Citrus Sinensis ID: 042592

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
MVGGGVIHQLLRKRLQSQSTGLPVLSFFTSKKIHEDAGSVGMKSLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN
cccccHHHHHHHHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHcccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccc
ccccHHHHHHHHHHHccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccccHHHHHHHHHHHHcHHHcccccccEccHHHHHcccHHHHHHHHccccccccccccccccccccccccEccccccccHHHHHHcccccccccccHHHHccccHHHHHHHHHccccccccccccccccEcccccccEcccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEcccc
MVGGGVIHQLLRKRLqsqstglpvlsfftskkihedagsvGMKSLRAFALLGAGVSGFLSFATIASadeaehglacpsypwphkgilssydhasirrGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEvvdgpndegemftrpgklsdrfpqpysneqaarfanggayppdlsLITKARHDGQNYVFALLtgyrdppagvsireglhynpyfpggaiamPKMLIDGaleyedgtpateaqmgKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN
MVGGGVIHQLLRKrlqsqstglpVLSFFTSKKIHEDAGSVGMKSLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEievvdgpndeGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLrwsvlksrklvldvvn
MVGGGVIHQLLRKRLQSQSTGLPVLSFFTSKKIHEDAGSVGMKSLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN
******IHQLLR*******TGLPVLSFFTSKKIHEDAGSVGMKSLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAA*I***************************************AYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDV**
*******************************************SLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLID**********ATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVV*
MVGGGVIHQLLRKRLQSQSTGLPVLSFFTSKKIHEDAGSVGMKSLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN
***************Q**********************SVGMKSLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVV*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
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MVGGGVIHQLLRKRLQSQSTGLPVLSFFTSKKIHEDAGSVGMKSLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query310 2.2.26 [Sep-21-2011]
P25076320 Cytochrome c1-1, heme pro N/A no 0.880 0.853 0.919 1e-149
P29610260 Cytochrome c1-2, heme pro N/A no 0.838 1.0 0.923 1e-143
P08574325 Cytochrome c1, heme prote yes no 0.735 0.701 0.635 4e-81
P00125325 Cytochrome c1, heme prote yes no 0.735 0.701 0.640 7e-81
P07142332 Cytochrome c1, heme prote N/A no 0.767 0.716 0.585 2e-79
Q00988292 Cytochrome c1, heme prote yes no 0.906 0.962 0.520 2e-79
P07143309 Cytochrome c1, heme prote yes no 0.896 0.899 0.508 3e-79
O59680307 Cytochrome c1, heme prote yes no 0.780 0.788 0.533 8e-79
Q54D07275 Cytochrome c1, heme prote yes no 0.732 0.825 0.577 4e-76
Q9D0M3325 Cytochrome c1, heme prote yes no 0.748 0.713 0.633 3e-75
>sp|P25076|CY11_SOLTU Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1 Back     alignment and function desciption
 Score =  529 bits (1362), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 251/273 (91%), Positives = 260/273 (95%)

Query: 38  GSVGMKSLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRR 97
           GS G KS RA A +GAGVSG LSFATIA +DEAEHGL CP+YPWPH+GILSSYDHASIRR
Sbjct: 48  GSAGSKSFRALAAIGAGVSGLLSFATIAYSDEAEHGLECPNYPWPHEGILSSYDHASIRR 107

Query: 98  GHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLS 157
           GHQVYQQVCASCHSMSLISYRDLVGVAYTE+ETKAMAAEIEVVDGPNDEGEMFTRPGKLS
Sbjct: 108 GHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLS 167

Query: 158 DRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLH 217
           DRFPQPY+NE AARFANGGAYPPDLSLITKARH+GQNYVFALLT YRDPPAGVSIREGLH
Sbjct: 168 DRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTAYRDPPAGVSIREGLH 227

Query: 218 YNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKW 277
           YNPYFPGGAIAMPKML DGA+EYEDG PATEAQMGKDVV+FLSWAAEPEMEERKLMGFKW
Sbjct: 228 YNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKW 287

Query: 278 IFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN 310
           IFVLSLALLQA YYRRLRWSVLKSRKLVLDVVN
Sbjct: 288 IFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 320
This is the heme-containing component of the cytochrome b-c1 complex, which accepts electrons from Rieske protein and transfers electrons to cytochrome c in the mitochondrial respiratory chain.
Solanum tuberosum (taxid: 4113)
>sp|P29610|CY12_SOLTU Cytochrome c1-2, heme protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=CYCL PE=1 SV=1 Back     alignment and function description
>sp|P08574|CY1_HUMAN Cytochrome c1, heme protein, mitochondrial OS=Homo sapiens GN=CYC1 PE=1 SV=3 Back     alignment and function description
>sp|P00125|CY1_BOVIN Cytochrome c1, heme protein, mitochondrial OS=Bos taurus GN=CYC1 PE=1 SV=2 Back     alignment and function description
>sp|P07142|CY1_NEUCR Cytochrome c1, heme protein, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyt-1 PE=2 SV=1 Back     alignment and function description
>sp|Q00988|CY1_KLULA Cytochrome c1, heme protein, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CYT1 PE=3 SV=1 Back     alignment and function description
>sp|P07143|CY1_YEAST Cytochrome c1, heme protein, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYT1 PE=1 SV=1 Back     alignment and function description
>sp|O59680|CY1_SCHPO Cytochrome c1, heme protein, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cyt1 PE=3 SV=1 Back     alignment and function description
>sp|Q54D07|CY1_DICDI Cytochrome c1, heme protein, mitochondrial OS=Dictyostelium discoideum GN=cyc1 PE=3 SV=1 Back     alignment and function description
>sp|Q9D0M3|CY1_MOUSE Cytochrome c1, heme protein, mitochondrial OS=Mus musculus GN=Cyc1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
224104849310 predicted protein [Populus trichocarpa] 1.0 1.0 0.919 1e-169
224131844310 predicted protein [Populus trichocarpa] 1.0 1.0 0.922 1e-169
255536989310 cytochrome C1, putative [Ricinus communi 1.0 1.0 0.883 1e-165
449431926307 PREDICTED: cytochrome c1-1, heme protein 0.990 1.0 0.874 1e-158
358248532307 uncharacterized protein LOC100777056 [Gl 0.990 1.0 0.864 1e-157
358249118307 uncharacterized protein LOC100789781 [Gl 0.990 1.0 0.857 1e-156
356511550307 PREDICTED: cytochrome c1-1, heme protein 0.990 1.0 0.857 1e-155
359488616310 PREDICTED: cytochrome c1-1, heme protein 1.0 1.0 0.877 1e-155
388496264307 unknown [Lotus japonicus] 0.990 1.0 0.860 1e-154
356571411307 PREDICTED: cytochrome c1-1, heme protein 0.990 1.0 0.847 1e-153
>gi|224104849|ref|XP_002313590.1| predicted protein [Populus trichocarpa] gi|222849998|gb|EEE87545.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 285/310 (91%), Positives = 298/310 (96%)

Query: 1   MVGGGVIHQLLRKRLQSQSTGLPVLSFFTSKKIHEDAGSVGMKSLRAFALLGAGVSGFLS 60
           M GGGVIHQLLR++LQS S    VLS FTSKK+H DAGSVGMKSLRAFAL GAG+SGFLS
Sbjct: 1   MAGGGVIHQLLRRKLQSHSGATSVLSSFTSKKVHGDAGSVGMKSLRAFALFGAGLSGFLS 60

Query: 61  FATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDL 120
           FA++ASADEAEHGL CPSYPWPHKGILSSYDH+SIRRG QVYQQVCASCHSMSLISYRDL
Sbjct: 61  FASVASADEAEHGLECPSYPWPHKGILSSYDHSSIRRGQQVYQQVCASCHSMSLISYRDL 120

Query: 121 VGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPP 180
           VGVAYTE+ETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPY+NEQAARFANGGAYPP
Sbjct: 121 VGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEQAARFANGGAYPP 180

Query: 181 DLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEY 240
           DLSLITKARH+GQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGA+EY
Sbjct: 181 DLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGAVEY 240

Query: 241 EDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLK 300
           EDGTPATEAQMGKDVV+FLSWAAEPEMEERKLMGFKWIFVLSLALLQA YYRRL+WSVLK
Sbjct: 241 EDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLK 300

Query: 301 SRKLVLDVVN 310
           SRKLVLDVVN
Sbjct: 301 SRKLVLDVVN 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224131844|ref|XP_002328122.1| predicted protein [Populus trichocarpa] gi|118485601|gb|ABK94651.1| unknown [Populus trichocarpa] gi|222837637|gb|EEE76002.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255536989|ref|XP_002509561.1| cytochrome C1, putative [Ricinus communis] gi|223549460|gb|EEF50948.1| cytochrome C1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449431926|ref|XP_004133751.1| PREDICTED: cytochrome c1-1, heme protein, mitochondrial-like [Cucumis sativus] gi|449478083|ref|XP_004155217.1| PREDICTED: cytochrome c1-1, heme protein, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|358248532|ref|NP_001240153.1| uncharacterized protein LOC100777056 [Glycine max] gi|255644589|gb|ACU22797.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|358249118|ref|NP_001239740.1| uncharacterized protein LOC100789781 [Glycine max] gi|255644811|gb|ACU22907.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356511550|ref|XP_003524488.1| PREDICTED: cytochrome c1-1, heme protein, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|359488616|ref|XP_002264598.2| PREDICTED: cytochrome c1-1, heme protein, mitochondrial-like [Vitis vinifera] gi|296090253|emb|CBI40072.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388496264|gb|AFK36198.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356571411|ref|XP_003553870.1| PREDICTED: cytochrome c1-1, heme protein, mitochondrial-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
TAIR|locus:2164471307 AT5G40810 [Arabidopsis thalian 0.990 1.0 0.870 8.1e-147
TAIR|locus:2086553307 AT3G27240 [Arabidopsis thalian 0.990 1.0 0.864 8.4e-145
UNIPROTKB|E2REM0325 CYC1 "Uncharacterized protein" 0.858 0.818 0.594 4.5e-82
ZFIN|ZDB-GENE-031105-2307 cyc1 "cytochrome c-1" [Danio r 0.912 0.921 0.565 7.4e-82
MGI|MGI:1913695325 Cyc1 "cytochrome c-1" [Mus mus 0.851 0.812 0.593 9.4e-82
UNIPROTKB|P00125325 CYC1 "Cytochrome c1, heme prot 0.832 0.793 0.597 1.2e-81
UNIPROTKB|P08574325 CYC1 "Cytochrome c1, heme prot 0.851 0.812 0.589 1.5e-81
RGD|1306597326 Cyc1 "cytochrome c-1" [Rattus 0.851 0.809 0.585 8.5e-81
CGD|CAL0005851288 CYT1 [Candida albicans (taxid: 0.867 0.934 0.548 1.3e-77
UNIPROTKB|Q59ZJ2288 CYT1 "Putative uncharacterized 0.867 0.934 0.548 1.3e-77
TAIR|locus:2164471 AT5G40810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1434 (509.9 bits), Expect = 8.1e-147, P = 8.1e-147
 Identities = 270/310 (87%), Positives = 291/310 (93%)

Query:     1 MVGGGVIHQLLRKRLQSQSTGLPVLSFFTSKKIHEDAGSVGMKSLRAFALLGAGVSGFLS 60
             MVGGGVI QLLR++L SQS   PVLS+ +SKK +EDAGS G   LRAFAL+GAG++G LS
Sbjct:     1 MVGGGVIRQLLRRKLHSQSVATPVLSWLSSKKANEDAGSAG---LRAFALMGAGITGLLS 57

Query:    61 FATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDL 120
             F+T+ASADEAEHGL CP+YPWPH+GILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDL
Sbjct:    58 FSTVASADEAEHGLECPNYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDL 117

Query:   121 VGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPP 180
             VGVAYTE+E KAMAAEIEVVDGPNDEGEMFTRPGKLSDR P+PYSNE AARFANGGAYPP
Sbjct:   118 VGVAYTEEEAKAMAAEIEVVDGPNDEGEMFTRPGKLSDRLPEPYSNESAARFANGGAYPP 177

Query:   181 DLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEY 240
             DLSL+TKARH+GQNYVFALLTGYRDPPAG+SIREGLHYNPYFPGGAIAMPKML D A+EY
Sbjct:   178 DLSLVTKARHNGQNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDEAVEY 237

Query:   241 EDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLK 300
             EDGTPATEAQMGKDVV+FLSWAAEPEMEERKLMGFKWIF+LSLALLQA YYRRL+WSVLK
Sbjct:   238 EDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFLLSLALLQAAYYRRLKWSVLK 297

Query:   301 SRKLVLDVVN 310
             SRKLVLDVVN
Sbjct:   298 SRKLVLDVVN 307
GO:0005506 "iron ion binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0005746 "mitochondrial respiratory chain" evidence=ISS
GO:0009055 "electron carrier activity" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0045153 "electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity" evidence=ISS
GO:0005773 "vacuole" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
TAIR|locus:2086553 AT3G27240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2REM0 CYC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031105-2 cyc1 "cytochrome c-1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1913695 Cyc1 "cytochrome c-1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P00125 CYC1 "Cytochrome c1, heme protein, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P08574 CYC1 "Cytochrome c1, heme protein, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1306597 Cyc1 "cytochrome c-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
CGD|CAL0005851 CYT1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59ZJ2 CYT1 "Putative uncharacterized protein CYT1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P00125CY1_BOVINNo assigned EC number0.64030.73540.7015yesno
P29610CY12_SOLTUNo assigned EC number0.92300.83871.0N/Ano
Q54D07CY1_DICDINo assigned EC number0.57700.73220.8254yesno
P07143CY1_YEASTNo assigned EC number0.50860.89670.8996yesno
Q9D0M3CY1_MOUSENo assigned EC number0.63360.74830.7138yesno
P08574CY1_HUMANNo assigned EC number0.63590.73540.7015yesno
O59680CY1_SCHPONo assigned EC number0.53300.78060.7882yesno
Q00988CY1_KLULANo assigned EC number0.52090.90640.9623yesno
P25076CY11_SOLTUNo assigned EC number0.91940.88060.8531N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
pfam02167217 pfam02167, Cytochrom_C1, Cytochrome C1 family 1e-120
COG2857250 COG2857, CYT1, Cytochrome c1 [Energy production an 7e-72
pfam0003481 pfam00034, Cytochrom_C, Cytochrome c 0.002
>gnl|CDD|216912 pfam02167, Cytochrom_C1, Cytochrome C1 family Back     alignment and domain information 
 Score =  344 bits (884), Expect = e-120
 Identities = 127/217 (58%), Positives = 152/217 (70%), Gaps = 2/217 (0%)

Query: 81  WPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVV 140
           W   G   S+D AS++RG QVY +VCA+CHS+  + YR L  +  TEDE KA AAE EV 
Sbjct: 1   WSFAGPFGSFDKASLQRGAQVYTEVCAACHSLKYVRYRRLADLGLTEDEVKANAAEYEVK 60

Query: 141 DGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALL 200
           DGP D GEMF RPGK  D FP PY NE+AAR+AN GA PPDLSLI KARH G +Y+++LL
Sbjct: 61  DGP-DTGEMFERPGKPGDTFPSPYPNEEAARWANNGAAPPDLSLIAKARHGGPDYIYSLL 119

Query: 201 TGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLS 260
           TGY D PA V +R G +YNPYFPGGAIAMP  L DG +EYEDGTPAT  QM KDVV FL 
Sbjct: 120 TGYYDDPA-VELRPGGYYNPYFPGGAIAMPPPLSDGQVEYEDGTPATYDQMAKDVVAFLM 178

Query: 261 WAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWS 297
           WAAEPE++ERK +G K +  L +  +     ++  W 
Sbjct: 179 WAAEPELDERKRLGLKVLLFLLILTVLLYLLKKRYWK 215

Length = 217
>gnl|CDD|225413 COG2857, CYT1, Cytochrome c1 [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215669 pfam00034, Cytochrom_C, Cytochrome c Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 310
KOG3052311 consensus Cytochrome c1 [Energy production and con 100.0
PF02167219 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR0 100.0
COG2857250 CYT1 Cytochrome c1 [Energy production and conversi 100.0
CHL00133163 psbV photosystem II cytochrome c550; Validated 98.01
TIGR03045159 PS_II_C550 cytochrome c-550. Members of this prote 97.98
PTZ00405114 cytochrome c; Provisional 97.95
PTZ00048115 cytochrome c; Provisional 97.87
PRK13617170 psbV cytochrome c-550; Provisional 97.72
PRK13622180 psbV cytochrome c-550; Provisional 97.7
PRK13618163 psbV cytochrome c-550; Provisional 97.69
PRK13619160 psbV cytochrome c-550; Provisional 97.66
TIGR03874143 4cys_cytochr c-type cytochrome, methanol metabolis 97.41
PRK13620215 psbV cytochrome c-550; Provisional 97.38
CHL00183108 petJ cytochrome c553; Provisional 97.31
PRK14486294 putative bifunctional cbb3-type cytochrome c oxida 97.12
TIGR02603133 CxxCH_TIGR02603 putative heme-binding domain, Pire 97.1
PF0003491 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cyt 97.05
PRK14486294 putative bifunctional cbb3-type cytochrome c oxida 96.98
PF1344267 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, 96.92
PRK13621170 psbV cytochrome c-550; Provisional 96.89
TIGR03872133 cytochrome_MoxG cytochrome c(L), periplasmic. This 96.84
COG3474135 Cytochrome c2 [Energy production and conversion] 96.74
TIGR03046155 PS_II_psbV2 photosystem II cytochrome PsbV2. Membe 96.65
TIGR00782285 ccoP cytochrome c oxidase, cbb3-type, subunit III. 96.6
TIGR00781232 ccoO cytochrome c oxidase, cbb3-type, subunit II. 96.28
PRK14487217 cbb3-type cytochrome c oxidase subunit II; Provisi 96.27
PRK13697111 cytochrome c6; Provisional 96.1
TIGR00782285 ccoP cytochrome c oxidase, cbb3-type, subunit III. 95.66
PF14495135 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC 95.27
COG2010150 CccA Cytochrome c, mono- and diheme variants [Ener 95.17
COG2863121 Cytochrome c553 [Energy production and conversion] 95.15
COG2857250 CYT1 Cytochrome c1 [Energy production and conversi 95.05
PF09098167 Dehyd-heme_bind: Quinohemoprotein amine dehydrogen 94.76
PF02433226 FixO: Cytochrome C oxidase, mono-heme subunit/FixO 92.37
COG4654110 Cytochrome c551/c552 [Energy production and conver 92.12
COG3258293 Cytochrome c [Energy production and conversion] 91.98
PRK14485712 putative bifunctional cbb3-type cytochrome c oxida 91.09
PF06537499 DUF1111: Protein of unknown function (DUF1111); In 82.31
>KOG3052 consensus Cytochrome c1 [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-109  Score=766.79  Aligned_cols=310  Identities=65%  Similarity=1.043  Sum_probs=277.9

Q ss_pred             CCchhhhHHHHHhhhhcCCCCCCccchhhcccccccCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCCCC
Q 042592            1 MVGGGVIHQLLRKRLQSQSTGLPVLSFFTSKKIHEDAGSVGMKSLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYP   80 (310)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~   80 (310)
                      |.++....+.+++++....++..+....+...+.....+++++.+.++++++++.++++..+...++.|+++++|+|.+|
T Consensus         1 m~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~a~~~a~~~g~~~~L~al~~~~ag~~~ll~yal~~svsAs~~~lh~~~~~   80 (311)
T KOG3052|consen    1 MAGGGRMFQGLRKRLLLLHAQRLSLPVRTSFASKGASKSGNKKGLVALGLLTAGIGGLLVYALETSVSASEHGLHPPAYP   80 (311)
T ss_pred             CCcccchhhhHHHHhhhhccccccccccccccccccccccchhHHHHHHHhhhhhhHHHHHHhhcccccccCCcCCccCC
Confidence            44544455556555333322223333333333322355566888888888877766656655567778899999999999


Q ss_pred             CCCCCCCCCcchHHHHhHHHHHHHhhcccccccccchhhcccCCCCHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCC
Q 042592           81 WPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRF  160 (310)
Q Consensus        81 w~~~g~~~~~D~aslqRG~qvy~~vCaaCHSlk~v~yr~L~~~g~te~evka~Aae~~v~d~p~~~g~~f~rp~~~~D~~  160 (310)
                      |+|.|+|++||++|+|||+|||+|||++||||++++||+|+++.+||||+|++|+|++|.|||||+|+||+||||++|+|
T Consensus        81 W~h~g~lss~DhaSiRRGyqVYkqVCaaCHSm~~iayR~lVgv~~Te~EaKa~A~eiev~Dgpdd~G~~~~RPGkLsD~~  160 (311)
T KOG3052|consen   81 WPHSGLLSSFDHASIRRGYQVYKQVCAACHSMDLIAYRHLVGVCYTEEEAKAMAAEIEVVDGPDDEGEMFTRPGKLSDYF  160 (311)
T ss_pred             CCCCCccccccHHHHhhhHHHHHHHHHHhhhhHHHHHHhhhhhhccHHHHHHhhhheeeccCCCCCCCcccCCccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCCCCCCchhHHhhhcCChHHHHHHHhcCCCCCCCcccCCCCcCCCCCCCCcccCccccccCcccc
Q 042592          161 PQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEY  240 (310)
Q Consensus       161 ~sp~~n~~Aa~~An~Ga~PPDLSliakaR~~G~dYIyslL~gy~dpP~g~~~~~g~~yN~~fpg~~iaMP~~L~d~~v~y  240 (310)
                      |+||||++|||+||||++|||||+|++|||||+||||||||||+|||+||.+++|+|||||||||+|+||++|.|+.|||
T Consensus       161 P~PYpNeeAAraANnGA~PPDLS~iv~aRhgG~DYvfSLLTGY~epPAGv~l~~G~~fNPyFpGgaIaMa~~l~de~vEy  240 (311)
T KOG3052|consen  161 PSPYPNEEAARAANNGAYPPDLSLIVKARHGGEDYVFSLLTGYCEPPAGVSLREGLYFNPYFPGGAIAMAKVLFDEVVEY  240 (311)
T ss_pred             CCCCCCHHHHHHhcCCCCCCCchhhhhhhcCCcceeeehhhCCCCCCCCcccCCCcccCCCCCCcccccchhhcccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhHhhhHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeeccCC
Q 042592          241 EDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN  310 (310)
Q Consensus       241 ~DGtpat~~Q~akDVvaFL~waAEP~~~~Rk~~G~~Vl~fL~il~~l~y~~Kr~~W~~vk~rk~~~~~~~  310 (310)
                      |||||+|.+||||||++||.|++||++|+||+||+||++.|.++++++|+.||.+|+.+|+|||+|+|++
T Consensus       241 eDgtPAT~sQ~aKDV~~FL~WasEPehD~RK~~g~K~i~il~~l~~~s~y~KR~kWs~lKsrK~~f~~~~  310 (311)
T KOG3052|consen  241 EDGTPATMSQMAKDVVTFLHWASEPEHDERKLMGLKVIFILSFLTLLSYYIKRHKWSVLKSRKLVFDPPK  310 (311)
T ss_pred             cCCCchhHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHHHHHHHHHHHHHhhccccccceEEecCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999875

>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes Back     alignment and domain information
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion] Back     alignment and domain information
>CHL00133 psbV photosystem II cytochrome c550; Validated Back     alignment and domain information
>TIGR03045 PS_II_C550 cytochrome c-550 Back     alignment and domain information
>PTZ00405 cytochrome c; Provisional Back     alignment and domain information
>PTZ00048 cytochrome c; Provisional Back     alignment and domain information
>PRK13617 psbV cytochrome c-550; Provisional Back     alignment and domain information
>PRK13622 psbV cytochrome c-550; Provisional Back     alignment and domain information
>PRK13618 psbV cytochrome c-550; Provisional Back     alignment and domain information
>PRK13619 psbV cytochrome c-550; Provisional Back     alignment and domain information
>TIGR03874 4cys_cytochr c-type cytochrome, methanol metabolism-related Back     alignment and domain information
>PRK13620 psbV cytochrome c-550; Provisional Back     alignment and domain information
>CHL00183 petJ cytochrome c553; Provisional Back     alignment and domain information
>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional Back     alignment and domain information
>TIGR02603 CxxCH_TIGR02603 putative heme-binding domain, Pirellula/Verrucomicrobium type Back     alignment and domain information
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues Back     alignment and domain information
>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional Back     alignment and domain information
>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A Back     alignment and domain information
>PRK13621 psbV cytochrome c-550; Provisional Back     alignment and domain information
>TIGR03872 cytochrome_MoxG cytochrome c(L), periplasmic Back     alignment and domain information
>COG3474 Cytochrome c2 [Energy production and conversion] Back     alignment and domain information
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2 Back     alignment and domain information
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III Back     alignment and domain information
>TIGR00781 ccoO cytochrome c oxidase, cbb3-type, subunit II Back     alignment and domain information
>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>PRK13697 cytochrome c6; Provisional Back     alignment and domain information
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III Back     alignment and domain information
>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V Back     alignment and domain information
>COG2010 CccA Cytochrome c, mono- and diheme variants [Energy production and conversion] Back     alignment and domain information
>COG2863 Cytochrome c553 [Energy production and conversion] Back     alignment and domain information
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion] Back     alignment and domain information
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1 Back     alignment and domain information
>PF02433 FixO: Cytochrome C oxidase, mono-heme subunit/FixO; InterPro: IPR003468 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO) [] Back     alignment and domain information
>COG4654 Cytochrome c551/c552 [Energy production and conversion] Back     alignment and domain information
>COG3258 Cytochrome c [Energy production and conversion] Back     alignment and domain information
>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional Back     alignment and domain information
>PF06537 DUF1111: Protein of unknown function (DUF1111); InterPro: IPR010538 This entry consists of several hypothetical bacterial proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
1bcc_D241 Cytochrome Bc1 Complex From Chicken Length = 241 2e-82
1bgy_D241 Cytochrome Bc1 Complex From Bovine Length = 241 1e-81
1ezv_D245 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 2e-79
1kyo_D248 Yeast Cytochrome Bc1 Complex With Bound Substrate C 2e-79
1kb9_D246 Yeast Cytochrome Bc1 Complex Length = 246 2e-79
3cwb_D241 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 3e-77
2yiu_B263 X-Ray Structure Of The Dimeric Cytochrome Bc1 Compl 3e-26
2fyn_B269 Crystal Structure Analysis Of The Double Mutant Rho 4e-25
2qjk_B256 Crystal Structure Analysis Of Mutant Rhodobacter Sp 4e-24
1zrt_D258 Rhodobacter Capsulatus Cytochrome Bc1 Complex With 1e-23
1qcr_D75 Crystal Structure Of Bovine Mitochondrial Cytochrom 6e-11
>pdb|1BCC|D Chain D, Cytochrome Bc1 Complex From Chicken Length = 241 Back     alignment and structure 
Iteration: 1

 Score =  301 bits (772), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 147/231 (63%), Positives = 179/231 (77%)
Query: 74  LACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAM 133
           L  PSYPW H+G LSS DH SIRRG QVY+QVC+SCHSM  ++YR LVGV YTEDE KA+
Sbjct: 5   LHPPSYPWSHRGPLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKAL 64
Query: 134 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQ 193
           A E+EV DGPN++GEMF RPGKLSD FP+PY N +AAR AN GA PPDLS I +ARH G+
Sbjct: 65  AEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGE 124
Query: 194 NYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGK 253
           +YVF+LLTGY +PP GVS+REGL++NPYFPG AI M   + +  LE++DGTPAT +Q+ K
Sbjct: 125 DYVFSLLTGYCEPPTGVSVREGLYFNPYFPGQAIGMAPPIYNDVLEFDDGTPATMSQVAK 184
Query: 254 DVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 304
           DV TFL WAAEPE + RK MG K + ++ L +    Y +R +WSVLKSRKL
Sbjct: 185 DVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLVPLVYYMKRHKWSVLKSRKL 235
>pdb|1BGY|D Chain D, Cytochrome Bc1 Complex From Bovine Length = 241 Back     alignment and structure
>pdb|1EZV|D Chain D, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 245 Back     alignment and structure
>pdb|1KYO|D Chain D, Yeast Cytochrome Bc1 Complex With Bound Substrate Cytochrome C Length = 248 Back     alignment and structure
>pdb|1KB9|D Chain D, Yeast Cytochrome Bc1 Complex Length = 246 Back     alignment and structure
>pdb|3CWB|D Chain D, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 241 Back     alignment and structure
>pdb|2YIU|B Chain B, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From The Soil Bacterium Paracoccus Denitrificans At 2.7 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2FYN|B Chain B, Crystal Structure Analysis Of The Double Mutant Rhodobacter Sphaeroides Bc1 Complex Length = 269 Back     alignment and structure
>pdb|2QJK|B Chain B, Crystal Structure Analysis Of Mutant Rhodobacter Sphaeroides Bc1 With Stigmatellin And Antimycin Length = 256 Back     alignment and structure
>pdb|1ZRT|D Chain D, Rhodobacter Capsulatus Cytochrome Bc1 Complex With Stigmatellin Bound Length = 258 Back     alignment and structure
>pdb|1QCR|D Chain D, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 75 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
3cx5_D248 Cytochrome C1, heme protein, mitochondrial; comple 1e-93
1pp9_D241 Cytochrome C-1, cytochrome C1, heme protein, mitoc 4e-93
1zrt_D258 Cytochrome C1; cytochrome BC1, membrane protein, h 7e-87
2qjy_B269 Cytochrome C1; cytochrome B, 8 TM helixces cytochr 4e-84
2yiu_B263 Cytochrome C1, heme protein; oxidoreductase; HET: 1e-83
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D* Length = 248 Back     alignment and structure
 Score =  276 bits (708), Expect = 1e-93
 Identities = 134/239 (56%), Positives = 178/239 (74%), Gaps = 1/239 (0%)

Query: 70  AEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDE 129
           AEHGL  P+Y W H G   ++DHASIRRG+QVY++VCA+CHS+  +++R LVGV++T +E
Sbjct: 4   AEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEE 63

Query: 130 TKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKAR 189
            + MA E E  D P+++G    RPGKLSD  P PY NEQAAR AN GA PPDLSLI KAR
Sbjct: 64  VRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKAR 123

Query: 190 HDGQNYVFALLTGYR-DPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATE 248
           H G +Y+F+LLTGY  +PPAGV++  G +YNPYFPGG+IAM ++L D  +EYEDGTPAT 
Sbjct: 124 HGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATT 183

Query: 249 AQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 307
           +QM KDV TFL+W AEPE +ERK +G K + +LS   L + + ++ +W+ +K+RK V +
Sbjct: 184 SQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFN 242
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ... Length = 241 Back     alignment and structure
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus} Length = 258 Back     alignment and structure
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B* Length = 269 Back     alignment and structure
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans} Length = 263 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
1pp9_D241 Cytochrome C-1, cytochrome C1, heme protein, mitoc 100.0
3cx5_D248 Cytochrome C1, heme protein, mitochondrial; comple 100.0
2yiu_B263 Cytochrome C1, heme protein; oxidoreductase; HET: 100.0
2qjy_B269 Cytochrome C1; cytochrome B, 8 TM helixces cytochr 100.0
1zrt_D258 Cytochrome C1; cytochrome BC1, membrane protein, h 100.0
3o0r_C146 Nitric oxide reductase subunit C; oxidoreductase, 98.53
1ycc_A108 Cytochrome C; electron transport (cytochrome); HET 98.41
2w9k_A114 Cytochrome C, cytochrome C555; electron transport, 98.32
1w5c_T163 Cytochrome C-550; photosynthesis, water oxidation, 98.32
1w2l_A99 Cytochrome oxidase subunit II; cytochrome C domain 98.27
1i54_A103 Cytochrome C; zinc-porphyrin, mixed-metal, electro 98.24
1ls9_A91 Cytochrome C6; omega loop, antiparallel beta-sheet 98.21
2c1d_B137 SOXX; sulfur oxidation, cytochrome-C-type, oxidore 98.16
2l4d_A110 SCO1/SENC family protein/cytochrome C; electron tr 98.14
3mk7_B203 Cytochrome C oxidase, CBB3-type, subunit O; TM hel 98.12
1f1c_A129 Cytochrome C549; dimeric cytochrome, electron tran 98.11
1co6_A107 Protein (cytochrome C2); electron transport(heme p 98.09
1ccr_A112 Cytochrome C; electron transport(cytochrome); HET: 98.09
1h32_B138 Cytochrome C, SOXX; electron transfer, sulfur cycl 98.08
1hro_A106 Cytochrome C2; electron transport, photosynthesis, 98.06
1jdl_A121 C552, cytochrome C2, ISO-2; alpha helix, electron 98.05
2zxy_A87 Cytochrome C552, cytochrome C555; heme protein, ox 98.04
1cch_A82 Cytochrome C551; electron transport; HET: HEM; NMR 97.98
1mz4_A137 Cytochrome C550; PSII associated cytochrome, elect 97.92
3cp5_A124 Cytochrome C; electron transfer protein, electron 97.92
1cyi_A90 Cytochrome C6, cytochrome C553; photosynthesis, el 97.91
1c75_A71 Cytochrome C-553; heme, bacillus pasteurii, AB ini 97.9
1c6r_A89 Cytochrome C6; electron transport protein, reduced 97.88
1qn2_A100 Cytochrome CH; electron transport; HET: HEC; 2.01A 97.86
155c_A135 Cytochrome C550; electron transport; HET: HEM; 2.5 97.84
1cno_A87 Cytochrome C552; electron transport, pseudomonas n 97.8
3ph2_B86 Cytochrome C6; photosynthesis, cytochrome F, photo 97.8
3dr0_A93 Cytochrome C6; photosynthesis, cyanobacteria, elec 97.79
2exv_A82 Cytochrome C-551; alpha helix, heme C, electron tr 97.79
1c2n_A137 Cytochrome C2; electron transport; HET: HEC; NMR { 97.73
3m97_X140 Cytochrome C-552, cytochrome C552; electron transp 97.73
1c53_A79 Cytochrome C553; electron transport; HET: HEM; 1.8 97.7
2blf_B81 SORB, sulfite\:cytochrome C oxidoreductase subunit 97.66
1i8o_A114 Cytochrome C2; electron transport, heme, ammonia, 97.59
2gc4_D147 Cytochrome C-L; electron transfer, methylamine deh 97.55
2zzs_A103 Cytochrome C554; C-type cytochrome, electron trans 97.54
3c2c_A112 Cytochrome C2; electron transport protein (cytochr 97.44
1vyd_A116 Cytochrome C2; electron transport, redox, mutant; 97.43
2d0w_A170 Cytochrome CL; electron transfer, electron transpo 97.42
2c8s_A172 Cytochrome C-L; HAEM, heme, electron transport, me 97.41
2d0s_A79 Cytochrome C, cytochrome C552; heme protein, elect 97.36
1nir_A 543 Nitrite reductase; hemoprotein, denitrification, d 97.26
1a56_A81 C-551, ferricytochrome C-552; hemoprotein, prokary 97.22
1wve_C80 4-cresol dehydrogenase [hydroxylating] cytochrome 97.13
1qks_A 567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 97.05
3a9f_A92 Cytochrome C; alpha helix, mono heme, electron tra 97.01
3mk7_C311 Cytochrome C oxidase, CBB3-type, subunit P; TM hel 97.0
1c52_A131 Cytochrome-C552; electron transport protein, MAD, 96.98
1gdv_A85 Cytochrome C6; RED ALGA, electron transport; HET: 96.97
3oa8_B208 SOXX; cytochrome, sulfur oxidation pathway, heme-b 96.96
2zoo_A442 Probable nitrite reductase; electron transfer, ele 96.88
1m70_A190 Cytochrome C4; electron transport, diheme protein; 96.86
1f1f_A89 Cytochrome C6; heme, protein structure, cyanobacte 96.85
3mk7_C311 Cytochrome C oxidase, CBB3-type, subunit P; TM hel 96.83
3dp5_A99 OMCF, cytochrome C family protein; C-type cytochro 96.81
3dmi_A88 Cytochrome C6; electron transport, transit peptide 96.81
2ce0_A105 Cytochrome C6; chloroplast, electron transport, he 96.8
1kb0_A677 Quinohemoprotein alcohol dehydrogenase; beta-prope 96.78
3cu4_A85 Cytochrome C family protein; monoheme cytochrome, 96.7
2zon_G87 Cytochrome C551; nitrite, electron transfer, denit 96.54
1ayg_A80 Cytochrome C-552; electron transport, porphyrin, f 96.53
1h1o_A183 Cytochrome C-552; electron transport, electron tra 96.5
1e29_A135 Cytochrome C549; electron transport, PSII associat 96.44
1kx2_A81 Mono-heme C-type cytochrome SCYA; HAEM protein, fe 96.43
2yev_B337 Cytochrome C oxidase subunit 2; electron transport 95.35
1cc5_A83 Cytochrome C5; electron transport (heme protein); 95.91
2bh4_X134 Cytochrome C-550; C-type cytochrome, heme, electro 95.91
1m70_A190 Cytochrome C4; electron transport, diheme protein; 95.45
2xts_B205 Cytochrome; oxidoreductase-electron transport comp 95.14
3vrd_A174 FCCA subunit, flavocytochrome C heme subunit; sulf 95.1
1pby_A 489 Quinohemoprotein amine dehydrogenase 60 kDa subuni 95.01
1cxc_A124 Cytochrome C2; electron transport (cytochrome); HE 94.92
1jmx_A 494 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 94.18
1kv9_A668 Type II quinohemoprotein alcohol dehydrogenase; el 94.17
1yiq_A689 Quinohemoprotein alcohol dehydrogenase; electron t 94.13
1h1o_A183 Cytochrome C-552; electron transport, electron tra 94.08
1gks_A78 Cytochrome C551; halophilic purple phototrophic ba 93.54
3vrd_A174 FCCA subunit, flavocytochrome C heme subunit; sulf 93.21
4aan_A341 Cytochrome C551 peroxidase; oxidoreductase, multih 93.07
2c1d_A264 SOXA; sulfur oxidation, cytochrome-C-type, oxidore 91.57
2vhd_A323 Cytochrome C551 peroxidase; iron, heme, transport, 91.51
1zzh_A328 Cytochrome C peroxidase; heme groups, oxidoreducta 91.25
1iqc_A308 DI-heme peroxidase; proteobacteria, B subdivision, 91.19
2c1v_A338 DI-HAEM cytochrome C peroxidase; electron transpor 91.17
1h32_A261 SOXA, diheme cytochrome C; electron transfer, sulf 90.79
1nml_A326 DI-HAEM cytochrome C peroxidase; oxidoreductase, e 90.48
3o5c_A320 Cytochrome C551 peroxidase; diheme cytochrome, hyd 90.03
3hq9_A345 Cytochrome C551 peroxidase; oxidoreductase; HET: H 89.09
3oa8_A275 SOXA; cytochrome, sulfur oxidation pathway, heme-b 87.25
1e8e_A124 Cytochrome C''; oxidoreductase(cytochrome), ligand 86.0
1jmx_A 494 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 83.42
1dw0_A112 Cytochrome C; asparagine ligation, oxygen binding, 83.35
2c1d_A264 SOXA; sulfur oxidation, cytochrome-C-type, oxidore 82.9
3sjl_A373 Methylamine utilization protein MAUG; MAUG, C-heme 81.25
1h32_A261 SOXA, diheme cytochrome C; electron transfer, sulf 80.92
3oa8_A275 SOXA; cytochrome, sulfur oxidation pathway, heme-b 80.54
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ... Back     alignment and structure
Probab=100.00  E-value=1.1e-99  Score=700.10  Aligned_cols=240  Identities=61%  Similarity=1.062  Sum_probs=236.5

Q ss_pred             ccCCCCCCCCCCCCCCCCCcchHHHHhHHHHHHHhhcccccccccchhhcccCCCCHHHHHHHHHhhcccCCCCCCCCCc
Q 042592           71 EHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMF  150 (310)
Q Consensus        71 ~~~~~~~~~~w~~~g~~~~~D~aslqRG~qvy~~vCaaCHSlk~v~yr~L~~~g~te~evka~Aae~~v~d~p~~~g~~f  150 (310)
                      ++..||++++|+|+|+|+++|++|||||+|||+|||++|||++|++||+|.++|+||+|||++|++++|+|+|||+|+||
T Consensus         2 ~~~~~~~~~~w~~~g~~~~~D~~slqRG~qvy~~~CaaCHSl~y~~~r~l~~~g~te~evk~~a~~~~v~d~p~~~g~~f   81 (241)
T 1pp9_D            2 DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMF   81 (241)
T ss_dssp             CCCCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGBTTTBCHHHHHHHHHTSEEEECCCTTSCCE
T ss_pred             CCCCCCCCCCCCCCCCCCCcchHHHhhhHHHHHHhhhhccCccccccccccccCCCHHHHHHHHHhcccCCCcccccccc
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHcCCCCCCCchhHHhhhcCChHHHHHHHhcCCCCCCCcccCCCCcCCCCCCCCcccCc
Q 042592          151 TRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMP  230 (310)
Q Consensus       151 ~rp~~~~D~~~sp~~n~~Aa~~An~Ga~PPDLSliakaR~~G~dYIyslL~gy~dpP~g~~~~~g~~yN~~fpg~~iaMP  230 (310)
                      +|+++++|+||+||+|++|||++|+|+.|||||+|+|||++|+|||||||+||.|||.|+++++|+|||+||||+.|+||
T Consensus        82 ~r~~k~~D~~~~p~~n~~Aa~~an~Ga~PPDLSliaraR~gG~dyIyslL~Gy~dpp~G~~~~~G~~~N~~Fpg~~iaMP  161 (241)
T 1pp9_D           82 MRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMA  161 (241)
T ss_dssp             EEECCTTSBCCCSSSSHHHHHHHTTTCCCCCCSSTTTSSTTHHHHHHHHHTCCCCCCTTCCCCTTCEECTTSTTSEESSC
T ss_pred             cCCccHhhhcccCCChHHHHHHHhCCCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCCccccCCcccccccCCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCcccccCCChhhHhhhHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeeccCC
Q 042592          231 KMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN  310 (310)
Q Consensus       231 ~~L~d~~v~y~DGtpat~~Q~akDVvaFL~waAEP~~~~Rk~~G~~Vl~fL~il~~l~y~~Kr~~W~~vk~rk~~~~~~~  310 (310)
                      +||+++||+|+||||+|++|+++||++||+|++||++++||+||++||+||+||++|+|++||++|++||+|||+|+|++
T Consensus       162 ~~L~~~~v~y~dGtp~~~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y~~kr~~W~~vk~~~~~~~~~~  241 (241)
T 1pp9_D          162 PPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPPK  241 (241)
T ss_dssp             CCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred             ccccccceecCCCCccchHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCceecCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999875
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D* Back     alignment and structure
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans} Back     alignment and structure
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B* Back     alignment and structure
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus} Back     alignment and structure
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa} Back     alignment and structure
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ... Back     alignment and structure
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1 Back     alignment and structure
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus} Back     alignment and structure
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ... Back     alignment and structure
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1 Back     alignment and structure
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus} Back     alignment and structure
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida} Back     alignment and structure
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} Back     alignment and structure
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1 Back     alignment and structure
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A* Back     alignment and structure
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1 Back     alignment and structure
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B* Back     alignment and structure
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1 Back     alignment and structure
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1 Back     alignment and structure
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus} Back     alignment and structure
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A* Back     alignment and structure
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V* Back     alignment and structure
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus} Back     alignment and structure
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A* Back     alignment and structure
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A* Back     alignment and structure
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A* Back     alignment and structure
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1 Back     alignment and structure
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1 Back     alignment and structure
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1 Back     alignment and structure
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A* Back     alignment and structure
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP} Back     alignment and structure
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A* Back     alignment and structure
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1 Back     alignment and structure
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A* Back     alignment and structure
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A* Back     alignment and structure
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B* Back     alignment and structure
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A* Back     alignment and structure
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D* Back     alignment and structure
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus} Back     alignment and structure
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A* Back     alignment and structure
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A* Back     alignment and structure
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans} Back     alignment and structure
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1 Back     alignment and structure
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus} Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A* Back     alignment and structure
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C* Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum} Back     alignment and structure
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} Back     alignment and structure
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A* Back     alignment and structure
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A* Back     alignment and structure
>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B* Back     alignment and structure
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis} Back     alignment and structure
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A* Back     alignment and structure
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A* Back     alignment and structure
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} Back     alignment and structure
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0 Back     alignment and structure
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1 Back     alignment and structure
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A* Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens} Back     alignment and structure
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans} Back     alignment and structure
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A* Back     alignment and structure
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4 Back     alignment and structure
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1 Back     alignment and structure
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A* Back     alignment and structure
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus} Back     alignment and structure
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1 Back     alignment and structure
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A* Back     alignment and structure
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A* Back     alignment and structure
>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus} Back     alignment and structure
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C* Back     alignment and structure
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A* Back     alignment and structure
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A* Back     alignment and structure
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A* Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4 Back     alignment and structure
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1 Back     alignment and structure
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C* Back     alignment and structure
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A* Back     alignment and structure
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans} Back     alignment and structure
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A* Back     alignment and structure
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus} Back     alignment and structure
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5 Back     alignment and structure
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A* Back     alignment and structure
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A* Back     alignment and structure
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A* Back     alignment and structure
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis} Back     alignment and structure
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A* Back     alignment and structure
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A* Back     alignment and structure
>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A* Back     alignment and structure
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A* Back     alignment and structure
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A* Back     alignment and structure
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans} Back     alignment and structure
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A* Back     alignment and structure
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A* Back     alignment and structure
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 310
d3cx5d1199 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's 3e-82
d1ppjd1195 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos 7e-79
d3cx5d247 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cyt 1e-18
d1ppjd246 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cyt 1e-16
d1kb0a197 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydroge 0.002
>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 199 Back     information, alignment and structure

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  244 bits (625), Expect = 3e-82
 Identities = 119/196 (60%), Positives = 150/196 (76%), Gaps = 1/196 (0%)

Query: 70  AEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDE 129
           AEHGL  P+Y W H G   ++DHASIRRG+QVY++VCA+CHS+  +++R LVGV++T +E
Sbjct: 4   AEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEE 63

Query: 130 TKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKAR 189
            + MA E E  D P+++G    RPGKLSD  P PY NEQAAR AN GA PPDLSLI KAR
Sbjct: 64  VRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKAR 123

Query: 190 HDGQNYVFALLTGY-RDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATE 248
           H G +Y+F+LLTGY  +PPAGV++  G +YNPYFPGG+IAM ++L D  +EYEDGTPAT 
Sbjct: 124 HGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATT 183

Query: 249 AQMGKDVVTFLSWAAE 264
           +QM KDV TFL+W AE
Sbjct: 184 SQMAKDVTTFLNWCAE 199
>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195 Back     information, alignment and structure
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47 Back     information, alignment and structure
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]} Length = 46 Back     information, alignment and structure
>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
d3cx5d1199 Cytochrome bc1 domain {Baker's yeast (Saccharomyce 100.0
d1ppjd1195 Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 99 100.0
d1ppjd246 Cytochrome c1 subunit of cytochrome bc1 complex (U 99.7
d3cx5d247 Cytochrome c1 subunit of cytochrome bc1 complex (U 99.55
d1qcrd229 Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 99 99.41
d1ycca_108 Mitochondrial cytochrome c {Baker's yeast (Sacchar 98.6
d1lfma_103 Mitochondrial cytochrome c {Bluefin tuna (Thunnus 98.55
d1kb0a197 Quinoprotein alcohol dehydrogenase, C-terminal dom 98.55
d1hroa_105 Cytochrome c2 {Rhodopila globiformis [TaxId: 1071] 98.44
d1qn2a_99 Cytochrome ch {Methylobacterium extorquens [TaxId: 98.4
d1ql3a_99 Cytochrome c552 {Paracoccus denitrificans [TaxId: 98.39
d1co6a_107 Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 10 98.34
d1nira1112 N-terminal (heme c) domain of cytochrome cd1-nitri 98.34
d1ccra_111 Mitochondrial cytochrome c {Rice embryos (Oryza sa 98.28
d1i8oa_114 Cytochrome c2 {Rhodopseudomonas palustris [TaxId: 98.25
d1h32b_138 Mono-heme c-type cytochrome SoxX {Rhodovulum sulfi 98.21
d1c6sa_87 Cytochrome c6 (synonym: cytochrome c553) {Cyanobac 98.17
d1c75a_71 Cytochrome c6 (synonym: cytochrome c553) {Bacillus 98.17
d1qksa1127 N-terminal (heme c) domain of cytochrome cd1-nitri 98.16
d3c2ca_112 Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085] 98.13
d1gdva_85 Cytochrome c6 (synonym: cytochrome c553) {Red alga 98.12
d1kx7a_81 Mono-heme c-type cytochrome ScyA {Shewanella putre 98.09
d1kv9a1104 Quinoprotein alcohol dehydrogenase, C-terminal dom 98.07
d1cxca_124 Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 106 97.97
d1fcdc294 Flavocytochrome c sulfide dehydrogenase, FCSD, cyt 97.83
d1vyda_116 Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061 97.82
d2gc4d1147 Cytochrome c551 {Paracoccus denitrificans [TaxId: 97.79
d1e29a_135 Photosystem II associated cytochrome c549 {Synecho 97.77
d2c8sa1149 Cytochrome c-L (MoxG) {Methylobacterium extorquens 97.72
d1m70a192 Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]} 97.71
d1cc5a_83 Cytochrome c5 {Azotobacter vinelandii [TaxId: 354] 97.67
d1wvec174 p-Cresol methylhydroxylase, cytochrome c subunit { 97.66
d1f1ca_129 Photosystem II associated cytochrome c549 {Arthros 97.61
d1cota_121 Cytochrome c2 {Paracoccus denitrificans [TaxId: 26 97.54
d1cora_82 Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316] 97.54
d1cnoa_86 Cytochrome c552 {Pseudomonas nautica [TaxId: 2743] 97.5
d1ls9a_91 Cytochrome c6 (synonym: cytochrome c553) {Green al 97.5
d1fcdc180 Flavocytochrome c sulfide dehydrogenase, FCSD, cyt 97.36
d1jdla_118 Cytochrome c2 {Rhodospirillum centenum [TaxId: 340 97.35
d1mz4a_131 Cytochrome c550 {Thermosynechococcus elongatus [Ta 97.27
d1cyja_90 Cytochrome c6 (synonym: cytochrome c553) {Chlamydo 97.25
d351ca_82 Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 28 97.24
d1jmxa184 Quinohemoprotein amine dehydrogenase A chain, doma 97.13
d1c53a_79 Cytochrome c6 (synonym: cytochrome c553) {Desulfov 97.13
d1f1fa_88 Cytochrome c6 (synonym: cytochrome c553) {Arthrosp 97.04
d1ctja_89 Cytochrome c6 (synonym: cytochrome c553) {Monoraph 96.99
d1ynra180 Cytochrome c552 {Hydrogenobacter thermophilus [Tax 96.94
d1pbya185 Quinohemoprotein amine dehydrogenase A chain, doma 96.66
d1a56a_81 Cytochrome c552 {Nitrosomonas europaea [TaxId: 915 96.57
d1m70a298 Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]} 95.48
d1c52a_131 Cytochrome c552 {Thermus thermophilus [TaxId: 274] 95.46
d1h1oa290 Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 9 93.95
d1iqca2158 Di-heme cytochrome c peroxidase {Nitrosomonas euro 93.79
d1nmla2160 Di-heme cytochrome c peroxidase {Pseudomonas nauti 92.83
d1eb7a2159 Di-heme cytochrome c peroxidase {Pseudomonas aerug 92.82
d1gksa_78 Cytochrome c551 {Ectothiorhodospira halophila [Tax 91.32
d1h1oa182 Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 9 89.98
>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-79  Score=547.56  Aligned_cols=196  Identities=61%  Similarity=1.085  Sum_probs=191.9

Q ss_pred             hhccCCCCCCCCCCCCCCCCCcchHHHHhHHHHHHHhhcccccccccchhhcccCCCCHHHHHHHHHhhcccCCCCCCCC
Q 042592           69 EAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGE  148 (310)
Q Consensus        69 a~~~~~~~~~~~w~~~g~~~~~D~aslqRG~qvy~~vCaaCHSlk~v~yr~L~~~g~te~evka~Aae~~v~d~p~~~g~  148 (310)
                      |+++..|+++++|+|+|+||+||++|||||+|||+|||++||||+|+|||||.++|++|+|||++|++++|.++++++|+
T Consensus         3 ~a~~~~h~~~~~~~f~g~~g~~DkasLQRG~qvy~~~C~~CHsl~y~ryr~l~d~g~~e~~v~~~aa~~~v~~~~~~~~~   82 (199)
T d3cx5d1           3 AAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGN   82 (199)
T ss_dssp             HHHHCCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGBTTTBCHHHHHHHHTTSEEECCCCTTCC
T ss_pred             ccccCCCCCCCCCCccCCccccCHHHHHHHHHHHHHHhhhcccchhhhhhhhcccccchhHHHHHHHHhcCccccccccc
Confidence            56677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCCCCCCCCChHHHHHHHcCCCCCCCchhHHhhhcCChHHHHHHHhcC-CCCCCCcccCCCCcCCCCCCCCcc
Q 042592          149 MFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGY-RDPPAGVSIREGLHYNPYFPGGAI  227 (310)
Q Consensus       149 ~f~rp~~~~D~~~sp~~n~~Aa~~An~Ga~PPDLSliakaR~~G~dYIyslL~gy-~dpP~g~~~~~g~~yN~~fpg~~i  227 (310)
                      ++.|+++++|.|++||+|++||+|+|+|+.|||||||+|+|++|+|||||||+|| .|||.++.+++|.|||+||||+.|
T Consensus        83 ~~~~~~k~~D~~~~~~~~~~aa~~~~~Ga~PPDLSLiaraR~gG~dyIys~L~gy~~d~~~~~~~~~~~~~N~~~~~~~i  162 (199)
T d3cx5d1          83 PKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSI  162 (199)
T ss_dssp             CCEEECCTTSBCCCSCSSHHHHHHTTTTCCCCCCSSTTTSSTTHHHHHHHHHHCCCSSCCTTCCCCTTCEECTTSTTSEE
T ss_pred             ccccccccccccccccchHHHHHHhcCCCCCCCcchhhhcccCCChhhHhhhhhcccCCcccccccCCccccccccCcee
Confidence            9999999999999999999999999999999999999999999999999999999 678899999999999999999999


Q ss_pred             cCccccccCcccccCCChhhHhhhHHHHHHHHhhhcC
Q 042592          228 AMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAE  264 (310)
Q Consensus       228 aMP~~L~d~~v~y~DGtpat~~Q~akDVvaFL~waAE  264 (310)
                      +||+||++++|+|+||||+|++||++|||+||+|+||
T Consensus       163 aMp~~L~~~~vey~dGt~at~~q~a~Dv~~FL~waaE  199 (199)
T d3cx5d1         163 AMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAE  199 (199)
T ss_dssp             SSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHC
T ss_pred             ecCCcCcCCCeeecCCChhhHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999997
>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qcrd2 a.3.1.3 (D:167-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]} Back     information, alignment and structure
>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]} Back     information, alignment and structure
>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]} Back     information, alignment and structure
>d1nira1 a.3.1.2 (A:6-117) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum sulfidophilum [TaxId: 35806]} Back     information, alignment and structure
>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]} Back     information, alignment and structure
>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]} Back     information, alignment and structure
>d1qksa1 a.3.1.2 (A:9-135) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Red alga (Porphyra yezoensis) [TaxId: 2788]} Back     information, alignment and structure
>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]} Back     information, alignment and structure
>d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1fcdc2 a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Back     information, alignment and structure
>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Arthrospira maxima [TaxId: 129910]} Back     information, alignment and structure
>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]} Back     information, alignment and structure
>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Back     information, alignment and structure
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]} Back     information, alignment and structure
>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]} Back     information, alignment and structure
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]} Back     information, alignment and structure
>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]} Back     information, alignment and structure
>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]} Back     information, alignment and structure
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]} Back     information, alignment and structure
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira halophila [TaxId: 1053]} Back     information, alignment and structure
>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure