHHH
Confidence            8888866554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.82  E-value=0.0026  Score=62.62  Aligned_cols=58  Identities=21%  Similarity=0.210  Sum_probs=52.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCc
Q 042589          140 ETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREEL  198 (429)
Q Consensus       140 ~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~  198 (429)
                      .--|..||+.|.++.|+.|++. +..++.+|....+||.+|+..||.++|++|+++|+.
T Consensus        37 f~elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            4458899999999999999985 455789999999999999999999999999999984

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=96.77  E-value=0.0017  Score=66.70  Aligned_cols=82  Identities=16%  Similarity=0.080  Sum_probs=64.2

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCC
Q 042589          143 ILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGD  222 (429)
Q Consensus       143 Lh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  222 (429)
                      |..|+..+..--++..-..+++. ..++.+.++.||+|+..|+.++|+|++.++..  ..+++.|..|.|+||-|+..++
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~--elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS--ELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCH--HHHHHHhhhhhHHHHHHHHhcc
Confidence            55677766654444444445554 56789999999999999999999999999862  4789999999999999999988


Q ss_pred             Ccccc
Q 042589          223 HRPWH  227 (429)
Q Consensus       223 ~~~~~  227 (429)
                      -.+..
T Consensus       947 r~vc~  951 (1004)
T KOG0782|consen  947 RAVCQ  951 (1004)
T ss_pred             hHHHH
Confidence            54443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.61  E-value=0.0023  Score=70.33  Aligned_cols=90  Identities=18%  Similarity=-0.083  Sum_probs=63.6

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccc--cccccccCCCCc
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGE--TIFWQVDNLGNS  212 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~--~~in~~D~~G~T  212 (429)
                      .|.+|.--+|. |..|+.+.+-+++...+..++.+|.+||||||+|+..|+..++..|++.++...  .+.+..+..|.|
T Consensus       604 ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~t  682 (975)
T KOG0520|consen  604 LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKT  682 (975)
T ss_pred             hcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCc
Confidence            44556666677 555666777677766677778888888888888888888888888886654221  133445567888


Q ss_pred             HHHHHHHcCCCcc
Q 042589          213 ALHLAATYGDHRP  225 (429)
Q Consensus       213 pLHlAa~~g~~~~  225 (429)
                      +-.+|...|+..+
T Consensus       683 a~~la~s~g~~gi  695 (975)
T KOG0520|consen  683 AADLARANGHKGI  695 (975)
T ss_pred             hhhhhhcccccch
Confidence            8888888777543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=96.44  E-value=0.003  Score=56.79  Aligned_cols=61  Identities=20%  Similarity=0.080  Sum_probs=54.9

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          165 AIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       165 ~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      .++.+|..|+|+|..|+..|+.+.+.||+.+|.   ..+-..|..|++++.+|-+.|+...++.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~---a~vgv~d~ssldaaqlaek~g~~~fvh~   64 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGV---AFVGVTDESSLDAAQLAEKGGAQAFVHS   64 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCc---ccccccccccchHHHHHHhcChHHHHHH
Confidence            367889999999999999999999999999994   2899999999999999999999776653

>smart00248 ANK ankyrin repeats

Probab=96.15  E-value=0.0084  Score=35.19  Aligned_cols=25  Identities=40%  Similarity=0.473  Sum_probs=18.9

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhCC
Q 042589          139 KETPILVAAKMGVTEMVKKILDTFP  163 (429)
Q Consensus       139 G~TpLh~Aa~~G~~eiv~~Ll~~~~  163 (429)
                      |.||+|+|+..|+.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            6778888888888888887776654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.12  E-value=0.0031  Score=67.99  Aligned_cols=88  Identities=19%  Similarity=0.066  Sum_probs=68.5

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccc------ccccc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGET------IFWQV  206 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~------~in~~  206 (429)
                      |..|.-|+++||+|..+-|.|+++.|+++.-..        ..+|.+|+..|..++|+.++........      .-...
T Consensus        56 nc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~  127 (822)
T KOG3609|consen   56 NCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPH  127 (822)
T ss_pred             hccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCccc
Confidence            667788999999999999999999999773221        6789999999999999999977432100      11123


Q ss_pred             cCCCCcHHHHHHHcCCCccccc
Q 042589          207 DNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       207 D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      -..+-|||.+||...+++++++
T Consensus       128 ft~ditPliLAAh~NnyEil~~  149 (822)
T KOG3609|consen  128 FTPDITPLMLAAHLNNFEILQC  149 (822)
T ss_pred             CCCCccHHHHHHHhcchHHHHH
Confidence            3466899999999999998773

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.42  E-value=0.03  Score=55.41  Aligned_cols=48  Identities=19%  Similarity=0.243  Sum_probs=35.1

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCC-CCCcHHHHHHHcCC
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDP-GEKNVLLLAIENRQ  185 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~-~G~t~LH~A~~~g~  185 (429)
                      .|.-..+||.+|+-.||.++|+.|++.++-+ . +|. +|.. -|+++.+.+
T Consensus        65 vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~-rdtf~G~R-C~YgaLnd~  113 (516)
T KOG0511|consen   65 VDRFDSSPLYLASLCGHEDVVKLLLENGAIC-S-RDTFDGDR-CHYGALNDR  113 (516)
T ss_pred             hhcccccHHHHHHHcCcHHHHHHHHHcCCcc-c-ccccCcch-hhhhhhhHH
Confidence            4455789999999999999999999987654 3 344 5554 456666544

>smart00248 ANK ankyrin repeats

Probab=95.34  E-value=0.028  Score=32.81  Aligned_cols=26  Identities=31%  Similarity=0.333  Sum_probs=23.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHcCCC
Q 042589          172 GEKNVLLLAIENRQTHVYNLLRSREE  197 (429)
Q Consensus       172 ~G~t~LH~A~~~g~~~iv~~Ll~~~~  197 (429)
                      +|.||+|+|+..++.+++++|++.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47899999999999999999998775

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.04  E-value=2.1  Score=46.96  Aligned_cols=86  Identities=20%  Similarity=0.167  Sum_probs=59.4

Q ss_pred             CCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCc---------cccCC
Q 042589          100 NGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVA---------IWDLD  170 (429)
Q Consensus       100 ~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~---------~~~~d  170 (429)
                      -|++.++.++.+++-++  ++++.+..         .+. ..+|..|...|.+++|+.++.+....         ....-
T Consensus        61 lGr~al~iai~nenle~--~eLLl~~~---------~~~-gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~f  128 (822)
T KOG3609|consen   61 LGRLALHIAIDNENLEL--QELLLDTS---------SEE-GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHF  128 (822)
T ss_pred             HhhhceecccccccHHH--HHHHhcCc---------ccc-chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccC
Confidence            37777777765444333  23333211         112 55788999999999999999773221         01123


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 042589          171 PGEKNVLLLAIENRQTHVYNLLRSREE  197 (429)
Q Consensus       171 ~~G~t~LH~A~~~g~~~iv~~Ll~~~~  197 (429)
                      .-+-|||.+||..++.||+++|+.+|+
T Consensus       129 t~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen  129 TPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             CCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            467899999999999999999999886

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.89  E-value=0.038  Score=56.48  Aligned_cols=44  Identities=20%  Similarity=0.035  Sum_probs=37.0

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHH
Q 042589          137 RRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAI  181 (429)
Q Consensus       137 ~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~  181 (429)
                      ....|+||+|+..|..++|.+||+.+-| ....|..|+||..++.
T Consensus       428 ~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  428 YLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            4568999999999999999999988744 4567999999998877

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=94.59  E-value=0.031  Score=61.63  Aligned_cols=100  Identities=18%  Similarity=0.094  Sum_probs=70.1

Q ss_pred             hCCCCCCc-ccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcc
Q 042589           88 DDRNPHVY-KYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAI  166 (429)
Q Consensus        88 ~~~a~~~~-~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~  166 (429)
                      .++.+.|. +....|++++|.+.+......  .+++......   .|..|..|+||+|.+...|+...+..+++++.+ .
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~--~e~ll~~ga~---vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~  715 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGA--VELLLQNGAD---VNALDSKGRTPLHHATASGHTSIACLLLKRGAD-P  715 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHH--HHHHHhcCCc---chhhhccCCCcchhhhhhcccchhhhhcccccc-c
Confidence            44444441 123358899998876332222  2333333222   367889999999999999999999999987655 4


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 042589          167 WDLDPGEKNVLLLAIENRQTHVYNLLR  193 (429)
Q Consensus       167 ~~~d~~G~t~LH~A~~~g~~~iv~~Ll  193 (429)
                      +..|.+|.++|++|....+.+++-++.
T Consensus       716 ~a~~~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  716 NAFDPDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             cccCccCcchhhHHhhhccccHHHHHh
Confidence            778999999999998887777766554

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.37  E-value=0.094  Score=53.73  Aligned_cols=63  Identities=11%  Similarity=0.019  Sum_probs=49.2

Q ss_pred             HHHHHHHHHhCCCc-----cccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHH
Q 042589          152 TEMVKKILDTFPVA-----IWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAA  218 (429)
Q Consensus       152 ~eiv~~Ll~~~~~~-----~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa  218 (429)
                      ...+++|.++.-+.     .+..|.---|+||+|+..|..++|.++++.+.    +...+|..|.||..+++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~----Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGC----DPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcC----CchhcccCCCCcccccc
Confidence            45566666553221     12234456799999999999999999999997    89999999999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	429
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 7e-11
 Identities = 67/378 (17%), Positives = 124/378 (32%), Gaps = 86/378 (22%)

Query: 24  DRKEDQLFPSDYVKCFLKGII-DL----VQEIELNVIWYAIYAGIRGIKNVREKKETHTW 78
           +  E Q    D +  F    + +     VQ++  +++       I   K+          
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG------ 63

Query: 79  AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRR 138
            +++F  L+  +   V K+V          +   ++     +  P   T +    +R R 
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPIKTEQRQPSMMT-RMYIEQRDRL 119

Query: 139 KETPILVAAKMGVT--EMVKKILDTFPVAIWDLDPGEKNVLL----------LAIENRQT 186
                + A K  V+  +   K+      A+ +L P  KNVL+          +A++    
Sbjct: 120 YNDNQVFA-KYNVSRLQPYLKLRQ----ALLELRP-AKNVLIDGVLGSGKTWVALD---- 169

Query: 187 HVYNLLRSREELGETIFWQVDNLGN------------SALHLAATYGDHRPWHTLGAALQ 234
            V    + + ++   IFW   NL N              L+        R  H+    L+
Sbjct: 170 -VCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 235 MHWEISWFQ-FVKATTKQAHRAL-----VQEGREWLTKT-SESCSVLAAFIATVAFATSA 287
           +H   +  +  +K  +K     L     VQ  + W     + SC +L   + T       
Sbjct: 227 IHSIQAELRRLLK--SKPYENCLLVLLNVQNAKAW--NAFNLSCKIL---LTT----RFK 275

Query: 288 AVPGGVDQGSGKPILENKPVFNIFAISSLIALSSSVTVLIIFLKILTFRYQENDFVMALP 347
            V    D       L      +I      + L+       + LK L  R Q+      LP
Sbjct: 276 QV---TD------FLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQD------LP 319

Query: 348 RELLLGLTMLITSIVAIL 365
           RE+L      ++ I   +
Sbjct: 320 REVLTTNPRRLSIIAESI 337

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 43/311 (13%), Positives = 76/311 (24%), Gaps = 124/311 (39%)

Query: 3   EADDEENPQPKSSTPQDK-SKKDRKEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYA 61
           + +        S+      S +      L    Y  C L  ++        NV       
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLL-------NV-Q----- 254

Query: 62  GIRGIKNVREKKETHTWAIQVFDE----LVDDRNPHVYKYVYNGREPRISTFGQDVNAFT 117
                         +  A   F+     L+  R   V  ++       IS         T
Sbjct: 255 --------------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLT 299

Query: 118 ARET-----------PPD-PNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVA 165
             E            P D P      N         P  ++    + E ++  L T    
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTN---------PRRLS---IIAESIRDGLAT---- 343

Query: 166 IWD--------------------LDPGE--KNVLLLAIENRQTHV-YNLLRSREELGETI 202
            WD                    L+P E  K    L++     H+   LL        ++
Sbjct: 344 -WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL--------SL 394

Query: 203 FWQ----------VDNLGNSALHLA-----ATYGDHRPWHTLGAALQMHWEISWFQFVKA 247
            W           V+ L   +L +      +T            ++ +  ++        
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIP--------SIYLELKVK-----LE 440

Query: 248 TTKQAHRALVQ 258
                HR++V 
Sbjct: 441 NEYALHRSIVD 451

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	429
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.89
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.85
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.84
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.83
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.82
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.81
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.81
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.81
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.81
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.8
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.8
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.8
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.8
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.8
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.8
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.79
2rfa_A	232	Transient receptor potential cation channel subfa	99.79
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.79
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.78
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.78
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.78
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.78
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.78
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.78
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.78
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.78
2rfa_A	232	Transient receptor potential cation channel subfa	99.77
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.77
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.77
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.77
2etb_A	256	Transient receptor potential cation channel subfam	99.76
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.76
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.76
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.76
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.76
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.76
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.75
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.75
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.75
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.75
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.75
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.75
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.74
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.74
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.74
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.74
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.74
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.74
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.74
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.74
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.74
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.74
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.74
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.74
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.74
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.73
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.73
2pnn_A	273	Transient receptor potential cation channel subfa	99.73
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.73
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.72
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.72
2etb_A	256	Transient receptor potential cation channel subfam	99.71
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.71
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.71
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.7
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.69
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.69
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.69
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.69
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.69
2pnn_A	273	Transient receptor potential cation channel subfa	99.68
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.68
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.68
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.67
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.67
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.67
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.66
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.66
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.66
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.65
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.65
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.65
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.65
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.65
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.65
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.65
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.64
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.64
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.63
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.63
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.63
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.63
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.63
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.62
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.62
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.6
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.6
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.59
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.58
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.57
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.57
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.55
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.55
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.53
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.53
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.48
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.48
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.47
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.42
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.37
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.37
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.36
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.23

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.89  E-value=1.7e-23  Score=187.22  Aligned_cols=138  Identities=20%  Similarity=0.168  Sum_probs=115.6

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      +++|+.|+++|+++| ..|..|+||+|.+.......... .+++.+.+    .+.+|.+|+||||+||+.|+.++|+.|+
T Consensus        17 ~~~v~~Ll~~Gadvn-~~d~~g~t~l~~a~~~~~~~~~~-~ll~~gad----~~~~d~~g~TpLh~A~~~g~~~~v~~Ll   90 (169)
T 4gpm_A           17 KDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVK-LLISKGAD----VNAKDSDGRTPLHHAAENGHKEVVKLLI   90 (169)
T ss_dssp             HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHH-HHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHH-HHHhcccc----hhhhccCCCCHHHHHHHcCCHHHHHHHH
Confidence            567799999999999 46677999999887644433321 12222222    2567889999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      +++.+ ++.+|.+|+||||+|+.+|+.+++++|++.|+    +++.+|.+|+||||+|+..|+.+++++
T Consensus        91 ~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~G~TpL~~A~~~g~~~iv~~  154 (169)
T 4gpm_A           91 SKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGA----DVNTSDSDGRTPLDLAREHGNEEVVKL  154 (169)
T ss_dssp             HTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            98766 57889999999999999999999999999998    899999999999999999999887764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.85  E-value=6e-21  Score=181.36  Aligned_cols=186  Identities=12%  Similarity=-0.032  Sum_probs=133.4

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchh----HHHHHHHHHhCCCCCCcccccCCCCcc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTW----AIQVFDELVDDRNPHVYKYVYNGREPR  105 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~----a~~iv~~Ll~~~a~~~~~~d~~G~~P~  105 (429)
                      ...|++.+|.. |..+.++.++ +......   .....+-.+....|..    ..+++++|+++|++++ ..+..|+||+
T Consensus         9 g~t~L~~A~~~-g~~~~v~~Ll-~~g~~~~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL   82 (282)
T 1oy3_D            9 GDTALHLAVIH-QHEPFLDFLL-GFSAGHE---YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHTAL   82 (282)
T ss_dssp             CCCHHHHHHHT-TCHHHHHHHH-HHHTTSG---GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCCHH
T ss_pred             CCcHHHHHHHc-CCHHHHHHHH-hcCCCcc---cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHH
Confidence            45688888887 8888774333 2211100   0001111111222222    3689999999999999 4566799999


Q ss_pred             cccccCCccccccccCCCC-CCC-------------------------------------------cccccccCCCCCCc
Q 042589          106 ISTFGQDVNAFTARETPPD-PNT-------------------------------------------YKKKNARRSRRKET  141 (429)
Q Consensus       106 ~~~~~~~~~~~~~i~ll~~-~~~-------------------------------------------~~~~~~~~d~~G~T  141 (429)
                      |.++..+..++  ++.+.+ +..                                           .....+..+..|.|
T Consensus        83 ~~A~~~~~~~~--v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           83 HLACRVRAHTC--ACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHTTTTCHHH--HHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHcCCcch--hHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            98876443322  222221 111                                           01124667889999


Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCCccccCCC-CCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHc
Q 042589          142 PILVAAKMGVTEMVKKILDTFPVAIWDLDP-GEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATY  220 (429)
Q Consensus       142 pLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~-~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~  220 (429)
                      |||+|++.|+.+++++|++++.+. +..|. .|+||||+|+..|+.+++++|++.|+    ++|.+|.+|+||||+|+..
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGA----DPTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHTS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC----CCcccccCCCCHHHHHHHc
Confidence            999999999999999999998775 55554 59999999999999999999999998    8999999999999999999


Q ss_pred             CCCccccc
Q 042589          221 GDHRPWHT  228 (429)
Q Consensus       221 g~~~~~~~  228 (429)
                      |+.+++++
T Consensus       236 ~~~~~v~~  243 (282)
T 1oy3_D          236 PNPILARL  243 (282)
T ss_dssp             SCHHHHHH
T ss_pred             CCcHHHHH
Confidence            99887764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.84  E-value=1.1e-21  Score=177.71  Aligned_cols=186  Identities=16%  Similarity=0.028  Sum_probs=134.4

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTF  109 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~  109 (429)
                      ...|++.+|.+ |+.+.+++++.+...........+...++-....  ...+++++|+++|++++ ..+..|.||+|.+.
T Consensus         5 ~~~~L~~A~~~-g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~   80 (201)
T 3hra_A            5 EVGALLEAANQ-RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN--NDIEIAKALIDRGADIN-LQNSISDSPYLYAG   80 (201)
T ss_dssp             CTTHHHHHHHT-TCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             cccHHHHHHHh-ccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH
Confidence            45678888888 8888875544111101111111111111111111  13789999999999999 45566999999887


Q ss_pred             cCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCC----
Q 042589          110 GQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQ----  185 (429)
Q Consensus       110 ~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~----  185 (429)
                      ..+..++  ++.+.+....  ..+..|..|.||||+|+..|+.++++.|+++++..++.+|..|+||||+|+..++    
T Consensus        81 ~~~~~~~--~~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~  156 (201)
T 3hra_A           81 AQGRTEI--LAYMLKHATP--DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL  156 (201)
T ss_dssp             HTTCHHH--HHHHHHHSCC--CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred             HcCCHHH--HHHHHhccCc--ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhh
Confidence            6443322  3333311111  1256778899999999999999999999999866678899999999999999998    


Q ss_pred             -HHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          186 -THVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       186 -~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                       .+++++|++.|+    +++.+|.+|+||||+|+..|+.++++
T Consensus       157 ~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~~~~  195 (201)
T 3hra_A          157 YQDIVKLLMENGA----DQSIKDNSGRTAMDYANQKGYTEISK  195 (201)
T ss_dssp             HHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHCCC----CCCccCCCCCCHHHHHHHcCCHhHHH
Confidence             999999999998    89999999999999999999977654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.83  E-value=6.2e-21  Score=182.89  Aligned_cols=184  Identities=14%  Similarity=0.040  Sum_probs=108.6

Q ss_pred             CCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhh--HhHHHhhhhchh-----HHHHHHHHHhCCCCCCcccccCCCC
Q 042589           31 FPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGI--KNVREKKETHTW-----AIQVFDELVDDRNPHVYKYVYNGRE  103 (429)
Q Consensus        31 ~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i--~~i~~~k~~h~~-----a~~iv~~Ll~~~a~~~~~~d~~G~~  103 (429)
                      ..+++.||.+ |+++.++.+| +............+  .+.......|..     ..+++++|+++|+++| ..|.+|+|
T Consensus        12 ~~~L~~A~~~-G~~~~v~~LL-~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-~~d~~G~T   88 (269)
T 4b93_B           12 VEKLLRAVAD-GDLEMVRYLL-EWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-VTSQDGSS   88 (269)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHH-TCC----------------------------------------CCCCTT-CCCTTSCC
T ss_pred             hhHHHHHHHc-CCHHHHHHHH-HCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-CcCCCCCC
Confidence            4589999988 9999885544 11100000000000  000011111211     2357899999999999 45667999


Q ss_pred             cccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHc
Q 042589          104 PRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIEN  183 (429)
Q Consensus       104 P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~  183 (429)
                      |||.++..+..++  ++.|.+...   +.+..+.+|.||+|+|+..|+.++++.|++.+.+ ++.+|..|+||||+|+.+
T Consensus        89 pLh~A~~~g~~~~--v~~Ll~~~a---~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           89 PLHVAALHGRADL--IPLLLKHGA---NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             HHHHHHHTTCTTH--HHHHHHTTC---CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHcCcHHH--HHHHHhcCC---CcCccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHC
Confidence            9998876544333  333322111   1244566788888888888888888888877655 466777888888888888


Q ss_pred             CCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          184 RQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       184 g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |+.+++++|++.|+    ++|.+|.+|+||||+|+..|+.++++
T Consensus       163 g~~~~v~~Ll~~ga----dvn~~~~~g~t~Lh~A~~~g~~~~v~  202 (269)
T 4b93_B          163 GHHELVALLLQHGA----SINASNNKGNTALHEAVIEKHVFVVE  202 (269)
T ss_dssp             TCGGGHHHHHHTTC----CTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHCCC----CCCccccCCCcHHHHHHHcCCHHHHH
Confidence            88888888888777    77888888888888888888776665

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.82  E-value=1.1e-20  Score=164.38  Aligned_cols=136  Identities=16%  Similarity=0.136  Sum_probs=111.5

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|++++  .+..|.||+|.++..+..  +.++.+.+...   ..+.+|..|+||||+|+..|+.+++++|+
T Consensus        15 ~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   87 (153)
T 1awc_B           15 DDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHF--STTEVLLRAGV---SRDARTKVDRTPLHMAASEGHANIVEVLL   87 (153)
T ss_dssp             HHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCH--HHHHHHHTTTC---CTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCH--HHHHHHHHcCC---CCCCCCCCCCCHHHHHHHcChHHHHHHHH
Confidence            567788999999888  777899999988664432  22333332211   12556788999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +++.+ ++.+|..|+||||+|+.+|+.+++++|++.|+    +++.+|.+|+||||+|+..|+.++++
T Consensus        88 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~i~~  150 (153)
T 1awc_B           88 KHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGA----DVHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             TTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCCHHHHHHHcCCHHHHH
Confidence            88666 47789999999999999999999999999998    89999999999999999999976654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.81  E-value=2.9e-20  Score=162.64  Aligned_cols=137  Identities=15%  Similarity=0.063  Sum_probs=111.6

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|++++ ..+..|+||+|.+.. +  ..+.++.+.+...   ..+.+|..|.||||+|++.|+.++++.|+
T Consensus        18 ~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~--~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   90 (162)
T 1ihb_A           18 LEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-G--NPEIARRLLLRGA---NPDLKDRTGFAVIHDAARAGFLDTLQTLL   90 (162)
T ss_dssp             HHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-S--CHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcc-ccCccCccHHHHHHc-C--cHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            466789999999998 456679999998876 2  2333333332211   22557789999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +++.+ ++.+|..|+||||+|+..|+.+++++|++.++.   .++.+|.+|.||||+|+..|+.++++
T Consensus        91 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~t~l~~A~~~~~~~~~~  154 (162)
T 1ihb_A           91 EFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACDLARLYGRNEVVS  154 (162)
T ss_dssp             HTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC---CCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            98765 577899999999999999999999999999882   47999999999999999999977664

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.81  E-value=1.3e-20  Score=177.88  Aligned_cols=138  Identities=17%  Similarity=0.143  Sum_probs=72.2

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|++++ ..+..|+||+|.++..+..+  .++.+.+....+  .+..+..|.||||+|+..|+.++++.|+
T Consensus        70 ~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  144 (253)
T 1yyh_A           70 SDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQG--VFQILIRNRATD--LDARMHDGTTPLILAARLAVEGMLEDLI  144 (253)
T ss_dssp             HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHH--HHHHHHHSTTSC--TTCCCTTCCCHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHH--HHHHHHHcCCCC--ccccCCCCCcHHHHHHHcChHHHHHHHH
Confidence            455666666666665 23444666666554322211  122222111111  1334455666666666666666666666


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +.+.+ ++.+|..|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|+..|+.++++
T Consensus       145 ~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          145 NSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYETAK  207 (253)
T ss_dssp             HTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            55433 34455566666666666666666666666555    55556666666666666666555444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.81  E-value=3.2e-20  Score=172.44  Aligned_cols=186  Identities=17%  Similarity=0.052  Sum_probs=134.0

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhch----hHHHHHHHHHhCCCCCCcccccCCCCcc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHT----WAIQVFDELVDDRNPHVYKYVYNGREPR  105 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~----~a~~iv~~Ll~~~a~~~~~~d~~G~~P~  105 (429)
                      ...|++.+|.. |+.+.++.++ +.+. ..|.... ..+..+....|.    ...+++++|+++|++++ ..+..|+||+
T Consensus         9 g~t~L~~A~~~-g~~~~v~~Ll-~~~~-~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l   83 (241)
T 1k1a_A            9 GDTPLHIAVVQ-GNLPAVHRLV-NLFQ-QGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAA   83 (241)
T ss_dssp             TCCHHHHHHHT-TCHHHHHHHH-HHHH-HTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHH
T ss_pred             CCcHHHHHHHc-CCHHHHHHHH-HHHH-hcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHH
Confidence            45688888888 9998884443 2111 1111110 001111111221    13689999999999999 3566799999


Q ss_pred             cccccCCccccccccCC-CCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCC-CCCCcHHHHHHHc
Q 042589          106 ISTFGQDVNAFTARETP-PDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLD-PGEKNVLLLAIEN  183 (429)
Q Consensus       106 ~~~~~~~~~~~~~i~ll-~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d-~~G~t~LH~A~~~  183 (429)
                      |.++..+..+  .++.+ ..........+..|..|.||||+|+..|+.++++.|++.+.+. +..| ..|+||||+|+.+
T Consensus        84 ~~A~~~~~~~--~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~  160 (241)
T 1k1a_A           84 HLACEHRSPT--CLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVEN  160 (241)
T ss_dssp             HHHHHTTCHH--HHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHT
T ss_pred             HHHHHcCCHH--HHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHc
Confidence            9887644332  23222 2222222234667889999999999999999999999987765 5556 7899999999999


Q ss_pred             CCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          184 RQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       184 g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |+.+++++|++.|.    ++|.+|.+|+||||+|+..|+.++++
T Consensus       161 ~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~  200 (241)
T 1k1a_A          161 NSLSMVQLLLQHGA----NVNAQMYSGSSALHSASGRGLLPLVR  200 (241)
T ss_dssp             TCHHHHHHHHHTTC----CTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999998    89999999999999999999987765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.81  E-value=5.8e-20  Score=170.63  Aligned_cols=184  Identities=14%  Similarity=-0.016  Sum_probs=133.2

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTF  109 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~  109 (429)
                      ...|++.+|.. |+.+.++.++ +...........+...+......  ...+++++|+++|++++ ..+..|.||+|.++
T Consensus        11 g~t~L~~A~~~-g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~   85 (237)
T 3b7b_A           11 KRSPLHAAAEA-GHVDICHMLV-QAGANIDTCSEDQRTPLMEAAEN--NHLEAVKYLIKAGALVD-PKDAEGSTCLHLAA   85 (237)
T ss_dssp             SCCHHHHHHHH-TCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHTTTCCCC-CCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHc-CcHHHHHHHH-HcCCCcCccCCCCCCHHHHHHHh--CCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHH
Confidence            45688888887 8888773332 21111111111111111111111  13689999999999998 35667999999887


Q ss_pred             cCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHH
Q 042589          110 GQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVY  189 (429)
Q Consensus       110 ~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv  189 (429)
                      ..+..  +.++.+.+....+  .+..+..|.||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++
T Consensus        86 ~~~~~--~~~~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           86 KKGHY--EVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HTTCH--HHHHHHHTTTCCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HcCCH--HHHHHHHhCCCCC--cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHH
Confidence            64433  2333333322111  255677899999999999999999999998766 477899999999999999999999


Q ss_pred             HHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          190 NLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       190 ~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++|++.+.    +++.+|.+|+||||+|+..|+.++++
T Consensus       161 ~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~  194 (237)
T 3b7b_A          161 EILLAAKC----DLHAVNIHGDSPLHIAARENRYDCVV  194 (237)
T ss_dssp             HHHHTTTC----CTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCC----CCCCcCCCCCCHHHHHHHhCCHhHHH
Confidence            99999998    89999999999999999999987765

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.80  E-value=8.4e-20  Score=168.32  Aligned_cols=183  Identities=13%  Similarity=-0.035  Sum_probs=128.1

Q ss_pred             CchHHHHHHhhhHHHHHHHHHHHHHHHHh-cCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcc--cccCCCCccccc
Q 042589           32 PSDYVKCFLKGIIDLVQEIELNVIWYAIY-AGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYK--YVYNGREPRIST  108 (429)
Q Consensus        32 ~~~y~~c~~~g~~~~~~~~l~~~~~~~~~-~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~--~d~~G~~P~~~~  108 (429)
                      .|++.+|.. |+.+.++.++ +....... ....+...++-....  ...+++++|+++|++.+..  .+..|.||+|.+
T Consensus         4 t~L~~A~~~-g~~~~v~~Ll-~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            4 YPLHQACME-NEFFKVQELL-HSKPSLLLQKDQDGRIPLHWSVSF--QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             CHHHHHHHT-TCHHHHHHHH-HHCGGGTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             cHHHHHHHh-CCHHHHHHHH-hcCccccccCCCCCCCHHHHHHHc--CCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            367777777 8888874443 11100000 111111111111111  1368999999999555422  344699999988


Q ss_pred             ccCCccccccccCCCC-CCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHH
Q 042589          109 FGQDVNAFTARETPPD-PNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTH  187 (429)
Q Consensus       109 ~~~~~~~~~~i~ll~~-~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~  187 (429)
                      +..+.  .+.++.+.+ +...+  .+..+..|.||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+
T Consensus        80 ~~~~~--~~~~~~Ll~~g~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~  154 (228)
T 2dzn_A           80 CSVGN--LEVVKSLYDRPLKPD--LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLK  154 (228)
T ss_dssp             HHHCC--HHHHHHHHSSSSCCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHcCC--HHHHHHHHhCCCCcc--cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHH
Confidence            76443  233333332 21122  256678899999999999999999999998655 5778999999999999999999


Q ss_pred             HHHHHHcCC-CccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          188 VYNLLRSRE-ELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       188 iv~~Ll~~~-~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++++|++.+ .    ++|.+|.+|+||||+|+..|+.++++
T Consensus       155 ~v~~Ll~~g~~----~~~~~d~~g~t~L~~A~~~~~~~~v~  191 (228)
T 2dzn_A          155 LIELLCGLGKS----AVNWQDKQGWTPLFHALAEGHGDAAV  191 (228)
T ss_dssp             HHHHHHTTTCC----CSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhcCcc----cccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999999998 5    89999999999999999999977665

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.80  E-value=9.3e-20  Score=171.96  Aligned_cols=183  Identities=13%  Similarity=-0.006  Sum_probs=132.5

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCC-CCCcccccCCCCccccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRN-PHVYKYVYNGREPRIST  108 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a-~~~~~~d~~G~~P~~~~  108 (429)
                      ...|++.+|.. |+.+.++.++ +...+.......+...++-....  ...+++++|+++++ +++ ..+..|.||+|.+
T Consensus        57 g~t~L~~A~~~-g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~-~~~~~g~t~L~~A  131 (253)
T 1yyh_A           57 GETALHLAARY-SRSDAAKRLL-EASADANIQDNMGRTPLHAAVSA--DAQGVFQILIRNRATDLD-ARMHDGTTPLILA  131 (253)
T ss_dssp             SCCHHHHHHHT-TCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHSTTSCTT-CCCTTCCCHHHHH
T ss_pred             CCcHHHHHHHc-CCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCcc-ccCCCCCcHHHHH
Confidence            56788888887 8888773332 21111111111111111111111  13689999999998 777 3566799999988


Q ss_pred             ccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHH
Q 042589          109 FGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHV  188 (429)
Q Consensus       109 ~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~i  188 (429)
                      +..+..+  .++.|.+...   ..+.+|..|+||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+.+|+.++
T Consensus       132 ~~~~~~~--~v~~Ll~~g~---~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~  205 (253)
T 1yyh_A          132 ARLAVEG--MLEDLINSHA---DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYET  205 (253)
T ss_dssp             HHHTCSS--HHHHHHHTTC---CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHcChHH--HHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHH
Confidence            7644322  2333322211   1256778999999999999999999999998766 47789999999999999999999


Q ss_pred             HHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          189 YNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       189 v~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +++|++.|+    +++.+|..|+||||+|+..|+.+++.
T Consensus       206 v~~Ll~~ga----~~~~~d~~g~tpl~~A~~~g~~~i~~  240 (253)
T 1yyh_A          206 AKVLLDHFA----NRDITDHMDRLPRDIAQERMHHDIVR  240 (253)
T ss_dssp             HHHHHHTTC----CTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCC----CccccccCCCCHHHHHHHcCCHHHHH
Confidence            999999998    89999999999999999999977764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.80  E-value=1.2e-19  Score=160.68  Aligned_cols=137  Identities=15%  Similarity=0.054  Sum_probs=110.5

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|+++| ..|..|.||+|.++..+..  +.++.+.+...   ..+..|..|.||||+|+..|+.+++++|+
T Consensus        27 ~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  100 (169)
T 2y1l_E           27 DDEVRILMANGADVN-AEDASGWTPLHLAAFNGHL--EIVEVLLKNGA---DVNAVDHAGMTPLRLAALFGHLEIVEVLL  100 (169)
T ss_dssp             HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH--HHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCH--HHHHHHHHcCC---CCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            456688999999988 3556699999988764432  23333322211   12456788999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +++.+ ++..|..|+||||+|+..|+.+++++|++.++    +++.+|.+|.||||+|+..|+.++++
T Consensus       101 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~A~~~~~~~~~~  163 (169)
T 2y1l_E          101 KNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA----DVNAQDKFGKTAFDISIDNGNEDLAE  163 (169)
T ss_dssp             HTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHhCCHHHHH
Confidence            98766 47789999999999999999999999999998    89999999999999999999976654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.80  E-value=6.9e-20  Score=175.86  Aligned_cols=140  Identities=20%  Similarity=0.152  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhCCC-CCCcccccCCCCcccccccC---CccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHH
Q 042589           79 AIQVFDELVDDRN-PHVYKYVYNGREPRISTFGQ---DVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEM  154 (429)
Q Consensus        79 a~~iv~~Ll~~~a-~~~~~~d~~G~~P~~~~~~~---~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~ei  154 (429)
                      ..+++++|+++|+ +++ ..+..|.||+|.+...   .....+.++.+.+..   ...+..+..|+||||+|+..|+.++
T Consensus       123 ~~~~v~~Ll~~g~~~~~-~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g---~~~~~~~~~g~tpLh~A~~~g~~~~  198 (276)
T 4hbd_A          123 NFPVVQQLLDSGVCKVD-KQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG---NINAKASQAGQTALMLAVSHGRVDV  198 (276)
T ss_dssp             CHHHHHHHHHTSCCCTT-CCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHS---CTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHCCCCcCC-CCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcC---CCccccCCCCCCHHHHHHHcCCHHH
Confidence            3689999999998 888 4566799999988642   122222232222211   1124566789999999999999999


Q ss_pred             HHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHc-CCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          155 VKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRS-REELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       155 v~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~-~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |+.|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++ .|+    ++|.+|.+|+||||+|+..|+.++++
T Consensus       199 v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~ga----d~~~~d~~g~TpL~~A~~~g~~~iv~  267 (276)
T 4hbd_A          199 VKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSC----DISLTDRDGSTALMVALDAGQSEIAS  267 (276)
T ss_dssp             HHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTC----CTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC----CCcCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999998766 57889999999999999999999999999 777    89999999999999999999977664

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.80  E-value=1.2e-19  Score=167.70  Aligned_cols=181  Identities=14%  Similarity=0.006  Sum_probs=129.1

Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccccCC
Q 042589           33 SDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQD  112 (429)
Q Consensus        33 ~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~  112 (429)
                      |++.+|.. |+++.+++++.+.-.........+...++.....  ...+++++|+++|++++ ..|..|+||+|.++..+
T Consensus         9 ~l~~A~~~-g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A            9 MICNLAYS-GKLDELKERILADKSLATRTDQDSRTALHWACSA--GHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             HHHHHHHH-TCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHT
T ss_pred             hHHHHHHh-CCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHc--CcHHHHHHHHHhCCCCC-CcCCCCCCHHHHHHHcC
Confidence            56777776 8898885544211000010111111111111111  13689999999999998 45667999999887644


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHH
Q 042589          113 VNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLL  192 (429)
Q Consensus       113 ~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~L  192 (429)
                      ..+  .++.+.+...   ..+.+|..|.||||+|+..|+.+++++|++++.+ .+..|..|+||||+|+..|+.+++++|
T Consensus        85 ~~~--~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L  158 (231)
T 3aji_A           85 XDE--IVKALLVKGA---HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHIL  158 (231)
T ss_dssp             CHH--HHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHH--HHHHHHHcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            332  2333322211   1255678899999999999999999999988665 467889999999999999999999999


Q ss_pred             HcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          193 RSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       193 l~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++.+.    +++.+|.+|+||||+|+..|+.++++
T Consensus       159 l~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~  189 (231)
T 3aji_A          159 LFYKA----STNIQDTEGNTPLHLACDEERVEEAK  189 (231)
T ss_dssp             HHTTC----CSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HhcCC----CccccCCCCCCHHHHHHHCCCHHHHH
Confidence            99988    89999999999999999999987766

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.80  E-value=3.9e-20  Score=177.28  Aligned_cols=131  Identities=14%  Similarity=0.071  Sum_probs=109.5

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      .+++++|+++|++++ ..+.+|.||++.+.......+  ++.|. .+.+    .+.+|..|+||||+||+.|+.++|++|
T Consensus        99 ~~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~~~~~--~~~Ll~~g~~----~n~~d~~g~TpL~~A~~~g~~~~v~~L  171 (269)
T 4b93_B           99 ADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQV--VKCLLDSNAK----PNKKDLSGNTPLIYACSGGHHELVALL  171 (269)
T ss_dssp             TTHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHH--HHHHHHTTCC----SCCCCTTCCCHHHHHHHTTCGGGHHHH
T ss_pred             HHHHHHHHhcCCCcC-ccCCCCCCccccccccChHHH--HHHHHHCCCC----CCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence            578999999999999 455669999998866443332  22232 2222    256788999999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCC
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGD  222 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  222 (429)
                      ++++.+ ++.+|..|+||||+|+.+|+.++|++|++.|+    ++|.+|.+|+||||+|++.|+
T Consensus       172 l~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga----d~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          172 LQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLHGA----SVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC----CSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHhCCc
Confidence            998766 57889999999999999999999999999998    899999999999999988765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.79  E-value=8.7e-20  Score=164.62  Aligned_cols=136  Identities=15%  Similarity=0.127  Sum_probs=106.0

Q ss_pred             HHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 042589           81 QVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILD  160 (429)
Q Consensus        81 ~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~  160 (429)
                      +++++|+++|++++ ..+..|+||+|.++..+..+  .++.+.+...   ..+..|..|.||||+|+..|+.+++++|++
T Consensus        49 ~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  122 (192)
T 2rfm_A           49 NAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLG--IAEKLLSKGS---NVNTKDFSGKTPLMWSIIFGYSEMSYFLLE  122 (192)
T ss_dssp             GGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHH--HHHHHHHHTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHhccccc-cccccCccHHHHHHHcCCHH--HHHHHHHCCC---CCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            45577777777777 34555888888776533322  2222221111   124567789999999999999999999998


Q ss_pred             hCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          161 TFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       161 ~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++.+ ++.+|..|+||||+|+..|+.+++++|++.|+    +++.+|.+|.||||+|+..|+.++++
T Consensus       123 ~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          123 HGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGA----DISARDLTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             TTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             CCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence            8766 47789999999999999999999999999998    89999999999999999999976654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.79  E-value=6.1e-20  Score=170.09  Aligned_cols=91  Identities=23%  Similarity=0.225  Sum_probs=59.7

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHH----HHHHcCCCccc--cccccccCC
Q 042589          136 SRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVY----NLLRSREELGE--TIFWQVDNL  209 (429)
Q Consensus       136 d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv----~~Ll~~~~~~~--~~in~~D~~  209 (429)
                      |..|.||||+|+..|+.++++.|++++.+ ++.+|..|+||||+|+.+|+.+++    ++|++.++...  ...+.+|.+
T Consensus       118 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~  196 (232)
T 2rfa_A          118 IYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ  196 (232)
T ss_dssp             CCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTT
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCC
Confidence            44677777777777777777777766544 356677777777777777777766    77777665100  011567777


Q ss_pred             CCcHHHHHHHcCCCcccc
Q 042589          210 GNSALHLAATYGDHRPWH  227 (429)
Q Consensus       210 G~TpLHlAa~~g~~~~~~  227 (429)
                      |+||||+|+..|+.++++
T Consensus       197 g~tpl~~A~~~g~~~~v~  214 (232)
T 2rfa_A          197 GLTPFKLAGVEGNIVMFQ  214 (232)
T ss_dssp             SCCHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHH
Confidence            777777777777755543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.79  E-value=4.3e-19  Score=154.29  Aligned_cols=134  Identities=15%  Similarity=0.087  Sum_probs=102.2

Q ss_pred             HHHHHHHHhC-CCCCCcccccCCCCcccccccCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCcHHHHHH
Q 042589           80 IQVFDELVDD-RNPHVYKYVYNGREPRISTFGQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGVTEMVKK  157 (429)
Q Consensus        80 ~~iv~~Ll~~-~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~  157 (429)
                      .+++++|+++ +.+++ ..+..|.||+|. +..+.  .+.++.+. .+.+    .+.+|..|.||||+|+..|+.++++.
T Consensus        15 ~~~v~~ll~~~~~~~~-~~~~~g~t~L~~-~~~~~--~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~   86 (156)
T 1bd8_A           15 VQEVRRLLHRELVHPD-ALNRFGKTALQV-MMFGS--TAIALELLKQGAS----PNVQDTSGTSPVHDAARTGFLDTLKV   86 (156)
T ss_dssp             HHHHHHHHHTTCCCTT-CCCTTSCCHHHH-SCTTC--HHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhhCcCcc-ccCCCCCcHHHH-HHcCC--HHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            3455677776 22555 244557788777 33222  22222222 2221    24567789999999999999999999


Q ss_pred             HHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          158 ILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       158 Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |++++.+ ++.+|..|+||||+|+.+|+.+++++|++. +    +++.+|.+|+||||+|+..|+.++++
T Consensus        87 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~----~~~~~~~~g~t~l~~A~~~~~~~~v~  150 (156)
T 1bd8_A           87 LVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S----DLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S----CTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             HHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c----CCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            9998765 577899999999999999999999999988 6    89999999999999999999977654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.78  E-value=1.1e-19  Score=167.99  Aligned_cols=181  Identities=12%  Similarity=-0.011  Sum_probs=130.3

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTF  109 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~  109 (429)
                      ...|++.+|.. |+.+.++.++ +...........+...++-....  ...+++++|+++|++++ ..+..|.||+|.++
T Consensus        40 g~t~L~~A~~~-g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~  114 (231)
T 3aji_A           40 SRTALHWACSA-GHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASA--GXDEIVKALLVKGAHVN-AVNQNGCTPLHYAA  114 (231)
T ss_dssp             SCCHHHHHHHH-TCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHc-CcHHHHHHHH-HhCCCCCCcCCCCCCHHHHHHHc--CHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH
Confidence            56688888887 8888773332 11111111111111111111111  13689999999999999 45667999999887


Q ss_pred             cCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHH
Q 042589          110 GQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHV  188 (429)
Q Consensus       110 ~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~i  188 (429)
                      ..+..+  .++.+. .+.+    .+..|..|.||||+|+..|+.++++.|++.+.+ .+.+|..|+||||+|+..|+.++
T Consensus       115 ~~~~~~--~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~  187 (231)
T 3aji_A          115 SKNRHE--IAVMLLEGGAN----PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEE  187 (231)
T ss_dssp             HTTCHH--HHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HcCCHH--HHHHHHHcCCC----CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHH
Confidence            644332  233332 2222    255678899999999999999999999988665 47789999999999999999999


Q ss_pred             HHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccc
Q 042589          189 YNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPW  226 (429)
Q Consensus       189 v~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~  226 (429)
                      +++|++.|+    +++.+|.+|.||||+|+..++.++.
T Consensus       188 v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~i~  221 (231)
T 3aji_A          188 AKFLVTQGA----SIYIENKEEKTPLQVAKGGLGLILK  221 (231)
T ss_dssp             HHHHHHTTC----CSCCCCTTSCCHHHHSCHHHHHHHH
T ss_pred             HHHHHHCCC----CCCCCCCCCCCHHHHHHhhHHHHHH
Confidence            999999998    8999999999999999887775543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.78  E-value=8.8e-20  Score=180.99  Aligned_cols=92  Identities=18%  Similarity=0.154  Sum_probs=49.0

Q ss_pred             CCCCCCcHHHHHHHcC--cHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCc-cccccccccCCCC
Q 042589          135 RSRRKETPILVAAKMG--VTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREEL-GETIFWQVDNLGN  211 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G--~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~-~~~~in~~D~~G~  211 (429)
                      .|..|.||||+|+..|  +.+++++|++++.+ ++..|..|+||||+|+.+|+.+++++|++.++. ...++|.+|.+|+
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~  212 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN  212 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence            4445555555555555  55555555555433 344555555555555555555555555555441 0111555555555


Q ss_pred             cHHHHHHHcCCCcccc
Q 042589          212 SALHLAATYGDHRPWH  227 (429)
Q Consensus       212 TpLHlAa~~g~~~~~~  227 (429)
                      ||||+|+..|+.++++
T Consensus       213 t~L~~A~~~g~~~~v~  228 (364)
T 3ljn_A          213 SHLHWAILINWEDVAM  228 (364)
T ss_dssp             CTTHHHHTTTCHHHHH
T ss_pred             cHHHHHHHcCCHHHHH
Confidence            5555555555555444

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.78  E-value=2.9e-19  Score=157.37  Aligned_cols=137  Identities=15%  Similarity=0.123  Sum_probs=107.4

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|++++++++ ..|..|.||+|.++..+..  +.++.+.+...   ..+..|..|.||||+|+..|+.+++++|+
T Consensus        16 ~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   89 (167)
T 3v31_A           16 MLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQI--AVVEFLLQNGA---DPQLLGKGRESALSLACSKGYTDIVKMLL   89 (167)
T ss_dssp             HHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCH--HHHHHHHHTTC---CTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCH--HHHHHHHHcCC---CCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            345577788888777 3555688888877654332  22333322111   12456778999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +++.+ ++..|..|+||||+|+..|+.+++++|++.++    +++.+|.+|.||||+|+..|+.++++
T Consensus        90 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (167)
T 3v31_A           90 DCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA----DPTIETDSGYNSMDLAVALGYRSVQQ  152 (167)
T ss_dssp             HHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            98766 47789999999999999999999999999988    89999999999999999999966553

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.78  E-value=3.8e-19  Score=163.53  Aligned_cols=182  Identities=13%  Similarity=-0.013  Sum_probs=117.8

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCC-CCCcccccCCCCccccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRN-PHVYKYVYNGREPRIST  108 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a-~~~~~~d~~G~~P~~~~  108 (429)
                      ...|++.+|.. |+.+.++.++ +...........+...++.....  ...+++++|+++++ +++ ..+..|.||+|.+
T Consensus        25 g~t~L~~A~~~-g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~-~~~~~g~t~L~~A   99 (223)
T 2f8y_A           25 GETALHLAARY-SRSDAAKRLL-EASADANIQDNMGRTPLHAAVSA--DAQGVFQILIRNRATDLD-ARMHDGTTPLILA   99 (223)
T ss_dssp             CCCHHHHHHHT-TCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHBTTSCTT-CCCTTCCCHHHHH
T ss_pred             CCchHHHHHHc-CCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCcc-cCCCCCCcHHHHH
Confidence            45688888877 8888773332 11111110111111111111111  13578888888877 666 3455688888877


Q ss_pred             ccCCccccccccCCCC-CCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHH
Q 042589          109 FGQDVNAFTARETPPD-PNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTH  187 (429)
Q Consensus       109 ~~~~~~~~~~i~ll~~-~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~  187 (429)
                      ...+..+  .++.+.+ +.+    .+..|..|.||||+|+..|+.+++++|++++.+ .+.+|..|+||||+|+.+|+.+
T Consensus       100 ~~~~~~~--~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~  172 (223)
T 2f8y_A          100 ARLAVEG--MLEDLINSHAD----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYE  172 (223)
T ss_dssp             HHHTCHH--HHHHHHHTTCC----TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHhCcHH--HHHHHHHcCCC----CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHH
Confidence            6533322  2222222 211    245667788888888888888888888887655 4667888888888888888888


Q ss_pred             HHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          188 VYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       188 iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++++|++.++    +++.+|.+|.||||+|+..|+.++++
T Consensus       173 ~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~i~~  208 (223)
T 2f8y_A          173 TAKVLLDHFA----NRDITDHMDRLPRDIAQERMHHDIVR  208 (223)
T ss_dssp             HHHHHHHTTC----CTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCC----CCccccccCCCHHHHHHHhcchHHHH
Confidence            8888888887    78888888888888888888866654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.78  E-value=2.4e-19  Score=176.24  Aligned_cols=132  Identities=11%  Similarity=0.027  Sum_probs=105.5

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCc----cccccccCCCCCCCcccccccCCCCCCcHHHHHHH----cCc
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDV----NAFTARETPPDPNTYKKKNARRSRRKETPILVAAK----MGV  151 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~----~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~----~G~  151 (429)
                      .+++++|+++|+++| ..|..|+||+|.++..+.    ..+.  .+++...   .+.+.+|..|+||||+|++    .|+
T Consensus       144 ~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~--~ll~~~~---~~~~~~d~~g~tpLh~A~~~~~~~g~  217 (327)
T 1sw6_A          144 LELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFE--ALLDYLY---PCLILEDSMNRTILHHIIITSGMTGC  217 (327)
T ss_dssp             HHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHH--HHHHHHG---GGGGEECTTCCCHHHHHHHHHTSTTC
T ss_pred             HHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHHH--HHHHhhh---ccccCCCCCCCCHHHHHHHHcccccc
Confidence            689999999999999 466679999999876543    2211  1111110   1236778899999999999    999


Q ss_pred             HHHHHHHHHhCCC--------------------------------------------ccccCCCCCCcHHHHHHHcCCHH
Q 042589          152 TEMVKKILDTFPV--------------------------------------------AIWDLDPGEKNVLLLAIENRQTH  187 (429)
Q Consensus       152 ~eiv~~Ll~~~~~--------------------------------------------~~~~~d~~G~t~LH~A~~~g~~~  187 (429)
                      .++++.|++....                                            .++.+|..|+||||+|+.+|+.+
T Consensus       218 ~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~  297 (327)
T 1sw6_A          218 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS  297 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHH
Confidence            9999999876310                                            15678999999999999999999


Q ss_pred             HHHHHHcCCCccccccccccCCCCcHHHHHHHcC
Q 042589          188 VYNLLRSREELGETIFWQVDNLGNSALHLAATYG  221 (429)
Q Consensus       188 iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g  221 (429)
                      ++++|++.|+    +++.+|.+|+||||+|++.|
T Consensus       298 ~v~~Ll~~Ga----d~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          298 IVDALLDYGA----DPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHHTTC----CTTCCCTTSCCGGGGTCC--
T ss_pred             HHHHHHHcCC----CCcccCCCCCCHHHHHHhcC
Confidence            9999999998    89999999999999998765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.78  E-value=1.2e-19  Score=181.65  Aligned_cols=190  Identities=11%  Similarity=0.034  Sum_probs=133.6

Q ss_pred             CCCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCC---CCCCcccccCCCCcc
Q 042589           29 QLFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDR---NPHVYKYVYNGREPR  105 (429)
Q Consensus        29 ~~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~---a~~~~~~d~~G~~P~  105 (429)
                      ....|++.+|.. |+.++++.++ +...+..-....+...++-....  ...+++++|++++   ++++ ..|..|.||+
T Consensus       165 ~g~TpL~~A~~~-g~~~iv~~Ll-~~ga~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~-~~d~~g~t~L  239 (373)
T 2fo1_E          165 DENTPLMLAVLA-RRRRLVAYLM-KAGADPTIYNKSERSALHQAAAN--RDFGMMVYMLNSTKLKGDIE-ELDRNGMTAL  239 (373)
T ss_dssp             TSCCHHHHHHHH-TCHHHHHHHH-HTTCCSCCCCTTCCCHHHHHHHT--TCHHHHHHHTTSHHHHHTTS-CCCTTSCCHH
T ss_pred             CCCCHHHHHHHc-ChHHHHHHHH-HCCCCCcccCCCCCCHHHHHHHC--CCHHHHHHHHhcCccccChh-hcCCCCCCHH
Confidence            356788888888 8888773322 21111110111111111111111  1368999999998   7888 4566799999


Q ss_pred             cccccCC-ccccccccCCCC-CCCccc----ccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHH
Q 042589          106 ISTFGQD-VNAFTARETPPD-PNTYKK----KNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLL  179 (429)
Q Consensus       106 ~~~~~~~-~~~~~~i~ll~~-~~~~~~----~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~  179 (429)
                      |.++..+ ....+.++.|.+ +.+...    ..+..|..|+||||+|+..|+.++|++|+++++..++.+|..|+||||+
T Consensus       240 ~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~  319 (373)
T 2fo1_E          240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML  319 (373)
T ss_dssp             HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred             HHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHH
Confidence            9876533 123333333322 222111    1234677899999999999999999999998766678899999999999


Q ss_pred             HHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          180 AIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       180 A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |+.+|+.+++++|++.|+    +++.+|.+|+||||+|+..|+.++++
T Consensus       320 A~~~g~~~iv~~Ll~~ga----d~~~~d~~g~t~l~~A~~~g~~~iv~  363 (373)
T 2fo1_E          320 AAQEGRIEVVMYLIQQGA----SVEAVDATDHTARQLAQANNHHNIVD  363 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTC----CSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCC----CccCCCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999998    89999999999999999999977765

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.77  E-value=2.8e-19  Score=165.65  Aligned_cols=139  Identities=14%  Similarity=0.012  Sum_probs=109.6

Q ss_pred             HHHHHHHHhC-CCCCCcccccCCCCcccccccCCccccccccCCCC-CCC-cccccccCCCCCCcHHHHHHHcCcHHHHH
Q 042589           80 IQVFDELVDD-RNPHVYKYVYNGREPRISTFGQDVNAFTARETPPD-PNT-YKKKNARRSRRKETPILVAAKMGVTEMVK  156 (429)
Q Consensus        80 ~~iv~~Ll~~-~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~-~~~-~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~  156 (429)
                      .+++++|+++ |++++ ..|..|+||+|.++..+..+  .++.|.+ +.. .....+..|.+|+||||+|+..|+.++++
T Consensus        16 ~~~v~~Ll~~~g~~~~-~~~~~g~t~L~~A~~~g~~~--~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~   92 (232)
T 2rfa_A           16 VQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLE--AAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR   92 (232)
T ss_dssp             HHHHHHHHTTTCSCTT-CCCTTSCCHHHHHHHTTCHH--HHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhcCCCcc-cCCCCCCCHHHHHHHcCCHH--HHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHH
Confidence            4567888987 99998 45667999999887644332  2333322 211 11222556779999999999999999999


Q ss_pred             HHHHhCCCccccCCC-------------CCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCC
Q 042589          157 KILDTFPVAIWDLDP-------------GEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDH  223 (429)
Q Consensus       157 ~Ll~~~~~~~~~~d~-------------~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~  223 (429)
                      +|++++.+. +..+.             .|+||||+|+..|+.+++++|++.|+    ++|.+|.+|+||||+|+..|+.
T Consensus        93 ~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~t~L~~A~~~~~~  167 (232)
T 2rfa_A           93 ALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA----DIRAQDSLGNTVLHILILQPNK  167 (232)
T ss_dssp             HHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHTCSCH
T ss_pred             HHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHcCCh
Confidence            999987654 44443             79999999999999999999999998    8999999999999999999997


Q ss_pred             ccc
Q 042589          224 RPW  226 (429)
Q Consensus       224 ~~~  226 (429)
                      +++
T Consensus       168 ~~~  170 (232)
T 2rfa_A          168 TFA  170 (232)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.77  E-value=1.1e-18  Score=154.46  Aligned_cols=136  Identities=16%  Similarity=0.099  Sum_probs=100.3

Q ss_pred             HHHHHHHhCCCC-CCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           81 QVFDELVDDRNP-HVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        81 ~iv~~Ll~~~a~-~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      ++++.|++++.+ ++ ..|..|+||+|.++..+..+  .++.+.+...   ..+..|..|+||||+|+..|+.++++.|+
T Consensus        16 ~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   89 (172)
T 3v30_A           16 DQLKEHLRKGDNLVN-KPDERGFTPLIWASAFGEIE--TVRFLLEWGA---DPHILAKERESALSLASTGGYTDIVGLLL   89 (172)
T ss_dssp             HHHHHHHTTCSGGGG-CCCTTSCCHHHHHHHTTCHH--HHHHHHHHTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCccccc-CCCCCCCCHHHHHHHcCCHH--HHHHHHHcCC---CchhhcccCCCHHHHHHHCCCHHHHHHHH
Confidence            344566666554 34 23445666666555433221  1222221110   11345678999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +++.+ ++.+|..|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|+..|+.++++
T Consensus        90 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (172)
T 3v30_A           90 ERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGA----DLTTEADSGYTPMDLAVALGYRKVQQ  152 (172)
T ss_dssp             TTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCCHHHHHHHhCcHHHHH
Confidence            88665 57789999999999999999999999999998    89999999999999999999866654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.77  E-value=4.5e-19  Score=163.04  Aligned_cols=138  Identities=17%  Similarity=0.143  Sum_probs=110.2

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|++++ ..+..|+||+|.++..+..+  .++.+.+....  ..+..+..|.||||+|+..|+.++++.|+
T Consensus        38 ~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  112 (223)
T 2f8y_A           38 SDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQG--VFQILIRNRAT--DLDARMHDGTTPLILAARLAVEGMLEDLI  112 (223)
T ss_dssp             HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHH--HHHHHHHBTTS--CTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHH--HHHHHHHcCCC--CcccCCCCCCcHHHHHHHhCcHHHHHHHH
Confidence            688999999999998 45667999999887644332  23333222111  12456778999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +++.+ ++..|..|+||||+|+..|+.+++++|++.++    +++.+|.+|+||||+|+..|+.++++
T Consensus       113 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~  175 (223)
T 2f8y_A          113 NSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYETAK  175 (223)
T ss_dssp             HTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCcCHHHHHHHcCCHHHHH
Confidence            87665 46788999999999999999999999999987    88999999999999999999977765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.77  E-value=3.7e-19  Score=165.62  Aligned_cols=140  Identities=15%  Similarity=0.074  Sum_probs=112.3

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCC-CCCc--ccccccCCCCCCcHHHHHHHcCcHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPD-PNTY--KKKNARRSRRKETPILVAAKMGVTEMVK  156 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~-~~~~--~~~~~~~d~~G~TpLh~Aa~~G~~eiv~  156 (429)
                      .+++++|+++|++++ ..+..|+||+|.++..+..+  .++.+.+ +...  ....+..+..|.||||+|+..|+.++++
T Consensus        58 ~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  134 (236)
T 1ikn_D           58 PEIAEALLGAGCDPE-LRDFRGNTPLHLACEQGCLA--SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE  134 (236)
T ss_dssp             HHHHHCCCSCCCCSC-CCCTTCCCHHHHHHHHTCHH--HHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHH--HHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHH
Confidence            578899999999999 45667999999887644322  2322222 2211  1123567788999999999999999999


Q ss_pred             HHHHhCCCccccCCC-CCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          157 KILDTFPVAIWDLDP-GEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       157 ~Ll~~~~~~~~~~d~-~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +|++++.+. +.+|. .|+||||+|+..|+.+++++|++.|+    +++.+|.+|.||||+|+..|+.++++
T Consensus       135 ~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A~~~~~~~~~~  201 (236)
T 1ikn_D          135 LLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTYQGYSPYQLTWGRPSTRIQQ  201 (236)
T ss_dssp             HHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC----CSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             HHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCcccCCCCCHHHHHHccCchHHHH
Confidence            999987664 66776 99999999999999999999999998    89999999999999999999977765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.76  E-value=2.2e-19  Score=169.25  Aligned_cols=136  Identities=13%  Similarity=0.037  Sum_probs=103.2

Q ss_pred             HHHHHHHhCCCCCCc---ccccCCCCcccccccC-CccccccccCCCCC-CCc-------ccccccCCCCCCcHHHHHHH
Q 042589           81 QVFDELVDDRNPHVY---KYVYNGREPRISTFGQ-DVNAFTARETPPDP-NTY-------KKKNARRSRRKETPILVAAK  148 (429)
Q Consensus        81 ~iv~~Ll~~~a~~~~---~~d~~G~~P~~~~~~~-~~~~~~~i~ll~~~-~~~-------~~~~~~~d~~G~TpLh~Aa~  148 (429)
                      .++++|+++|++++.   ..|..|+||+|.++.. .....+.++.|.+. ...       .......|..|.||||+|+.
T Consensus        20 ~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~   99 (256)
T 2etb_A           20 GLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE   99 (256)
T ss_dssp             THHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHH
Confidence            467889999999992   1477799999988764 11222233333221 110       00012245679999999999


Q ss_pred             cCcHHHHHHHHHhCCCccccCCCC-------------CCcHHHHHHHcCCHHHHHHHHc---CCCccccccccccCCCCc
Q 042589          149 MGVTEMVKKILDTFPVAIWDLDPG-------------EKNVLLLAIENRQTHVYNLLRS---REELGETIFWQVDNLGNS  212 (429)
Q Consensus       149 ~G~~eiv~~Ll~~~~~~~~~~d~~-------------G~t~LH~A~~~g~~~iv~~Ll~---~~~~~~~~in~~D~~G~T  212 (429)
                      .|+.++++.|++++.+ ++..|..             |+||||+|+..|+.+++++|++   .|+    ++|.+|.+|+|
T Consensus       100 ~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga----~~n~~d~~g~T  174 (256)
T 2etb_A          100 KRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA----SLEATDSLGNT  174 (256)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC----CTTCCCTTSCC
T ss_pred             cCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC----CcCccCCCCCC
Confidence            9999999999998766 4666665             9999999999999999999999   787    89999999999


Q ss_pred             HHHHHHHcC
Q 042589          213 ALHLAATYG  221 (429)
Q Consensus       213 pLHlAa~~g  221 (429)
                      |||+|+..+
T Consensus       175 pLh~A~~~~  183 (256)
T 2etb_A          175 VLHALVMIA  183 (256)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHcc
Confidence            999999943

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.76  E-value=2.3e-18  Score=146.94  Aligned_cols=104  Identities=16%  Similarity=0.121  Sum_probs=93.1

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|++++                                       ..|..|+||||+|+..|+.++++.|+
T Consensus        27 ~~~v~~Ll~~g~~~~---------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll   67 (136)
T 2jab_A           27 DDEVRILMANGADVN---------------------------------------AKDEYGLTPLYLATAHGHLEIVEVLL   67 (136)
T ss_dssp             HHHHHHHHHTTCCTT---------------------------------------CCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCC---------------------------------------CcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            456689999999887                                       24567999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +++.+ ++..|..|+||||+|+..|+.+++++|++.++    +++.+|.+|+||||+|+..|+.++++
T Consensus        68 ~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~tpl~~A~~~~~~~~~~  130 (136)
T 2jab_A           68 KNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA----DVNAQDKFGKTAFDISIGNGNEDLAE  130 (136)
T ss_dssp             HTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcCcCCCCCCHHHHHHHCCCHHHHH
Confidence            98665 57789999999999999999999999999998    89999999999999999999976654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.76  E-value=7.2e-19  Score=162.04  Aligned_cols=177  Identities=13%  Similarity=-0.007  Sum_probs=126.7

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHH--HHHHh-cCchhhHhHHHhhhhchhHHHHHHHHHhCC--CCCCcccccCCCCc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVI--WYAIY-AGIRGIKNVREKKETHTWAIQVFDELVDDR--NPHVYKYVYNGREP  104 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~--~~~~~-~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~--a~~~~~~d~~G~~P  104 (429)
                      ...|++.+|.. |..+.+..++ +..  ..... ....+...++-....  ...+++++|+++|  ++++ ..+..|.||
T Consensus        36 g~t~L~~A~~~-~~~~~v~~Ll-~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~  110 (228)
T 2dzn_A           36 GRIPLHWSVSF-QAHEITSFLL-SKMENVNLDDYPDDSGWTPFHIACSV--GNLEVVKSLYDRPLKPDLN-KITNQGVTC  110 (228)
T ss_dssp             SCCHHHHHHHT-TCHHHHHHHH-HTCTTCCGGGCCCTTSCCHHHHHHHH--CCHHHHHHHHSSSSCCCTT-CCCTTCCCH
T ss_pred             CCCHHHHHHHc-CCHHHHHHHH-hccccccccccCCCCCCCHHHHHHHc--CCHHHHHHHHhCCCCcccc-cCCcCCCCH
Confidence            45688888887 8888773332 111  00000 011111111111111  1368999999999  7777 355669999


Q ss_pred             ccccccCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHc
Q 042589          105 RISTFGQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIEN  183 (429)
Q Consensus       105 ~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~  183 (429)
                      +|.+...+..  +.++.+. .+.+    .+.+|..|+||||+|+..|+.++++.|++.++..++.+|..|+||||+|+..
T Consensus       111 L~~A~~~~~~--~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~  184 (228)
T 2dzn_A          111 LHLAVGKKWF--EVSQFLIENGAS----VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE  184 (228)
T ss_dssp             HHHHHHTTCH--HHHHHHHHTTCC----SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCH--hHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHc
Confidence            9988764432  2233332 2222    2567789999999999999999999999988566788999999999999999


Q ss_pred             CCHHHHHHHH-cCCCccccccccccCCCCcHHHHHHHcC
Q 042589          184 RQTHVYNLLR-SREELGETIFWQVDNLGNSALHLAATYG  221 (429)
Q Consensus       184 g~~~iv~~Ll-~~~~~~~~~in~~D~~G~TpLHlAa~~g  221 (429)
                      |+.+++++|+ +.|+    +++.+|.+|.||||+|+..+
T Consensus       185 ~~~~~v~~Ll~~~ga----~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          185 GHGDAAVLLVEKYGA----EYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             TCHHHHHHHHHHHCC----CSCCBCTTSCBGGGGCSSTT
T ss_pred             CCHHHHHHHHHhcCC----CCCccCCCCCcHHHHHHHHH
Confidence            9999999999 7888    89999999999999997643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.76  E-value=1.1e-18  Score=148.83  Aligned_cols=87  Identities=17%  Similarity=0.077  Sum_probs=79.3

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCC-CCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPG-EKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSA  213 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~-G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~Tp  213 (429)
                      +|..|+||||+|+. |+.+++++|++++.+ ++.+|.. |+||||+|+..|+.+++++|++.++    +++.+|.+|+||
T Consensus        41 ~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tp  114 (136)
T 1d9s_A           41 LNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA----RLDVCDAWGRLP  114 (136)
T ss_dssp             CCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCC----CCCCCSSSSSCH
T ss_pred             cCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCCCH
Confidence            45689999999999 999999999998766 4778888 9999999999999999999999998    899999999999


Q ss_pred             HHHHHHcCCCcccc
Q 042589          214 LHLAATYGDHRPWH  227 (429)
Q Consensus       214 LHlAa~~g~~~~~~  227 (429)
                      ||+|+..|+.++++
T Consensus       115 l~~A~~~~~~~~~~  128 (136)
T 1d9s_A          115 VDLAEEQGHRDIAR  128 (136)
T ss_dssp             HHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            99999999876654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.76  E-value=2.4e-19  Score=166.41  Aligned_cols=183  Identities=9%  Similarity=-0.028  Sum_probs=129.7

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCC----CCCcccccCCCCcc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRN----PHVYKYVYNGREPR  105 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a----~~~~~~d~~G~~P~  105 (429)
                      ...|++.+|.. |+.+.+..++ +...........+...++.....  ...+++++|+++++    +++ ..+..|.||+
T Consensus        46 g~t~L~~A~~~-~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~--~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L  120 (241)
T 1k1a_A           46 RQTPLHLAVIT-TLPSVVRLLV-TAGASPMALDRHGQTAAHLACEH--RSPTCLRALLDSAAPGTLDLE-ARNYDGLTAL  120 (241)
T ss_dssp             SCCHHHHHHHT-TCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHH
T ss_pred             CCCHHHHHHHc-CCHHHHHHHH-HcCCCccccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCcccccc-ccCcCCCcHH
Confidence            45688888887 8888773332 11111111111111111111111  23689999999998    666 3455699999


Q ss_pred             cccccCCccccccccCCC-CCCCcccccccCC-CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHc
Q 042589          106 ISTFGQDVNAFTARETPP-DPNTYKKKNARRS-RRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIEN  183 (429)
Q Consensus       106 ~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d-~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~  183 (429)
                      |.++..+..  +.++.+. .+.+.    +..+ ..|.||||+|++.|+.++++.|++++.+ ++.+|..|+||||+|+..
T Consensus       121 ~~A~~~~~~--~~~~~Ll~~g~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~  193 (241)
T 1k1a_A          121 HVAVNTECQ--ETVQLLLERGADI----DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGR  193 (241)
T ss_dssp             HHHHHHTCH--HHHHHHHHTTCCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHH
T ss_pred             HHHHHcCCH--HHHHHHHHcCCCc----ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence            988764432  2233332 22221    3344 6799999999999999999999998766 577899999999999999


Q ss_pred             CCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          184 RQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       184 g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      |+.+++++|++.|+    +++.+|.+|+||||+|+..|+.++++.
T Consensus       194 ~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A~~~~~~~i~~~  234 (241)
T 1k1a_A          194 GLLPLVRTLVRSGA----DSSLKNCHNDTPLMVARSRRVIDILRG  234 (241)
T ss_dssp             TCHHHHHHHHHTTC----CTTCCCTTSCCTTTTCSSHHHHHHHTC
T ss_pred             CCHHHHHHHHhcCC----CCCCcCCCCCCHHHHHHhcCcHHHHhh
Confidence            99999999999998    899999999999999999988776653

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.76  E-value=7.8e-19  Score=169.06  Aligned_cols=180  Identities=13%  Similarity=-0.002  Sum_probs=124.3

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTF  109 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~  109 (429)
                      ...|++.+|.. |+.+.++.++ +...+.......+...++-....  ...+++++|+++|++++ ..|..|+||+|.++
T Consensus        59 g~t~L~~Aa~~-g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~  133 (285)
T 3d9h_A           59 DWSPMHEAAIH-GHQLSLRNLI-SQGWAVNIITADHVSPLHEACLG--GHLSCVKILLKHGAQVN-GVTADWHTPLFNAC  133 (285)
T ss_dssp             SCCHHHHHHHT-TCHHHHHHHH-HTTCCSCEECTTCCCHHHHHHHT--TCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHH
T ss_pred             CCCHHHHHHHc-CCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHC--CcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH
Confidence            56788888887 8888773332 11111110111111111111111  13689999999999998 45667999999887


Q ss_pred             cCCccccccccCCCC-CCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHH
Q 042589          110 GQDVNAFTARETPPD-PNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHV  188 (429)
Q Consensus       110 ~~~~~~~~~i~ll~~-~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~i  188 (429)
                      ..+..+  .++.|.+ +.+.    + .+.+|.||||+|+..|+.++++.|++.+.+ ++.+|..|+||||+|+..|+.++
T Consensus       134 ~~~~~~--~v~~Ll~~g~~~----~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~  205 (285)
T 3d9h_A          134 VSGSWD--CVNLLLQHGASV----Q-PESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRAC  205 (285)
T ss_dssp             HHTCHH--HHHHHHHTTCCS----S-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHH
T ss_pred             HcCHHH--HHHHHHHCCCCC----C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHH
Confidence            644332  2333322 2221    1 234599999999999999999999988765 47788999999999999999999


Q ss_pred             HHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          189 YNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       189 v~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +++|++.++    ++|. |.+|+||||+|+..|+.++++
T Consensus       206 v~~Ll~~ga----~~~~-~~~g~t~L~~A~~~~~~~~v~  239 (285)
T 3d9h_A          206 VKKLLESGA----DVNQ-GKGQDSPLHAVVRTASEELAC  239 (285)
T ss_dssp             HHHHHHTTC----CTTC-CBTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCC----CCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            999999987    6774 889999999999999977665

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.75  E-value=6.2e-19  Score=159.84  Aligned_cols=145  Identities=17%  Similarity=0.083  Sum_probs=110.1

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchh--------HHHHHHHHHhCCCCCCcccccCC
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTW--------AIQVFDELVDDRNPHVYKYVYNG  101 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~--------a~~iv~~Ll~~~a~~~~~~d~~G  101 (429)
                      .|.++|.++.. |+++.+++++     .   .+........+....|..        ..+++++|+++|+++|       
T Consensus         6 ~~~~l~~Aa~~-g~~~~~~~l~-----~---~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-------   69 (186)
T 3t8k_A            6 EYRTVSAAAML-GTYEDFLELF-----E---KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-------   69 (186)
T ss_dssp             HCSSHHHHHHH-SCHHHHHHHH-----H---HSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-------
T ss_pred             cccHHHHHHHc-CCHHHHHHHH-----h---cCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-------
Confidence            35678888877 8888764433     1   111111112222233322        3578999999999988       


Q ss_pred             CCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCc------HHHHHHHHHhCCCccccCCCCCC-
Q 042589          102 REPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGV------TEMVKKILDTFPVAIWDLDPGEK-  174 (429)
Q Consensus       102 ~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~------~eiv~~Ll~~~~~~~~~~d~~G~-  174 (429)
                                                      .+|.+|+||||+|+..|+      .++++.|++++.+ ++.+|..|+ 
T Consensus        70 --------------------------------~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~t  116 (186)
T 3t8k_A           70 --------------------------------SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKI  116 (186)
T ss_dssp             --------------------------------CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTB
T ss_pred             --------------------------------CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCc
Confidence                                            245789999999999997      6899999998766 588999999 


Q ss_pred             cHHHHHHHcC-----CHHHHHHHHc-CCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          175 NVLLLAIENR-----QTHVYNLLRS-REELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       175 t~LH~A~~~g-----~~~iv~~Ll~-~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ||||+|+..+     +.+++++|++ .|+    ++|.+|.+|+||||+|+..|+.++++
T Consensus       117 tpLh~A~~~~~~~~~~~~iv~~Ll~~~ga----d~~~~d~~G~TpL~~A~~~~~~~~v~  171 (186)
T 3t8k_A          117 VVFKNIFNYFVDENEMIPLYKLIFSQSGL----QLLIKDKWGLTALEFVKRCQKPIALK  171 (186)
T ss_dssp             CTTGGGGGCCSCHHHHHHHHHHHHTSTTC----CTTCCCTTSCCHHHHHHTTTCHHHHH
T ss_pred             hHHHHHHHcCCChhhHHHHHHHHHHhcCC----CCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999954     4579999999 888    99999999999999999999966554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.75  E-value=7.1e-19  Score=168.98  Aligned_cols=181  Identities=16%  Similarity=0.089  Sum_probs=121.3

Q ss_pred             CchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccccC
Q 042589           32 PSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQ  111 (429)
Q Consensus        32 ~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~  111 (429)
                      .+++.+|.. |+.+.++.++ +...+.......+...++-....  ...+++++|+++|++++ ..|..|.||+|.++..
T Consensus        42 t~l~~A~~~-g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           42 AVFLAACSS-GDTEEVLRLL-ERGADINYANVDGLTALHQACID--DNVDMVKFLVENGANIN-QPDNEGWIPLHAAASC  116 (299)
T ss_dssp             HHHHHHHHH-TCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHHT--TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred             cHHHHHHHc-CCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHc
Confidence            366777776 9999884443 21111111111111122211111  13689999999999998 4566799999988764


Q ss_pred             CccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCc-------------------------
Q 042589          112 DVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVA-------------------------  165 (429)
Q Consensus       112 ~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~-------------------------  165 (429)
                      +..+  .++.|. .+.+    .+..|..|.||||+|+..|+.++++.++...+..                         
T Consensus       117 g~~~--~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (299)
T 1s70_B          117 GYLD--IAEYLISQGAH----VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (299)
T ss_dssp             TCHH--HHHHHHHTTCC----TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCHH--HHHHHHhCCCC----CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence            4332  233332 2222    2456778889999998888888888777543221                         


Q ss_pred             -cccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          166 -IWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       166 -~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                       ....|..|+||||+|+.+|+.+++++|++.|+    ++|.+|.+|+||||+|+..|+.++++
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----d~~~~d~~g~tpL~~A~~~~~~~~v~  249 (299)
T 1s70_B          191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY----DVNIKDYDGWTPLHAAAHWGKEEACR  249 (299)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC----CTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC----CCCCcCCCCCcHHHHHHhcCCHHHHH
Confidence             12246788999999999999999999998887    88889999999999999999877765

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.75  E-value=5.5e-19  Score=165.64  Aligned_cols=136  Identities=11%  Similarity=-0.067  Sum_probs=94.4

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .++++.|+++|++++  ++..|.||+|.++..+..  +.++.|.+...   +.+.+|..|+||||+||..|+.+++++|+
T Consensus        18 ~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~--~~v~~Ll~~g~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   90 (239)
T 1ycs_B           18 RKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEF--DLVQRIIYEVD---DPSLPNDEGITALHNAVCAGHTEIVKFLV   90 (239)
T ss_dssp             ---------------------CHHHHHHHHHHTCH--HHHHHHTSTTS---SCCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCH--HHHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            456788888888888  666788888877653332  23333332221   22567889999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCC-cHHHHH--HHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGN-SALHLA--ATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~-TpLHlA--a~~g~~~~~~  227 (429)
                      +++.+ ++.+|..|+||||+|+.+|+.+++++|++.|+    +++.+|.+|. ||||+|  +..|+.++++
T Consensus        91 ~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           91 QFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGA----AVFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             HHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             HcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CcceecCCCCcchHHHHHHhhhccHHHHH
Confidence            98766 57889999999999999999999999999998    8999998887 999999  7778877664

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.75  E-value=3e-18  Score=167.43  Aligned_cols=187  Identities=13%  Similarity=0.027  Sum_probs=125.2

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTF  109 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~  109 (429)
                      ...|++.+|.. |..++++.++ +...+.......+...++-....  ...+++++|+++|++++ ..+..|.||+|.+.
T Consensus        58 g~t~L~~A~~~-g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~  132 (351)
T 3utm_A           58 KSTPLHLAAGY-NRVRIVQLLL-QHGADVHAKDKGGLVPLHNACSY--GHYEVTELLLKHGACVN-AMDLWQFTPLHEAA  132 (351)
T ss_dssp             CCCHHHHHHHT-TCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHH
T ss_pred             CCCHHHHHHHc-CCHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHC--CCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH
Confidence            45678888777 8887773332 21111111111111111111111  13688899999999888 35556999998776


Q ss_pred             cCCccccccccCC-CCCCCccc--------------------------------------------------ccccCCCC
Q 042589          110 GQDVNAFTARETP-PDPNTYKK--------------------------------------------------KNARRSRR  138 (429)
Q Consensus       110 ~~~~~~~~~i~ll-~~~~~~~~--------------------------------------------------~~~~~d~~  138 (429)
                      ..+..+  .++.| +.+.+...                                                  .....+..
T Consensus       133 ~~~~~~--~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  210 (351)
T 3utm_A          133 SKNRVE--VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS  210 (351)
T ss_dssp             HTTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTT
T ss_pred             HcCCHH--HHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCC
Confidence            533322  12222 11111100                                                  11234567


Q ss_pred             CCcHHHHHHHc---CcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHH
Q 042589          139 KETPILVAAKM---GVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALH  215 (429)
Q Consensus       139 G~TpLh~Aa~~---G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLH  215 (429)
                      |.||||+|+..   +..++++.|++.+.+ ++.+|..|+||||+|+.+|+.+++++|++.|+    ++|.+|.+|+||||
T Consensus       211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~n~~d~~g~t~L~  285 (351)
T 3utm_A          211 HETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA----KMNALDSLGQTALH  285 (351)
T ss_dssp             CCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHH
T ss_pred             CCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHH
Confidence            89999999999   558999999988665 47789999999999999999999999999998    89999999999999


Q ss_pred             HHHHcCCCccccc
Q 042589          216 LAATYGDHRPWHT  228 (429)
Q Consensus       216 lAa~~g~~~~~~~  228 (429)
                      +|+..|+.+++++
T Consensus       286 ~A~~~~~~~~v~~  298 (351)
T 3utm_A          286 RAALAGHLQTCRL  298 (351)
T ss_dssp             HHHHHTCHHHHHH
T ss_pred             HHHHcCcHHHHHH
Confidence            9999999887763

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.75  E-value=2.7e-19  Score=172.39  Aligned_cols=180  Identities=12%  Similarity=0.005  Sum_probs=130.8

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTF  109 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~  109 (429)
                      ...|++.+|.. |+.+.+..++ +...+....  .+...++-....  ...+++++|+++|++++ ..|..|+||+|.++
T Consensus        31 g~t~L~~A~~~-g~~~~v~~Ll-~~g~~~~~~--~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~  103 (285)
T 3kea_A           31 GHSASYYAIAD-NNVRLVCTLL-NAGALKNLL--ENEFPLHQAATL--EDTKIVKILLFSGLDDS-QFDDKGNTALYYAV  103 (285)
T ss_dssp             SCCHHHHHHHT-TCHHHHHHHH-HTTGGGSCC--TTCCHHHHHTTS--SSCHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHc-CCHHHHHHHH-hCCCCCCCC--CCCCHHHHHHHc--CCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHH
Confidence            56788888887 8888774333 221111111  011111111111  13689999999999999 45667999999887


Q ss_pred             cCCccccccccCCCCCCCcccccccCCCCC-CcHHHHHHHcCcHHHHHHHHHhCCCccccCCC-CCCcHHHHHHHcCCHH
Q 042589          110 GQDVNAFTARETPPDPNTYKKKNARRSRRK-ETPILVAAKMGVTEMVKKILDTFPVAIWDLDP-GEKNVLLLAIENRQTH  187 (429)
Q Consensus       110 ~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G-~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~-~G~t~LH~A~~~g~~~  187 (429)
                      ..+..+  .++.|.+..   ...+.+|..| .||||+|+..|+.+++++|++++++.   .|. .|+||||+|+.+|+.+
T Consensus       104 ~~g~~~--~v~~Ll~~g---a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~  175 (285)
T 3kea_A          104 DSGNMQ--TVKLFVKKN---WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVD  175 (285)
T ss_dssp             HTTCHH--HHHHHHHHC---GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHH
T ss_pred             HcCCHH--HHHHHHhcC---CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcChHH
Confidence            644332  233333221   1225677788 79999999999999999999997765   234 8999999999999999


Q ss_pred             HHHHHHcCCCccccccccccCCCCcH-HHHHHHcCCCccccc
Q 042589          188 VYNLLRSREELGETIFWQVDNLGNSA-LHLAATYGDHRPWHT  228 (429)
Q Consensus       188 iv~~Ll~~~~~~~~~in~~D~~G~Tp-LHlAa~~g~~~~~~~  228 (429)
                      ++++|++.|+    ++|.+|.+|+|| ||+|+..|+.+++++
T Consensus       176 ~v~~Ll~~ga----d~n~~~~~g~t~~L~~A~~~~~~~~v~~  213 (285)
T 3kea_A          176 MMILLLDYMT----STNTNNSLLFIPDIKLAIDNKDIEMLQA  213 (285)
T ss_dssp             HHHHHHHHHH----HTCTTCCCBCCTTHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHcCC----CCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence            9999999988    899999999998 999999999887763

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.75  E-value=3.2e-18  Score=162.01  Aligned_cols=141  Identities=15%  Similarity=0.109  Sum_probs=103.4

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCC-CCCCCccc------ccccCCCCCCcHHHHHHHcCcH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETP-PDPNTYKK------KNARRSRRKETPILVAAKMGVT  152 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll-~~~~~~~~------~~~~~d~~G~TpLh~Aa~~G~~  152 (429)
                      .+++++|+++|++++ ..+..|.||+|.+...+..+  .++.+ +.+.+...      .....+..|.||||+|+..|+.
T Consensus        85 ~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~--~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T 1wdy_A           85 VKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVK--ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             HHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHH--HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHH--HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence            688889999988888 45666899988776544322  22222 22221111      0112266788999999999999


Q ss_pred             HHHHHHHHhCCCccccCCCCCCcHHHHHHHcCC----HHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          153 EMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQ----THVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       153 eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~----~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++++.|++..+..++..|..|+||||+|+..++    .+++++|++.+.    ++|.+|.+|+||||+|+..|+.++++
T Consensus       162 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~  236 (285)
T 1wdy_A          162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA----DVNVRGERGKTPLILAVEKKHLGLVQ  236 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC----CSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCC----CCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            999988887555567788888999999988888    888888888887    78888888999999998888877655

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.74  E-value=1.5e-18  Score=154.89  Aligned_cols=133  Identities=17%  Similarity=0.063  Sum_probs=91.5

Q ss_pred             HHHHHhC-CCCCCcccccCCCCcccccccCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 042589           83 FDELVDD-RNPHVYKYVYNGREPRISTFGQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILD  160 (429)
Q Consensus        83 v~~Ll~~-~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~  160 (429)
                      +++|+++ +.+++ ..+..|+||+|.++..+..  +.++.|. .+.+    .+..|..|.||||+|+..|+.+++++|++
T Consensus        21 v~~ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   93 (179)
T 3f6q_A           21 VRLWLDNTENDLN-QGDDHGFSPLHWACREGRS--AVVEMLIMRGAR----INVMNRGDDTPLHLAASHGHRDIVQKLLQ   93 (179)
T ss_dssp             HHHHHHCTTSCTT-CCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhcCccccc-ccCCCCCCHHHHHHHcCcH--HHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3555555 33454 2344466666655443222  1122221 1111    13456778999999999999999999998


Q ss_pred             hCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          161 TFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       161 ~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++.+ ++..|..|+||||+|+..|+.+++++|++.|+    +++.+|.+|.||||+|+..++.++++
T Consensus        94 ~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A~~~~~~~~~~  155 (179)
T 3f6q_A           94 YKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGA----LVSICNKYGEMPVDKAKAPLRELLRE  155 (179)
T ss_dssp             TTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSSBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred             cCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CcchhccCCCCcHHHHHHHHHHHHHH
Confidence            8655 46788899999999999999999999998887    78889999999999988877655443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.74  E-value=1.4e-18  Score=155.18  Aligned_cols=154  Identities=17%  Similarity=0.081  Sum_probs=107.7

Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccccCC
Q 042589           33 SDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQD  112 (429)
Q Consensus        33 ~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~  112 (429)
                      +++.+|.+ |+.+.++.++ +...++......+...+.....  ....+++++|+++|++++ ..|..|+||+|.++..+
T Consensus         7 ~L~~Aa~~-G~~~~v~~Ll-~~Gadvn~~d~~g~t~l~~a~~--~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            7 RLIEAAEN-GNKDRVKDLI-ENGADVNASDSDGRTPLHHAAE--NGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHT-TCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHH--TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHc-CCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHH--cCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcC
Confidence            36777766 9999884443 2222221111111111111111  123588999999999999 46667999999887654


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHH
Q 042589          113 VNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLL  192 (429)
Q Consensus       113 ~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~L  192 (429)
                      ..+  .++.|.+...   +.+.+|.+|+||||+||+.|+.++|+.|++++.+ ++.+|.+|+||||+|+.+|+.+++++|
T Consensus        82 ~~~--~v~~Ll~~ga---dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~L  155 (169)
T 4gpm_A           82 HKE--VVKLLISKGA---DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLL  155 (169)
T ss_dssp             CHH--HHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CHH--HHHHHHHCcC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            433  3444433221   2366888999999999999999999999998766 477899999999999999999999999


Q ss_pred             HcCCC
Q 042589          193 RSREE  197 (429)
Q Consensus       193 l~~~~  197 (429)
                      ++.|+
T Consensus       156 l~~GA  160 (169)
T 4gpm_A          156 EKQGG  160 (169)
T ss_dssp             HTC--
T ss_pred             HHCCC
Confidence            99998

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.74  E-value=1.2e-18  Score=152.97  Aligned_cols=89  Identities=18%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNS  212 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~T  212 (429)
                      +.+|.+|+||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+.+|+.+++++|++.++    +++.+|.+|+|
T Consensus        69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t  143 (165)
T 3twr_A           69 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA----DPTKKNRDGNT  143 (165)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCC
T ss_pred             CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCCC
Confidence            34567899999999999999999999988665 47789999999999999999999999999988    89999999999


Q ss_pred             HHHHHHHcCCCcccc
Q 042589          213 ALHLAATYGDHRPWH  227 (429)
Q Consensus       213 pLHlAa~~g~~~~~~  227 (429)
                      |||+|.. |+.++++
T Consensus       144 ~l~~a~~-~~~~i~~  157 (165)
T 3twr_A          144 PLDLVKD-GDTDIQD  157 (165)
T ss_dssp             TGGGSCT-TCHHHHH
T ss_pred             hhHhHhc-CChHHHH
Confidence            9999776 7755544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.74  E-value=1.3e-19  Score=179.81  Aligned_cols=125  Identities=14%  Similarity=0.029  Sum_probs=101.4

Q ss_pred             cccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCc----cccCCCC
Q 042589           97 YVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVA----IWDLDPG  172 (429)
Q Consensus        97 ~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~----~~~~d~~  172 (429)
                      .+..|.||+|.++..+....+.++.|.+...   ..+..|..|+||||+|+..|+.+++++|++++++.    ++..|..
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~  210 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGA---SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ  210 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCC---CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC
Confidence            3445788888776655223444444433211   23567889999999999999999999999987662    5778999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          173 EKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       173 G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      |+||||+|+.+|+.+++++|++.|+    ++|.+|.+|.||||+|+..|+.+++++
T Consensus       211 g~t~L~~A~~~g~~~~v~~Ll~~ga----d~~~~d~~g~tpL~~A~~~g~~~~v~~  262 (364)
T 3ljn_A          211 GNSHLHWAILINWEDVAMRFVEMGI----DVNMEDNEHTVPLYLSVRAAMVLLTKE  262 (364)
T ss_dssp             CCCTTHHHHTTTCHHHHHHHHTTTC----CTTCCCTTSCCHHHHHHHTCCHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHHhChHHHHHH
Confidence            9999999999999999999999998    899999999999999999999888764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.74  E-value=2.6e-18  Score=159.36  Aligned_cols=139  Identities=20%  Similarity=0.129  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      ..+++++|+++|++++ ..+..|+||+|.++..+..  +.++.+.+...   ..+..+..|.||||+|+..|+.+++++|
T Consensus        23 ~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~~~L   96 (237)
T 3b7b_A           23 HVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHL--EAVKYLIKAGA---LVDPKDAEGSTCLHLAAKKGHYEVVQYL   96 (237)
T ss_dssp             CHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCH--HHHHHHHTTTC---CCCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCH--HHHHHHHhCCC---CCCCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence            3689999999999999 4566799999988765433  33333333221   1245678899999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++.++...+..|..|+||||+|+..|+.+++++|++.+.    +++.+|.+|+||||+|+..|+.++++
T Consensus        97 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~~~  161 (237)
T 3b7b_A           97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS----DINIRDNEENICLHWAAFSGCVDIAE  161 (237)
T ss_dssp             HTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             HhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCccCCCCCCHHHHHHHCCCHHHHH
Confidence            999867678889999999999999999999999999998    89999999999999999999977665

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.74  E-value=8.8e-19  Score=165.27  Aligned_cols=136  Identities=14%  Similarity=0.082  Sum_probs=102.0

Q ss_pred             HHHHHHhCCCCCCcc---cccCCCCcccccccC-CccccccccCCCCC-CC-------cccccccCCCCCCcHHHHHHHc
Q 042589           82 VFDELVDDRNPHVYK---YVYNGREPRISTFGQ-DVNAFTARETPPDP-NT-------YKKKNARRSRRKETPILVAAKM  149 (429)
Q Consensus        82 iv~~Ll~~~a~~~~~---~d~~G~~P~~~~~~~-~~~~~~~i~ll~~~-~~-------~~~~~~~~d~~G~TpLh~Aa~~  149 (429)
                      ++++|++++++++..   .|+.|+||+|.++.. .....+.++.|.+. ..       .+...+..|..|+||||+||..
T Consensus        24 ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~  103 (260)
T 3jxi_A           24 LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER  103 (260)
T ss_dssp             HHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHT
T ss_pred             HHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHc
Confidence            456888889888822   125599999977621 12222333333221 11       0111234456899999999999


Q ss_pred             CcHHHHHHHHHhCCCccccCC--------------CCCCcHHHHHHHcCCHHHHHHHHc---CCCccccccccccCCCCc
Q 042589          150 GVTEMVKKILDTFPVAIWDLD--------------PGEKNVLLLAIENRQTHVYNLLRS---REELGETIFWQVDNLGNS  212 (429)
Q Consensus       150 G~~eiv~~Ll~~~~~~~~~~d--------------~~G~t~LH~A~~~g~~~iv~~Ll~---~~~~~~~~in~~D~~G~T  212 (429)
                      |+.++|++|++++.+. +..|              ..|+||||+|+..|+.+++++|++   .++    ++|.+|.+|+|
T Consensus       104 g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga----~~~~~d~~g~T  178 (260)
T 3jxi_A          104 RCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA----DLRRQDSRGNT  178 (260)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC----CTTCCCTTSCC
T ss_pred             CCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC----CCcccCCCCCc
Confidence            9999999999987664 5666              689999999999999999999999   777    89999999999


Q ss_pred             HHHHHHHcCC
Q 042589          213 ALHLAATYGD  222 (429)
Q Consensus       213 pLHlAa~~g~  222 (429)
                      |||+|+..|+
T Consensus       179 pLh~A~~~~~  188 (260)
T 3jxi_A          179 VLHALVAIAD  188 (260)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcc
Confidence            9999999887

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.74  E-value=1.5e-18  Score=166.76  Aligned_cols=179  Identities=13%  Similarity=0.057  Sum_probs=122.5

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTF  109 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~  109 (429)
                      ...|++.+|.. |+.+++..++ +...+.......+...++-....  ...+++++|+++|++++ ..+..|.||+|.+.
T Consensus        73 g~t~L~~A~~~-g~~~~v~~Ll-~~ga~~~~~~~~g~tpL~~A~~~--g~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~  147 (299)
T 1s70_B           73 GLTALHQACID-DNVDMVKFLV-ENGANINQPDNEGWIPLHAAASC--GYLDIAEYLISQGAHVG-AVNSEGDTPLDIAE  147 (299)
T ss_dssp             CCBHHHHHHHT-TCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCC
T ss_pred             CCCHHHHHHHc-CCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHH
Confidence            46788888888 8888773322 21111111111111111111111  13689999999999999 45667999999886


Q ss_pred             cCCccccccccCCC-CCCCc----------------------ccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcc
Q 042589          110 GQDVNAFTARETPP-DPNTY----------------------KKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAI  166 (429)
Q Consensus       110 ~~~~~~~~~i~ll~-~~~~~----------------------~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~  166 (429)
                      ..+...+... ++. .+...                      .......+..|.||||+|+..|+.++++.|++++.+ +
T Consensus       148 ~~~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~  225 (299)
T 1s70_B          148 EEAMEELLQN-EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-V  225 (299)
T ss_dssp             SHHHHHHHHH-HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-T
T ss_pred             hcchHHHHHH-HHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-C
Confidence            5322211100 000 00000                      001123557899999999999999999999988765 5


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHH
Q 042589          167 WDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAAT  219 (429)
Q Consensus       167 ~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~  219 (429)
                      +.+|..|+||||+|+.+|+.+++++|++.|+    +++.+|.+|+||||+|+.
T Consensus       226 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          226 NIKDYDGWTPLHAAAHWGKEEACRILVENLC----DMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCTTTSCCS
T ss_pred             CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHH
Confidence            7789999999999999999999999999998    899999999999999954

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.74  E-value=3.7e-18  Score=135.95  Aligned_cols=85  Identities=29%  Similarity=0.296  Sum_probs=77.8

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHH
Q 042589          138 RKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLA  217 (429)
Q Consensus       138 ~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlA  217 (429)
                      +|+||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.++    +++.+|.+|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCCCHHHHH
Confidence            489999999999999999999998766 57889999999999999999999999999998    8999999999999999


Q ss_pred             HHcCCCcccc
Q 042589          218 ATYGDHRPWH  227 (429)
Q Consensus       218 a~~g~~~~~~  227 (429)
                      +..|+.++++
T Consensus        76 ~~~~~~~~~~   85 (93)
T 1n0q_A           76 ARNGHLEVVK   85 (93)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHcCCHHHHH
Confidence            9999977664

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.74  E-value=3e-18  Score=162.17  Aligned_cols=141  Identities=13%  Similarity=0.035  Sum_probs=113.2

Q ss_pred             HHHHHHHHHhCCCCCCccc---------ccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHc
Q 042589           79 AIQVFDELVDDRNPHVYKY---------VYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKM  149 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~---------d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~  149 (429)
                      ..+++++|+++|++++...         +..|.||+|.+...+..  +.++.+.+...  ...+..|..|+||||+|+..
T Consensus       117 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~~~--~~~~~~~~~g~t~l~~a~~~  192 (285)
T 1wdy_A          117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV--EVLKILLDEMG--ADVNACDNMGRNALIHALLS  192 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH--HHHHHHHHTSC--CCTTCCCTTSCCHHHHHHHC
T ss_pred             CHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH--HHHHHHHHhcC--CCCCccCCCCCCHHHHHHHc
Confidence            3689999999999998321         56699999988764432  22333322101  11255778999999999999


Q ss_pred             Cc----HHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHc-CCCccccccccccCCCCcHHHHHHHcCCCc
Q 042589          150 GV----TEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRS-REELGETIFWQVDNLGNSALHLAATYGDHR  224 (429)
Q Consensus       150 G~----~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~-~~~~~~~~in~~D~~G~TpLHlAa~~g~~~  224 (429)
                      |+    .++++.|++++.+ ++.+|..|+||||+|+..|+.+++++|++ .+.    +++.+|.+|+||||+|+..|+.+
T Consensus       193 ~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~----~~~~~~~~g~t~l~~A~~~~~~~  267 (285)
T 1wdy_A          193 SDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI----EINDTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             SCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC----CTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC----CccccCCCCCcHHHHHHHcCcHH
Confidence            99    9999999988765 47789999999999999999999999999 666    89999999999999999999987


Q ss_pred             cccc
Q 042589          225 PWHT  228 (429)
Q Consensus       225 ~~~~  228 (429)
                      ++++
T Consensus       268 i~~~  271 (285)
T 1wdy_A          268 IAEL  271 (285)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.74  E-value=1.2e-18  Score=167.64  Aligned_cols=173  Identities=10%  Similarity=-0.019  Sum_probs=125.1

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTF  109 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~  109 (429)
                      ...|++.+|.. |+.++++.++ +...+.......+...+......  ...+++++|+++|++++  .++.|.||+|.+.
T Consensus        92 g~t~L~~A~~~-g~~~~v~~Ll-~~ga~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~  165 (285)
T 3d9h_A           92 HVSPLHEACLG-GHLSCVKILL-KHGAQVNGVTADWHTPLFNACVS--GSWDCVNLLLQHGASVQ--PESDLASPIHEAA  165 (285)
T ss_dssp             CCCHHHHHHHT-TCHHHHHHHH-HTTCCSSCCCTTCCCHHHHHHHH--TCHHHHHHHHHTTCCSS--CSCTTSCHHHHHH
T ss_pred             CCCHHHHHHHC-CcHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHc--CHHHHHHHHHHCCCCCC--CCCCCCCHHHHHH
Confidence            56788888887 8888773322 21111111111111111111111  13689999999999999  7888999999887


Q ss_pred             cCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHH
Q 042589          110 GQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVY  189 (429)
Q Consensus       110 ~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv  189 (429)
                      ..+..+  .++.|.+...   ..+.+|..|.||||+|+..|+.++++.|++.+.+. + .|..|+||||+|+..|+.+++
T Consensus       166 ~~g~~~--~v~~Ll~~g~---~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v  238 (285)
T 3d9h_A          166 RRGHVE--CVNSLIAYGG---NIDHKISHLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELA  238 (285)
T ss_dssp             HHTCHH--HHHHHHHTTC---CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHH
T ss_pred             HcCCHH--HHHHHHHCCC---CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHH
Confidence            644332  2333322211   12567789999999999999999999999987664 3 488999999999999999999


Q ss_pred             HHHHcCCCccccccccccCCCCcHHHHHHH
Q 042589          190 NLLRSREELGETIFWQVDNLGNSALHLAAT  219 (429)
Q Consensus       190 ~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~  219 (429)
                      ++|++.|+    +++.+|.+|+||||+|+.
T Consensus       239 ~~Ll~~ga----d~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          239 CLLMDFGA----DTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             HHHHHTTC----CTTCCCTTSCCGGGGSCT
T ss_pred             HHHHHCCC----CCCCcCCCCCCHHHHhcC
Confidence            99999998    899999999999999993

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.74  E-value=2.9e-18  Score=143.60  Aligned_cols=98  Identities=18%  Similarity=0.097  Sum_probs=87.1

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|++++                                       .+|..|+||||+|+..|+.+++++|+
T Consensus        20 ~~~v~~ll~~~~~~~---------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll   60 (123)
T 3aaa_C           20 LDEVKDYVAKGEDVN---------------------------------------RTLEGGRKPLHYAADCGQLEILEFLL   60 (123)
T ss_dssp             HHHHHHHHHTTCCTT---------------------------------------SCCTTSSCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcC---------------------------------------ccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            467789999998887                                       24567999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcC
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYG  221 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g  221 (429)
                      +.+.+ ++.+|..|+||||+|+..|+.+++++|++.++    +++.+|.+|.||||+|+..+
T Consensus        61 ~~g~~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           61 LKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSKGA----DKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             TTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHCCCHH
T ss_pred             HcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHhCCHH
Confidence            88666 57789999999999999999999999999998    89999999999999995443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.74  E-value=2.9e-18  Score=174.12  Aligned_cols=137  Identities=14%  Similarity=0.071  Sum_probs=91.0

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|++.|++++ ..+..|.||+|.+...+..+  .++.|.+...   ..+..+..|.||||+|++.|+.++++.|+
T Consensus       225 ~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~--~v~~Ll~~~~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  298 (437)
T 1n11_A          225 VEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGHAE--MVALLLSKQA---NGNLGNKSGLTPLHLVAQEGHVPVADVLI  298 (437)
T ss_dssp             HHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHH--HHHHHHTTTC---CTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHCCCHH--HHHHHHhcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            466777777777766 23445777777665433322  2222222111   11445667778888888888888887777


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +++.+ ++.+|..|+||||+|+.+|+.+++++|++.++    ++|.+|..|+||||+|+..|+.++++
T Consensus       299 ~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----d~n~~~~~g~t~L~~A~~~g~~~iv~  361 (437)
T 1n11_A          299 KHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQA----DVNAKTKLGYSPLHQAAQQGHTDIVT  361 (437)
T ss_dssp             HHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             hCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC----CCCCCCCCCCCHHHHHHHCChHHHHH
Confidence            77544 45667778888888888888888888887776    77777878888888888877776665

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.74  E-value=1.3e-18  Score=161.82  Aligned_cols=134  Identities=16%  Similarity=0.055  Sum_probs=106.5

Q ss_pred             HHHHhCC----CCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           84 DELVDDR----NPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        84 ~~Ll~~~----a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      ++|++++    +++| ..+..|+||+|.++..+.  .+.++.|.+...   ..+.+|..|+||||+|+..|+.++++.|+
T Consensus        25 ~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   98 (236)
T 1ikn_D           25 MEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQ--PEIAEALLGAGC---DPELRDFRGNTPLHLACEQGCLASVGVLT   98 (236)
T ss_dssp             SCCCC-----CCCCC-CCCTTCCCHHHHHHHTTC--HHHHHCCCSCCC---CSCCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHhhccHHHhh-ccCCCCCCHHHHHHHcCC--HHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4455544    4677 355569999999876543  334555544322   22567789999999999999999999999


Q ss_pred             HhCCC-----ccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccC-CCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPV-----AIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDN-LGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~-----~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~-~G~TpLHlAa~~g~~~~~~  227 (429)
                      +.+++     .....|..|+||||+|+.+|+.+++++|++.|+    +++.+|. +|+||||+|+..|+.++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~~g~tpL~~A~~~~~~~~v~  168 (236)
T 1ikn_D           99 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA----DVNAQEPCNGRTALHLAVDLQNPDLVS  168 (236)
T ss_dssp             HSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC----CTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             hcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            98743     256678899999999999999999999999998    8999998 9999999999999988776

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.73  E-value=2.9e-18  Score=174.08  Aligned_cols=138  Identities=16%  Similarity=0.065  Sum_probs=113.8

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      ..+++++|++++++++ ..+..|+||+|.+...+...  .++.|.+..   ...+.+|..|+||||+|+..|+.++|++|
T Consensus       257 ~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~--~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  330 (437)
T 1n11_A          257 HAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEGHVP--VADVLIKHG---VMVDATTRMGYTPLHVASHYGNIKLVKFL  330 (437)
T ss_dssp             CHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTCHH--HHHHHHHHT---CCTTCCCSSCCCHHHHHHHSSCSHHHHHH
T ss_pred             CHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHH--HHHHHHhCC---ccCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence            3689999999999999 35567999999887644332  233232211   11255778999999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++++.+ ++.+|..|+||||+|+.+|+.+++++|++.|+    +++.+|.+|+||||+|+..|+.++++
T Consensus       331 l~~gad-~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga----~~~~~~~~g~t~l~~A~~~g~~~~~~  394 (437)
T 1n11_A          331 LQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA----SPNEVSSDGTTPLAIAKRLGYISVTD  394 (437)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             HhcCCC-CCCCCCCCCCHHHHHHHCChHHHHHHHHHCcC----CCCCCCCCCCCHHHHHHHcCcHHHHH
Confidence            998766 47789999999999999999999999999998    89999999999999999999966554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.73  E-value=2.2e-18  Score=163.49  Aligned_cols=177  Identities=13%  Similarity=-0.014  Sum_probs=111.7

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCC-----------------
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNP-----------------   92 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~-----------------   92 (429)
                      ...|++.+|.. |+.+.++.++ +...........+...++-....  ...+++++|++++++                 
T Consensus        45 g~t~L~~A~~~-g~~~~v~~Ll-~~ga~~~~~~~~g~tpL~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  120 (282)
T 1oy3_D           45 GQTALHLAAIL-GEASTVEKLY-AAGAGVLVAERGGHTALHLACRV--RAHTCACVLLQPRPSHPRDASDTYLTQSQDCT  120 (282)
T ss_dssp             SCCHHHHHHHH-TCHHHHHHHH-HTTCCSSCCCTTSCCHHHHHTTT--TCHHHHHHHSSSCCSSCCCC------------
T ss_pred             CCCHHHHHHHc-CCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHc--CCcchhHhhhccCCCCchhhHHHHhhcccccC
Confidence            56788888887 8888773332 21111111111111112211111  246899999998876                 


Q ss_pred             ------------------------------CCcccccCCCCcccccccCCccccccccCCC-CCCCcccccccCC-CCCC
Q 042589           93 ------------------------------HVYKYVYNGREPRISTFGQDVNAFTARETPP-DPNTYKKKNARRS-RRKE  140 (429)
Q Consensus        93 ------------------------------~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d-~~G~  140 (429)
                                                    ++ ..+..|+||+|.++..+..  +.++.|. .+..    .+..+ ..|+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~----~~~~~~~~g~  193 (282)
T 1oy3_D          121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTPLHVAVIHKDA--EMVRLLRDAGAD----LNKPEPTCGR  193 (282)
T ss_dssp             -----------------------CCCGGGGTT-CCCTTSCCHHHHHHHTTCH--HHHHHHHHHTCC----TTCCCTTTCC
T ss_pred             cchhcchhhhccccccchhhhhhhhhhhhcCC-CcCCCCcCHHHHHHHcCCH--HHHHHHHHcCCC----CCCCCCCCCc
Confidence                                          44 2455699999988764432  2233332 2222    13344 3599


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHc
Q 042589          141 TPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATY  220 (429)
Q Consensus       141 TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~  220 (429)
                      ||||+|++.|+.+++++|++++.+ ++.+|..|+||||+|+.+|+.+++++|++.|+    +++.+|.+|.|||++|...
T Consensus       194 tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          194 TPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGA----PEPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC----CCCCCC-------------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHHcCC----CcCcCCCcccccccccCCc
Confidence            999999999999999999998766 57889999999999999999999999999999    8999999999999999887


Q ss_pred             CC
Q 042589          221 GD  222 (429)
Q Consensus       221 g~  222 (429)
                      .+
T Consensus       269 ~~  270 (282)
T 1oy3_D          269 SD  270 (282)
T ss_dssp             --
T ss_pred             cc
Confidence            65

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.73  E-value=1.2e-18  Score=165.96  Aligned_cols=136  Identities=13%  Similarity=0.048  Sum_probs=97.4

Q ss_pred             HHHHHhCCCCCCc---ccccCCCCcccccccC-CccccccccCCCCC-CCc-------ccccccCCCCCCcHHHHHHHcC
Q 042589           83 FDELVDDRNPHVY---KYVYNGREPRISTFGQ-DVNAFTARETPPDP-NTY-------KKKNARRSRRKETPILVAAKMG  150 (429)
Q Consensus        83 v~~Ll~~~a~~~~---~~d~~G~~P~~~~~~~-~~~~~~~i~ll~~~-~~~-------~~~~~~~d~~G~TpLh~Aa~~G  150 (429)
                      ++++.+.+++++.   ..|..|+||+|.++.. .....+.++.|.+. ...       +......|..|+||||+|+..|
T Consensus        33 l~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g  112 (273)
T 2pnn_A           33 LPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR  112 (273)
T ss_dssp             HHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTT
T ss_pred             HHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcC
Confidence            3455566666541   1255688888877642 11222223222221 100       0001224568999999999999


Q ss_pred             cHHHHHHHHHhCCCccccCCC--------------CCCcHHHHHHHcCCHHHHHHHHc---CCCccccccccccCCCCcH
Q 042589          151 VTEMVKKILDTFPVAIWDLDP--------------GEKNVLLLAIENRQTHVYNLLRS---REELGETIFWQVDNLGNSA  213 (429)
Q Consensus       151 ~~eiv~~Ll~~~~~~~~~~d~--------------~G~t~LH~A~~~g~~~iv~~Ll~---~~~~~~~~in~~D~~G~Tp  213 (429)
                      +.++|++|++++++. +..|.              .|+||||+|+.+|+.+++++|++   .++    ++|.+|.+|+||
T Consensus       113 ~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga----d~~~~d~~g~tp  187 (273)
T 2pnn_A          113 NMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA----DISARDSVGNTV  187 (273)
T ss_dssp             CHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC----CTTCCCTTSCCH
T ss_pred             CHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC----CceeeCCCCCcH
Confidence            999999999987664 55665              79999999999999999999999   777    899999999999


Q ss_pred             HHHHHHcCCC
Q 042589          214 LHLAATYGDH  223 (429)
Q Consensus       214 LHlAa~~g~~  223 (429)
                      ||+|+..|+.
T Consensus       188 Lh~A~~~~~~  197 (273)
T 2pnn_A          188 LHALVEVADN  197 (273)
T ss_dssp             HHHHHHHCCS
T ss_pred             HHHHHHccCc
Confidence            9999999883

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.73  E-value=1.2e-17  Score=145.95  Aligned_cols=125  Identities=14%  Similarity=-0.014  Sum_probs=85.1

Q ss_pred             HHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCc-HHHHHHHcCcHHHHHHHH
Q 042589           81 QVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKET-PILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        81 ~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~T-pLh~Aa~~G~~eiv~~Ll  159 (429)
                      +++++|+++|++++ ..+..|+||+|.+..   ...+.++.|.+...   ..+.+|..|+| |||+|++.|+.+++++|+
T Consensus        26 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~---~~~~~v~~Ll~~g~---~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll   98 (156)
T 1bi7_B           26 EEVRALLEAGANPN-APNSYGRRPIQVMMM---GSARVAELLLLHGA---EPNCADPATLTRPVHDAAREGFLDTLVVLH   98 (156)
T ss_dssp             HHHHHHHTTTCCTT-CCCSSSCCTTTSSCT---TCHHHHHHHHTTTC---CCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCC-CCCCCCCCHHHHHHc---CCHHHHHHHHHcCC---CCCCcCCCCCcHHHHHHHHCCCHHHHHHHH
Confidence            45689999999999 455679999998743   23334444433221   22567788998 999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHH
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLA  217 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlA  217 (429)
                      +++.+ ++.+|..|+||||+|+..|+.+++++|++.|+    +++.+|..|.||.+-+
T Consensus        99 ~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           99 RAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAG----GTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred             HcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC----CCCccCcCcCcccccC
Confidence            98765 47789999999999999999999999999998    8999999999998744

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.72  E-value=3.4e-18  Score=154.54  Aligned_cols=133  Identities=17%  Similarity=0.140  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhCCC-CCCcccccCCCCcccccccCCccccccccCCCC-CCCcccccccCCCCCCcHHHHHHHcCcHHHHH
Q 042589           79 AIQVFDELVDDRN-PHVYKYVYNGREPRISTFGQDVNAFTARETPPD-PNTYKKKNARRSRRKETPILVAAKMGVTEMVK  156 (429)
Q Consensus        79 a~~iv~~Ll~~~a-~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~-~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~  156 (429)
                      ..+.++.|++++. +++ ..|..|.||+|.++..+.  .+.++.|.+ +.+    .+..|..|.||||+|+..|+.++++
T Consensus        17 ~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~~   89 (201)
T 3hra_A           17 DTKKVKEILQDTTYQVD-EVDTEGNTPLNIAVHNND--IEIAKALIDRGAD----INLQNSISDSPYLYAGAQGRTEILA   89 (201)
T ss_dssp             CHHHHHHHHTCTTCCTT-CCCTTSCCHHHHHHHHTC--HHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHcCCCCCC-CCCCCCCCHHHHHHHcCC--HHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            3578888888877 888 456679999998876443  233333332 222    2557788999999999999999999


Q ss_pred             HHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCC-CccccccccccCCCCcHHHHHHHcCC
Q 042589          157 KILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSRE-ELGETIFWQVDNLGNSALHLAATYGD  222 (429)
Q Consensus       157 ~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~-~~~~~~in~~D~~G~TpLHlAa~~g~  222 (429)
                      .|++.++...+..|..|+||||+|+..|+.+++++|++.+ .    +++.+|.+|+||||+|+..++
T Consensus        90 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~~g~t~L~~A~~~~~  152 (201)
T 3hra_A           90 YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE----DIDFQNDFGYTALIEAVGLRE  152 (201)
T ss_dssp             HHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCC----CTTCCCTTSCCHHHHHHHSSC
T ss_pred             HHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CcCCCCCCCCCHHHHHHHhcc
Confidence            9998777667888999999999999999999999999998 5    899999999999999999887

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.72  E-value=5.9e-18  Score=144.26  Aligned_cols=88  Identities=16%  Similarity=0.096  Sum_probs=78.1

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSAL  214 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpL  214 (429)
                      +|..|+||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|++.++    +++.+|.+|+|||
T Consensus        39 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl  113 (137)
T 3c5r_A           39 KDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA----SRNAVNIFGLRPV  113 (137)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCGG
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCHH
Confidence            456799999999999999999999988655 57789999999999999999999999999988    8999999999999


Q ss_pred             HHHHHcCCCcccc
Q 042589          215 HLAATYGDHRPWH  227 (429)
Q Consensus       215 HlAa~~g~~~~~~  227 (429)
                      |+|+..+..+++.
T Consensus       114 ~~A~~~~~~~~l~  126 (137)
T 3c5r_A          114 DYTDDESMKSLLL  126 (137)
T ss_dssp             GGCCCHHHHHHHS
T ss_pred             HHHhhccHHHHHh
Confidence            9998877655544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.71  E-value=2e-17  Score=155.68  Aligned_cols=117  Identities=18%  Similarity=0.113  Sum_probs=93.4

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|++++ ..+..+..|                         .+.+..+..|+||||+|+..|+.+++++|+
T Consensus       103 ~~~v~~Ll~~ga~~~-~~~~~~~~~-------------------------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  156 (256)
T 2etb_A          103 LQCVKLLVENGADVH-LRACGRFFQ-------------------------KHQGTCFYFGELPLSLAACTKQWDVVTYLL  156 (256)
T ss_dssp             HHHHHHHHHTTCCTT-CCCCSGGGS-------------------------CCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCC-ccccccccc-------------------------ccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            678888888888887 111111111                         011223446999999999999999999999


Q ss_pred             H---hCCCccccCCCCCCcHHHHHHH--cCCHH-------HHHHHHcCCCcccccc-------ccccCCCCcHHHHHHHc
Q 042589          160 D---TFPVAIWDLDPGEKNVLLLAIE--NRQTH-------VYNLLRSREELGETIF-------WQVDNLGNSALHLAATY  220 (429)
Q Consensus       160 ~---~~~~~~~~~d~~G~t~LH~A~~--~g~~~-------iv~~Ll~~~~~~~~~i-------n~~D~~G~TpLHlAa~~  220 (429)
                      +   ++.+ ++.+|.+|+||||+|+.  +++.+       ++++|++.|+    ++       +.+|.+|+||||+|+..
T Consensus       157 ~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga----~~~~~~~~~~~~d~~g~tpL~~A~~~  231 (256)
T 2etb_A          157 ENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA----RLCPTVQLEEISNHQGLTPLKLAAKE  231 (256)
T ss_dssp             HCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH----HHSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             hccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC----CcccccccccccCCCCCCHHHHHHHh
Confidence            9   5444 67889999999999999  88988       9999999988    77       89999999999999999


Q ss_pred             CCCcccc
Q 042589          221 GDHRPWH  227 (429)
Q Consensus       221 g~~~~~~  227 (429)
                      |+.++++
T Consensus       232 g~~~~v~  238 (256)
T 2etb_A          232 GKIEIFR  238 (256)
T ss_dssp             TCHHHHH
T ss_pred             CCHHHHH
Confidence            9977654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.71  E-value=1.2e-17  Score=163.20  Aligned_cols=81  Identities=17%  Similarity=0.099  Sum_probs=75.5

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNS  212 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~T  212 (429)
                      +.+|..|+||||+|++.|+.+++++|++++.+ ++.+|..|+||||+|+.+|+.+++++|++.|+    +++.+|.+|+|
T Consensus       241 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----d~~~~~~~g~t  315 (351)
T 3utm_A          241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGS----DPSIISLQGFT  315 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCC
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC----CCCCcCCCCCC
Confidence            56788999999999999999999999988765 57889999999999999999999999999998    89999999999


Q ss_pred             HHHHHH
Q 042589          213 ALHLAA  218 (429)
Q Consensus       213 pLHlAa  218 (429)
                      |||+|.
T Consensus       316 al~~a~  321 (351)
T 3utm_A          316 AAQMGN  321 (351)
T ss_dssp             HHHHSC
T ss_pred             hhhhhh
Confidence            999983

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.71  E-value=3.9e-17  Score=135.74  Aligned_cols=88  Identities=28%  Similarity=0.308  Sum_probs=80.3

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSAL  214 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpL  214 (429)
                      .|..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.+.    +++.+|.+|+|||
T Consensus        31 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~l  105 (126)
T 1n0r_A           31 KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPL  105 (126)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHH
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHcChHHHHHHHHHcCC----CCcccCCCCCCHH
Confidence            356799999999999999999999988665 47789999999999999999999999999988    8999999999999


Q ss_pred             HHHHHcCCCcccc
Q 042589          215 HLAATYGDHRPWH  227 (429)
Q Consensus       215 HlAa~~g~~~~~~  227 (429)
                      |+|+..|+.++++
T Consensus       106 ~~A~~~~~~~~~~  118 (126)
T 1n0r_A          106 HLAARNGHLEVVK  118 (126)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHcCcHHHHH
Confidence            9999999876654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.70  E-value=5.6e-17  Score=143.34  Aligned_cols=119  Identities=18%  Similarity=0.068  Sum_probs=95.4

Q ss_pred             CCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHH
Q 042589          101 GREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLA  180 (429)
Q Consensus       101 G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A  180 (429)
                      +++|+|.++..+.  .+.++.+.+....  ..+..|..|+||||+|+..|+.+++++|++++.+ .+..|..|+||||+|
T Consensus         2 ~~~~L~~A~~~g~--~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A   76 (172)
T 3v30_A            2 DSLSIHQLAAQGE--LDQLKEHLRKGDN--LVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLA   76 (172)
T ss_dssp             --CCHHHHHHTTC--HHHHHHHHTTCSG--GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHH
T ss_pred             chhhHHHHHHcCC--HHHHHHHHHcCcc--cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHH
Confidence            4678887765332  2223233222221  1266788999999999999999999999998766 477899999999999


Q ss_pred             HHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          181 IENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       181 ~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      +..|+.+++++|++.+.    +++.+|.+|+||||+|+..|+.++++.
T Consensus        77 ~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~  120 (172)
T 3v30_A           77 STGGYTDIVGLLLERDV----DINIYDWNGGTPLLYAVRGNHVKCVEA  120 (172)
T ss_dssp             HHTTCHHHHHHHHTTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHCCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999988    899999999999999999999887763

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.69  E-value=7.4e-17  Score=152.00  Aligned_cols=118  Identities=20%  Similarity=0.158  Sum_probs=93.5

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|++++  ..+.+..                  +.     ....+..+..|+||||+|+..|+.+++++|+
T Consensus       106 ~~~v~~Ll~~ga~~~--~~~~~~~------------------~~-----~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A          106 KHYVELLVEKGADVH--AQARGRF------------------FQ-----PKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HHHHHHHHHTTCCTT--CCCEECC------------------CS-----SSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcC--ccccccc------------------cC-----cccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            688999999999888  2211100                  00     0001233467999999999999999999999


Q ss_pred             H---hCCCccccCCCCCCcHHHHHHHcCC---------HHHHHHHHcCCCcccccc-------ccccCCCCcHHHHHHHc
Q 042589          160 D---TFPVAIWDLDPGEKNVLLLAIENRQ---------THVYNLLRSREELGETIF-------WQVDNLGNSALHLAATY  220 (429)
Q Consensus       160 ~---~~~~~~~~~d~~G~t~LH~A~~~g~---------~~iv~~Ll~~~~~~~~~i-------n~~D~~G~TpLHlAa~~  220 (429)
                      +   ++.+ ++.+|..|+||||+|+..++         .+++++|++.|+    ++       +.+|.+|+||||+|+..
T Consensus       161 ~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga----~~~~~~~~~~~~d~~g~tpL~~A~~~  235 (260)
T 3jxi_A          161 ENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA----KLFPDTNLEALLNNDGLSPLMMAAKT  235 (260)
T ss_dssp             HCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH----HHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             hccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc----ccccccchhhcccCCCCCHHHHHHHc
Confidence            9   5444 57889999999999999888         799999999987    66       78999999999999999


Q ss_pred             CCCcccc
Q 042589          221 GDHRPWH  227 (429)
Q Consensus       221 g~~~~~~  227 (429)
                      |+.++++
T Consensus       236 g~~~~v~  242 (260)
T 3jxi_A          236 GKIGIFQ  242 (260)
T ss_dssp             TCHHHHH
T ss_pred             CCHHHHH
Confidence            9977654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.69  E-value=1.2e-17  Score=166.87  Aligned_cols=142  Identities=12%  Similarity=0.001  Sum_probs=113.8

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcC---cHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMG---VTEMVK  156 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G---~~eiv~  156 (429)
                      .+++++|+++|++++ ..+..|+||+|.++..+..  +.++.|.+........+..|..|.||||+|+..|   +.++++
T Consensus       179 ~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~  255 (373)
T 2fo1_E          179 RRLVAYLMKAGADPT-IYNKSERSALHQAAANRDF--GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK  255 (373)
T ss_dssp             HHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCH--HHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHH
T ss_pred             HHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCH--HHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHH
Confidence            689999999999999 4566799999988764432  3344444332111233667889999999999998   899999


Q ss_pred             HHHHhCCCcc-------ccCCCCCCcHHHHHHHcCCHHHHHHHHcCC-CccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          157 KILDTFPVAI-------WDLDPGEKNVLLLAIENRQTHVYNLLRSRE-ELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       157 ~Ll~~~~~~~-------~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~-~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      .|++++.+..       ...|..|+||||+|+..|+.+++++|++.+ .    ++|.+|.+|+||||+|+..|+.+++++
T Consensus       256 ~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~----~~n~~d~~g~TpL~~A~~~g~~~iv~~  331 (373)
T 2fo1_E          256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS----NKDKQDEDGKTPIMLAAQEGRIEVVMY  331 (373)
T ss_dssp             HHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC----CTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC----CccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999976542       135779999999999999999999999876 5    899999999999999999999887763

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.69  E-value=9.7e-17  Score=143.00  Aligned_cols=119  Identities=16%  Similarity=0.137  Sum_probs=93.2

Q ss_pred             CCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHH
Q 042589          100 NGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLL  179 (429)
Q Consensus       100 ~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~  179 (429)
                      ++.+|++.++..+..  +.++.+.+....  ..+..|..|+||||+|+..|+.+++++|++++.+ ++.+|..|+||||+
T Consensus         4 ~~~~~l~~A~~~g~~--~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   78 (179)
T 3f6q_A            4 EFMDDIFTQCREGNA--VAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHL   78 (179)
T ss_dssp             ---CCHHHHHHHTCH--HHHHHHHHCTTS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred             HHHHHHHHHHHcCCH--HHHHHHHhcCcc--cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHH
Confidence            356777766543222  222222221111  1256788999999999999999999999998765 57789999999999


Q ss_pred             HHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          180 AIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       180 A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |+..|+.+++++|++.++    ++|.+|.+|+||||+|+..|+.++++
T Consensus        79 A~~~~~~~~v~~Ll~~g~----~~~~~d~~g~t~L~~A~~~~~~~~v~  122 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKA----DINAVNEHGNVPLHYACFWGQDQVAE  122 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCC----CCCccCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999998    89999999999999999999987766

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.69  E-value=3.7e-17  Score=150.92  Aligned_cols=137  Identities=15%  Similarity=-0.005  Sum_probs=81.2

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCC-CCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPD-PNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~-~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      .+++++|+++|++++...+..|.||+|.++..+..  +.++.+.+ +..    .+..+..|.||||+|+..|+.++++.|
T Consensus        55 ~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~--~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~~~L  128 (240)
T 3eu9_A           55 IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL--SMVVQLMKYGAD----PSLIDGEGCSCIHLAAQFGHTSIVAYL  128 (240)
T ss_dssp             HHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH--HHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH--HHHHHHHHcCCC----CcccCCCCCCHHHHHHHcCHHHHHHHH
Confidence            56777777777766632333377777766543322  22222222 111    133455677777777777777777777


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCC-HHHHHHHHcCCCccccccccccC-CCCcHHHHHHHcCCCcccc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQ-THVYNLLRSREELGETIFWQVDN-LGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~-~~iv~~Ll~~~~~~~~~in~~D~-~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++++.+ .+..|..|+||||+|+..++ .+++++|++.+.    +++..|. .|+||||+|+..|+.++++
T Consensus       129 l~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~  194 (240)
T 3eu9_A          129 IAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV----SVNLGDKYHKNTALHWAVLAGNTTVIS  194 (240)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTC----CTTCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred             HhcCCC-ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCC----CcchhhccCCCcHHHHHHHcCCHHHHH
Confidence            766544 35566667777777765544 566666666665    5666665 6667777777776666554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.69  E-value=1e-16  Score=140.65  Aligned_cols=89  Identities=22%  Similarity=0.148  Sum_probs=81.7

Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcH
Q 042589          134 RRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSA  213 (429)
Q Consensus       134 ~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~Tp  213 (429)
                      ..+..|+||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|++.+.    ++|.+|.+|+||
T Consensus        37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~  111 (165)
T 3twr_A           37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA----VVNVADLWKFTP  111 (165)
T ss_dssp             CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTCCCH
T ss_pred             ccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCC----CCCCcCCCCCCH
Confidence            3456799999999999999999999998766 57789999999999999999999999999998    899999999999


Q ss_pred             HHHHHHcCCCcccc
Q 042589          214 LHLAATYGDHRPWH  227 (429)
Q Consensus       214 LHlAa~~g~~~~~~  227 (429)
                      ||+|+..|+.++++
T Consensus       112 L~~A~~~~~~~~v~  125 (165)
T 3twr_A          112 LHEAAAKGKYEICK  125 (165)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            99999999977665

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.68  E-value=1e-16  Score=152.51  Aligned_cols=118  Identities=23%  Similarity=0.161  Sum_probs=93.7

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|++++  ..+.+..   ..                    ....+..+..|+||||+|+..|+.+++++|+
T Consensus       114 ~~~v~~Ll~~ga~~~--~~~~~~~---~~--------------------~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  168 (273)
T 2pnn_A          114 MTLVTLLVENGADVQ--AAANGDF---FK--------------------KTKGRPGFYFGELPLSLAACTNQLAIVKFLL  168 (273)
T ss_dssp             HHHHHHHHHTTCCTT--CCBCSGG---GS--------------------SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCCcC--ccccccc---cc--------------------cccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            688889999988888  2221110   00                    0011334568999999999999999999999


Q ss_pred             H---hCCCccccCCCCCCcHHHHHHHcCC---------HHHHHHHHcCCCccccccc-------cccCCCCcHHHHHHHc
Q 042589          160 D---TFPVAIWDLDPGEKNVLLLAIENRQ---------THVYNLLRSREELGETIFW-------QVDNLGNSALHLAATY  220 (429)
Q Consensus       160 ~---~~~~~~~~~d~~G~t~LH~A~~~g~---------~~iv~~Ll~~~~~~~~~in-------~~D~~G~TpLHlAa~~  220 (429)
                      +   .+. .++.+|.+|+||||+|+..|+         .+++++|++.|+    ++|       .+|.+|+||||+|+..
T Consensus       169 ~~~~~ga-d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga----~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          169 QNSWQPA-DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA----KLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             HCSSCCC-CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH----HHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             hcccCCC-CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh----hcccccccccccCCCCCCHHHHHHHh
Confidence            9   544 467889999999999999998         899999999987    665       5999999999999999


Q ss_pred             CCCcccc
Q 042589          221 GDHRPWH  227 (429)
Q Consensus       221 g~~~~~~  227 (429)
                      |+.++++
T Consensus       244 g~~~iv~  250 (273)
T 2pnn_A          244 GKIGVLA  250 (273)
T ss_dssp             TCHHHHH
T ss_pred             ChHHHHH
Confidence            9977765

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.68  E-value=9.6e-17  Score=143.96  Aligned_cols=86  Identities=21%  Similarity=0.149  Sum_probs=78.1

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCC-CCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLD-PGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSA  213 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d-~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~Tp  213 (429)
                      +|..|+||||+|+..|+.+++++|++++.+. +.+| ..|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||
T Consensus        72 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tp  146 (183)
T 3deo_A           72 VDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGA----DIEVEDERGLTA  146 (183)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTC----CTTCCCTTSCCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCC----CCcCCCCCCCCH
Confidence            4568999999999999999999999987664 5566 899999999999999999999999998    899999999999


Q ss_pred             HHHHHHcCCCcc
Q 042589          214 LHLAATYGDHRP  225 (429)
Q Consensus       214 LHlAa~~g~~~~  225 (429)
                      ||+|+..++.+.
T Consensus       147 l~~A~~~~~~~~  158 (183)
T 3deo_A          147 LELAREILKTTP  158 (183)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHhccCcc
Confidence            999999887554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.68  E-value=3.5e-17  Score=151.03  Aligned_cols=105  Identities=12%  Similarity=0.053  Sum_probs=94.2

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|++++                                       .+|..|+||||+||..|+.++|++|+
T Consensus        86 ~~~v~~Ll~~g~~~~---------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll  126 (222)
T 3ehr_A           86 LSWLRECLDNRVGVN---------------------------------------GLDKAGSTALYWACHGGHKDIVEMLF  126 (222)
T ss_dssp             HHHHHHHHHTTCCTT---------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHHhCCCCcc---------------------------------------ccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            577899999998887                                       24568999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +..+..++.+|..|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|+..|+.++++
T Consensus       127 ~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~~l~  190 (222)
T 3ehr_A          127 TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA----RTDLRNIEKKLAFDMATNAACASLLK  190 (222)
T ss_dssp             TSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC----CSCCCCTTSCCHHHHCCSHHHHHHHC
T ss_pred             cCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCccccCCCCCHHHHhcchhHHHHHH
Confidence            88455568899999999999999999999999999998    89999999999999999988876665

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.67  E-value=3e-17  Score=147.83  Aligned_cols=121  Identities=16%  Similarity=0.095  Sum_probs=99.5

Q ss_pred             cccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcH
Q 042589           97 YVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNV  176 (429)
Q Consensus        97 ~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~  176 (429)
                      .|..|+||+|.++..+..+  .++.+.+..   ...+..|..|+||||+|+..|+.+++++|++++++ ++..|..|+||
T Consensus        31 ~d~~g~t~L~~A~~~g~~~--~v~~Ll~~~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~  104 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMEN--AIDKLVENF---DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTP  104 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGG--GHHHHHHHH---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCH
T ss_pred             cCCCCCCHHHHHHHcCCHH--HHHHHHHhc---cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcH
Confidence            4667999999887644322  232222211   12255678899999999999999999999999766 47789999999


Q ss_pred             HHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          177 LLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       177 LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ||+|+..|+.+++++|++.++    +++.+|.+|+||||+|+..|+.++++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~  151 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGA----NVNDRNLEGETPLIVASKYGRSEIVK  151 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC----CSSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999998    89999999999999999999987766

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.67  E-value=2.3e-16  Score=151.86  Aligned_cols=91  Identities=12%  Similarity=0.073  Sum_probs=83.2

Q ss_pred             ccCCCCCCcHHHHHHHc---CcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCC
Q 042589          133 ARRSRRKETPILVAAKM---GVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNL  209 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~---G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~  209 (429)
                      +..|..|+||||+||..   |+.+++++|++++.+ ++.+|..|+||||+|+.+|+.+++++|++.|+    ++|.+|.+
T Consensus       163 ~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~  237 (278)
T 1dcq_A          163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTDNAECLKLLLRGKA----SIEIANES  237 (278)
T ss_dssp             SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTT
T ss_pred             cccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCccCC
Confidence            34567899999999999   999999999999766 57889999999999999999999999999998    89999999


Q ss_pred             CCcHHHHHHHcCCCccccc
Q 042589          210 GNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       210 G~TpLHlAa~~g~~~~~~~  228 (429)
                      |.||||+|+..|+.+++++
T Consensus       238 g~tpL~~A~~~~~~~~v~~  256 (278)
T 1dcq_A          238 GETPLDIAKRLKHEHCEEL  256 (278)
T ss_dssp             SCCHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHH
Confidence            9999999999999877653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.67  E-value=1.7e-16  Score=155.48  Aligned_cols=182  Identities=15%  Similarity=0.081  Sum_probs=106.9

Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHh----cCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCc-------------
Q 042589           33 SDYVKCFLKGIIDLVQEIELNVIWYAIY----AGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVY-------------   95 (429)
Q Consensus        33 ~~y~~c~~~g~~~~~~~~l~~~~~~~~~----~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~-------------   95 (429)
                      +++.||.+ |++++++.+| +...++..    .|+..+   +-....  -..++|++|+++|++++.             
T Consensus        28 ~L~~Av~~-g~~~~V~~LL-~~Gadvn~~~~~~g~TpL---h~A~~~--g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           28 LLIKAVQN-EDVDLVQQLL-EGGANVNFQEEEGGWTPL---HNAVQM--SREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHT-TCHHHHHHHH-HHTCCTTCCCTTTCCCHH---HHHHHT--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHc-CCHHHHHHHH-HCCCCCCccCCCCCcCHH---HHHHHc--CCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            67777766 9998884433 33333221    133222   211111  136888999988887651             


Q ss_pred             -------------------ccccCCCCcccccccCCccccccccCC-CCCCCc------ccccccCCCCCCcHHHHHHHc
Q 042589           96 -------------------KYVYNGREPRISTFGQDVNAFTARETP-PDPNTY------KKKNARRSRRKETPILVAAKM  149 (429)
Q Consensus        96 -------------------~~d~~G~~P~~~~~~~~~~~~~~i~ll-~~~~~~------~~~~~~~d~~G~TpLh~Aa~~  149 (429)
                                         ..|..|+||+|.+...+..+.  ++.+ +.+...      .......+..|.||||+|++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~--~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA--LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHH--HHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHH--HHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence                               133446777776554332221  1111 111111      111234566789999999999


Q ss_pred             CcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCC----HHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcc
Q 042589          150 GVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQ----THVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRP  225 (429)
Q Consensus       150 G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~----~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~  225 (429)
                      |+.++|++||++.+..++.+|..|+|+||.++..++    ..++++|++.|+    ++|.+|.+|+||||+|+..|+.+.
T Consensus       179 g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~ga----d~n~~d~~g~t~L~~a~~~~~~~~  254 (337)
T 4g8k_A          179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA----DVNVRGERGKTPLILAVEKKHLGL  254 (337)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTC----CTTCCCGGGCCHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHhhhhHH
Confidence            999999999976554456677777777777665433    346677777776    677777777777777777777554


Q ss_pred             cc
Q 042589          226 WH  227 (429)
Q Consensus       226 ~~  227 (429)
                      ++
T Consensus       255 v~  256 (337)
T 4g8k_A          255 VQ  256 (337)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.66  E-value=1.3e-17  Score=163.90  Aligned_cols=142  Identities=13%  Similarity=0.009  Sum_probs=111.0

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCc---HHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGV---TEMV  155 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~---~eiv  155 (429)
                      .+++++|+++|+++|...|..|+||||.++..+..  +.++.|. .+.+    .+.+|.+|+||||+|+..|+   .+++
T Consensus       110 ~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~--~~v~~Ll~~Gad----~n~~d~~g~TpLh~A~~~g~~~~~~~~  183 (327)
T 1sw6_A          110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANL--ELVKHLVKHGSN----RLYGDNMGESCLVKAVKSVNNYDSGTF  183 (327)
T ss_dssp             HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCH--HHHHHHHHTTCC----TTBCCTTCCCHHHHHHHSSHHHHTTCH
T ss_pred             HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCH--HHHHHHHHcCCC----CCCcCCCCCCHHHHHHHhcccccHHHH
Confidence            57889999999999922467799999998775543  3344443 3332    25678899999999999999   7888


Q ss_pred             HHHHHhCCCccccCCCCCCcHHHHHHH----cCCHHHHHHHHcCCCc--------------------c------------
Q 042589          156 KKILDTFPVAIWDLDPGEKNVLLLAIE----NRQTHVYNLLRSREEL--------------------G------------  199 (429)
Q Consensus       156 ~~Ll~~~~~~~~~~d~~G~t~LH~A~~----~g~~~iv~~Ll~~~~~--------------------~------------  199 (429)
                      +.|++.....++.+|..|+||||+|+.    .|+.+++++|++.+..                    .            
T Consensus       184 ~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~  263 (327)
T 1sw6_A          184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL  263 (327)
T ss_dssp             HHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHH
T ss_pred             HHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhH
Confidence            888877655578889999999999999    8999999999876320                    0            


Q ss_pred             ---------ccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          200 ---------ETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       200 ---------~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                               +.++|.+|.+|+||||+|+..|+.++++
T Consensus       264 ~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~  300 (327)
T 1sw6_A          264 ENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD  300 (327)
T ss_dssp             HHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence                     0047888999999999999999977765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=1.2e-16  Score=131.46  Aligned_cols=90  Identities=19%  Similarity=0.199  Sum_probs=79.8

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNS  212 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~T  212 (429)
                      ...|.+|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+.+|+.+++++|++.++    +++.+|.+|+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~t   92 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA----DVXAQDKFGKT   92 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCC
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccccccCCCc
Confidence            45677899999999999999999999988665 57789999999999999999999999999998    89999999999


Q ss_pred             HHHHHHHcCCCcccc
Q 042589          213 ALHLAATYGDHRPWH  227 (429)
Q Consensus       213 pLHlAa~~g~~~~~~  227 (429)
                      |||+|+..|+.++++
T Consensus        93 pl~~A~~~~~~~~~~  107 (110)
T 2zgd_A           93 AFDISIDNGNEDLAE  107 (110)
T ss_dssp             HHHHHHHHTCHHHHH
T ss_pred             HHHHHHHcCCHHHHH
Confidence            999999999976653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.66  E-value=1.9e-16  Score=146.14  Aligned_cols=136  Identities=15%  Similarity=0.000  Sum_probs=106.9

Q ss_pred             HHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 042589           81 QVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILD  160 (429)
Q Consensus        81 ~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~  160 (429)
                      +++++|+++|++++ ..+..|.||+|.++..+..  +.++.+.+.....  ....+..|.||||+|+..|+.++++.|++
T Consensus        23 ~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~~~~~--~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~   97 (240)
T 3eu9_A           23 ERCRELVEAGYDVR-QPDKENVTLLHWAAINNRI--DLVKYYISKGAIV--DQLGGDLNSTPLHWATRQGHLSMVVQLMK   97 (240)
T ss_dssp             HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCCT--TCCBTTTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCH--HHHHHHHHcCCcc--hhhcCCcCCChhHHHHHcCCHHHHHHHHH
Confidence            45589999999998 4566799999988764433  2233333221111  12334569999999999999999999998


Q ss_pred             hCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCC-Cccc
Q 042589          161 TFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGD-HRPW  226 (429)
Q Consensus       161 ~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~-~~~~  226 (429)
                      .+.+ .+..|..|+||||+|+..|+.+++++|++.+.    +++.+|.+|.||||+|+..++ .+++
T Consensus        98 ~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           98 YGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ----DVDMMDQNGMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             TTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred             cCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCC----CccccCCCCCcHHHHHHHhCChHHHH
Confidence            8655 46789999999999999999999999999988    899999999999999998877 3443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.66  E-value=1.2e-16  Score=140.46  Aligned_cols=118  Identities=17%  Similarity=0.053  Sum_probs=97.1

Q ss_pred             CCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHH
Q 042589          100 NGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLL  179 (429)
Q Consensus       100 ~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~  179 (429)
                      +|.||+|.++..+.  .+.++.+.+..   ...+..|..|+||||+|+..|+.++++.|++++.+ .+..|..|+||||+
T Consensus         2 ~~~t~L~~A~~~g~--~~~v~~ll~~~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   75 (167)
T 3v31_A            2 ANSLSVHQLAAQGE--MLYLATRIEQE---NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSL   75 (167)
T ss_dssp             TTCCCHHHHHHTTC--HHHHHHHHHHS---SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred             CCcchHHHHHHCCC--HHHHHHHHHcC---CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHH
Confidence            58899998876443  22232222211   11366788999999999999999999999998655 47789999999999


Q ss_pred             HHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          180 AIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       180 A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |+..|+.+++++|++.+.    +++.+|.+|+||||+|+..|+.++++
T Consensus        76 A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~  119 (167)
T 3v31_A           76 ACSKGYTDIVKMLLDCGV----DVNEYDWNGGTPLLYAVHGNHVKCVK  119 (167)
T ss_dssp             HHHHTCHHHHHHHHHHTC----CTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCC----CCCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999988    89999999999999999999988776

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.65  E-value=7.6e-17  Score=155.21  Aligned_cols=132  Identities=11%  Similarity=0.035  Sum_probs=91.3

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      .+++++|+++|++++  .. +|+||+|.++..+..+  .++.|. .+.+    .+.+|..|+||||+|+..|+.+++++|
T Consensus        44 ~~~v~~Ll~~g~~~~--~~-~g~t~L~~A~~~g~~~--~v~~Ll~~ga~----~~~~d~~g~t~L~~A~~~g~~~~v~~L  114 (285)
T 3kea_A           44 VRLVCTLLNAGALKN--LL-ENEFPLHQAATLEDTK--IVKILLFSGLD----DSQFDDKGNTALYYAVDSGNMQTVKLF  114 (285)
T ss_dssp             HHHHHHHHHTTGGGS--CC-TTCCHHHHHTTSSSCH--HHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhCCCCCC--CC-CCCCHHHHHHHcCCHH--HHHHHHHCCCC----CCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            578888888888877  33 4788888776544322  233332 2222    245667788888888888888888888


Q ss_pred             HHhCCCccccCCCCC-CcHHHHHHHcCCHHHHHHHHcCCCccccccccccC-CCCcHHHHHHHcCCCcccc
Q 042589          159 LDTFPVAIWDLDPGE-KNVLLLAIENRQTHVYNLLRSREELGETIFWQVDN-LGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       159 l~~~~~~~~~~d~~G-~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~-~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++++.+ ++..|..| +||||+|+..|+.+++++|++.+.    ..  .|. +|.||||+|+..|+.++++
T Consensus       115 l~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~----~~--~~~~~g~t~L~~A~~~g~~~~v~  178 (285)
T 3kea_A          115 VKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP----ST--FDLAILLSCIHITIKNGHVDMMI  178 (285)
T ss_dssp             HHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC----TT--CCCSTHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC----cc--ccccCCccHHHHHHHcChHHHHH
Confidence            877555 46677777 688888888888888888888776    22  222 7788888888888866654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.65  E-value=1.8e-17  Score=158.94  Aligned_cols=138  Identities=17%  Similarity=0.116  Sum_probs=109.8

Q ss_pred             HHHHHHHHhCCCC--CCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHH-----HcCcH
Q 042589           80 IQVFDELVDDRNP--HVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAA-----KMGVT  152 (429)
Q Consensus        80 ~~iv~~Ll~~~a~--~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa-----~~G~~  152 (429)
                      ++.++.|++++.+  +| ..|.+|+||+|.++..+..  +.++.|.+....  ..+..|..|+||||+|+     ..|+.
T Consensus        89 ~~~~~~l~~~~~~~~~n-~~d~~g~T~Lh~A~~~g~~--~~v~~Ll~~g~~--~~~~~~~~g~tpL~~a~~~~~~~~~~~  163 (276)
T 4hbd_A           89 LVTFRAMSARLLDYVVN-IADSNGNTALHYSVSHANF--PVVQQLLDSGVC--KVDKQNRAGYSPIMLTALATLKTQDDI  163 (276)
T ss_dssp             HHHHHHHCHHHHHHHHT-CCCTTSCCHHHHHHHTTCH--HHHHHHHHTSCC--CTTCCCTTSCCHHHHGGGCCCCSHHHH
T ss_pred             HHHHHHHHHHHHhhcCc-CCCCCCCCHHHHHHHCCCH--HHHHHHHHCCCC--cCCCCCCCCCCHHHHHHHHHhhhhhhH
Confidence            4667777776655  55 3566799999998764443  334333332221  12567889999999999     77999


Q ss_pred             HHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          153 EMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       153 eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++++.|++.+.. ....|..|+||||+|+.+|+.+++++|++.|+    ++|.+|.+|+||||+|+..|+.++++
T Consensus       164 ~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga----d~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          164 ETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEA----DVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             HHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            999999988644 46678899999999999999999999999998    89999999999999999999988776

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.65  E-value=3.6e-16  Score=153.27  Aligned_cols=86  Identities=26%  Similarity=0.289  Sum_probs=76.4

Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcH
Q 042589          134 RRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSA  213 (429)
Q Consensus       134 ~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~Tp  213 (429)
                      .+|.+|+||||+|+..|+.++++.|++..+..++.+|.+|+||||+|+++|+.++|++|++.|+    ++|.     .||
T Consensus       234 ~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA----d~n~-----~~~  304 (337)
T 4g8k_A          234 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA----STDC-----GDL  304 (337)
T ss_dssp             CCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC----SSTT-----CCH
T ss_pred             CcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCC-----CCH
Confidence            4567899999999999999999999987666678899999999999999999999999999998    6654     469


Q ss_pred             HHHHHHcCCCccccc
Q 042589          214 LHLAATYGDHRPWHT  228 (429)
Q Consensus       214 LHlAa~~g~~~~~~~  228 (429)
                      ||+|+..|+.+++++
T Consensus       305 L~~A~~~~~~~iv~~  319 (337)
T 4g8k_A          305 VMTARRNYDHSLVKV  319 (337)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999999999888774

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.65  E-value=1.3e-16  Score=149.07  Aligned_cols=87  Identities=13%  Similarity=-0.019  Sum_probs=73.6

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccccccccc-CCCCcH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVD-NLGNSA  213 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D-~~G~Tp  213 (429)
                      +|..|+||||+||..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|+    +++.+| .+|+||
T Consensus        50 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga----~~~~~~~~~g~tp  124 (229)
T 2vge_A           50 PNEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGA----AIFATTLSDGATA  124 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC----CTTCCCSSTTCCT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CcccccCCCCCCH
Confidence            456799999999999999999999988655 47788899999999999999999999999888    788886 599999


Q ss_pred             HHHH--HHcCCCccc
Q 042589          214 LHLA--ATYGDHRPW  226 (429)
Q Consensus       214 LHlA--a~~g~~~~~  226 (429)
                      ||+|  +..|+.+++
T Consensus       125 L~~A~a~~~~~~~~v  139 (229)
T 2vge_A          125 FEKCDPYREGYADCA  139 (229)
T ss_dssp             GGGCCTTSTTHHHHH
T ss_pred             HHHHHHHhcChHHHH
Confidence            9998  777775544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.65  E-value=3.9e-16  Score=135.46  Aligned_cols=89  Identities=17%  Similarity=0.080  Sum_probs=82.2

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNS  212 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~T  212 (429)
                      +..|..|+||||+ |..|+.++++.|++++.+ ++.+|..|+||||+|+..|+.+++++|++.|.    +++.+|.+|+|
T Consensus        30 ~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t  103 (156)
T 1bd8_A           30 DALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA----DVNVPDGTGAL  103 (156)
T ss_dssp             TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCTTSCC
T ss_pred             cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC----CCCCcCCCCCc
Confidence            5677899999999 999999999999998665 57789999999999999999999999999998    89999999999


Q ss_pred             HHHHHHHcCCCcccc
Q 042589          213 ALHLAATYGDHRPWH  227 (429)
Q Consensus       213 pLHlAa~~g~~~~~~  227 (429)
                      |||+|+..|+.++++
T Consensus       104 ~L~~A~~~~~~~~v~  118 (156)
T 1bd8_A          104 PIHLAVQEGHTAVVS  118 (156)
T ss_dssp             HHHHHHHHTCHHHHH
T ss_pred             HHHHHHHhChHHHHH
Confidence            999999999977765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.65  E-value=2.3e-16  Score=134.26  Aligned_cols=88  Identities=22%  Similarity=0.110  Sum_probs=81.7

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSAL  214 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpL  214 (429)
                      +|.+|+||||+|+..|+.++++.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.+.    +++.+|.+|+|||
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L   80 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKA----LVNTTGYQNDSPL   80 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCGGGCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----cccCcCCCCCCHH
Confidence            567899999999999999999999998665 47789999999999999999999999999998    8999999999999


Q ss_pred             HHHHHcCCCcccc
Q 042589          215 HLAATYGDHRPWH  227 (429)
Q Consensus       215 HlAa~~g~~~~~~  227 (429)
                      |+|+..|+.++++
T Consensus        81 ~~A~~~~~~~~v~   93 (137)
T 3c5r_A           81 HDAAKNGHVDIVK   93 (137)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHH
Confidence            9999999987765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.65  E-value=2e-17  Score=144.40  Aligned_cols=121  Identities=12%  Similarity=0.020  Sum_probs=96.7

Q ss_pred             cccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCc-
Q 042589           97 YVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKN-  175 (429)
Q Consensus        97 ~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t-  175 (429)
                      .+..|.||+|.++..+..  +.++.+.+...   ..+..|..|+||||+|+ .|+.+++++|++++.+ ++.+|..|+| 
T Consensus         8 ~~~~~~t~L~~A~~~g~~--~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~tt   80 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRV--EEVRALLEAGA---NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTR   80 (156)
T ss_dssp             --CCSTTHHHHHHHHTCH--HHHHHHHTTTC---CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCC
T ss_pred             CCccchHHHHHHHHcCCH--HHHHHHHHcCC---CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcH
Confidence            345699999988764432  23333332211   22567789999999985 9999999999988655 5778999999 


Q ss_pred             HHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          176 VLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       176 ~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      |||+|+..|+.+++++|++.++    +++.+|.+|+||||+|+..|+.++++.
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~~~~~~~v~~  129 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHRAGA----RLDVRDAWGRLPVDLAEELGHRDVARY  129 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTC----CSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCC----CCcccCCCCCCHHHHHHHhCHHHHHHH
Confidence            9999999999999999999988    899999999999999999999877653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.64  E-value=1.3e-16  Score=139.15  Aligned_cols=155  Identities=10%  Similarity=-0.046  Sum_probs=109.9

Q ss_pred             CchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccccC
Q 042589           32 PSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQ  111 (429)
Q Consensus        32 ~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~  111 (429)
                      .|++.+|.. |+.+.++.++ +...........+...++-...   ...+++++|+++|++++ ..+..|.||+|.++..
T Consensus         7 ~~L~~A~~~-g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~---~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            7 NELASAAAR-GDLEQLTSLL-QNNVNVNAQNGFGRTALQVMKL---GNPEIARRLLLRGANPD-LKDRTGFAVIHDAARA   80 (162)
T ss_dssp             HHHHHHHHH-TCHHHHHHHT-TSCCCTTCCCTTSCCHHHHCCS---SCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred             hHHHHHHHc-CCHHHHHHHH-hCCCCccccCccCccHHHHHHc---CcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHc
Confidence            367777777 8898884443 1111111111111222222222   35799999999999999 4566799999988764


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHH
Q 042589          112 DVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNL  191 (429)
Q Consensus       112 ~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~  191 (429)
                      +..  +.++.+.+..   ...+.+|.+|+||||+|++.|+.+++++|++++++..+..|..|+||||+|+..|+.+++++
T Consensus        81 ~~~--~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  155 (162)
T 1ihb_A           81 GFL--DTLQTLLEFQ---ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL  155 (162)
T ss_dssp             TCH--HHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCH--HHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            432  2233333221   12256788999999999999999999999999888778889999999999999999999999


Q ss_pred             HHcCCC
Q 042589          192 LRSREE  197 (429)
Q Consensus       192 Ll~~~~  197 (429)
                      |++.|+
T Consensus       156 Ll~~GA  161 (162)
T 1ihb_A          156 MQANGA  161 (162)
T ss_dssp             HHHTC-
T ss_pred             HHHhCC
Confidence            999986

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.64  E-value=6.1e-16  Score=145.52  Aligned_cols=85  Identities=20%  Similarity=0.121  Sum_probs=77.0

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCC-CCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLD-PGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSA  213 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d-~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~Tp  213 (429)
                      +|..|+||||+||..|+.++|++|++++.+. +.+| ..|+||||+|+.+|+.+++++|++.|+    ++|.+|.+|+||
T Consensus        73 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~~~~d~~g~t~  147 (244)
T 3ui2_A           73 VDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGA----DIEVEDERGLTA  147 (244)
T ss_dssp             BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTCCCH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCcH
Confidence            5668999999999999999999999987765 5566 789999999999999999999999998    899999999999


Q ss_pred             HHHHHHcCCCc
Q 042589          214 LHLAATYGDHR  224 (429)
Q Consensus       214 LHlAa~~g~~~  224 (429)
                      ||+|+..++..
T Consensus       148 l~~A~~~~~~~  158 (244)
T 3ui2_A          148 LELAREILKTT  158 (244)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHhcc
Confidence            99999876643

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.63  E-value=2.3e-16  Score=130.15  Aligned_cols=89  Identities=28%  Similarity=0.266  Sum_probs=81.5

Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcH
Q 042589          134 RRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSA  213 (429)
Q Consensus       134 ~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~Tp  213 (429)
                      .+|++|+||||+|+..|+.++++.|++++.+ ++..|..|+||||+|+..|+.+++++|++.++    +++.+|.+|+||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~d~~g~tp   78 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA----DVNARSKDGNTP   78 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC----CTTCCCTTCCCT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC----CCcccCCCCCCH
Confidence            3577899999999999999999999988766 57789999999999999999999999999988    899999999999


Q ss_pred             HHHHHHcCCCcccc
Q 042589          214 LHLAATYGDHRPWH  227 (429)
Q Consensus       214 LHlAa~~g~~~~~~  227 (429)
                      ||+|+..|+.++++
T Consensus        79 l~~A~~~~~~~~~~   92 (115)
T 2l6b_A           79 EHLAKKNGHHEIVK   92 (115)
T ss_dssp             THHHHTTTCHHHHH
T ss_pred             HHHHHHCCCHHHHH
Confidence            99999999977665

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.63  E-value=3.4e-16  Score=146.17  Aligned_cols=89  Identities=20%  Similarity=0.112  Sum_probs=82.2

Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcH
Q 042589          134 RRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSA  213 (429)
Q Consensus       134 ~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~Tp  213 (429)
                      ..+.+|.||||+||..|+.++++.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|+    ++|.+|.+|+||
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga----~~n~~d~~g~tp   90 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGA----NVNSPDSHGWTP   90 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTCCCH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCH
Confidence            3456789999999999999999999998765 47789999999999999999999999999998    899999999999


Q ss_pred             HHHHHHcCCCcccc
Q 042589          214 LHLAATYGDHRPWH  227 (429)
Q Consensus       214 LHlAa~~g~~~~~~  227 (429)
                      ||+|+..|+.++++
T Consensus        91 Lh~A~~~g~~~~v~  104 (229)
T 2vge_A           91 LHCAASCNDTVICM  104 (229)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            99999999988776

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.63  E-value=2.1e-16  Score=147.92  Aligned_cols=118  Identities=14%  Similarity=0.024  Sum_probs=79.7

Q ss_pred             cCCCCcccccccCCcccccccc-CCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHH
Q 042589           99 YNGREPRISTFGQDVNAFTARE-TPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVL  177 (429)
Q Consensus        99 ~~G~~P~~~~~~~~~~~~~~i~-ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~L  177 (429)
                      .+|.||+|.+...+...  .++ +++.+.+..     .+..|.||||.|+..|+.++++.|++.+++ ++.+|..|+|||
T Consensus         3 ~~g~t~L~~a~~~~~~~--~~~~ll~~g~~~~-----~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L   74 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRK--TGSERIAHGMRVK-----FNPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITAL   74 (239)
T ss_dssp             -----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHH
T ss_pred             ccccccCchhhhhhhHH--HHHHHhccCCCcc-----cCchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHH
Confidence            35999999887643332  232 333333322     235789999999999999999999988765 578899999999


Q ss_pred             HHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          178 LLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       178 H~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      |+|+.+|+.+++++|++.++    ++|.+|.+|+||||+|+..|+.+++++
T Consensus        75 ~~A~~~g~~~~v~~Ll~~ga----~~~~~d~~g~tpL~~A~~~~~~~~v~~  121 (239)
T 1ycs_B           75 HNAVCAGHTEIVKFLVQFGV----NVNAADSDGWTPLHCAASCNNVQVCKF  121 (239)
T ss_dssp             HHHHHHTCHHHHHHHHHHTC----CTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCC----CCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999988    899999999999999999999887763

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.63  E-value=7e-16  Score=150.15  Aligned_cols=88  Identities=17%  Similarity=0.119  Sum_probs=75.6

Q ss_pred             CCCCCCcHHHHHHHc---CcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCC
Q 042589          135 RSRRKETPILVAAKM---GVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGN  211 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~---G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~  211 (429)
                      .+..|+||||+|+..   |+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|+    +++.+|.+|+
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~G~  260 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTALHYAALYNQPDCLKLLLKGRA----LVGTVNEAGE  260 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CCSCCCTTSC
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCC
Confidence            456789999999987   889999999988665 47788899999999999999999999999888    8889999999


Q ss_pred             cHHHHHHHcCCCcccc
Q 042589          212 SALHLAATYGDHRPWH  227 (429)
Q Consensus       212 TpLHlAa~~g~~~~~~  227 (429)
                      ||||+|+..|+.++++
T Consensus       261 TpL~~A~~~~~~~iv~  276 (301)
T 2b0o_E          261 TALDIARKKHHKECEE  276 (301)
T ss_dssp             CHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHcCCHHHHH
Confidence            9999999998866554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.63  E-value=5.2e-16  Score=129.70  Aligned_cols=87  Identities=16%  Similarity=0.034  Sum_probs=78.8

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHH
Q 042589          136 SRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALH  215 (429)
Q Consensus       136 d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLH  215 (429)
                      +..|.||||+|+..|+.++++.|++.+++ ++.+|..|+||||+|+..|+.+++++|++.++    ++|.+|.+|+||||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~d~~g~tpL~   78 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA----DINAPDKHHITPLL   78 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC----CTTCCCTTSCCHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCcCCCCCCCHHH
Confidence            34689999999999999999999998766 57789999999999999999999999999998    89999999999999


Q ss_pred             HHHHcCCCcccc
Q 042589          216 LAATYGDHRPWH  227 (429)
Q Consensus       216 lAa~~g~~~~~~  227 (429)
                      +|+..|+.++++
T Consensus        79 ~A~~~~~~~~v~   90 (123)
T 3aaa_C           79 SAVYEGHVSCVK   90 (123)
T ss_dssp             HHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            999999977765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.62  E-value=1e-15  Score=153.25  Aligned_cols=108  Identities=13%  Similarity=0.094  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      .+++++.|+++|+++|  .                                   ...+..|.||||+|+..|+.+++++|
T Consensus       212 ~~~~v~~LL~~Gadvn--~-----------------------------------~~~~~~g~TpLh~Aa~~g~~~iv~~L  254 (368)
T 3jue_A          212 SLPTMADALAHGADVN--W-----------------------------------VNGGQDNATPLIQATAANSLLACEFL  254 (368)
T ss_dssp             CHHHHHHHHHTTCCTT--C-----------------------------------CCTTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCC--c-----------------------------------cccccCCCCHHHHHHHCCCHHHHHHH
Confidence            4788999999999988  1                                   00125799999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      ++++.+ ++..|..|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|+..|+.+++.+
T Consensus       255 L~~Gad-vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Ga----d~~~~d~~G~TpL~~A~~~g~~~iv~l  319 (368)
T 3jue_A          255 LQNGAN-VNQADSAGRGPLHHATILGHTGLACLFLKRGA----DLGARDSEGRDPLTIAMETANADIVTL  319 (368)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHcCCC-CCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcC----CCCCcCCCCCCHHHHHHHCCCHHHHHH
Confidence            998665 57889999999999999999999999999998    899999999999999999999777653

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.62  E-value=7e-16  Score=160.27  Aligned_cols=112  Identities=14%  Similarity=0.059  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHH---cCcHHHH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAK---MGVTEMV  155 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~---~G~~eiv  155 (429)
                      .++.++.|+++|+++|  ....                               ....|..|+||||+|++   .|+.++|
T Consensus       144 ~~~~v~~ll~~g~~~n--~~~~-------------------------------~~~~~~~g~t~Lh~A~~~a~~g~~~~v  190 (497)
T 3lvq_E          144 DLLSVLEAFANGQDFG--QPLP-------------------------------GPDAQAPEELVLHLAVKVANQASLPLV  190 (497)
T ss_dssp             CHHHHHHHHHTTCCSS--SCBC-------------------------------CSSSCCSCBCHHHHHHHTCCTTTHHHH
T ss_pred             CHHHHHHHHhhccccc--CCCC-------------------------------CcccccccchHHHHHHHhcccccHHHH
Confidence            3678899999999998  1000                               01235689999999966   9999999


Q ss_pred             HHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          156 KKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       156 ~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      ++|++++.+ ++.+|.+|+||||+|+.+|+.+++++|++.|+    ++|.+|.+|+||||+|+..|+.+++++
T Consensus       191 ~~Ll~~ga~-vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~~~~~~~~~~  258 (497)
T 3lvq_E          191 DFIIQNGGH-LDAKAADGNTALHYAALYNQPDCLKLLLKGRA----LVGTVNEAGETALDIARKKHHKECEEL  258 (497)
T ss_dssp             HHHHHHSCC-TTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCC----CCSCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            999998766 57889999999999999999999999999998    899999999999999999999887764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.60  E-value=1.5e-15  Score=131.63  Aligned_cols=88  Identities=16%  Similarity=0.102  Sum_probs=81.3

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSAL  214 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpL  214 (429)
                      .+..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.+.    +++.+|.+|+|||
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L  104 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKHGA----DVNAKDMLKMTAL  104 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC----CTTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCC----CCCCCCCCCCCHH
Confidence            467899999999999999999999988665 47789999999999999999999999999988    8999999999999


Q ss_pred             HHHHHcCCCcccc
Q 042589          215 HLAATYGDHRPWH  227 (429)
Q Consensus       215 HlAa~~g~~~~~~  227 (429)
                      |+|+..|+.++++
T Consensus       105 ~~A~~~~~~~~v~  117 (153)
T 1awc_B          105 HWATEHNHQEVVE  117 (153)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHH
Confidence            9999999977765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.60  E-value=3.8e-16  Score=133.07  Aligned_cols=90  Identities=17%  Similarity=0.045  Sum_probs=82.5

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCC-CC
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNL-GN  211 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~-G~  211 (429)
                      +..|..|.||||+|++.|+.+++++|++++.+ ++.+|..|+||||+|+. |+.+++++|++.++    +++.+|.+ |+
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~----~~~~~~~~~g~   79 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGA----EPNCADPATLT   79 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC----CSSCCBTTTTB
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC----CCCCcCCCCCC
Confidence            55678899999999999999999999998655 57789999999999999 99999999999988    89999999 99


Q ss_pred             cHHHHHHHcCCCccccc
Q 042589          212 SALHLAATYGDHRPWHT  228 (429)
Q Consensus       212 TpLHlAa~~g~~~~~~~  228 (429)
                      ||||+|+..|+.+++++
T Consensus        80 t~L~~A~~~~~~~~v~~   96 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVV   96 (136)
T ss_dssp             CHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHH
Confidence            99999999999887663

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.59  E-value=2.7e-15  Score=132.46  Aligned_cols=90  Identities=23%  Similarity=0.188  Sum_probs=82.7

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNS  212 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~T  212 (429)
                      +.+|..|.||||+|+..|+.+++++|++++.+ .+..|..|+||||+|+..|+.+++++|++.++    +++.+|.+|+|
T Consensus        41 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t  115 (169)
T 2y1l_E           41 NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA----DVNANDMEGHT  115 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCC
Confidence            55778999999999999999999999998655 47789999999999999999999999999998    89999999999


Q ss_pred             HHHHHHHcCCCcccc
Q 042589          213 ALHLAATYGDHRPWH  227 (429)
Q Consensus       213 pLHlAa~~g~~~~~~  227 (429)
                      |||+|+..|+.++++
T Consensus       116 ~L~~A~~~~~~~~v~  130 (169)
T 2y1l_E          116 PLHLAAMFGHLEIVE  130 (169)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHH
Confidence            999999999977765

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.58  E-value=1.6e-15  Score=129.14  Aligned_cols=87  Identities=22%  Similarity=0.192  Sum_probs=79.9

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHH
Q 042589          136 SRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALH  215 (429)
Q Consensus       136 d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLH  215 (429)
                      ...|.||||+||..|+.++++.|++++.+ ++.+|..|+||||+|+.+|+.+++++|++.++    ++|.+|.+|+||||
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~d~~g~t~L~   85 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA----DVNAVDAIGFTPLH   85 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTCCCHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCcCCCCCCCHHH
Confidence            34689999999999999999999998766 57789999999999999999999999999988    89999999999999


Q ss_pred             HHHHcCCCcccc
Q 042589          216 LAATYGDHRPWH  227 (429)
Q Consensus       216 lAa~~g~~~~~~  227 (429)
                      +|+..|+.++++
T Consensus        86 ~A~~~~~~~~v~   97 (136)
T 2jab_A           86 LAAFIGHLEIAE   97 (136)
T ss_dssp             HHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            999999977765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.57  E-value=4.8e-15  Score=122.97  Aligned_cols=85  Identities=29%  Similarity=0.296  Sum_probs=78.8

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHH
Q 042589          138 RKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLA  217 (429)
Q Consensus       138 ~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlA  217 (429)
                      +|+||||+|++.|+.+++++|++.+++ ++..|..|+||||+|+..++.+++++|++.+.    +++.+|.+|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC----CCcccCCCCCcHHHHH
Confidence            489999999999999999999998766 46789999999999999999999999999988    8999999999999999


Q ss_pred             HHcCCCcccc
Q 042589          218 ATYGDHRPWH  227 (429)
Q Consensus       218 a~~g~~~~~~  227 (429)
                      +..|+.++++
T Consensus        76 ~~~~~~~~~~   85 (126)
T 1n0r_A           76 ARNGHLEVVK   85 (126)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHcChHHHHH
Confidence            9999977665

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.57  E-value=1.6e-15  Score=147.58  Aligned_cols=130  Identities=9%  Similarity=-0.017  Sum_probs=92.7

Q ss_pred             HHHHHHHHhCCCCCCcc-----cccCCCCcccccccCC-ccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHH
Q 042589           80 IQVFDELVDDRNPHVYK-----YVYNGREPRISTFGQD-VNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTE  153 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~-----~d~~G~~P~~~~~~~~-~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~e  153 (429)
                      ++.++.|+++|++++..     .+..|+||+|.++... ....+.+++|.+...   +.+.+|.+|+||||+|+..|+.+
T Consensus       164 ~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga---dvn~~d~~G~TpLh~A~~~g~~~  240 (301)
T 2b0o_E          164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG---HLDAKAADGNTALHYAALYNQPD  240 (301)
T ss_dssp             HHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS---CTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC---CCCCCCCCCCCHHHHHHHcCCHH
Confidence            44567778888888721     2556888888876531 122333333332211   12557789999999999999999


Q ss_pred             HHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCC
Q 042589          154 MVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDH  223 (429)
Q Consensus       154 iv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~  223 (429)
                      ++++|++++.+ ++.+|.+|+||||+|+..|+.+++++|++.++    +      .|+||||+|+..|+.
T Consensus       241 ~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga----~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          241 CLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQA----G------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH----H------TTSSCCC--------
T ss_pred             HHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC----C------CCCChhHHHHhcCCc
Confidence            99999998766 57889999999999999999999999998876    2      589999999999874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.55  E-value=1.1e-14  Score=120.06  Aligned_cols=75  Identities=23%  Similarity=0.170  Sum_probs=67.0

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSAL  214 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpL  214 (429)
                      .|..|+||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|++.|+    ++|.+|.+|.||=
T Consensus        38 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga----~~n~~~~~~~~~~  112 (115)
T 2l6b_A           38 RSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA----DVNARSWGSSHHH  112 (115)
T ss_dssp             CCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSS----SHHHHSCCCC---
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHHcCC----CCCcCCccccccc
Confidence            456899999999999999999999988766 57789999999999999999999999999998    9999999999983

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.55  E-value=3.3e-15  Score=137.65  Aligned_cols=91  Identities=24%  Similarity=0.263  Sum_probs=82.5

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcC-CCccccccccccCCCC
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSR-EELGETIFWQVDNLGN  211 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~-~~~~~~~in~~D~~G~  211 (429)
                      +..+.+|.||||+||..|+.++++.|++.+.+ ++.+|..|+||||+|+.+|+.+++++|++. ++    ++|.+|.+|+
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~----~~~~~d~~g~  141 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI----ELNQQNKLGD  141 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC----CCCCCCTTSC
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC----CccccCCCCC
Confidence            34566789999999999999999999998765 577899999999999999999999999998 76    8999999999


Q ss_pred             cHHHHHHHcCCCccccc
Q 042589          212 SALHLAATYGDHRPWHT  228 (429)
Q Consensus       212 TpLHlAa~~g~~~~~~~  228 (429)
                      ||||+|+..|+.+++++
T Consensus       142 tpL~~A~~~~~~~~v~~  158 (222)
T 3ehr_A          142 TALHAAAWKGYADIVQL  158 (222)
T ss_dssp             CHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHH
Confidence            99999999999887763

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.53  E-value=3.9e-14  Score=112.39  Aligned_cols=78  Identities=24%  Similarity=0.288  Sum_probs=70.0

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .+++++|+++|+++|                                       .+|..|+||||+|+..|+.+++++|+
T Consensus        15 ~~~v~~Ll~~g~~~n---------------------------------------~~d~~g~t~L~~A~~~~~~~~v~~Ll   55 (93)
T 1n0q_A           15 LEVVKLLLEAGADVN---------------------------------------AKDKNGRTPLHLAARNGHLEVVKLLL   55 (93)
T ss_dssp             HHHHHHHHHTTCCTT---------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCc---------------------------------------ccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            467789999999887                                       24568999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREE  197 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~  197 (429)
                      +++.+ ++.+|.+|+||||+|+..|+.+++++|++.|+
T Consensus        56 ~~ga~-~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           56 EAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            98766 47789999999999999999999999999886

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.53  E-value=3.9e-15  Score=133.42  Aligned_cols=86  Identities=22%  Similarity=0.210  Sum_probs=78.9

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccccccccc-CCCCcHH
Q 042589          136 SRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVD-NLGNSAL  214 (429)
Q Consensus       136 d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D-~~G~TpL  214 (429)
                      +.+|.||||+|++.|+.++++.|++ +. .++.+|..|+||||+|+..|+.+++++|++.++    ++|.+| .+|+|||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~~g~tpL  114 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA----DLDHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TS-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCSSSSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCcCCCCCCCCHH
Confidence            4579999999999999999999998 44 467889999999999999999999999999998    899998 9999999


Q ss_pred             HHHHHcCCCcccc
Q 042589          215 HLAATYGDHRPWH  227 (429)
Q Consensus       215 HlAa~~g~~~~~~  227 (429)
                      |+|+..|+.++++
T Consensus       115 ~~A~~~~~~~~v~  127 (183)
T 3deo_A          115 HMAAGYVRPEVVE  127 (183)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHhcCcHHHHH
Confidence            9999999987765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.48  E-value=1.1e-14  Score=137.04  Aligned_cols=87  Identities=22%  Similarity=0.210  Sum_probs=79.3

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccccccccc-CCCCcHH
Q 042589          136 SRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVD-NLGNSAL  214 (429)
Q Consensus       136 d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D-~~G~TpL  214 (429)
                      +.+|.||||+||+.|+.++++.|++ +. .++.+|..|+||||+|+.+|+.+++++|++.++    ++|.+| .+|+|||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~~~~~~~~g~t~L  115 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA----DLDHRDMRGGLTAL  115 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC----CTTCCCSSSCCCHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CC-CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC----CCCcCCCCCCCCHH
Confidence            3479999999999999999999998 44 457889999999999999999999999999998    899998 8899999


Q ss_pred             HHHHHcCCCccccc
Q 042589          215 HLAATYGDHRPWHT  228 (429)
Q Consensus       215 HlAa~~g~~~~~~~  228 (429)
                      |+|+..|+.+++++
T Consensus       116 ~~A~~~g~~~~v~~  129 (244)
T 3ui2_A          116 HMAAGYVRPEVVEA  129 (244)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHH
Confidence            99999999887763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.48  E-value=1.4e-14  Score=131.07  Aligned_cols=82  Identities=5%  Similarity=-0.050  Sum_probs=73.6

Q ss_pred             CCCCcHHHHHHHcCcH----HHHHHHHHhCCCccccCCCCCCcHHHHHHHcCC------HHHHHHHHcCCCccccccccc
Q 042589          137 RRKETPILVAAKMGVT----EMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQ------THVYNLLRSREELGETIFWQV  206 (429)
Q Consensus       137 ~~G~TpLh~Aa~~G~~----eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~------~~iv~~Ll~~~~~~~~~in~~  206 (429)
                      ..|+||||+|+..|+.    +++++|++++.+ ++.+|..|+||||+|+..++      .+++++|++.|+    ++|.+
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga----din~~  110 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA----DITAL  110 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC----CSSSC
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC----CCCcc
Confidence            4699999999999975    599999998766 58889999999999999987      588999999998    99999


Q ss_pred             cCCCC-cHHHHHHHcCCC
Q 042589          207 DNLGN-SALHLAATYGDH  223 (429)
Q Consensus       207 D~~G~-TpLHlAa~~g~~  223 (429)
                      |.+|+ ||||+|+..+..
T Consensus       111 d~~g~ttpLh~A~~~~~~  128 (186)
T 3t8k_A          111 YKPYKIVVFKNIFNYFVD  128 (186)
T ss_dssp             BGGGTBCTTGGGGGCCSC
T ss_pred             CCCcCchHHHHHHHcCCC
Confidence            99999 999999996653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.47  E-value=8.5e-16  Score=154.26  Aligned_cols=133  Identities=16%  Similarity=0.047  Sum_probs=91.9

Q ss_pred             HHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 042589           81 QVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILD  160 (429)
Q Consensus        81 ~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~  160 (429)
                      +++++|+++|.+.        +||+|.+...+..+  .++.+.+........+..+..|.||||+||+.|+.++|++|++
T Consensus        80 ~~~~~l~~~g~~~--------~T~Lh~Aa~~G~~e--~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~  149 (376)
T 2aja_A           80 QLWSDAHKKGIKS--------EVICFVAAITGCSS--ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE  149 (376)
T ss_dssp             THHHHHHHHTCCH--------HHHHHHHHHHCCHH--HHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCc--------CCHHHHHHHcCCHH--HHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHh
Confidence            4556666655443        37777765533322  2333322221111112234467899999999999999999999


Q ss_pred             hCCCc--cccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccccccc--ccCCCCcHHHHHH-HcCCCccccc
Q 042589          161 TFPVA--IWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQ--VDNLGNSALHLAA-TYGDHRPWHT  228 (429)
Q Consensus       161 ~~~~~--~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~--~D~~G~TpLHlAa-~~g~~~~~~~  228 (429)
                      ++++.  .+..+.+ +||||+|+.+|+.+++++|++.|+    +++.  +|.+|.||||+|+ ..|+.++++.
T Consensus       150 ~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga----~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~  217 (376)
T 2aja_A          150 LAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAP----TEATAMIQAENYYAFRWAAVGRGHHNVINF  217 (376)
T ss_dssp             SCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCG----GGHHHHHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred             CCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCC----ccchhccCCCCCCHHHHHHHHCCCHHHHHH
Confidence            88641  1122223 999999999999999999999988    7776  8899999999999 9999888764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.37  E-value=2.4e-15  Score=151.05  Aligned_cols=133  Identities=10%  Similarity=-0.021  Sum_probs=95.5

Q ss_pred             HHHHHHHHhCCCCCCc--ccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHH
Q 042589           80 IQVFDELVDDRNPHVY--KYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKK  157 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~--~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~  157 (429)
                      ++++++|+++|+....  ..+..|.||+|.+...++.++  ++.|.+........+..+.+ .||||+||+.|+.++|++
T Consensus       105 ~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~ei--v~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~  181 (376)
T 2aja_A          105 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV--LNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNR  181 (376)
T ss_dssp             HHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHH--HHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHH--HHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHH
Confidence            6899999999983310  133458899998876554433  33343322110000111222 999999999999999999


Q ss_pred             HHHhCCCcccc--CCCCCCcHHHHHH-HcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          158 ILDTFPVAIWD--LDPGEKNVLLLAI-ENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       158 Ll~~~~~~~~~--~d~~G~t~LH~A~-~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |++++++. ..  .|..|+||||+|+ .+|+.+++++|++.++           .|+||||+|+..|+.++++
T Consensus       182 Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-----------~~~taL~~Aa~~g~~evv~  242 (376)
T 2aja_A          182 LCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-----------MLAYAEIHEFEYGEKYVNP  242 (376)
T ss_dssp             HHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-----------HHHHHHHCTTTTTTTTHHH
T ss_pred             HHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-----------ccchHHHHHHHCCCHHHHH
Confidence            99997764 33  6788999999999 9999999999998664           2899999999999988765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.37  E-value=2.5e-12  Score=105.42  Aligned_cols=57  Identities=25%  Similarity=0.348  Sum_probs=52.1

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLL  192 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~L  192 (429)
                      +|..|+||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|
T Consensus        53 ~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           53 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            456899999999999999999999998665 577899999999999999999999987

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.36  E-value=4.4e-13  Score=128.78  Aligned_cols=63  Identities=16%  Similarity=0.119  Sum_probs=57.9

Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 042589          134 RRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREE  197 (429)
Q Consensus       134 ~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~  197 (429)
                      .+|.+|+||||+|+..|+.++|+.|++++.+ ++.+|.+|+||||+|+..|+.+++++|++.++
T Consensus       200 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          200 KQTGKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3567899999999999999999999998766 57889999999999999999999999999876

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.23  E-value=7.3e-12  Score=125.21  Aligned_cols=87  Identities=14%  Similarity=0.038  Sum_probs=79.0

Q ss_pred             CCCCcHHHHHHHc-CcHHHHHHHHHhCCCccccCC--CCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcH
Q 042589          137 RRKETPILVAAKM-GVTEMVKKILDTFPVAIWDLD--PGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSA  213 (429)
Q Consensus       137 ~~G~TpLh~Aa~~-G~~eiv~~Ll~~~~~~~~~~d--~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~Tp  213 (429)
                      ..+.||||.|+.. |+.++++.|++++.+. +..|  ..|+||||+|+..|+.+++++|++.++    ++|.+|.+|+||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga----dvn~~d~~G~Tp  271 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGA----NVNQADSAGRGP  271 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCC----CCCCCCCCCCCH
Confidence            3567899999999 9999999999987664 5666  899999999999999999999999998    899999999999


Q ss_pred             HHHHHHcCCCccccc
Q 042589          214 LHLAATYGDHRPWHT  228 (429)
Q Consensus       214 LHlAa~~g~~~~~~~  228 (429)
                      ||+|+..|+.+++++
T Consensus       272 Lh~A~~~g~~~~v~~  286 (368)
T 3jue_A          272 LHHATILGHTGLACL  286 (368)
T ss_dssp             HHHHHHHTCHHHHHH
T ss_pred             HHHHHHcCcHHHHHH
Confidence            999999999887763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	429
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.003
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 141 TPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGE 200
           TP+ VA+ MG   +VK +L     +    +   +  L +A     T V   L        
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN---KA 57

Query: 201 TIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQ 243
            +  +      + LH AA  G       L   L+ +   +   
Sbjct: 58  KVNAK-AKDDQTPLHCAARIGHTNMVKLL---LENNANPNLAT 96

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 20/157 (12%), Positives = 46/157 (29%), Gaps = 15/157 (9%)

Query: 106 ISTFGQDVNA------FTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL 159
           I TF  D+ +          +  P P     +   +  + E  +       + EM   + 
Sbjct: 3   IITFTHDLTSDFLSSPLKIMKALPSPVVNDNE---QKMKLEAFLQRLLFPEIQEMPTSLN 59

Query: 160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAAT 219
           +       +     +    ++ ++    +  +  +       +   VD  GN+ LH   +
Sbjct: 60  NDSSNRNSEGGSSNQQQQHVSFDS---LLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTS 116

Query: 220 YGDHRPWHTL---GAALQMHWEISWFQFVKATTKQAH 253
             +      L   G+       +     VKA     +
Sbjct: 117 IANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 153

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 146 AAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQ 205
           AAK  +  ++  I+      I      +++        R+  +   L  +  +   +  Q
Sbjct: 196 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 255

Query: 206 VDNLGNSALHLAATYGD 222
            D+ G++ L++AA  G+
Sbjct: 256 -DSNGDTCLNIAARLGN 271

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 174 KNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAAL 233
              L LA+ ++     + L       E +  Q ++LG +ALHLAA  G+      L AA 
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 234 QMHWEISWFQF 244
                      
Sbjct: 69  AGVLVAERGGH 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	429
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.84
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.78
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.78
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.77
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.75
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.74
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.73
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.73
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.72
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.72
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.7
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.68
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.66
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.66
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.64
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.64
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.62
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.61
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.59
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.54
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.54
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.53
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.53
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.53
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.51
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.5
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.49
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.45
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.45
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.43
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.39
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.34

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.2e-21  Score=178.87  Aligned_cols=185  Identities=13%  Similarity=-0.026  Sum_probs=131.8

Q ss_pred             CCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhh--HhHHHhhhhch----hHHHHHHHHHhCCCCCCcccccCCCCc
Q 042589           31 FPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGI--KNVREKKETHT----WAIQVFDELVDDRNPHVYKYVYNGREP  104 (429)
Q Consensus        31 ~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i--~~i~~~k~~h~----~a~~iv~~Ll~~~a~~~~~~d~~G~~P  104 (429)
                      ..|++.+|.. |..+.+..     ++.. |.....+  ++..+....|.    ...+++++|+++|++++ ..|++|+||
T Consensus        10 ~t~Lh~A~~~-~~~~~v~~-----Ll~~-~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~-~~d~~g~tp   81 (255)
T d1oy3d_          10 DTALHLAVIH-QHEPFLDF-----LLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHTA   81 (255)
T ss_dssp             CCHHHHHHHT-TCHHHHHH-----HHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCCH
T ss_pred             CCHHHHHHHc-CCHHHHHH-----HHHc-CCCcccccCcCCCCCCccchHHhhccccccccccccccccc-ccccccchh
Confidence            4588888888 77776632     2221 2111111  11111112221    13689999999999999 466779999


Q ss_pred             ccccccCCccccccccCCCC-------------------------------------------CCCcccccccCCCCCCc
Q 042589          105 RISTFGQDVNAFTARETPPD-------------------------------------------PNTYKKKNARRSRRKET  141 (429)
Q Consensus       105 ~~~~~~~~~~~~~~i~ll~~-------------------------------------------~~~~~~~~~~~d~~G~T  141 (429)
                      +|.+......+...+ +++.                                           ........+.+|.+|.|
T Consensus        82 L~~A~~~~~~~~~~~-Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~T  160 (255)
T d1oy3d_          82 LHLACRVRAHTCACV-LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (255)
T ss_dssp             HHHHTTTTCHHHHHH-HSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             hhhhhccCchHHHHH-HHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcc
Confidence            997655222111000 0000                                           00001122678899999


Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcC
Q 042589          142 PILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYG  221 (429)
Q Consensus       142 pLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g  221 (429)
                      |||+||+.|+.++++.|++.+.+.....+..|+||||+|+..|+.+++++|++.|+    ++|.+|++|+||||+|+..|
T Consensus       161 pLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~ga----din~~d~~g~t~L~~A~~~~  236 (255)
T d1oy3d_         161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA----DPTARMYGGRTPLGSALLRP  236 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHTSS
T ss_pred             cccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHCC
Confidence            99999999999999999999887766678899999999999999999999999998    89999999999999999999


Q ss_pred             CCccccc
Q 042589          222 DHRPWHT  228 (429)
Q Consensus       222 ~~~~~~~  228 (429)
                      +.+++++
T Consensus       237 ~~~i~~~  243 (255)
T d1oy3d_         237 NPILARL  243 (255)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            9887764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-19  Score=166.33  Aligned_cols=175  Identities=13%  Similarity=0.019  Sum_probs=129.0

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchh----hHh-HHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRG----IKN-VREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREP  104 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~----i~~-i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P  104 (429)
                      ...|++.+|.. |+.+.+     +.+..........    ... ......   ...+++++|+++|++++ ..|..|+||
T Consensus        37 G~TpLh~Aa~~-g~~e~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~Ll~~~~d~~-~~d~~g~tp  106 (223)
T d1uoha_          37 SRTALHWACSA-GHTEIV-----EFLLQLGVPVNDKDDAGWSPLHIAASA---GRDEIVKALLGKGAQVN-AVNQNGCTP  106 (223)
T ss_dssp             SCCHHHHHHHH-TCHHHH-----HHHHHHTCCSCCCCTTCCCHHHHHHHH---TCHHHHHHHHHTTCCTT-CCCTTCCCH
T ss_pred             CCCHHHHHHHh-hhhccc-----ccccccccccccccccccccccccccc---cccchhHHHhccCceeE-eeCCCCCch
Confidence            56799999988 888877     3333331111100    001 111111   13589999999999999 467779999


Q ss_pred             ccccccCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHc
Q 042589          105 RISTFGQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIEN  183 (429)
Q Consensus       105 ~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~  183 (429)
                      +|.+...+..  +.++.|. .+.+    .+.+|..|.||||+|+..|+.++++.|++.+.+ ++.+|.+|+||||+|+..
T Consensus       107 L~~A~~~~~~--e~~~~Ll~~g~d----~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~  179 (223)
T d1uoha_         107 LHYAASKNRH--EIAVMLLEGGAN----PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDE  179 (223)
T ss_dssp             HHHHHHHTCH--HHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHT
T ss_pred             hhHHHHcCCH--HHHHHHHHCCCC----CCCcCCCCCccchhhhhcCCcchhhhhccccce-eeeccCCCCceecccccc
Confidence            9988654332  2333333 3322    255778999999999999999999999987665 588999999999999999


Q ss_pred             CCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccc
Q 042589          184 RQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPW  226 (429)
Q Consensus       184 g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~  226 (429)
                      |+.+++++|++.|+    +++.+|.+|+||||+|+ .|+.+++
T Consensus       180 g~~~~v~~LL~~Ga----d~~~~d~~g~tpl~~A~-~~~~~i~  217 (223)
T d1uoha_         180 ERVEEAKLLVSQGA----SIYIENKEEKTPLQVAK-GGLGLIL  217 (223)
T ss_dssp             TCHHHHHHHHHTTC----CSCCCCTTSCCHHHHCC-TTHHHHH
T ss_pred             CcHHHHHHHHHCCC----CCCCCCCCCCCHHHHHH-CCCHHHH
Confidence            99999999999998    89999999999999984 5665544

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=2.8e-20  Score=167.27  Aligned_cols=143  Identities=15%  Similarity=0.047  Sum_probs=109.6

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccc---------cCCCCCCCc--------------------cc
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTAR---------ETPPDPNTY--------------------KK  130 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i---------~ll~~~~~~--------------------~~  130 (429)
                      .+++++|+++|+++| ..++.+.+|.+.............         .........                    ..
T Consensus        36 ~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  114 (209)
T d1ot8a_          36 ADAAKRLLDAGADAN-SQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA  114 (209)
T ss_dssp             HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTC
T ss_pred             HHHHHHHHhhccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence            689999999999998 345568888774433111111000         000000000                    11


Q ss_pred             ccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCC
Q 042589          131 KNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLG  210 (429)
Q Consensus       131 ~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G  210 (429)
                      ..+.++..|.||||+|+..|..++++.+++.+.+ .+..|..|.||||+|+.+|+.+++++|++.|+    ++|.+|.+|
T Consensus       115 ~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga----d~n~~d~~g  189 (209)
T d1ot8a_         115 DINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNFA----NREITDHMD  189 (209)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTS
T ss_pred             cccccCCCCCCcchhhcccCcceeeeeecccccc-ccccccccccccchhccccHHHHHHHHHHCCC----CCCCcCCCC
Confidence            1256788999999999999999999999988665 57789999999999999999999999999998    899999999


Q ss_pred             CcHHHHHHHcCCCccccc
Q 042589          211 NSALHLAATYGDHRPWHT  228 (429)
Q Consensus       211 ~TpLHlAa~~g~~~~~~~  228 (429)
                      +||||+|++.|+.+++++
T Consensus       190 ~Tpl~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         190 RLPRDVASERLHHDIVRL  207 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHhh
Confidence            999999999999887764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=9.6e-20  Score=150.83  Aligned_cols=95  Identities=20%  Similarity=0.109  Sum_probs=86.5

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      +++|++|+++|+++|                                       .+|.+|+||||+|+..|+.+++++|+
T Consensus        15 ~~~v~~Ll~~g~d~n---------------------------------------~~~~~g~t~lh~A~~~~~~~~~~~ll   55 (118)
T d1myoa_          15 LDEVKDYVAKGEDVN---------------------------------------RTLEGGRKPLHYAADCGQLEILEFLL   55 (118)
T ss_dssp             HHHHHHHHTTTCCCC---------------------------------------CCSSSSCCTTHHHHHHSTTTHHHHHH
T ss_pred             HHHHHHHHHhhhccc---------------------------------------cccccccccccccccccccccccccc
Confidence            467799999999988                                       24568999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHH
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAA  218 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa  218 (429)
                      +++.+ ++.+|.+|+||||+|+.+|+.+++++|++.|+    ++|.+|.+|+||||+|.
T Consensus        56 ~~g~d-in~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Ga----d~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          56 LKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSKGA----DKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HSSCT-TTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCC----CSSSSSSSTCCCCCTCS
T ss_pred             cccce-eeecccccccchhhhhhcCchhhhhhhhcccc----cceeeCCCCCCHHHHHh
Confidence            98766 57889999999999999999999999999998    89999999999999984

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=9.4e-19  Score=149.71  Aligned_cols=136  Identities=16%  Similarity=0.118  Sum_probs=110.3

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .++|+.|+++|++++  .|..|+||+|.+......+...  .+...   ..+....+..+.+++|.++...+.++++.++
T Consensus        15 ~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (153)
T d1awcb_          15 DDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTE--VLLRA---GVSRDARTKVDRTPLHMAASEGHANIVEVLL   87 (153)
T ss_dssp             HHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHH--HHHTT---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcc--cccCCCcccccccccccccccc--ccccc---cccccccccccccccccccccccceeeeccc
Confidence            567899999999998  7888999999886643333211  11111   1111334567889999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +.+.+ ...+|.+|+||||+|+..|+.+++++|++.|+    ++|.+|.+|.||||+|+..|+.++++
T Consensus        88 ~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga----d~~~~d~~g~Tpl~~A~~~g~~eiv~  150 (153)
T d1awcb_          88 KHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGA----DVHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             TTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccCCc-cccccccCchHHHhhhhcchhheeeecccccc----CCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            88765 46789999999999999999999999999998    89999999999999999999987764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.6e-18  Score=148.23  Aligned_cols=135  Identities=16%  Similarity=0.097  Sum_probs=108.1

Q ss_pred             HHHHHHHHhC-CCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           80 IQVFDELVDD-RNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        80 ~~iv~~Ll~~-~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      +++|++|+++ ++++| ..|..|+||+|.+..++.+.+  ..++....+.    +..+..|.+|++.|+..|+.++++.+
T Consensus        15 ~~~vk~lL~~~~~~~n-~~d~~g~t~L~~A~~~~~~~v--~~Ll~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~   87 (156)
T d1bd8a_          15 VQEVRRLLHRELVHPD-ALNRFGKTALQVMMFGSTAIA--LELLKQGASP----NVQDTSGTSPVHDAARTGFLDTLKVL   87 (156)
T ss_dssp             HHHHHHHHHTTCCCTT-CCCTTSCCHHHHSCTTCHHHH--HHHHHTTCCT----TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCC-ccCCCCCcccccccccccccc--cccccccccc----cccccccccccccccccccccccccc
Confidence            4566888865 77888 356679999998875443332  2333333322    44567899999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      ++++++ ++.+|.+|+||||+|+..|+.+++++|+ .++    +++.+|.+|+||||+|+..|+.++++
T Consensus        88 l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~----~~~~~d~~G~TpL~~A~~~g~~~iv~  150 (156)
T d1bd8a_          88 VEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLA-AES----DLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTS----CTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             cccccc-cccccCCCCeeecccccccccccccccc-ccc----cccccCCCCCCHHHHHHHcCCHHHHH
Confidence            998776 4678999999999999999999999888 455    78999999999999999999977765

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=2.1e-18  Score=156.93  Aligned_cols=80  Identities=20%  Similarity=0.178  Sum_probs=47.1

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcC-CCccccccccccCCCCcH
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSR-EELGETIFWQVDNLGNSA  213 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~-~~~~~~~in~~D~~G~Tp  213 (429)
                      +|.+|+||||+|+..|+.++++.|++.++..++.+|.+|+||||+|+.+|+.+++++|+++ |+    +++.+|.+|+||
T Consensus       134 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~ga----d~~~~d~~g~t~  209 (229)
T d1ixva_         134 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA----EYDLVDNKGAKA  209 (229)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC----CSCCCCTTSCCT
T ss_pred             cCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCC----CCCCcCCCCCCH
Confidence            4455666666666666666666666555444555556666666666666666666666543 44    556666666666


Q ss_pred             HHHHH
Q 042589          214 LHLAA  218 (429)
Q Consensus       214 LHlAa  218 (429)
                      ||+|+
T Consensus       210 l~~A~  214 (229)
T d1ixva_         210 EDVAL  214 (229)
T ss_dssp             GGGCS
T ss_pred             HHHHh
Confidence            66554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.73  E-value=9.4e-18  Score=156.47  Aligned_cols=92  Identities=18%  Similarity=0.142  Sum_probs=84.5

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNS  212 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~T  212 (429)
                      +..+..|+||||+|+..|+.++++.++...+.....+|..|+||||+|+..|+.+++++|++.|+    ++|.+|.+|+|
T Consensus       181 ~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~ga----din~~d~~G~T  256 (277)
T d2fo1e1         181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA----SVEAVDATDHT  256 (277)
T ss_dssp             SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CSSCCCSSSCC
T ss_pred             cccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcC----CCCCcCCCCCC
Confidence            55677899999999999999999998887777778889999999999999999999999999998    89999999999


Q ss_pred             HHHHHHHcCCCccccc
Q 042589          213 ALHLAATYGDHRPWHT  228 (429)
Q Consensus       213 pLHlAa~~g~~~~~~~  228 (429)
                      |||+|++.|+.+++++
T Consensus       257 ~L~~A~~~~~~~iv~l  272 (277)
T d2fo1e1         257 ARQLAQANNHHNIVDI  272 (277)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            9999999999877653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.5e-18  Score=141.28  Aligned_cols=104  Identities=13%  Similarity=0.050  Sum_probs=89.6

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      +++|+.|+++|+|+|                                       .+|++|+||||+|+..|+.++++.|+
T Consensus        14 ~~~v~~Ll~~g~d~n---------------------------------------~~d~~g~t~Lh~A~~~~~~~~~~~ll   54 (130)
T d1ycsb1          14 FDLVQRIIYEVDDPS---------------------------------------LPNDEGITALHNAVCAGHTEIVKFLV   54 (130)
T ss_dssp             HHHHHHHTSTTSSCC---------------------------------------CCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcc---------------------------------------cccccccccccccccccccccccccc
Confidence            456799999999988                                       24668999999999999999999999


Q ss_pred             HhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccC-CCCcHHHHH--HHcCCCcccc
Q 042589          160 DTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDN-LGNSALHLA--ATYGDHRPWH  227 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~-~G~TpLHlA--a~~g~~~~~~  227 (429)
                      +.+.+ .+.+|.+|+||||+|+.+|+.+++++|++.|+    +++.+|. +|+||++++  +..|+.++++
T Consensus        55 ~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga----~v~~~~~~~~~~~~~~~~a~~~g~~eiv~  120 (130)
T d1ycsb1          55 QFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGA----AVFAMTYSDMQTAADKCEEMEEGYTQCSQ  120 (130)
T ss_dssp             HHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             ccccc-cccccccCcccccccchhhHHHHHHHHHHcCC----CcccccCCCCCCHHHHHHHHHcChHHHHH
Confidence            98766 57889999999999999999999999999998    8887774 688988776  4567777654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.4e-17  Score=144.43  Aligned_cols=89  Identities=11%  Similarity=0.064  Sum_probs=80.7

Q ss_pred             CCCCCCcHHHHHHHc---CcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCC
Q 042589          135 RSRRKETPILVAAKM---GVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGN  211 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~---G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~  211 (429)
                      .+..|+||||+|++.   |+.++|++|++++.+ ++.+|.+|+||||+|+.+|+.+++++|++.|+    +++.+|.+|.
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~  115 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTDNAECLKLLLRGKA----SIEIANESGE  115 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSC
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhccccccccccccccccccccccCc----cccccCCCCC
Confidence            345799999999984   789999999998766 58899999999999999999999999999998    8999999999


Q ss_pred             cHHHHHHHcCCCccccc
Q 042589          212 SALHLAATYGDHRPWHT  228 (429)
Q Consensus       212 TpLHlAa~~g~~~~~~~  228 (429)
                      ||||+|+..|+.+++++
T Consensus       116 tpL~~A~~~~~~~i~~~  132 (154)
T d1dcqa1         116 TPLDIAKRLKHEHCEEL  132 (154)
T ss_dssp             CHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHH
Confidence            99999999999877653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-18  Score=143.80  Aligned_cols=104  Identities=15%  Similarity=0.093  Sum_probs=89.1

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      +++|++|+++|+++|                                       .+|..|.||||+|+ .|+.+++++|+
T Consensus        16 ~~~v~~Ll~~gad~n---------------------------------------~~~~~g~t~l~~a~-~g~~~~v~~Ll   55 (125)
T d1bi7b_          16 VEEVRALLEAGANPN---------------------------------------APNSYGRRPIQVMM-MGSARVAELLL   55 (125)
T ss_dssp             HHHHHHHHTTTCCTT---------------------------------------CCCSSSCCTTTSSC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCccc---------------------------------------cccccccccccccc-ccccccccccc
Confidence            456699999999988                                       24567999999764 79999999999


Q ss_pred             HhCCCccccCCCCCC-cHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          160 DTFPVAIWDLDPGEK-NVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       160 ~~~~~~~~~~d~~G~-t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      +++.+. +..|..|. ||||+|+++|+.+++++|++.|.    +++.+|.+|+||||+|++.|+.+++++
T Consensus        56 ~~ga~~-~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga----~~~~~d~~G~T~l~~A~~~g~~~~v~~  120 (125)
T d1bi7b_          56 LHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGA----RLDVRDAWGRLPVDLAEELGHRDVARY  120 (125)
T ss_dssp             TTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC----CSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             cccccc-cccccccccccccccccccccccccccccccc----ccccccCCCCCHHHHHHHcCCHHHHHH
Confidence            987664 66777665 69999999999999999999988    899999999999999999999887764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-17  Score=143.41  Aligned_cols=137  Identities=15%  Similarity=0.074  Sum_probs=113.1

Q ss_pred             HHHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCcHHHHHH
Q 042589           79 AIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGVTEMVKK  157 (429)
Q Consensus        79 a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~  157 (429)
                      .+++|+.|+++|+++| ..|+.|.||+|.+..++.   +.++.|. .+.+    .+..+..|.+|++.++..|+.+.++.
T Consensus        13 ~~~~v~~Ll~~g~d~n-~~d~~g~TpL~~A~~~~~---ei~~~Ll~~~a~----~~~~~~~~~~~l~~~~~~~~~~~~~~   84 (156)
T d1ihba_          13 DLEQLTSLLQNNVNVN-AQNGFGRTALQVMKLGNP---EIARRLLLRGAN----PDLKDRTGFAVIHDAARAGFLDTLQT   84 (156)
T ss_dssp             CHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCSSCH---HHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHCCCCcC-ccCCcccccccccccccc---cccccccccccc----cccccccCcccccccccccccccccc
Confidence            3578899999999999 466679999998865433   2333333 3222    25567889999999999999999999


Q ss_pred             HHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          158 ILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       158 Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |++.+.+ .+..|..|.+|||+|+..++.+++++|+++++.   +.+.+|.+|.||||+|++.|+.++++
T Consensus        85 l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~---~~~~~d~~g~TpL~~A~~~~~~~iv~  150 (156)
T d1ihba_          85 LLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACDLARLYGRNEVVS  150 (156)
T ss_dssp             HHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccc-ccccccccccccccccccccccccccccccccc---cccccCCCCCCHHHHHHHcCCHHHHH
Confidence            9988665 477899999999999999999999999998763   78999999999999999999977665

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.5e-17  Score=151.40  Aligned_cols=140  Identities=14%  Similarity=0.027  Sum_probs=108.0

Q ss_pred             HHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCC-CC--CCcccccccCCCCCCcHHHHHHHcCcHHHHHH
Q 042589           81 QVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPP-DP--NTYKKKNARRSRRKETPILVAAKMGVTEMVKK  157 (429)
Q Consensus        81 ~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~--~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~  157 (429)
                      +++++|+++|++++ ..|..|.+|++.+........  ++.+. ..  .............|.||||.|+..|+.++++.
T Consensus        53 ~iv~~L~~~g~d~~-~~d~~g~t~l~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  129 (221)
T d1iknd_          53 EIAEALLGAGCDPE-LRDFRGNTPLHLACEQGCLAS--VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL  129 (221)
T ss_dssp             HHHHCCCSCCCCSC-CCCTTCCCHHHHHHHHTCHHH--HHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cccccccccccccc-ccccccccccccccccccccc--cchhhhhcccccccccccccccccchhhhHHhhcCChhheee
Confidence            46688999999998 355669999997764332221  11111 11  11112224455679999999999999999999


Q ss_pred             HHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          158 ILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       158 Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      |++.++......+.+|+||||+|++.|+.+++++|++.|+    ++|.+|.+|.||||+|+..++.++++
T Consensus       130 l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~ga----d~~~~~~~G~tpl~~A~~~~~~~~~~  195 (221)
T d1iknd_         130 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTYQGYSPYQLTWGRPSTRIQQ  195 (221)
T ss_dssp             HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC----CSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             ecccCcccccccccCCCCccccccccccHHHHHHHHhcCC----cccccCCCCCCHHHHHHHCCCHHHHH
Confidence            9998877655566789999999999999999999999998    89999999999999999999866554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-17  Score=148.88  Aligned_cols=187  Identities=13%  Similarity=-0.023  Sum_probs=124.5

Q ss_pred             CCCchHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchh----HHHHHHHHHhCCCCCCcccccCCCCcc
Q 042589           30 LFPSDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTW----AIQVFDELVDDRNPHVYKYVYNGREPR  105 (429)
Q Consensus        30 ~~~~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~----a~~iv~~Ll~~~a~~~~~~d~~G~~P~  105 (429)
                      ...|++.+|.+ |+.+.++.++ +.+.+ .|.... ..+..+....|..    ..+++++|+++|++.+ .....|.+|.
T Consensus         3 G~TpLh~A~~~-g~~~~v~~Ll-~~~~~-~g~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-~~~~~~~~~~   77 (228)
T d1k1aa_           3 GDTPLHIAVVQ-GNLPAVHRLV-NLFQQ-GGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAA   77 (228)
T ss_dssp             TCCHHHHHHHT-TCHHHHHHHH-HHHHH-TTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHH
T ss_pred             CccHHHHHHHc-CCHHHHHHHH-HHHHH-CCCCCC-ccCCCCCccceehhccccccccccccccccccc-cccccccccc
Confidence            34588988877 8998885544 22221 111110 1111111112221    3689999999999998 3444588887


Q ss_pred             cccccCCcccccc------------ccCC-CCCCCc--------------------ccccccCCCCCCcHHHHHHHcCcH
Q 042589          106 ISTFGQDVNAFTA------------RETP-PDPNTY--------------------KKKNARRSRRKETPILVAAKMGVT  152 (429)
Q Consensus       106 ~~~~~~~~~~~~~------------i~ll-~~~~~~--------------------~~~~~~~d~~G~TpLh~Aa~~G~~  152 (429)
                      +.+..........            .... ......                    .......+..|.+|||.|+..+..
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            7543311110000            0000 000000                    011134556899999999999999


Q ss_pred             HHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccc
Q 042589          153 EMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPW  226 (429)
Q Consensus       153 eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~  226 (429)
                      ++++.+++.+.. ...+|..|+||||+|+..|+.+++++|++.|+    ++|.+|.+|+||||+|++.|+.+++
T Consensus       158 ~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Ga----d~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         158 SMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGA----DSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             hhhhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHhCCCcccc
Confidence            999999988654 56789999999999999999999999999998    8999999999999999999886655

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.1e-17  Score=147.34  Aligned_cols=177  Identities=14%  Similarity=0.017  Sum_probs=126.1

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHH---HhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccccC
Q 042589           35 YVKCFLKGIIDLVQEIELNVIWYA---IYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQ  111 (429)
Q Consensus        35 y~~c~~~g~~~~~~~~l~~~~~~~---~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~  111 (429)
                      ...|.+ |+++.+++++.+.-...   +..|+..+   +-....  -..+++++|++++.+.. ..++.+.+|++.+...
T Consensus         8 ~~~a~~-G~~~~v~~~l~~~~~~~~~~D~~G~TpL---h~Aa~~--g~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           8 CNLAYS-GKLEELKESILADKSLATRTDQDSRTAL---HWACSA--GHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASA   80 (223)
T ss_dssp             HHHHHT-TCHHHHHHHHHHCGGGGGCCCTTSCCHH---HHHHHH--TCHHHHHHHHHHTCCSC-CCCTTCCCHHHHHHHH
T ss_pred             HHHHHh-CCHHHHHHHHHhCCCcCcCcCCCCCCHH---HHHHHh--hhhcccccccccccccc-cccccccccccccccc
Confidence            344555 99998866653222111   11222221   111111  13588999999888777 3455588888766543


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHH
Q 042589          112 DVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNL  191 (429)
Q Consensus       112 ~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~  191 (429)
                      ...  +.++.+.+...   +.+..|.+|.||||+|+.+|+.++++.|++++.+ ++.+|..|.||||+|+..++.+++++
T Consensus        81 ~~~--~i~~~Ll~~~~---d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~~~  154 (223)
T d1uoha_          81 GRD--EIVKALLGKGA---QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHI  154 (223)
T ss_dssp             TCH--HHHHHHHHTTC---CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccc--chhHHHhccCc---eeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchhhh
Confidence            332  22333322111   2256788999999999999999999999988765 47789999999999999999999999


Q ss_pred             HHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          192 LRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       192 Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      |.+.+.    ++|.+|.+|+||||+|+..|+.+++++
T Consensus       155 L~~~~~----~i~~~d~~g~TpL~~Aa~~g~~~~v~~  187 (223)
T d1uoha_         155 LLYYKA----STNIQDTEGNTPLHLACDEERVEEAKL  187 (223)
T ss_dssp             HHHTTC----CSCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             hccccc----eeeeccCCCCceeccccccCcHHHHHH
Confidence            999987    899999999999999999999887763

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.8e-17  Score=150.38  Aligned_cols=92  Identities=23%  Similarity=0.224  Sum_probs=78.0

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCC-------------------------------------ccccCCCCCCc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPV-------------------------------------AIWDLDPGEKN  175 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~-------------------------------------~~~~~d~~G~t  175 (429)
                      ...+..|.||||+|+++|+.+++++|+++.+.                                     .++.+|..|+|
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t  221 (285)
T d1wdya_         142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT  221 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             hhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCC
Confidence            44566799999999999999999999865321                                     11335788999


Q ss_pred             HHHHHHHcCCHHHHHHHHcC-CCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          176 VLLLAIENRQTHVYNLLRSR-EELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       176 ~LH~A~~~g~~~iv~~Ll~~-~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      |||+|+..|+.+++++|++. +.    ++|.+|.+|+||||+|++.|+.+++++
T Consensus       222 ~L~~a~~~~~~~~v~~lL~~~g~----din~~d~~G~TpL~~A~~~~~~eiv~~  271 (285)
T d1wdya_         222 PLILAVEKKHLGLVQRLLEQEHI----EINDTDSDGKTALLLAVELKLKKIAEL  271 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSSSC----CTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccchhhhcCcHHHHHHHHHcCCC----CCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999975 55    899999999999999999999888764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=4.6e-17  Score=153.40  Aligned_cols=82  Identities=21%  Similarity=0.162  Sum_probs=74.8

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCc
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNS  212 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~T  212 (429)
                      ...+..|.||||.|+..|+.++++.|++.+.+ ++.+|..|+||||+|+..|+.++|++|++.|+    ++|.+|.+|+|
T Consensus       193 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga----dv~~~d~~G~T  267 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLC----DMEAVNKVGQT  267 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCC
T ss_pred             ccccCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCC
Confidence            44567899999999999999999999988765 57789999999999999999999999999998    89999999999


Q ss_pred             HHHHHHH
Q 042589          213 ALHLAAT  219 (429)
Q Consensus       213 pLHlAa~  219 (429)
                      |||+|++
T Consensus       268 aL~~A~e  274 (291)
T d1s70b_         268 AFDVADE  274 (291)
T ss_dssp             TTTSCCS
T ss_pred             HHHHHHH
Confidence            9999964

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=5.1e-17  Score=155.40  Aligned_cols=128  Identities=9%  Similarity=0.000  Sum_probs=94.2

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCc----cccc-cccCCCCCCCcccccccCCCCCCcHHHHHHHcCcH--
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDV----NAFT-ARETPPDPNTYKKKNARRSRRKETPILVAAKMGVT--  152 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~----~~~~-~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~--  152 (429)
                      +++|++|+++|++++ ..|+.|+||+|.++....    ..+. .++.+.      ...+..|..|+||||.|+..+..  
T Consensus       120 ~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~------~~~~~~d~~g~t~lh~~~~~~~~~~  192 (301)
T d1sw6a_         120 LELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY------PCLILEDSMNRTILHHIIITSGMTG  192 (301)
T ss_dssp             HHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG------GGGGEECTTCCCHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHCCCCCC-cCCcccccHHHHhhhcccchhhhhHHHHHHHHh------hhhhhcccccCCHHHHHHHHhCccc
Confidence            589999999999999 567779999998875332    1111 111111      11245678899999998876542  


Q ss_pred             --H--------HHHHHHHhCCC------------------------------------ccccCCCCCCcHHHHHHHcCCH
Q 042589          153 --E--------MVKKILDTFPV------------------------------------AIWDLDPGEKNVLLLAIENRQT  186 (429)
Q Consensus       153 --e--------iv~~Ll~~~~~------------------------------------~~~~~d~~G~t~LH~A~~~g~~  186 (429)
                        .        +++.+++....                                    .++.+|.+|+||||+|+++|+.
T Consensus       193 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~  272 (301)
T d1sw6a_         193 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI  272 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCH
T ss_pred             cHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCH
Confidence              2        23333333211                                    1456799999999999999999


Q ss_pred             HHHHHHHcCCCccccccccccCCCCcHHHHHH
Q 042589          187 HVYNLLRSREELGETIFWQVDNLGNSALHLAA  218 (429)
Q Consensus       187 ~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa  218 (429)
                      ++|++|++.|+    +++.+|++|.||||+|+
T Consensus       273 ~iv~~Ll~~GA----d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         273 SIVDALLDYGA----DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHHTTC----CTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHHHCCC----CCCCCCCCCCCHHHHcC
Confidence            99999999999    89999999999999986

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.8e-16  Score=155.83  Aligned_cols=86  Identities=21%  Similarity=0.143  Sum_probs=62.6

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHH
Q 042589          138 RKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLA  217 (429)
Q Consensus       138 ~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlA  217 (429)
                      .+.||||.|+..|+.++++.+++.+.+ ++.+|.+|+||||+|+++|+.++|++|++.|+    ++|.+|.+|+||||+|
T Consensus       296 ~~~t~L~~~~~~~~~~~~~~ll~~g~~-in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GA----d~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         296 MGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA----SPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             SCCCHHHHHHHSSCSHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCSSSCCHHHHH
T ss_pred             cccccchhhcccCcceeeeeecccccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHH
Confidence            444444444444444444444443322 45678889999999999999999999999888    8888999999999999


Q ss_pred             HHcCCCccccc
Q 042589          218 ATYGDHRPWHT  228 (429)
Q Consensus       218 a~~g~~~~~~~  228 (429)
                      ++.|+.+++++
T Consensus       371 ~~~~~~~iv~~  381 (408)
T d1n11a_         371 KRLGYISVTDV  381 (408)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHcCCHHHHHH
Confidence            99988776653

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.4e-16  Score=131.34  Aligned_cols=83  Identities=17%  Similarity=0.053  Sum_probs=77.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHH
Q 042589          140 ETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAAT  219 (429)
Q Consensus       140 ~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~  219 (429)
                      .|||++|+++|+.++|+.|++++.+ ++.+|..|+||||+|+.+|+.+++++|++.+.    ++|.+|.+|+||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~----din~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA----DINAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC----TTTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccc----eeeecccccccchhhhhh
Confidence            4899999999999999999998766 57889999999999999999999999999998    899999999999999999


Q ss_pred             cCCCcccc
Q 042589          220 YGDHRPWH  227 (429)
Q Consensus       220 ~g~~~~~~  227 (429)
                      .|+.++++
T Consensus        78 ~~~~~~v~   85 (118)
T d1myoa_          78 EGHVSCVK   85 (118)
T ss_dssp             TTCCHHHH
T ss_pred             cCchhhhh
Confidence            99988776

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.61  E-value=3.9e-16  Score=146.84  Aligned_cols=181  Identities=16%  Similarity=0.095  Sum_probs=114.5

Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccccCC
Q 042589           33 SDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQD  112 (429)
Q Consensus        33 ~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~  112 (429)
                      +++.||.. |+++.++.+| +...++......+...++-....  -..+++++|+++|.+.+ ..+..+.+|++.+...+
T Consensus        43 ~l~~A~~~-G~~~~v~~Ll-~~Gadvn~~d~~G~T~L~~A~~~--g~~eiv~~Ll~~~~~~~-~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          43 VFLAACSS-GDTEEVLRLL-ERGADINYANVDGLTALHQACID--DNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHHHHH-TCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHHT--TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHc-CCHHHHHHHH-HCCCCCCccCCCCCcHHHHHHhc--CCceeeeeecccccccc-ccccccccccccccccc
Confidence            56777766 9998884333 22221111111111111111110  12577777887777766 23444777777665433


Q ss_pred             ccccccccC-CCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCC--------------------------c
Q 042589          113 VNAFTARET-PPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPV--------------------------A  165 (429)
Q Consensus       113 ~~~~~~i~l-l~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~--------------------------~  165 (429)
                      ..+.  ++. +..+..    .+..|.+|.+|+++|+..|+.+.++.++...+.                          .
T Consensus       118 ~~~~--~~~l~~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (291)
T d1s70b_         118 YLDI--AEYLISQGAH----VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN  191 (291)
T ss_dssp             CHHH--HHHHHHTTCC----TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccch--hhcccccCcc----cccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence            2221  111 122211    133566778888888888888777777753211                          1


Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          166 IWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       166 ~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      ....+..|.||||.|+..|+.+++++|++.|+    ++|.+|.+|+||||+|+..|+.+++++
T Consensus       192 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~----din~~~~~g~TpL~~A~~~g~~~iv~l  250 (291)
T d1s70b_         192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARY----DVNIKDYDGWTPLHAAAHWGKEEACRI  250 (291)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC----CTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cccccCCCCChhhHHHHcCChhhhccccccee----cccccccCCCCHHHHHHHcCCHHHHHH
Confidence            23357899999999999999999999999998    899999999999999999999887763

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=7e-16  Score=142.25  Aligned_cols=90  Identities=16%  Similarity=0.027  Sum_probs=81.7

Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHhC--CCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCC
Q 042589          134 RRSRRKETPILVAAKMGVTEMVKKILDTF--PVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGN  211 (429)
Q Consensus       134 ~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~--~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~  211 (429)
                      ..+++|.||||+||++|+.+++++|++++  +..++..|.+|+||||+|+.+|+.+++++|++.|+    +++.+|.+|+
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga----~i~~~d~~g~   79 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA----GVLVAERGGH   79 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CSSCCCTTSC
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccc----cccccccccc
Confidence            35689999999999999999999999875  34566788999999999999999999999999998    8999999999


Q ss_pred             cHHHHHHHcCCCcccc
Q 042589          212 SALHLAATYGDHRPWH  227 (429)
Q Consensus       212 TpLHlAa~~g~~~~~~  227 (429)
                      ||||+|+..|+.+++.
T Consensus        80 tpL~~A~~~~~~~~~~   95 (255)
T d1oy3d_          80 TALHLACRVRAHTCAC   95 (255)
T ss_dssp             CHHHHHTTTTCHHHHH
T ss_pred             hhhhhhhccCchHHHH
Confidence            9999999999877654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.6e-16  Score=129.93  Aligned_cols=83  Identities=17%  Similarity=0.083  Sum_probs=77.3

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHHc
Q 042589          141 TPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATY  220 (429)
Q Consensus       141 TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~  220 (429)
                      ++||.||..|+.++|+.|++++.+ ++.+|.+|+||||+|+..|+.+++++|++.+.    ++|.+|.+|+||||+|+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~----~~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGV----NVNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC----CTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-cccccccccccccccccccccccccccccccc----ccccccccCcccccccchh
Confidence            679999999999999999998766 57899999999999999999999999999988    8999999999999999999


Q ss_pred             CCCccccc
Q 042589          221 GDHRPWHT  228 (429)
Q Consensus       221 g~~~~~~~  228 (429)
                      |+.++++.
T Consensus        78 g~~~~v~~   85 (130)
T d1ycsb1          78 NNVQVCKF   85 (130)
T ss_dssp             TCHHHHHH
T ss_pred             hHHHHHHH
Confidence            99887763

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.54  E-value=6.6e-16  Score=143.69  Aligned_cols=87  Identities=21%  Similarity=0.129  Sum_probs=76.6

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhC-------CCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCC
Q 042589          137 RRKETPILVAAKMGVTEMVKKILDTF-------PVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNL  209 (429)
Q Consensus       137 ~~G~TpLh~Aa~~G~~eiv~~Ll~~~-------~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~  209 (429)
                      ++|+||||+||..|+.++|+.|+.+.       +..++.+|.+|+||||+|+.+|+.+++++|++.|+    ++|.+|.+
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga----d~n~~~~~  106 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA----DPTIYNKS  106 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CSCCCCTT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccc----cccccccc
Confidence            46999999999999999998886442       23457789999999999999999999999999998    89999999


Q ss_pred             CCcHHHHHHHcCCCcccc
Q 042589          210 GNSALHLAATYGDHRPWH  227 (429)
Q Consensus       210 G~TpLHlAa~~g~~~~~~  227 (429)
                      |+||||+|...++..+..
T Consensus       107 g~t~l~~a~~~~~~~~~~  124 (277)
T d2fo1e1         107 ERSALHQAAANRDFGMMV  124 (277)
T ss_dssp             CCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhcchhhhh
Confidence            999999999999865443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.6e-15  Score=128.22  Aligned_cols=153  Identities=10%  Similarity=-0.058  Sum_probs=107.2

Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccccCC
Q 042589           33 SDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQD  112 (429)
Q Consensus        33 ~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~  112 (429)
                      ++..||.. |+.+.++.++ +...+.+.....+...++-....|   .+++++|+++|++++ ..+..|.+|++.+...+
T Consensus         4 ~Lh~Aa~~-g~~~~v~~Ll-~~g~d~n~~d~~g~TpL~~A~~~~---~ei~~~Ll~~~a~~~-~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           4 ELASAAAR-GDLEQLTSLL-QNNVNVNAQNGFGRTALQVMKLGN---PEIARRLLLRGANPD-LKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHH-TCHHHHHHHT-TSCCCTTCCCTTSCCHHHHCCSSC---HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHc-CCHHHHHHHH-HCCCCcCccCCccccccccccccc---ccccccccccccccc-cccccCccccccccccc
Confidence            46667777 9999884443 222222211122222233333222   689999999999999 56667999998775533


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHH
Q 042589          113 VNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLL  192 (429)
Q Consensus       113 ~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~L  192 (429)
                      ....... ++....    ..+..|..|.+|||+|++.|+.++++.|+++++.....+|.+|+||||+|+.+++.+++++|
T Consensus        78 ~~~~~~~-l~~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          78 FLDTLQT-LLEFQA----DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             CHHHHHH-HHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccc-cccccc----cccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3222111 111111    12556788999999999999999999999998877788999999999999999999999999


Q ss_pred             HcCC
Q 042589          193 RSRE  196 (429)
Q Consensus       193 l~~~  196 (429)
                      ++.|
T Consensus       153 l~~G  156 (156)
T d1ihba_         153 QANG  156 (156)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            9875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.5e-14  Score=133.37  Aligned_cols=70  Identities=29%  Similarity=0.350  Sum_probs=64.6

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccC
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDN  208 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~  208 (429)
                      +|.+|.||||+|++.|+.++|++|++.++..++.+|.+|+||||+|+++|+.+++++|++.|+    ++|.+|.
T Consensus       215 ~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GA----d~n~~d~  284 (285)
T d1wdya_         215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA----STDCGDL  284 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS----CSCCSSC
T ss_pred             cCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCcccC
Confidence            456899999999999999999999987776678899999999999999999999999999999    8998873

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=8.7e-15  Score=132.54  Aligned_cols=185  Identities=12%  Similarity=-0.053  Sum_probs=126.5

Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcc--cccCCCCccccccc
Q 042589           33 SDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYK--YVYNGREPRISTFG  110 (429)
Q Consensus        33 ~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~--~d~~G~~P~~~~~~  110 (429)
                      |++.||.+ |+.+.+++++.............+...++-....  ...+++++|+++|++++..  .++.|.+|.|.+..
T Consensus         3 pLh~A~~~-g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~--g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           3 PLHQACME-NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF--QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             HHHHHHHH-TCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT--TCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             hHHHHHHc-CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHc--CCccccchhhhhhcccccccccccccccccccccc
Confidence            78888888 8888884443211111111111111112211111  1368999999999998732  33459999987654


Q ss_pred             CCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHH
Q 042589          111 QDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYN  190 (429)
Q Consensus       111 ~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~  190 (429)
                      ....+... ..+......  .....+..+.||++.++..++.++++.|++.+.. ....|..|+||||+|+..|+.++++
T Consensus        80 ~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~  155 (229)
T d1ixva_          80 VGNLEVVK-SLYDRPLKP--DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIE  155 (229)
T ss_dssp             HTCHHHHH-HHHSSSSCC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             cccccccc-ccccccccc--cccccccccccccccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhhcccccccc
Confidence            33222111 111111111  1134567899999999999999999999987655 4678999999999999999999999


Q ss_pred             HHHcCCCccccccccccCCCCcHHHHHHHcCCCcccc
Q 042589          191 LLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWH  227 (429)
Q Consensus       191 ~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~~~  227 (429)
                      +|++.+..   ++|.+|.+|+||||+|+..|+.++++
T Consensus       156 ~Ll~~~~~---~in~~d~~g~TpLh~A~~~~~~~~v~  189 (229)
T d1ixva_         156 LLCGLGKS---AVNWQDKQGWTPLFHALAEGHGDAAV  189 (229)
T ss_dssp             HHHTTTCC---CSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccccccc---cccccccccCCchhhhcccccHHHHH
Confidence            99998752   88999999999999999999977665

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.1e-15  Score=126.63  Aligned_cols=151  Identities=12%  Similarity=0.017  Sum_probs=102.2

Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccccCC
Q 042589           33 SDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQD  112 (429)
Q Consensus        33 ~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~  112 (429)
                      .++.||.+ |+.+.+++++.+...........+...++-....   ..+++++|++++.+++ ..+..|.+|++.+....
T Consensus         5 ~L~~Aa~~-g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~~---~~~~v~~Ll~~~~~~~-~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           5 RLSGAAAR-GDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG---STAIALELLKQGASPN-VQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHH-TCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCTT---CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHc-CCHHHHHHHHHhCCCCCCccCCCCCccccccccc---cccccccccccccccc-ccccccccccccccccc
Confidence            36677777 9999885554221111111111112222323222   3588999999999999 35556999999776544


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHH
Q 042589          113 VNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLL  192 (429)
Q Consensus       113 ~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~L  192 (429)
                      ...+.  +.+.+...   ..+.+|++|+||||+||+.|+.+++++|+ .+.+ ++.+|.+|+||||+|+..|+.+++++|
T Consensus        80 ~~~~~--~~~l~~~~---~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~~~iv~~L  152 (156)
T d1bd8a_          80 FLDTL--KVLVEHGA---DVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESD-LHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             CHHHH--HHHHHTTC---CSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             ccccc--cccccccc---ccccccCCCCeeecccccccccccccccc-cccc-ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            33221  11111111   12567789999999999999999999888 4444 577899999999999999999999999


Q ss_pred             HcC
Q 042589          193 RSR  195 (429)
Q Consensus       193 l~~  195 (429)
                      +++
T Consensus       153 l~h  155 (156)
T d1bd8a_         153 QGH  155 (156)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.7e-15  Score=133.89  Aligned_cols=139  Identities=17%  Similarity=0.065  Sum_probs=104.6

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccCCCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL  159 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll  159 (429)
                      .++++.+..+++++| ..|++|+||+|.++..+..  +.++.+.+...   +.+.+|..|.||||+|+.+|+.++++.|+
T Consensus        19 ~~li~~~~~~~~~in-~~d~~g~TpLh~A~~~~~~--~iv~~L~~~g~---d~~~~d~~g~t~l~~~~~~~~~~~~~~l~   92 (221)
T d1iknd_          19 MEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQP--EIAEALLGAGC---DPELRDFRGNTPLHLACEQGCLASVGVLT   92 (221)
T ss_dssp             SCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCH--HHHHCCCSCCC---CSCCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcc-cCCCCCCcccccccccccc--ccccccccccc---cccccccccccccccccccccccccchhh
Confidence            456788899999999 5677899999998765443  33444444322   22567889999999999999999999999


Q ss_pred             HhCC-----CccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccc-cCCCCcHHHHHHHcCCCccccc
Q 042589          160 DTFP-----VAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQV-DNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       160 ~~~~-----~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~-D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      +.+.     .........|+||||.|+..++.+.+++|+..+.    .++.+ |.+|+||||.|+..|+.++++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~----~~~~~~~~~G~T~L~~A~~~g~~~~v~~  163 (221)
T d1iknd_          93 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA----DVNAQEPCNGRTALHLAVDLQNPDLVSL  163 (221)
T ss_dssp             HSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC----CTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             hhcccccccccccccccccchhhhHHhhcCChhheeeecccCc----ccccccccCCCCccccccccccHHHHHH
Confidence            7642     2233345678999999999999999999999887    56555 4689999999999999887763

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-14  Score=120.29  Aligned_cols=117  Identities=14%  Similarity=-0.016  Sum_probs=83.0

Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhchhHHHHHHHHHhCCCCCCcccccCCCCcccccccCC
Q 042589           33 SDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQD  112 (429)
Q Consensus        33 ~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~  112 (429)
                      .++.+|.+ |+++.++.++ +...+.......+...++....   ...+++++|+++|+++|  .               
T Consensus         6 ~L~~Aa~~-G~~~~v~~Ll-~~gad~n~~~~~g~t~l~~a~~---g~~~~v~~Ll~~ga~~~--~---------------   63 (125)
T d1bi7b_           6 WLATAAAR-GRVEEVRALL-EAGANPNAPNSYGRRPIQVMMM---GSARVAELLLLHGAEPN--C---------------   63 (125)
T ss_dssp             HHHHHHHH-TCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSCT---TCHHHHHHHHTTTCCCC--C---------------
T ss_pred             HHHHHHHC-CCHHHHHHHH-HcCCcccccccccccccccccc---ccccccccccccccccc--c---------------
Confidence            57777777 9999884433 2222221111111111111111   13689999999999988  1               


Q ss_pred             ccccccccCCCCCCCcccccccCCCC-CCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHH
Q 042589          113 VNAFTARETPPDPNTYKKKNARRSRR-KETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNL  191 (429)
Q Consensus       113 ~~~~~~i~ll~~~~~~~~~~~~~d~~-G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~  191 (429)
                                            ++.. +.||||+|++.|+.+++++|++++.+ ++.+|.+|+||||+|+++|+.+++++
T Consensus        64 ----------------------~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~  120 (125)
T d1bi7b_          64 ----------------------ADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARY  120 (125)
T ss_dssp             ----------------------CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             ----------------------ccccccccccccccccccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHH
Confidence                                  2233 45799999999999999999999766 57889999999999999999999999


Q ss_pred             HHc
Q 042589          192 LRS  194 (429)
Q Consensus       192 Ll~  194 (429)
                      |++
T Consensus       121 Lls  123 (125)
T d1bi7b_         121 LRA  123 (125)
T ss_dssp             HSS
T ss_pred             HHh
Confidence            975

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.49  E-value=3.5e-16  Score=152.80  Aligned_cols=93  Identities=17%  Similarity=0.089  Sum_probs=75.4

Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccC--CCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCC
Q 042589          134 RRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDL--DPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGN  211 (429)
Q Consensus       134 ~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~--d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~  211 (429)
                      .+|.+|+||||+||++||.++|++|++.+++. +..  +.+|+||||+|+.+||.++|++|++.++. ....+..+.+|.
T Consensus       121 ~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~~~~~  198 (346)
T d2ajaa1         121 VIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYY  198 (346)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHHHHHHHHHcCCc-ccccccccCCCc
Confidence            35668999999999999999999999998764 333  35699999999999999999999998862 113455667788


Q ss_pred             cHHHHHHHcCCCccccc
Q 042589          212 SALHLAATYGDHRPWHT  228 (429)
Q Consensus       212 TpLHlAa~~g~~~~~~~  228 (429)
                      ||||.|+..||.++++.
T Consensus       199 t~l~~A~~~g~~~iv~~  215 (346)
T d2ajaa1         199 AFRWAAVGRGHHNVINF  215 (346)
T ss_dssp             HHHHHHSTTCCHHHHHH
T ss_pred             chhhHHhhcCHHHHHHH
Confidence            88999999999887763

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=8.3e-14  Score=120.15  Aligned_cols=62  Identities=15%  Similarity=0.081  Sum_probs=57.0

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 042589          135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREE  197 (429)
Q Consensus       135 ~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~  197 (429)
                      +|.+|+||||+||+.|+.++++.|++++++. +.+|.+|+||||+|+++|+.+++++|++.++
T Consensus        77 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          77 QTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhhhhccccccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            5678999999999999999999999987764 7889999999999999999999999998654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.7e-14  Score=138.91  Aligned_cols=83  Identities=23%  Similarity=0.156  Sum_probs=77.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHHHHHHH
Q 042589          140 ETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAAT  219 (429)
Q Consensus       140 ~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~  219 (429)
                      .||||+||..|+.++|+.|++.+.+ ++..|..|+||||+|+.+|+.+++++|+++|+    ++|.+|.+|+||||+|+.
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~-in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga----di~~~~~~g~t~L~~A~~   75 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKA----KVNAKAKDDQTPLHCAAR   75 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC----CSSCCCTTSCCHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcC----CCCCCCCCCCCHHHHHHH
Confidence            4999999999999999999998755 57889999999999999999999999999998    899999999999999999


Q ss_pred             cCCCcccc
Q 042589          220 YGDHRPWH  227 (429)
Q Consensus       220 ~g~~~~~~  227 (429)
                      .|+.+++.
T Consensus        76 ~g~~~~~~   83 (408)
T d1n11a_          76 IGHTNMVK   83 (408)
T ss_dssp             HTCHHHHH
T ss_pred             cCCHHHHH
Confidence            99977654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=9.5e-14  Score=123.73  Aligned_cols=105  Identities=17%  Similarity=0.138  Sum_probs=82.3

Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccccCCccccccccC-CCCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHH
Q 042589           80 IQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVNAFTARET-PPDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKI  158 (429)
Q Consensus        80 ~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~l-l~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~L  158 (429)
                      ..+.+.|.+.+++++ ..+..|+||++.+...+....  ++. +.....    .+..|.+|.||||+||..|+.++|+.|
T Consensus       103 ~~~~~~L~~~~~~~~-~~~~~~~t~l~~~~~~~~~~~--~~~l~~~~~~----~~~~d~~g~TpL~~A~~~g~~~~v~~L  175 (209)
T d1ot8a_         103 EGMVEDLITADADIN-AADNSGKTALHWAAAVNNTEA--VNILLMHHAN----RDAQDDKDETPLFLAAREGSYEASKAL  175 (209)
T ss_dssp             TTHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHH--HHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             hhhhhhhhhhccccc-ccCCCCCCcchhhcccCccee--eeeecccccc----ccccccccccccchhccccHHHHHHHH
Confidence            466788999999998 356679999998765333222  221 122111    256788999999999999999999999


Q ss_pred             HHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHH
Q 042589          159 LDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLL  192 (429)
Q Consensus       159 l~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~L  192 (429)
                      ++++++ ++..|..|+||||+|+++|+.++|++|
T Consensus       176 l~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         176 LDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999877 478899999999999999999999986

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1e-13  Score=132.10  Aligned_cols=136  Identities=12%  Similarity=0.041  Sum_probs=81.0

Q ss_pred             HhCCCCCCcccccCCCCcccccccCCccccccccCCC-CCCCcccccccCCCCCCcHHHHHHHcCcH---HHHHHHHHhC
Q 042589           87 VDDRNPHVYKYVYNGREPRISTFGQDVNAFTARETPP-DPNTYKKKNARRSRRKETPILVAAKMGVT---EMVKKILDTF  162 (429)
Q Consensus        87 l~~~a~~~~~~d~~G~~P~~~~~~~~~~~~~~i~ll~-~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~---eiv~~Ll~~~  162 (429)
                      ...+.++|..+|++|+||||.|+..+..+  .++.|. .+.+    .+.+|..|+||||.||..|+.   +.++.+++..
T Consensus        93 ~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~--~v~~Ll~~gad----~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l  166 (301)
T d1sw6a_          93 PNTQLNLNIPVDEHGNTPLHWLTSIANLE--LVKHLVKHGSN----RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL  166 (301)
T ss_dssp             TTSCCCSCSCCSTTCCCHHHHHHHTTCHH--HHHHHHHTTCC----TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH
T ss_pred             CccCCCcCcCcCCCCCCHHHHHHHcCCHH--HHHHHHHCCCC----CCcCCcccccHHHHhhhcccchhhhhHHHHHHHH
Confidence            34566777334777888888776544332  333333 3322    245677888888888887752   1222222222


Q ss_pred             CCccccCCCCCCcHHHHHHHcCC----HHH--------HHHHHcCCCcc-------------------------------
Q 042589          163 PVAIWDLDPGEKNVLLLAIENRQ----THV--------YNLLRSREELG-------------------------------  199 (429)
Q Consensus       163 ~~~~~~~d~~G~t~LH~A~~~g~----~~i--------v~~Ll~~~~~~-------------------------------  199 (429)
                      ......+|..|+||||.++..++    ..+        +..+.+.+...                               
T Consensus       167 ~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (301)
T d1sw6a_         167 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW  246 (301)
T ss_dssp             GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHH
T ss_pred             hhhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHH
Confidence            23345568888888888776443    222        22333222100                               


Q ss_pred             --ccccccccCCCCcHHHHHHHcCCCccccc
Q 042589          200 --ETIFWQVDNLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       200 --~~~in~~D~~G~TpLHlAa~~g~~~~~~~  228 (429)
                        ...+|.+|.+|+||||+|++.|+.+++++
T Consensus       247 ~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~  277 (301)
T d1sw6a_         247 IIANMLNAQDSNGDTCLNIAARLGNISIVDA  277 (301)
T ss_dssp             HHHHTTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             HHhcCccCCCCCCCCHHHHHHHcCCHHHHHH
Confidence              11268889999999999999999877763

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.4e-13  Score=120.17  Aligned_cols=85  Identities=20%  Similarity=0.163  Sum_probs=76.2

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHh---CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccccccCCCCcHH
Q 042589          138 RKETPILVAAKMGVTEMVKKILDT---FPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSAL  214 (429)
Q Consensus       138 ~G~TpLh~Aa~~G~~eiv~~Ll~~---~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D~~G~TpL  214 (429)
                      +|+||||+||+.|+.++++.|++.   .+..++.+|..|+||||+|+.+|+.+++++|++.++    ..+..+.+|.+++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga----~~~~~~~~~~~~~   77 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA----SPMALDRHGQTAA   77 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccc----ccccccccccccc
Confidence            699999999999999999999863   344467889999999999999999999999999998    8889999999999


Q ss_pred             HHHHHcCCCccc
Q 042589          215 HLAATYGDHRPW  226 (429)
Q Consensus       215 HlAa~~g~~~~~  226 (429)
                      +.|...++.+.+
T Consensus        78 ~~a~~~~~~~~~   89 (228)
T d1k1aa_          78 HLACEHRSPTCL   89 (228)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             ccccccccccch
Confidence            999998886544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.39  E-value=1.3e-14  Score=141.39  Aligned_cols=91  Identities=21%  Similarity=0.176  Sum_probs=75.4

Q ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHH---HHHhCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccccccccc--
Q 042589          133 ARRSRRKETPILVAAKMGVTEMVKK---ILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVD--  207 (429)
Q Consensus       133 ~~~d~~G~TpLh~Aa~~G~~eiv~~---Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~iv~~Ll~~~~~~~~~in~~D--  207 (429)
                      +.++.+|.||||+||++||.++++.   |++.+ ..++.+|.+|+||||+|+++||.++|++|++.|+    +++..|  
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~-~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~----~~~~~~~~  158 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSD-EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP----TEIMAMIQ  158 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC-SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT----TTHHHHHS
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC-CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC----Cccccccc
Confidence            4456789999999999999988776   45554 4467889999999999999999999999999998    777765  


Q ss_pred             CCCCcHHHHHHHcCCCccccc
Q 042589          208 NLGNSALHLAATYGDHRPWHT  228 (429)
Q Consensus       208 ~~G~TpLHlAa~~g~~~~~~~  228 (429)
                      .+|+||||+|+..||.++++.
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~  179 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNR  179 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCCChhHHHHHHhhHHHHHH
Confidence            469999999999999988874

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.2e-12  Score=110.81  Aligned_cols=143  Identities=12%  Similarity=-0.014  Sum_probs=92.9

Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHhcCchhhHhHHHhhhhch----hHHHHHHHHHhCCCCCCcccccCCCCccccc
Q 042589           33 SDYVKCFLKGIIDLVQEIELNVIWYAIYAGIRGIKNVREKKETHT----WAIQVFDELVDDRNPHVYKYVYNGREPRIST  108 (429)
Q Consensus        33 ~~y~~c~~~g~~~~~~~~l~~~~~~~~~~g~~~i~~i~~~k~~h~----~a~~iv~~Ll~~~a~~~~~~d~~G~~P~~~~  108 (429)
                      |+..||.. |+.+.++.+|     +. |  ..-..+-.+....|.    ...++++.++......+ ..+..+.++.+..
T Consensus         5 ~L~~Aa~~-g~~~~v~~LL-----~~-g--a~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   74 (153)
T d1awcb_           5 KLLEAARA-GQDDEVRILM-----AN-G--APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHH-TCHHHHHHHH-----HH-T--CCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHH
T ss_pred             HHHHHHHC-CCHHHHHHHH-----Hc-C--CCcccccCCCcccccccccccccccccccccccccc-ccccccccccccc
Confidence            56777655 9999884443     22 1  111111111222231    12577888888877666 2334477776644


Q ss_pred             ccCCccccccccCC-CCCCCcccccccCCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccCCCCCCcHHHHHHHcCCHH
Q 042589          109 FGQDVNAFTARETP-PDPNTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTH  187 (429)
Q Consensus       109 ~~~~~~~~~~i~ll-~~~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~LH~A~~~g~~~  187 (429)
                      ........  ++.+ ..+.    ..+.+|.+|+||||+|+..|+.+++++|++.+.+ ++.+|.+|+||||+|+.+|+.+
T Consensus        75 ~~~~~~~~--~~~l~~~~~----~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~e  147 (153)
T d1awcb_          75 ASEGHANI--VEVLLKHGA----DVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             HHHTCHHH--HHHHHTTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccccee--eecccccCC----ccccccccCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCHHHHHHHcCCHH
Confidence            33222211  1111 1111    1245678999999999999999999999988766 4778999999999999999999


Q ss_pred             HHHHH
Q 042589          188 VYNLL  192 (429)
Q Consensus       188 iv~~L  192 (429)
                      ++++|
T Consensus       148 iv~lL  152 (153)
T d1awcb_         148 LAEIL  152 (153)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99976